diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
deleted file mode 100644
index 4efef22..0000000
--- a/.github/workflows/lint.yaml
+++ /dev/null
@@ -1,23 +0,0 @@
-name: Lint and Auto-Fix Code
-
-on:
-  push:
-  pull_request:
-    branches:
-      - main
-
-jobs:
-
-  pre-commit:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-
-      - name: Set up Python
-        uses: actions/setup-python@v3
-
-      - name: Install pre-commit
-        run: pip install pre-commit
-
-      - name: Run pre-commit
-        run: pre-commit run --all-files
diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml
new file mode 100644
index 0000000..c7d816d
--- /dev/null
+++ b/.github/workflows/pre-commit.yaml
@@ -0,0 +1,39 @@
+name: Lint and Auto-Fix Code
+
+on:
+  push:
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v3
+        with:
+          python-version: '3.9'  # Specify the Python version you need
+
+      - name: Install Poetry
+        uses: Gr1N/setup-poetry@v8
+        with:
+          poetry-version: '1.8.3'
+
+      - name: Cache Poetry dependencies
+        uses: actions/cache@v3
+        with:
+          path: |
+            ~/.cache/pypoetry
+            ~/.virtualenvs
+          key: ${{ runner.os }}-poetry-${{ hashFiles('**/poetry.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-poetry-
+
+      - name: Install dependencies
+        run: poetry install
+
+      - name: Run pre-commit
+        run: poetry run pre-commit run --all-files
diff --git a/.github/workflows/pytest-actions.yaml b/.github/workflows/pytest-actions.yaml
index 9500ac2..8ccd03c 100755
--- a/.github/workflows/pytest-actions.yaml
+++ b/.github/workflows/pytest-actions.yaml
@@ -1,4 +1,3 @@
-# GitHub Actions Configuration for integrated testing using pytest
 name: Test osipi
 
 on: [push]
@@ -15,28 +14,43 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
+
       - name: Set up Python 3.10
         uses: actions/setup-python@v4
         with:
           python-version: '3.10'
+
       - name: Set up Java
         uses: actions/setup-java@v3
         with:
           java-version: '11'
           distribution: 'adopt'
           architecture: x64
+
+      - name: Install Poetry
+        uses: Gr1N/setup-poetry@v8
+        with:
+          poetry-version: '1.8.3'  # Specify the Poetry version you need
+
+      - name: Cache Poetry dependencies
+        uses: actions/cache@v3
+        with:
+          path: |
+            ~/.cache/pypoetry
+            ~/.virtualenvs
+          key: ${{ runner.os }}-poetry-${{ hashFiles('**/poetry.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-poetry-
+
+      - name: Update lock file
+        run: poetry lock --no-update
+
       - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install -r requirements.txt
-      - name: Install osipi
-        run: |
-          python -m pip install -e .[docs]
-          python -m pip install -e .[tests]
+        run: poetry install
+
       - name: Test with pytest
-        run: |
-          python -m pip install pytest pytest-cov
-          pytest --junitxml=junit/test-results.xml --cov=dbdicom tests/
+        run: poetry run pytest --junitxml=junit/test-results.xml --cov=dbdicom tests/
+
       - name: Upload coverage to Codecov
         if: runner.os == 'Windows'
         uses: codecov/codecov-action@v3
diff --git a/.gitignore b/.gitignore
index b4ef2fc..2ac6e53 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,3 +4,8 @@ dist
 pytest_cache
 src/osipi/__pycache__
 tests/__pycache__
+.coverage
+junit
+docs/build
+docs/source/generated
+docs/source/sg_execution_times.rst
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ea07871..c2429e4 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -25,8 +25,5 @@ repos:
     rev: v6.1.2  # Use the latest version
     hooks:
       - id: rstcheck
-        entry: rstcheck --ignore-messages="(Hyperlink target .* is not referenced.|No directive entry for
-          .*|Unknown directive type .*|Duplicate explicit target name.*)"
-        args: [
-        "--ignore-roles", "ref",
-        ]
+        args: ["--ignore-directives=autosummary,autofunction,minigallery,image-sg","--ignore-messages=(Hyperlink target *|Duplicate explicit target name*)"]
+        additional_dependencies: [sphinx]
diff --git a/.rstcheck.cfg b/.rstcheck.cfg
new file mode 100644
index 0000000..19f4a4d
--- /dev/null
+++ b/.rstcheck.cfg
@@ -0,0 +1,5 @@
+[rstcheck]
+ignore-directives =
+    autosummary,
+    image-sg,
+    minigallery
diff --git a/docs/build/html/_sphinx_design_static/design-tabs.js b/docs/build/html/_sphinx_design_static/design-tabs.js
new file mode 100644
index 0000000..b25bd6a
--- /dev/null
+++ b/docs/build/html/_sphinx_design_static/design-tabs.js
@@ -0,0 +1,101 @@
+// @ts-check
+
+// Extra JS capability for selected tabs to be synced
+// The selection is stored in local storage so that it persists across page loads.
+
+/**
+ * @type {Record<string, HTMLElement[]>}
+ */
+let sd_id_to_elements = {};
+const storageKeyPrefix = "sphinx-design-tab-id-";
+
+/**
+ * Create a key for a tab element.
+ * @param {HTMLElement} el - The tab element.
+ * @returns {[string, string, string] | null} - The key.
+ *
+ */
+function create_key(el) {
+  let syncId = el.getAttribute("data-sync-id");
+  let syncGroup = el.getAttribute("data-sync-group");
+  if (!syncId || !syncGroup) return null;
+  return [syncGroup, syncId, syncGroup + "--" + syncId];
+}
+
+/**
+ * Initialize the tab selection.
+ *
+ */
+function ready() {
+  // Find all tabs with sync data
+
+  /** @type {string[]} */
+  let groups = [];
+
+  document.querySelectorAll(".sd-tab-label").forEach((label) => {
+    if (label instanceof HTMLElement) {
+      let data = create_key(label);
+      if (data) {
+        let [group, id, key] = data;
+
+        // add click event listener
+        // @ts-ignore
+        label.onclick = onSDLabelClick;
+
+        // store map of key to elements
+        if (!sd_id_to_elements[key]) {
+          sd_id_to_elements[key] = [];
+        }
+        sd_id_to_elements[key].push(label);
+
+        if (groups.indexOf(group) === -1) {
+          groups.push(group);
+          // Check if a specific tab has been selected via URL parameter
+          const tabParam = new URLSearchParams(window.location.search).get(
+            group
+          );
+          if (tabParam) {
+            console.log(
+              "sphinx-design: Selecting tab id for group '" +
+                group +
+                "' from URL parameter: " +
+                tabParam
+            );
+            window.sessionStorage.setItem(storageKeyPrefix + group, tabParam);
+          }
+        }
+
+        // Check is a specific tab has been selected previously
+        let previousId = window.sessionStorage.getItem(
+          storageKeyPrefix + group
+        );
+        if (previousId === id) {
+          // console.log(
+          //   "sphinx-design: Selecting tab from session storage: " + id
+          // );
+          // @ts-ignore
+          label.previousElementSibling.checked = true;
+        }
+      }
+    }
+  });
+}
+
+/**
+ *  Activate other tabs with the same sync id.
+ *
+ * @this {HTMLElement} - The element that was clicked.
+ */
+function onSDLabelClick() {
+  let data = create_key(this);
+  if (!data) return;
+  let [group, id, key] = data;
+  for (const label of sd_id_to_elements[key]) {
+    if (label === this) continue;
+    // @ts-ignore
+    label.previousElementSibling.checked = true;
+  }
+  window.sessionStorage.setItem(storageKeyPrefix + group, id);
+}
+
+document.addEventListener("DOMContentLoaded", ready, false);
diff --git a/docs/build/html/_sphinx_design_static/sphinx-design.min.css b/docs/build/html/_sphinx_design_static/sphinx-design.min.css
new file mode 100644
index 0000000..a325746
--- /dev/null
+++ b/docs/build/html/_sphinx_design_static/sphinx-design.min.css
@@ -0,0 +1 @@
+.sd-bg-primary{background-color:var(--sd-color-primary) !important}.sd-bg-text-primary{color:var(--sd-color-primary-text) !important}button.sd-bg-primary:focus,button.sd-bg-primary:hover{background-color:var(--sd-color-primary-highlight) !important}a.sd-bg-primary:focus,a.sd-bg-primary:hover{background-color:var(--sd-color-primary-highlight) !important}.sd-bg-secondary{background-color:var(--sd-color-secondary) !important}.sd-bg-text-secondary{color:var(--sd-color-secondary-text) !important}button.sd-bg-secondary:focus,button.sd-bg-secondary:hover{background-color:var(--sd-color-secondary-highlight) !important}a.sd-bg-secondary:focus,a.sd-bg-secondary:hover{background-color:var(--sd-color-secondary-highlight) !important}.sd-bg-success{background-color:var(--sd-color-success) !important}.sd-bg-text-success{color:var(--sd-color-success-text) !important}button.sd-bg-success:focus,button.sd-bg-success:hover{background-color:var(--sd-color-success-highlight) 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diff --git a/docs/examples/aif/plot_aif_parker.py b/docs/examples/aif/plot_aif_parker.py
index 4338078..374cbce 100755
--- a/docs/examples/aif/plot_aif_parker.py
+++ b/docs/examples/aif/plot_aif_parker.py
@@ -1,7 +1,9 @@
-"""======================================
+"""
+======================================
+The Parker AIF - a play with variables
+======================================
 
-The Parker AIF - a play with variables ======================================  Simulating a Parker
-AIF with different settings.
+Simulating a Parker AIF with different settings.
 
 """
 
diff --git a/docs/source/generated/.DS_Store b/docs/source/generated/.DS_Store
deleted file mode 100644
index 6e4d486..0000000
Binary files a/docs/source/generated/.DS_Store and /dev/null differ
diff --git a/docs/source/generated/api/osipi.aif_georgiou.rst b/docs/source/generated/api/osipi.aif_georgiou.rst
deleted file mode 100755
index d8ba024..0000000
--- a/docs/source/generated/api/osipi.aif_georgiou.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-osipi.aif\_georgiou
-===================
-
-
-.. currentmodule:: osipi
-
-
-
-.. autofunction:: aif_georgiou
-
-
-
-
-
-.. minigallery:: osipi.aif_georgiou
-   :add-heading:
diff --git a/docs/source/generated/api/osipi.aif_parker.rst b/docs/source/generated/api/osipi.aif_parker.rst
deleted file mode 100755
index 35cd470..0000000
--- a/docs/source/generated/api/osipi.aif_parker.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-osipi.aif\_parker
-=================
-
-
-.. currentmodule:: osipi
-
-
-
-.. autofunction:: aif_parker
-
-
-
-
-
-.. minigallery:: osipi.aif_parker
-   :add-heading:
diff --git a/docs/source/generated/api/osipi.aif_weinmann.rst b/docs/source/generated/api/osipi.aif_weinmann.rst
deleted file mode 100755
index e412fb0..0000000
--- a/docs/source/generated/api/osipi.aif_weinmann.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-osipi.aif\_weinmann
-===================
-
-
-.. currentmodule:: osipi
-
-
-
-.. autofunction:: aif_weinmann
-
-
-
-
-
-.. minigallery:: osipi.aif_weinmann
-   :add-heading:
diff --git a/docs/source/generated/api/osipi.extended_tofts.rst b/docs/source/generated/api/osipi.extended_tofts.rst
deleted file mode 100755
index 32027a9..0000000
--- a/docs/source/generated/api/osipi.extended_tofts.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-osipi.extended\_tofts
-=====================
-
-
-.. currentmodule:: osipi
-
-
-
-.. autofunction:: extended_tofts
-
-
-
-
-
-.. minigallery:: osipi.extended_tofts
-   :add-heading:
diff --git a/docs/source/generated/api/osipi.tofts.rst b/docs/source/generated/api/osipi.tofts.rst
deleted file mode 100755
index 317c72b..0000000
--- a/docs/source/generated/api/osipi.tofts.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-osipi.tofts
-===========
-
-
-.. currentmodule:: osipi
-
-
-
-.. autofunction:: tofts
-
-
-
-
-
-.. minigallery:: osipi.tofts
-   :add-heading:
diff --git a/docs/source/generated/backreferences/osipi.aif_georgiou.examples b/docs/source/generated/backreferences/osipi.aif_georgiou.examples
deleted file mode 100755
index e69de29..0000000
diff --git a/docs/source/generated/backreferences/osipi.aif_parker.examples b/docs/source/generated/backreferences/osipi.aif_parker.examples
deleted file mode 100755
index 099b5ed..0000000
--- a/docs/source/generated/backreferences/osipi.aif_parker.examples
+++ /dev/null
@@ -1,38 +0,0 @@
-
-
-Examples using ``osipi.aif_parker``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-
-.. start-sphx-glr-thumbnails
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from extended Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Extended Tofts model</div>
-    </div>
-
-
-.. only:: not html
-
- * :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-    </div>
diff --git a/docs/source/generated/backreferences/osipi.aif_weinmann.examples b/docs/source/generated/backreferences/osipi.aif_weinmann.examples
deleted file mode 100755
index e69de29..0000000
diff --git a/docs/source/generated/backreferences/osipi.extended_tofts.examples b/docs/source/generated/backreferences/osipi.extended_tofts.examples
deleted file mode 100755
index fab4186..0000000
--- a/docs/source/generated/backreferences/osipi.extended_tofts.examples
+++ /dev/null
@@ -1,38 +0,0 @@
-
-
-Examples using ``osipi.extended_tofts``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-
-.. start-sphx-glr-thumbnails
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from extended Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Extended Tofts model</div>
-    </div>
-
-
-.. only:: not html
-
- * :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-    </div>
diff --git a/docs/source/generated/backreferences/osipi.tofts.examples b/docs/source/generated/backreferences/osipi.tofts.examples
deleted file mode 100755
index 8157cbb..0000000
--- a/docs/source/generated/backreferences/osipi.tofts.examples
+++ /dev/null
@@ -1,38 +0,0 @@
-
-
-Examples using ``osipi.tofts``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-
-.. start-sphx-glr-thumbnails
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Tofts model</div>
-    </div>
-
-
-.. only:: not html
-
- * :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py`
-
-.. raw:: html
-
-    </div>
diff --git a/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_001.png b/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_001.png
deleted file mode 100755
index ebf46b3..0000000
Binary files a/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_001.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_002.png b/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_002.png
deleted file mode 100755
index 90f32a6..0000000
Binary files a/docs/source/generated/examples/aif/images/sphx_glr_plot_aif_parker_002.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_001.png b/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_001.png
deleted file mode 100755
index ebf46b3..0000000
Binary files a/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_001.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_002.png b/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_002.png
deleted file mode 100755
index 90f32a6..0000000
Binary files a/docs/source/generated/examples/aif/images/sphx_glr_plot_dummy_002.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_aif_parker_thumb.png b/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_aif_parker_thumb.png
deleted file mode 100755
index 5fb3446..0000000
Binary files a/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_aif_parker_thumb.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_dummy_thumb.png b/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_dummy_thumb.png
deleted file mode 100755
index 5fb3446..0000000
Binary files a/docs/source/generated/examples/aif/images/thumb/sphx_glr_plot_dummy_thumb.png and /dev/null differ
diff --git a/docs/source/generated/examples/aif/index.rst b/docs/source/generated/examples/aif/index.rst
deleted file mode 100755
index d9ec3b3..0000000
--- a/docs/source/generated/examples/aif/index.rst
+++ /dev/null
@@ -1,61 +0,0 @@
-
-
-.. _sphx_glr_generated_examples_aif:
-
-************************
-Arterial Input Functions
-************************
-
-
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating a Parker AIF with different settings. ">
-
-.. only:: html
-
-  .. image:: /generated/examples/aif/images/thumb/sphx_glr_plot_aif_parker_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_aif_plot_aif_parker.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Parker AIF - a play with variables</div>
-    </div>
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Dummy script to illustrate structure of examples folder ">
-
-.. only:: html
-
-  .. image:: /generated/examples/aif/images/thumb/sphx_glr_plot_dummy_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_aif_plot_dummy.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">A dummy script</div>
-    </div>
-
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /generated/examples/aif/plot_aif_parker
-   /generated/examples/aif/plot_dummy
diff --git a/docs/source/generated/examples/aif/plot_aif_parker.ipynb b/docs/source/generated/examples/aif/plot_aif_parker.ipynb
deleted file mode 100755
index f0452bc..0000000
--- a/docs/source/generated/examples/aif/plot_aif_parker.ipynb
+++ /dev/null
@@ -1,113 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "\n# The Parker AIF - a play with variables\n\nSimulating a Parker AIF with different settings. \n"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Import necessary packages\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "import numpy as np\n",
-    "import matplotlib.pyplot as plt\n",
-    "import osipi"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Generate synthetic AIF with default settings and plot the result.\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "# Define time points in units of seconds - in this case we use a time resolution of 0.5 sec and a total duration of 6 minutes.\n",
-    "t = np.arange(0, 6 * 60, 0.5)\n",
-    "\n",
-    "# Create an AIF with default settings\n",
-    "ca = osipi.aif_parker(t)\n",
-    "\n",
-    "# Plot the AIF over the full range\n",
-    "plt.plot(t, ca, \"r-\")\n",
-    "plt.plot(t, 0 * t, \"k-\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Plasma concentration (mM)\")\n",
-    "plt.show()"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "The bolus arrival time (BAT) defaults to 0s. What happens if we change it? Let's try, by changing it in steps of 30s:\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "ca = osipi.aif_parker(t, BAT=0)\n",
-    "plt.plot(t, ca, \"b-\", label=\"BAT = 0s\")\n",
-    "ca = osipi.aif_parker(t, BAT=30)\n",
-    "plt.plot(t, ca, \"r-\", label=\"BAT = 30s\")\n",
-    "ca = osipi.aif_parker(t, BAT=60)\n",
-    "plt.plot(t, ca, \"g-\", label=\"BAT = 60s\")\n",
-    "ca = osipi.aif_parker(t, BAT=90)\n",
-    "plt.plot(t, ca, \"m-\", label=\"BAT = 90s\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Plasma concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()\n",
-    "\n",
-    "# Choose the last image as a thumbnail for the gallery\n",
-    "# sphinx_gallery_thumbnail_number = -1"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.9.16"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 0
-}
diff --git a/docs/source/generated/examples/aif/plot_aif_parker.py b/docs/source/generated/examples/aif/plot_aif_parker.py
deleted file mode 100755
index 4338078..0000000
--- a/docs/source/generated/examples/aif/plot_aif_parker.py
+++ /dev/null
@@ -1,50 +0,0 @@
-"""======================================
-
-The Parker AIF - a play with variables ======================================  Simulating a Parker
-AIF with different settings.
-
-"""
-
-import matplotlib.pyplot as plt
-
-# %%
-# Import necessary packages
-import numpy as np
-import osipi
-
-# %%
-# Generate synthetic AIF with default settings and plot the result.
-
-# Define time points in units of seconds - in this case we use a time
-# resolution of 0.5 sec and a total duration of 6 minutes.
-t = np.arange(0, 6 * 60, 0.5)
-
-# Create an AIF with default settings
-ca = osipi.aif_parker(t)
-
-# Plot the AIF over the full range
-plt.plot(t, ca, "r-")
-plt.plot(t, 0 * t, "k-")
-plt.xlabel("Time (sec)")
-plt.ylabel("Plasma concentration (mM)")
-plt.show()
-
-# %%
-# The bolus arrival time (BAT) defaults to 0s. What happens if we
-# change it? Let's try, by changing it in steps of 30s:
-
-ca = osipi.aif_parker(t, BAT=0)
-plt.plot(t, ca, "b-", label="BAT = 0s")
-ca = osipi.aif_parker(t, BAT=30)
-plt.plot(t, ca, "r-", label="BAT = 30s")
-ca = osipi.aif_parker(t, BAT=60)
-plt.plot(t, ca, "g-", label="BAT = 60s")
-ca = osipi.aif_parker(t, BAT=90)
-plt.plot(t, ca, "m-", label="BAT = 90s")
-plt.xlabel("Time (sec)")
-plt.ylabel("Plasma concentration (mM)")
-plt.legend()
-plt.show()
-
-# Choose the last image as a thumbnail for the gallery
-# sphinx_gallery_thumbnail_number = -1
diff --git a/docs/source/generated/examples/aif/plot_aif_parker.py.md5 b/docs/source/generated/examples/aif/plot_aif_parker.py.md5
deleted file mode 100755
index 38d4e11..0000000
--- a/docs/source/generated/examples/aif/plot_aif_parker.py.md5
+++ /dev/null
@@ -1 +0,0 @@
-2ad42a0f8a1b8aa8ec46f9a5f66e86e4
diff --git a/docs/source/generated/examples/aif/plot_aif_parker.rst b/docs/source/generated/examples/aif/plot_aif_parker.rst
deleted file mode 100755
index f862c5c..0000000
--- a/docs/source/generated/examples/aif/plot_aif_parker.rst
+++ /dev/null
@@ -1,144 +0,0 @@
-
-.. DO NOT EDIT.
-.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
-.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "generated/examples/aif/plot_aif_parker.py"
-.. LINE NUMBERS ARE GIVEN BELOW.
-
-.. only:: html
-
-    .. note::
-        :class: sphx-glr-download-link-note
-
-        :ref:`Go to the end <sphx_glr_download_generated_examples_aif_plot_aif_parker.py>`
-        to download the full example code
-
-.. rst-class:: sphx-glr-example-title
-
-.. _sphx_glr_generated_examples_aif_plot_aif_parker.py:
-
-
-======================================
-The Parker AIF - a play with variables
-======================================
-
-Simulating a Parker AIF with different settings.
-
-.. GENERATED FROM PYTHON SOURCE LINES 10-11
-
-Import necessary packages
-
-.. GENERATED FROM PYTHON SOURCE LINES 11-15
-
-.. code-block:: default
-
-    import numpy as np
-    import matplotlib.pyplot as plt
-    import osipi
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 16-17
-
-Generate synthetic AIF with default settings and plot the result.
-
-.. GENERATED FROM PYTHON SOURCE LINES 17-31
-
-.. code-block:: default
-
-
-    # Define time points in units of seconds - in this case we use a time resolution of 0.5 sec and a total duration of 6 minutes.
-    t = np.arange(0, 6*60, 0.5)
-
-    # Create an AIF with default settings
-    ca = osipi.aif_parker(t)
-
-    # Plot the AIF over the full range
-    plt.plot(t, ca, 'r-')
-    plt.plot(t, 0*t, 'k-')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Plasma concentration (mM)')
-    plt.show()
-
-
-
-
-.. image-sg:: /generated/examples/aif/images/sphx_glr_plot_aif_parker_001.png
-   :alt: plot aif parker
-   :srcset: /generated/examples/aif/images/sphx_glr_plot_aif_parker_001.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 32-33
-
-The bolus arrival time (BAT) defaults to 0s. What happens if we change it? Let's try, by changing it in steps of 30s:
-
-.. GENERATED FROM PYTHON SOURCE LINES 33-49
-
-.. code-block:: default
-
-
-    ca = osipi.aif_parker(t, BAT=0)
-    plt.plot(t, ca, 'b-', label='BAT = 0s')
-    ca = osipi.aif_parker(t, BAT=30)
-    plt.plot(t, ca, 'r-', label='BAT = 30s')
-    ca = osipi.aif_parker(t, BAT=60)
-    plt.plot(t, ca, 'g-', label='BAT = 60s')
-    ca = osipi.aif_parker(t, BAT=90)
-    plt.plot(t, ca, 'm-', label='BAT = 90s')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Plasma concentration (mM)')
-    plt.legend()
-    plt.show()
-
-    # Choose the last image as a thumbnail for the gallery
-    # sphinx_gallery_thumbnail_number = -1
-
-
-
-.. image-sg:: /generated/examples/aif/images/sphx_glr_plot_aif_parker_002.png
-   :alt: plot aif parker
-   :srcset: /generated/examples/aif/images/sphx_glr_plot_aif_parker_002.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** (0 minutes 0.110 seconds)
-
-
-.. _sphx_glr_download_generated_examples_aif_plot_aif_parker.py:
-
-.. only:: html
-
-  .. container:: sphx-glr-footer sphx-glr-footer-example
-
-
-
-
-    .. container:: sphx-glr-download sphx-glr-download-python
-
-      :download:`Download Python source code: plot_aif_parker.py <plot_aif_parker.py>`
-
-    .. container:: sphx-glr-download sphx-glr-download-jupyter
-
-      :download:`Download Jupyter notebook: plot_aif_parker.ipynb <plot_aif_parker.ipynb>`
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/docs/source/generated/examples/aif/plot_aif_parker_codeobj.pickle b/docs/source/generated/examples/aif/plot_aif_parker_codeobj.pickle
deleted file mode 100755
index 7f1df19..0000000
Binary files a/docs/source/generated/examples/aif/plot_aif_parker_codeobj.pickle and /dev/null differ
diff --git a/docs/source/generated/examples/aif/plot_dummy.ipynb b/docs/source/generated/examples/aif/plot_dummy.ipynb
deleted file mode 100755
index 7da2ef2..0000000
--- a/docs/source/generated/examples/aif/plot_dummy.ipynb
+++ /dev/null
@@ -1,113 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "\n# A dummy script\n\nDummy script to illustrate structure of examples folder \n"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Import necessary packages\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "import numpy as np\n",
-    "import matplotlib.pyplot as plt\n",
-    "import osipi"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Generate synthetic AIF with default settings and plot the result.\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "# Define time points in units of seconds - in this case we use a time resolution of 0.5 sec and a total duration of 6 minutes.\n",
-    "t = np.arange(0, 6 * 60, 0.5)\n",
-    "\n",
-    "# Create an AIF with default settings\n",
-    "ca = osipi.aif_parker(t)\n",
-    "\n",
-    "# Plot the AIF over the full range\n",
-    "plt.plot(t, ca, \"r-\")\n",
-    "plt.plot(t, 0 * t, \"k-\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Plasma concentration (mM)\")\n",
-    "plt.show()"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "The bolus arrival time (BAT) defaults to 30s. What happens if we change it? Let's try, by changing it in steps of 30s:\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "ca = osipi.aif_parker(t, BAT=0)\n",
-    "plt.plot(t, ca, \"b-\", label=\"BAT = 0s\")\n",
-    "ca = osipi.aif_parker(t, BAT=30)\n",
-    "plt.plot(t, ca, \"r-\", label=\"BAT = 30s\")\n",
-    "ca = osipi.aif_parker(t, BAT=60)\n",
-    "plt.plot(t, ca, \"g-\", label=\"BAT = 60s\")\n",
-    "ca = osipi.aif_parker(t, BAT=90)\n",
-    "plt.plot(t, ca, \"m-\", label=\"BAT = 90s\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Plasma concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()\n",
-    "\n",
-    "# Choose the last image as a thumbnail for the gallery\n",
-    "# sphinx_gallery_thumbnail_number = -1"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.9.16"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 0
-}
diff --git a/docs/source/generated/examples/aif/plot_dummy.py b/docs/source/generated/examples/aif/plot_dummy.py
deleted file mode 100755
index 13cbac2..0000000
--- a/docs/source/generated/examples/aif/plot_dummy.py
+++ /dev/null
@@ -1,51 +0,0 @@
-"""
-==============
-A dummy script
-==============
-
-Dummy script to illustrate structure of examples folder
-"""
-
-import matplotlib.pyplot as plt
-
-# %%
-# Import necessary packages
-import numpy as np
-import osipi
-
-# %%
-# Generate synthetic AIF with default settings and plot the result.
-
-# Define time points in units of seconds - in this case we use a time
-# resolution of 0.5 sec and a total duration of 6 minutes.
-t = np.arange(0, 6 * 60, 0.5)
-
-# Create an AIF with default settings
-ca = osipi.aif_parker(t)
-
-# Plot the AIF over the full range
-plt.plot(t, ca, "r-")
-plt.plot(t, 0 * t, "k-")
-plt.xlabel("Time (sec)")
-plt.ylabel("Plasma concentration (mM)")
-plt.show()
-
-# %%
-# The bolus arrival time (BAT) defaults to 30s. What happens if we
-# change it? Let's try, by changing it in steps of 30s:
-
-ca = osipi.aif_parker(t, BAT=0)
-plt.plot(t, ca, "b-", label="BAT = 0s")
-ca = osipi.aif_parker(t, BAT=30)
-plt.plot(t, ca, "r-", label="BAT = 30s")
-ca = osipi.aif_parker(t, BAT=60)
-plt.plot(t, ca, "g-", label="BAT = 60s")
-ca = osipi.aif_parker(t, BAT=90)
-plt.plot(t, ca, "m-", label="BAT = 90s")
-plt.xlabel("Time (sec)")
-plt.ylabel("Plasma concentration (mM)")
-plt.legend()
-plt.show()
-
-# Choose the last image as a thumbnail for the gallery
-# sphinx_gallery_thumbnail_number = -1
diff --git a/docs/source/generated/examples/aif/plot_dummy.py.md5 b/docs/source/generated/examples/aif/plot_dummy.py.md5
deleted file mode 100755
index 7c38a5e..0000000
--- a/docs/source/generated/examples/aif/plot_dummy.py.md5
+++ /dev/null
@@ -1 +0,0 @@
-3393738ee0ad511916ee690ca9a231be
diff --git a/docs/source/generated/examples/aif/plot_dummy.rst b/docs/source/generated/examples/aif/plot_dummy.rst
deleted file mode 100755
index 5d43ebc..0000000
--- a/docs/source/generated/examples/aif/plot_dummy.rst
+++ /dev/null
@@ -1,144 +0,0 @@
-
-.. DO NOT EDIT.
-.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
-.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "generated/examples/aif/plot_dummy.py"
-.. LINE NUMBERS ARE GIVEN BELOW.
-
-.. only:: html
-
-    .. note::
-        :class: sphx-glr-download-link-note
-
-        :ref:`Go to the end <sphx_glr_download_generated_examples_aif_plot_dummy.py>`
-        to download the full example code
-
-.. rst-class:: sphx-glr-example-title
-
-.. _sphx_glr_generated_examples_aif_plot_dummy.py:
-
-
-==============
-A dummy script
-==============
-
-Dummy script to illustrate structure of examples folder
-
-.. GENERATED FROM PYTHON SOURCE LINES 10-11
-
-Import necessary packages
-
-.. GENERATED FROM PYTHON SOURCE LINES 11-15
-
-.. code-block:: default
-
-    import numpy as np
-    import matplotlib.pyplot as plt
-    import osipi
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 16-17
-
-Generate synthetic AIF with default settings and plot the result.
-
-.. GENERATED FROM PYTHON SOURCE LINES 17-31
-
-.. code-block:: default
-
-
-    # Define time points in units of seconds - in this case we use a time resolution of 0.5 sec and a total duration of 6 minutes.
-    t = np.arange(0, 6*60, 0.5)
-
-    # Create an AIF with default settings
-    ca = osipi.aif_parker(t)
-
-    # Plot the AIF over the full range
-    plt.plot(t, ca, 'r-')
-    plt.plot(t, 0*t, 'k-')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Plasma concentration (mM)')
-    plt.show()
-
-
-
-
-.. image-sg:: /generated/examples/aif/images/sphx_glr_plot_dummy_001.png
-   :alt: plot dummy
-   :srcset: /generated/examples/aif/images/sphx_glr_plot_dummy_001.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 32-33
-
-The bolus arrival time (BAT) defaults to 30s. What happens if we change it? Let's try, by changing it in steps of 30s:
-
-.. GENERATED FROM PYTHON SOURCE LINES 33-49
-
-.. code-block:: default
-
-
-    ca = osipi.aif_parker(t, BAT=0)
-    plt.plot(t, ca, 'b-', label='BAT = 0s')
-    ca = osipi.aif_parker(t, BAT=30)
-    plt.plot(t, ca, 'r-', label='BAT = 30s')
-    ca = osipi.aif_parker(t, BAT=60)
-    plt.plot(t, ca, 'g-', label='BAT = 60s')
-    ca = osipi.aif_parker(t, BAT=90)
-    plt.plot(t, ca, 'm-', label='BAT = 90s')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Plasma concentration (mM)')
-    plt.legend()
-    plt.show()
-
-    # Choose the last image as a thumbnail for the gallery
-    # sphinx_gallery_thumbnail_number = -1
-
-
-
-.. image-sg:: /generated/examples/aif/images/sphx_glr_plot_dummy_002.png
-   :alt: plot dummy
-   :srcset: /generated/examples/aif/images/sphx_glr_plot_dummy_002.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** (0 minutes 0.078 seconds)
-
-
-.. _sphx_glr_download_generated_examples_aif_plot_dummy.py:
-
-.. only:: html
-
-  .. container:: sphx-glr-footer sphx-glr-footer-example
-
-
-
-
-    .. container:: sphx-glr-download sphx-glr-download-python
-
-      :download:`Download Python source code: plot_dummy.py <plot_dummy.py>`
-
-    .. container:: sphx-glr-download sphx-glr-download-jupyter
-
-      :download:`Download Jupyter notebook: plot_dummy.ipynb <plot_dummy.ipynb>`
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/docs/source/generated/examples/aif/plot_dummy_codeobj.pickle b/docs/source/generated/examples/aif/plot_dummy_codeobj.pickle
deleted file mode 100755
index 7f1df19..0000000
Binary files a/docs/source/generated/examples/aif/plot_dummy_codeobj.pickle and /dev/null differ
diff --git a/docs/source/generated/examples/aif/sg_execution_times.rst b/docs/source/generated/examples/aif/sg_execution_times.rst
deleted file mode 100755
index de64540..0000000
--- a/docs/source/generated/examples/aif/sg_execution_times.rst
+++ /dev/null
@@ -1,15 +0,0 @@
-
-:orphan:
-
-.. _sphx_glr_generated_examples_aif_sg_execution_times:
-
-
-Computation times
-=================
-**00:00.188** total execution time for **generated_examples_aif** files:
-
-+------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_generated_examples_aif_plot_aif_parker.py` (``plot_aif_parker.py``) | 00:00.110 | 0.0 MB |
-+------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_generated_examples_aif_plot_dummy.py` (``plot_dummy.py``)           | 00:00.078 | 0.0 MB |
-+------------------------------------------------------------------------------------+-----------+--------+
diff --git a/docs/source/generated/examples/index.rst b/docs/source/generated/examples/index.rst
deleted file mode 100755
index 8172642..0000000
--- a/docs/source/generated/examples/index.rst
+++ /dev/null
@@ -1,139 +0,0 @@
-:orphan:
-
-########
-Examples
-########
-
-Illustrating common use cases of osipi.
-
-
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    </div>
-
-************************
-Arterial Input Functions
-************************
-
-
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating a Parker AIF with different settings. ">
-
-.. only:: html
-
-  .. image:: /generated/examples/aif/images/thumb/sphx_glr_plot_aif_parker_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_aif_plot_aif_parker.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Parker AIF - a play with variables</div>
-    </div>
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Dummy script to illustrate structure of examples folder ">
-
-.. only:: html
-
-  .. image:: /generated/examples/aif/images/thumb/sphx_glr_plot_dummy_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_aif_plot_dummy.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">A dummy script</div>
-    </div>
-
-
-.. raw:: html
-
-    </div>
-
-*********************
-Tissue concentrations
-*********************
-
-
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Tofts model</div>
-    </div>
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from extended Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Extended Tofts model</div>
-    </div>
-
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-   :includehidden:
-
-
-   /generated/examples/aif/index.rst
-   /generated/examples/tissue/index.rst
-
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/docs/source/generated/examples/sg_execution_times.rst b/docs/source/generated/examples/sg_execution_times.rst
deleted file mode 100755
index e8da946..0000000
--- a/docs/source/generated/examples/sg_execution_times.rst
+++ /dev/null
@@ -1,37 +0,0 @@
-
-:orphan:
-
-.. _sphx_glr_generated_examples_sg_execution_times:
-
-
-Computation times
-=================
-**00:00.000** total execution time for 0 files **from generated/examples**:
-
-.. container::
-
-  .. raw:: html
-
-    <style scoped>
-    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
-    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
-    </style>
-    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
-    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
-    <script type="text/javascript" class="init">
-    $(document).ready( function () {
-        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
-    } );
-    </script>
-
-  .. list-table::
-   :header-rows: 1
-   :class: table table-striped sg-datatable
-
-   * - Example
-     - Time
-     - Mem (MB)
-   * - N/A
-     - N/A
-     - N/A
diff --git a/docs/source/generated/examples/tissue/images/sphx_glr_plot_extended_tofts_001.png b/docs/source/generated/examples/tissue/images/sphx_glr_plot_extended_tofts_001.png
deleted file mode 100755
index 7946b14..0000000
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deleted file mode 100755
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diff --git a/docs/source/generated/examples/tissue/images/sphx_glr_plot_tofts_001.png b/docs/source/generated/examples/tissue/images/sphx_glr_plot_tofts_001.png
deleted file mode 100755
index ba5f383..0000000
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diff --git a/docs/source/generated/examples/tissue/images/sphx_glr_plot_tofts_002.png b/docs/source/generated/examples/tissue/images/sphx_glr_plot_tofts_002.png
deleted file mode 100755
index 49b1ccd..0000000
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diff --git a/docs/source/generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png b/docs/source/generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png
deleted file mode 100755
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diff --git a/docs/source/generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png b/docs/source/generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png
deleted file mode 100755
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Binary files a/docs/source/generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png and /dev/null differ
diff --git a/docs/source/generated/examples/tissue/index.rst b/docs/source/generated/examples/tissue/index.rst
deleted file mode 100755
index a1b6f62..0000000
--- a/docs/source/generated/examples/tissue/index.rst
+++ /dev/null
@@ -1,61 +0,0 @@
-
-
-.. _sphx_glr_generated_examples_tissue:
-
-*********************
-Tissue concentrations
-*********************
-
-
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbnails">
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Tofts model</div>
-    </div>
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Simulating tissue concentrations from extended Tofts model with different settings.">
-
-.. only:: html
-
-  .. image:: /generated/examples/tissue/images/thumb/sphx_glr_plot_extended_tofts_thumb.png
-    :alt:
-
-  :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py`
-
-.. raw:: html
-
-      <div class="sphx-glr-thumbnail-title">The Extended Tofts model</div>
-    </div>
-
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /generated/examples/tissue/plot_tofts
-   /generated/examples/tissue/plot_extended_tofts
diff --git a/docs/source/generated/examples/tissue/plot_extended_tofts.ipynb b/docs/source/generated/examples/tissue/plot_extended_tofts.ipynb
deleted file mode 100755
index 52b04cd..0000000
--- a/docs/source/generated/examples/tissue/plot_extended_tofts.ipynb
+++ /dev/null
@@ -1,133 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "\n# The Extended Tofts model\n\nSimulating tissue concentrations from extended Tofts model with different settings.\n"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Import necessary packages\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "import numpy as np\n",
-    "import matplotlib.pyplot as plt\n",
-    "import osipi"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Generate Parker AIF with default settings.\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "# Define time points in units of seconds - in this case we use a time resolution of 1 sec and a total duration of 6 minutes.\n",
-    "t = np.arange(0, 6 * 60, 1)\n",
-    "\n",
-    "# Create an AIF with default settings\n",
-    "ca = osipi.aif_parker(t)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Plot the tissue concentrations for an extracellular volume fraction of 0.2 and 3 different plasma volumes of 0.05, 0.2 and 0.6\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "Ktrans = 0.2  # in units of 1/min\n",
-    "ve = 0.2  # volume fraction between 0 and 1\n",
-    "vp = [0.05, 0.2, 0.6]  # volume fraction between 0 and 1\n",
-    "ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0])\n",
-    "plt.plot(t, ct, \"b-\", label=f\"vp = {vp[0]}\")\n",
-    "ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[1])\n",
-    "plt.plot(t, ct, \"g-\", label=f\"vp = {vp[1]}\")\n",
-    "ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[2])\n",
-    "plt.plot(t, ct, \"m-\", label=f\"vp = {vp[2]}\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Tissue concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Comparing different discretization methods for an extracellular volume fraction of 0.2, Ktrans of 0.2 /min and vp of 0.05\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0])  # Defaults to Convolution\n",
-    "plt.plot(t, ct, \"b-\", label=\"Convolution\")\n",
-    "ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0], discretization_method=\"exp\")\n",
-    "plt.plot(t, ct, \"g-\", label=\"Exponential Convolution\")\n",
-    "plt.title(f\"Ktrans = {Ktrans} /min\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Tissue concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()\n",
-    "\n",
-    "# Choose the last image as a thumbnail for the gallery\n",
-    "# sphinx_gallery_thumbnail_number = -1"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.11.2"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 0
-}
diff --git a/docs/source/generated/examples/tissue/plot_extended_tofts.py b/docs/source/generated/examples/tissue/plot_extended_tofts.py
deleted file mode 100755
index f2df6fb..0000000
--- a/docs/source/generated/examples/tissue/plot_extended_tofts.py
+++ /dev/null
@@ -1,57 +0,0 @@
-"""
-====================
-The Extended Tofts model
-====================
-
-Simulating tissue concentrations from extended Tofts model with different settings.
-"""
-
-import matplotlib.pyplot as plt
-
-# %%
-# Import necessary packages
-import numpy as np
-import osipi
-
-# %%
-# Generate Parker AIF with default settings.
-
-# Define time points in units of seconds - in this case we use a time
-# resolution of 1 sec and a total duration of 6 minutes.
-t = np.arange(0, 6 * 60, 1)
-
-# Create an AIF with default settings
-ca = osipi.aif_parker(t)
-
-# %%
-# Plot the tissue concentrations for an extracellular volume fraction
-# of 0.2 and 3 different plasma volumes of 0.05, 0.2 and 0.6
-Ktrans = 0.2  # in units of 1/min
-ve = 0.2  # volume fraction between 0 and 1
-vp = [0.05, 0.2, 0.6]  # volume fraction between 0 and 1
-ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0])
-plt.plot(t, ct, "b-", label=f"vp = {vp[0]}")
-ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[1])
-plt.plot(t, ct, "g-", label=f"vp = {vp[1]}")
-ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[2])
-plt.plot(t, ct, "m-", label=f"vp = {vp[2]}")
-plt.xlabel("Time (sec)")
-plt.ylabel("Tissue concentration (mM)")
-plt.legend()
-plt.show()
-
-# %%
-# Comparing different discretization methods for an extracellular
-# volume fraction of 0.2, Ktrans of 0.2 /min and vp of 0.05
-ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0])  # Defaults to Convolution
-plt.plot(t, ct, "b-", label="Convolution")
-ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0], discretization_method="exp")
-plt.plot(t, ct, "g-", label="Exponential Convolution")
-plt.title(f"Ktrans = {Ktrans} /min")
-plt.xlabel("Time (sec)")
-plt.ylabel("Tissue concentration (mM)")
-plt.legend()
-plt.show()
-
-# Choose the last image as a thumbnail for the gallery
-# sphinx_gallery_thumbnail_number = -1
diff --git a/docs/source/generated/examples/tissue/plot_extended_tofts.py.md5 b/docs/source/generated/examples/tissue/plot_extended_tofts.py.md5
deleted file mode 100755
index ec1a537..0000000
--- a/docs/source/generated/examples/tissue/plot_extended_tofts.py.md5
+++ /dev/null
@@ -1 +0,0 @@
-fe125cfe0a7b9603e82149422673111f
diff --git a/docs/source/generated/examples/tissue/plot_extended_tofts.rst b/docs/source/generated/examples/tissue/plot_extended_tofts.rst
deleted file mode 100755
index 3fc70b2..0000000
--- a/docs/source/generated/examples/tissue/plot_extended_tofts.rst
+++ /dev/null
@@ -1,159 +0,0 @@
-
-.. DO NOT EDIT.
-.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
-.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "generated/examples/tissue/plot_extended_tofts.py"
-.. LINE NUMBERS ARE GIVEN BELOW.
-
-.. only:: html
-
-    .. note::
-        :class: sphx-glr-download-link-note
-
-        :ref:`Go to the end <sphx_glr_download_generated_examples_tissue_plot_extended_tofts.py>`
-        to download the full example code
-
-.. rst-class:: sphx-glr-example-title
-
-.. _sphx_glr_generated_examples_tissue_plot_extended_tofts.py:
-
-
-========================
-The Extended Tofts model
-========================
-
-Simulating tissue concentrations from extended Tofts model with different settings.
-
-.. GENERATED FROM PYTHON SOURCE LINES 10-11
-
-Import necessary packages
-
-.. GENERATED FROM PYTHON SOURCE LINES 11-15
-
-.. code-block:: Python
-
-    import numpy as np
-    import matplotlib.pyplot as plt
-    import osipi
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 16-17
-
-Generate Parker AIF with default settings.
-
-.. GENERATED FROM PYTHON SOURCE LINES 17-24
-
-.. code-block:: Python
-
-
-    # Define time points in units of seconds - in this case we use a time resolution of 1 sec and a total duration of 6 minutes.
-    t = np.arange(0, 6*60, 1)
-
-    # Create an AIF with default settings
-    ca = osipi.aif_parker(t)
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 25-26
-
-Plot the tissue concentrations for an extracellular volume fraction of 0.2 and 3 different plasma volumes of 0.05, 0.2 and 0.6
-
-.. GENERATED FROM PYTHON SOURCE LINES 26-40
-
-.. code-block:: Python
-
-    Ktrans = 0.2 # in units of 1/min
-    ve = 0.2  # volume fraction between 0 and 1
-    vp = [0.05, 0.2, 0.6] # volume fraction between 0 and 1
-    ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0])
-    plt.plot(t, ct, 'b-', label=f'vp = {vp[0]}')
-    ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[1])
-    plt.plot(t, ct, 'g-', label=f'vp = {vp[1]}')
-    ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[2])
-    plt.plot(t, ct, 'm-', label=f'vp = {vp[2]}')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Tissue concentration (mM)')
-    plt.legend()
-    plt.show()
-
-
-
-
-.. image-sg:: /generated/examples/tissue/images/sphx_glr_plot_extended_tofts_001.png
-   :alt: plot extended tofts
-   :srcset: /generated/examples/tissue/images/sphx_glr_plot_extended_tofts_001.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 41-42
-
-Comparing different discretization methods for an extracellular volume fraction of 0.2, Ktrans of 0.2 /min and vp of 0.05
-
-.. GENERATED FROM PYTHON SOURCE LINES 42-54
-
-.. code-block:: Python
-
-    ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0]) # Defaults to Convolution
-    plt.plot(t, ct, 'b-', label='Convolution')
-    ct = osipi.extended_tofts(t, ca, Ktrans, ve, vp[0], discretization_method='exp')
-    plt.plot(t, ct, 'g-', label='Exponential Convolution')
-    plt.title(f'Ktrans = {Ktrans} /min')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Tissue concentration (mM)')
-    plt.legend()
-    plt.show()
-
-    # Choose the last image as a thumbnail for the gallery
-    # sphinx_gallery_thumbnail_number = -1
-
-
-
-.. image-sg:: /generated/examples/tissue/images/sphx_glr_plot_extended_tofts_002.png
-   :alt: Ktrans = 0.2 /min
-   :srcset: /generated/examples/tissue/images/sphx_glr_plot_extended_tofts_002.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** (0 minutes 0.113 seconds)
-
-
-.. _sphx_glr_download_generated_examples_tissue_plot_extended_tofts.py:
-
-.. only:: html
-
-  .. container:: sphx-glr-footer sphx-glr-footer-example
-
-    .. container:: sphx-glr-download sphx-glr-download-jupyter
-
-      :download:`Download Jupyter notebook: plot_extended_tofts.ipynb <plot_extended_tofts.ipynb>`
-
-    .. container:: sphx-glr-download sphx-glr-download-python
-
-      :download:`Download Python source code: plot_extended_tofts.py <plot_extended_tofts.py>`
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/docs/source/generated/examples/tissue/plot_extended_tofts_codeobj.pickle b/docs/source/generated/examples/tissue/plot_extended_tofts_codeobj.pickle
deleted file mode 100755
index b503898..0000000
Binary files a/docs/source/generated/examples/tissue/plot_extended_tofts_codeobj.pickle and /dev/null differ
diff --git a/docs/source/generated/examples/tissue/plot_tofts.ipynb b/docs/source/generated/examples/tissue/plot_tofts.ipynb
deleted file mode 100755
index 91cda66..0000000
--- a/docs/source/generated/examples/tissue/plot_tofts.ipynb
+++ /dev/null
@@ -1,132 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "\n# The Tofts model\n\nSimulating tissue concentrations from Tofts model with different settings.\n"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Import necessary packages\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "import numpy as np\n",
-    "import matplotlib.pyplot as plt\n",
-    "import osipi"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Generate Parker AIF with default settings.\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "# Define time points in units of seconds - in this case we use a time resolution of 1 sec and a total duration of 6 minutes.\n",
-    "t = np.arange(0, 6 * 60, 1)\n",
-    "\n",
-    "# Create an AIF with default settings\n",
-    "ca = osipi.aif_parker(t)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Plot the tissue concentrations for an extracellular volume fraction of 0.2 and 3 different transfer rate constants of 0.05, 0.2 and 0.6 /min\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "Ktrans = [0.05, 0.2, 0.6]  # in units of 1/min\n",
-    "ve = 0.2  # volume fraction between 0 and 1\n",
-    "ct = osipi.tofts(t, ca, Ktrans=Ktrans[0], ve=ve)\n",
-    "plt.plot(t, ct, \"b-\", label=f\"Ktrans = {Ktrans[0]} /min\")\n",
-    "ct = osipi.tofts(t, ca, Ktrans[1], ve)\n",
-    "plt.plot(t, ct, \"g-\", label=f\"Ktrans = {Ktrans[1]} /min\")\n",
-    "ct = osipi.tofts(t, ca, Ktrans[2], ve)\n",
-    "plt.plot(t, ct, \"m-\", label=f\"Ktrans = {Ktrans[2]} /min\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Tissue concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "Comparing different discretization methods for an extracellular volume fraction of 0.2 and Ktrans of 0.2 /min\n\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve)  # Defaults to Convolution\n",
-    "plt.plot(t, ct, \"b-\", label=\"Convolution\")\n",
-    "ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve, discretization_method=\"exp\")\n",
-    "plt.plot(t, ct, \"g-\", label=\"Exponential Convolution\")\n",
-    "plt.title(f\"Ktrans = {Ktrans[1]} /min\")\n",
-    "plt.xlabel(\"Time (sec)\")\n",
-    "plt.ylabel(\"Tissue concentration (mM)\")\n",
-    "plt.legend()\n",
-    "plt.show()\n",
-    "\n",
-    "# Choose the last image as a thumbnail for the gallery\n",
-    "# sphinx_gallery_thumbnail_number = -1"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.9.16"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 0
-}
diff --git a/docs/source/generated/examples/tissue/plot_tofts.py b/docs/source/generated/examples/tissue/plot_tofts.py
deleted file mode 100755
index d623da9..0000000
--- a/docs/source/generated/examples/tissue/plot_tofts.py
+++ /dev/null
@@ -1,57 +0,0 @@
-"""
-====================
-The Tofts model
-====================
-
-Simulating tissue concentrations from Tofts model with different settings.
-"""
-
-import matplotlib.pyplot as plt
-
-# %%
-# Import necessary packages
-import numpy as np
-import osipi
-
-# %%
-# Generate Parker AIF with default settings.
-
-# Define time points in units of seconds - in this case we use a time
-# resolution of 1 sec and a total duration of 6 minutes.
-t = np.arange(0, 6 * 60, 1)
-
-# Create an AIF with default settings
-ca = osipi.aif_parker(t)
-
-# %%
-# Plot the tissue concentrations for an extracellular volume fraction
-# of 0.2 and 3 different transfer rate constants of 0.05, 0.2 and 0.6
-# /min
-Ktrans = [0.05, 0.2, 0.6]  # in units of 1/min
-ve = 0.2  # volume fraction between 0 and 1
-ct = osipi.tofts(t, ca, Ktrans=Ktrans[0], ve=ve)
-plt.plot(t, ct, "b-", label=f"Ktrans = {Ktrans[0]} /min")
-ct = osipi.tofts(t, ca, Ktrans[1], ve)
-plt.plot(t, ct, "g-", label=f"Ktrans = {Ktrans[1]} /min")
-ct = osipi.tofts(t, ca, Ktrans[2], ve)
-plt.plot(t, ct, "m-", label=f"Ktrans = {Ktrans[2]} /min")
-plt.xlabel("Time (sec)")
-plt.ylabel("Tissue concentration (mM)")
-plt.legend()
-plt.show()
-
-# %%
-# Comparing different discretization methods for an extracellular
-# volume fraction of 0.2 and Ktrans of 0.2 /min
-ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve)  # Defaults to Convolution
-plt.plot(t, ct, "b-", label="Convolution")
-ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve, discretization_method="exp")
-plt.plot(t, ct, "g-", label="Exponential Convolution")
-plt.title(f"Ktrans = {Ktrans[1]} /min")
-plt.xlabel("Time (sec)")
-plt.ylabel("Tissue concentration (mM)")
-plt.legend()
-plt.show()
-
-# Choose the last image as a thumbnail for the gallery
-# sphinx_gallery_thumbnail_number = -1
diff --git a/docs/source/generated/examples/tissue/plot_tofts.py.md5 b/docs/source/generated/examples/tissue/plot_tofts.py.md5
deleted file mode 100755
index 10b2daf..0000000
--- a/docs/source/generated/examples/tissue/plot_tofts.py.md5
+++ /dev/null
@@ -1 +0,0 @@
-562f87655efc9f9b885f617d06bc5dba
diff --git a/docs/source/generated/examples/tissue/plot_tofts.rst b/docs/source/generated/examples/tissue/plot_tofts.rst
deleted file mode 100755
index bd7378d..0000000
--- a/docs/source/generated/examples/tissue/plot_tofts.rst
+++ /dev/null
@@ -1,161 +0,0 @@
-
-.. DO NOT EDIT.
-.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
-.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "generated/examples/tissue/plot_tofts.py"
-.. LINE NUMBERS ARE GIVEN BELOW.
-
-.. only:: html
-
-    .. note::
-        :class: sphx-glr-download-link-note
-
-        :ref:`Go to the end <sphx_glr_download_generated_examples_tissue_plot_tofts.py>`
-        to download the full example code
-
-.. rst-class:: sphx-glr-example-title
-
-.. _sphx_glr_generated_examples_tissue_plot_tofts.py:
-
-
-====================
-The Tofts model
-====================
-
-Simulating tissue concentrations from Tofts model with different settings.
-
-.. GENERATED FROM PYTHON SOURCE LINES 10-11
-
-Import necessary packages
-
-.. GENERATED FROM PYTHON SOURCE LINES 11-15
-
-.. code-block:: default
-
-    import numpy as np
-    import matplotlib.pyplot as plt
-    import osipi
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 16-17
-
-Generate Parker AIF with default settings.
-
-.. GENERATED FROM PYTHON SOURCE LINES 17-24
-
-.. code-block:: default
-
-
-    # Define time points in units of seconds - in this case we use a time resolution of 1 sec and a total duration of 6 minutes.
-    t = np.arange(0, 6*60, 1)
-
-    # Create an AIF with default settings
-    ca = osipi.aif_parker(t)
-
-
-
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 25-26
-
-Plot the tissue concentrations for an extracellular volume fraction of 0.2 and 3 different transfer rate constants of 0.05, 0.2 and 0.6 /min
-
-.. GENERATED FROM PYTHON SOURCE LINES 26-39
-
-.. code-block:: default
-
-    Ktrans = [0.05, 0.2, 0.6]  # in units of 1/min
-    ve = 0.2  # volume fraction between 0 and 1
-    ct = osipi.tofts(t, ca, Ktrans=Ktrans[0], ve=ve)
-    plt.plot(t, ct, 'b-', label=f'Ktrans = {Ktrans[0]} /min')
-    ct = osipi.tofts(t, ca, Ktrans[1], ve)
-    plt.plot(t, ct, 'g-', label=f'Ktrans = {Ktrans[1]} /min')
-    ct = osipi.tofts(t, ca, Ktrans[2], ve)
-    plt.plot(t, ct, 'm-', label=f'Ktrans = {Ktrans[2]} /min')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Tissue concentration (mM)')
-    plt.legend()
-    plt.show()
-
-
-
-
-.. image-sg:: /generated/examples/tissue/images/sphx_glr_plot_tofts_001.png
-   :alt: plot tofts
-   :srcset: /generated/examples/tissue/images/sphx_glr_plot_tofts_001.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-.. GENERATED FROM PYTHON SOURCE LINES 40-41
-
-Comparing different discretization methods for an extracellular volume fraction of 0.2 and Ktrans of 0.2 /min
-
-.. GENERATED FROM PYTHON SOURCE LINES 41-53
-
-.. code-block:: default
-
-    ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve) # Defaults to Convolution
-    plt.plot(t, ct, 'b-', label='Convolution')
-    ct = osipi.tofts(t, ca, Ktrans=Ktrans[1], ve=ve, discretization_method='exp')
-    plt.plot(t, ct, 'g-', label='Exponential Convolution')
-    plt.title(f'Ktrans = {Ktrans[1]} /min')
-    plt.xlabel('Time (sec)')
-    plt.ylabel('Tissue concentration (mM)')
-    plt.legend()
-    plt.show()
-
-    # Choose the last image as a thumbnail for the gallery
-    # sphinx_gallery_thumbnail_number = -1
-
-
-
-.. image-sg:: /generated/examples/tissue/images/sphx_glr_plot_tofts_002.png
-   :alt: Ktrans = 0.2 /min
-   :srcset: /generated/examples/tissue/images/sphx_glr_plot_tofts_002.png
-   :class: sphx-glr-single-img
-
-
-
-
-
-
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** (0 minutes 0.093 seconds)
-
-
-.. _sphx_glr_download_generated_examples_tissue_plot_tofts.py:
-
-.. only:: html
-
-  .. container:: sphx-glr-footer sphx-glr-footer-example
-
-
-
-
-    .. container:: sphx-glr-download sphx-glr-download-python
-
-      :download:`Download Python source code: plot_tofts.py <plot_tofts.py>`
-
-    .. container:: sphx-glr-download sphx-glr-download-jupyter
-
-      :download:`Download Jupyter notebook: plot_tofts.ipynb <plot_tofts.ipynb>`
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/docs/source/generated/examples/tissue/plot_tofts_codeobj.pickle b/docs/source/generated/examples/tissue/plot_tofts_codeobj.pickle
deleted file mode 100755
index dfbf690..0000000
Binary files a/docs/source/generated/examples/tissue/plot_tofts_codeobj.pickle and /dev/null differ
diff --git a/docs/source/generated/examples/tissue/sg_execution_times.rst b/docs/source/generated/examples/tissue/sg_execution_times.rst
deleted file mode 100755
index d653090..0000000
--- a/docs/source/generated/examples/tissue/sg_execution_times.rst
+++ /dev/null
@@ -1,40 +0,0 @@
-
-:orphan:
-
-.. _sphx_glr_generated_examples_tissue_sg_execution_times:
-
-
-Computation times
-=================
-**00:00.113** total execution time for 2 files **from generated/examples/tissue**:
-
-.. container::
-
-  .. raw:: html
-
-    <style scoped>
-    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
-    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
-    </style>
-    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
-    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
-    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
-    <script type="text/javascript" class="init">
-    $(document).ready( function () {
-        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
-    } );
-    </script>
-
-  .. list-table::
-   :header-rows: 1
-   :class: table table-striped sg-datatable
-
-   * - Example
-     - Time
-     - Mem (MB)
-   * - :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py` (``plot_extended_tofts.py``)
-     - 00:00.113
-     - 0.0
-   * - :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py` (``plot_tofts.py``)
-     - 00:00.000
-     - 0.0
diff --git a/docs/source/sg_execution_times.rst b/docs/source/sg_execution_times.rst
index 2f4c88e..2effc0a 100755
--- a/docs/source/sg_execution_times.rst
+++ b/docs/source/sg_execution_times.rst
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.113** total execution time for 4 files **from all galleries**:
+**00:00.580** total execution time for 4 files **from all galleries**:
 
 .. container::
 
@@ -32,15 +32,15 @@ Computation times
    * - Example
      - Time
      - Mem (MB)
-   * - :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py` (``../examples/tissue/plot_extended_tofts.py``)
-     - 00:00.113
+   * - :ref:`sphx_glr_generated_examples_aif_plot_aif_parker.py` (``..\examples\aif\plot_aif_parker.py``)
+     - 00:00.183
      - 0.0
-   * - :ref:`sphx_glr_generated_examples_aif_plot_aif_parker.py` (``../examples/aif/plot_aif_parker.py``)
-     - 00:00.000
+   * - :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py` (``..\examples\tissue\plot_tofts.py``)
+     - 00:00.143
      - 0.0
-   * - :ref:`sphx_glr_generated_examples_aif_plot_dummy.py` (``../examples/aif/plot_dummy.py``)
-     - 00:00.000
+   * - :ref:`sphx_glr_generated_examples_tissue_plot_extended_tofts.py` (``..\examples\tissue\plot_extended_tofts.py``)
+     - 00:00.136
      - 0.0
-   * - :ref:`sphx_glr_generated_examples_tissue_plot_tofts.py` (``../examples/tissue/plot_tofts.py``)
-     - 00:00.000
+   * - :ref:`sphx_glr_generated_examples_aif_plot_dummy.py` (``..\examples\aif\plot_dummy.py``)
+     - 00:00.118
      - 0.0
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 0000000..0675c73
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,1926 @@
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
+
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+description = "A collection of accessible pygments styles"
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+
+[package.extras]
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+tests = ["hypothesis", "pytest"]
+
+[[package]]
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+
+[metadata]
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diff --git a/pyproject.toml b/pyproject.toml
index d825d4b..595895a 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -100,3 +100,41 @@ line-ending = "auto"
 docstring-code-format = false
 
 docstring-code-line-length = "dynamic"
+
+[tool.poetry]
+name = "osipi"
+version = "0.1.2"
+description = "The authorative python package for perfusion MRI"
+authors = ["Luis Torres <luistorres@flywheel.io>", "Steven Sourbron <s.sourborn@sheffield.ac.uk>"]
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "^3.9"
+numpy = "^1.21.2"
+scipy = "^1.7.3"
+matplotlib = "^3.4.3"
+requests = "^2.32.3"
+
+[tool.poetry.group.dev.dependencies]
+flake8 = "^7.0.0"
+pre-commit = "^3.7.1"
+pytest = "^8.2.2"
+pytest-cov = "^5.0.0"
+
+[tool.poetry.group.docs.dependencies]
+sphinx = "^7.3.7"
+autodocsumm = "^0.2.12"
+docutils = "^0.21.2"
+myst-parser = "^3.0.1"
+pydata-sphinx-theme = "^0.15.3"
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+sphinxcontrib-qthelp = "^1.0.7"
+sphinxcontrib-serializinghtml = "^1.1.10"
+sphinx-gallery = "^0.16.0"
+rstcheck = {extras = ["sphinx"], version = "^6.2.1"}