Merge branch 'develop' into analyze #565

	name: CI

	# trigger
	on:
	push:
	pull_request:
	branches:
	- main
	schedule:
	# run Tuesday and Friday at 02:00 UTC
	- cron: '00 2 * * TUE,FRI'
	workflow_dispatch:
	merge_group:

	jobs:
	base:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	# test on latest and minimum python version
	python-version: ['3.13', '3.11']

	steps:
	- name: Check out repository
	uses: actions/checkout@v4

	- name: Prepare python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Cache
	uses: actions/cache@v4
	with:
	path: ~ /.cache
	key: ci-${{ runner.os }}-${{ matrix.python-version }}-base

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y \
	swig \
	libatlas-base-dev \
	libhdf5-serial-dev

	- name: Install Python dependencies
	run: pip install -r requirements_dev.txt

	- name: Run tox
	run: python -m tox

	- name: Run pre-commit hooks
	run: pre-commit run --all-files

	- name: Coverage
	uses: codecov/codecov-action@v5
	with:
	file: ./coverage.xml

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