From 511af07c4f7845c71c6559fd3c1d52dc0859a3bc Mon Sep 17 00:00:00 2001 From: David Landa Marban Date: Thu, 5 Dec 2024 10:18:31 +0100 Subject: [PATCH] Fixing Python3.8 support --- CONTRIBUTING.md | 3 ++- docs/_sources/configuration_file.rst.txt | 5 +++-- docs/_sources/contributing.rst.txt | 6 ++++-- docs/_sources/examples.rst.txt | 2 +- docs/configuration_file.html | 5 +++-- docs/contributing.html | 5 +++-- docs/examples.html | 2 +- docs/searchindex.js | 2 +- docs/text/configuration_file.rst | 5 +++-- docs/text/contributing.rst | 6 ++++-- docs/text/examples.rst | 2 +- src/pyopmspe11/utils/inputvalues.py | 15 ++++++++++++++- tests/test_0_input_format.py | 9 +++++++++ 13 files changed, 49 insertions(+), 18 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index cb45d43..f894367 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -9,6 +9,7 @@ Contributions are more than welcome using the fork and pull request approach - We document our code ## Contribute to the software +This requires a Python version of at least 3.11 (due to [_tomllib_](https://toml.io/en/)). 1. Work on your own fork of the main repo 1. In the main repo execute: @@ -18,7 +19,7 @@ Contributions are more than welcome using the fork and pull request approach 1. **mypy --ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) 1. **pytest --cov=pyopmspe11 --cov-report term-missing tests/** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) 1. **pushd docs & make html** (this generates the documentation, and might rise issues that need to be fixed before the pull request; if the build succeeds and if the contribution changes the documentation, then delete all content from the [_docs_](https://github.com/cssr-tools/pyopmspe11/tree/main/docs) folder except [_Makefile_](https://github.com/OPM/pyopmspe11/blob/main/docs/Makefile), [_text_](https://github.com/OPM/pyopmspe11/blob/main/docs/text), and [_.nojekyll_](https://github.com/OPM/pyopmspe11/blob/main/docs/.nojekyll), after copy all contents from the docs/_build/html/ folder, and finally paste them in the [_docs_](https://github.com/cssr-tools/pyopmspe11/tree/main/docs) folder) - * Tip: See the [_CI.yml_](https://github.com/cssr-tools/pyopmspe11/blob/main/.github/workflows/CI.yml) script and the [_Actions_](https://github.com/cssr-tools/pyopmspe11/actions) for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10. + * Tip: See the [_CI.yml_](https://github.com/cssr-tools/pyopmspe11/blob/main/.github/workflows/CI.yml) script and the [_Actions_](https://github.com/cssr-tools/pyopmspe11/actions) for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10 using Python3.11. 1. Squash your commits into a single commit (see this [_nice tutorial_](https://gist.github.com/lpranam/4ae996b0a4bc37448dc80356efbca7fa) if you are not familiar with this) 1. Push your commit and make a pull request 1. The maintainers will review the pull request, and if the contribution is accepted, then it will be merge to the main repo diff --git a/docs/_sources/configuration_file.rst.txt b/docs/_sources/configuration_file.rst.txt index bf6cac0..a627889 100644 --- a/docs/_sources/configuration_file.rst.txt +++ b/docs/_sources/configuration_file.rst.txt @@ -4,8 +4,9 @@ Configuration file In the initial development of **pyopmspe11**, the adopted configuration file format was the one described below, i.e., via :ref:`txt` files. The current development of **pyopmspe11** considers -:ref:`toml` files. To keep compatibility with previous configuration files, then support for :ref:`txt` files -will be kept, while new features will by added using :ref:`toml` configuration files. +:ref:`toml` files. To keep compatibility with previous configuration files and Python versions of at least 3.8, +then support for :ref:`txt` files will be kept, while new features will by added using :ref:`toml` configuration +files (which requires at least Python3.11). .. _txt: diff --git a/docs/_sources/contributing.rst.txt b/docs/_sources/contributing.rst.txt index 4df9c15..621a661 100644 --- a/docs/_sources/contributing.rst.txt +++ b/docs/_sources/contributing.rst.txt @@ -18,6 +18,8 @@ Ground Rules Contribute to the software ========================== +This requires a Python version of at least 3.11 (due to `tomllib `_). + #. Work on your own fork of the main repo #. In the main repo execute: @@ -25,11 +27,11 @@ Contribute to the software #. **black src/ tests/** (this formats the code) #. **pylint src/ tests/** (this analyses the code, and might rise issues that need to be fixed before the pull request) #. **mypy --ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) - #. **pytest --cov=pyopmspe11 --cov-report term-missing tests/** (this runs locally the tests, and might rise issues that need to be fixed before the pull request; to save the files, add the flag **--basetemp=test_outputs**) + #. **pytest --cov=pyopmspe11 --cov-report term-missing tests/** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) #. **pushd docs & make html** (this generates the documentation, and might rise issues that need to be fixed before the pull request; if the build succeeds and if the contribution changes the documentation, then delete all content from the `docs `_ folder except `Makefile `_, `text `_, and `.nojekyll `_, after copy all contents from the docs/_build/html/ folder, and finally paste them in the `docs `_ folder) .. tip:: - See the `CI.yml `_ script and the `Actions `_ for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10. + See the `CI.yml `_ script and the `Actions `_ for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10 using Python3.11. #. Squash your commits into a single commit (see this `nice tutorial `_ if you are not familiar with this) #. Push your commit and make a pull request diff --git a/docs/_sources/examples.rst.txt b/docs/_sources/examples.rst.txt index 92f8262..9b68ea2 100644 --- a/docs/_sources/examples.rst.txt +++ b/docs/_sources/examples.rst.txt @@ -19,7 +19,7 @@ compare your example results to this figure to evaluate if your example ran corr .. figure:: figs/spe11b_tco2_2Dmaps.png -Using the :ref:`toml` format, the previous run is equivalent to: +Using the :ref:`toml` format, the previous run is equivalent to (this requires a Python version of at least 3.11 [due to `tomllib `_]): .. code-block:: bash diff --git a/docs/configuration_file.html b/docs/configuration_file.html index 0c372ab..165f29e 100644 --- a/docs/configuration_file.html +++ b/docs/configuration_file.html @@ -94,8 +94,9 @@

Configuration file

In the initial development of pyopmspe11, the adopted configuration file format was the one described below, i.e., via txt files. The current development of pyopmspe11 considers -toml files. To keep compatibility with previous configuration files, then support for txt files -will be kept, while new features will by added using toml configuration files.

+toml files. To keep compatibility with previous configuration files and Python versions of at least 3.8, +then support for txt files will be kept, while new features will by added using toml configuration +files (which requires at least Python3.11).

txt

The first input parameter in the configuration file is:

diff --git a/docs/contributing.html b/docs/contributing.html index ab54a49..a8358cd 100644 --- a/docs/contributing.html +++ b/docs/contributing.html @@ -102,6 +102,7 @@

Ground Rules

Contribute to the software

+

This requires a Python version of at least 3.11 (due to tomllib).

  1. Work on your own fork of the main repo

  2. In the main repo execute:

    @@ -111,12 +112,12 @@

    Contribute to the softwaredocs folder except Makefile, text, and .nojekyll, after copy all contents from the docs/_build/html/ folder, and finally paste them in the docs folder)

Tip

-

See the CI.yml script and the Actions for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10.

+

See the CI.yml script and the Actions for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10 using Python3.11.

diff --git a/docs/examples.html b/docs/examples.html index a6d875c..a247abc 100644 --- a/docs/examples.html +++ b/docs/examples.html @@ -111,7 +111,7 @@

Hello world _images/spe11b_tco2_2Dmaps.png -

Using the toml format, the previous run is equivalent to:

+

Using the toml format, the previous run is equivalent to (this requires a Python version of at least 3.11 [due to tomllib]):

pyopmspe11 -i spe11b.toml -o spe11b -m all -g all -t 5 -r 50,1,15 -w 1
diff --git a/docs/searchindex.js b/docs/searchindex.js index dba8901..26d9089 100644 --- a/docs/searchindex.js +++ b/docs/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"About pyopmspe11": [[0, null]], "After the 13.06.2024 workshop": [[5, "after-the-13-06-2024-workshop"]], "Before the 13.06.2024 workshop": [[5, "before-the-13-06-2024-workshop"]], "Benchmark": [[2, null]], "Concept": [[8, "concept"]], "Configuration file": [[3, null]], "Contribute to the software": [[4, "contribute-to-the-software"]], "Contributing": [[4, null]], "Examples": [[5, null]], "Ground Rules": [[4, "ground-rules"]], "Hello world": [[5, "hello-world"]], "Indices and tables": [[6, "indices-and-tables"]], "Installation": [[7, null]], "Introduction": [[8, null]], "Module contents": [[11, "module-pyopmspe11"], [12, "module-pyopmspe11.core"], [14, "module-pyopmspe11.utils"], [19, "module-pyopmspe11.visualization"]], "OPM Flow": [[7, "opm-flow"]], "Output folder": [[10, null]], "Overview": [[8, 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"spatial": 2, "spe11a": [2, 5], "spe11b": [2, 5], "spe11c": [2, 5], "submodul": [12, 14, 19], "subpackag": 11, "support": 4, "tabl": 6, "toml": 3, "txt": 3, "util": [14, 15, 16, 17, 18], "visual": [19, 20, 21], "welcom": 6, "well": 3, "window": 7, "workshop": 5, "world": 5, "writefil": 18}}) \ No newline at end of file diff --git a/docs/text/configuration_file.rst b/docs/text/configuration_file.rst index bf6cac0..a627889 100644 --- a/docs/text/configuration_file.rst +++ b/docs/text/configuration_file.rst @@ -4,8 +4,9 @@ Configuration file In the initial development of **pyopmspe11**, the adopted configuration file format was the one described below, i.e., via :ref:`txt` files. The current development of **pyopmspe11** considers -:ref:`toml` files. To keep compatibility with previous configuration files, then support for :ref:`txt` files -will be kept, while new features will by added using :ref:`toml` configuration files. +:ref:`toml` files. To keep compatibility with previous configuration files and Python versions of at least 3.8, +then support for :ref:`txt` files will be kept, while new features will by added using :ref:`toml` configuration +files (which requires at least Python3.11). .. _txt: diff --git a/docs/text/contributing.rst b/docs/text/contributing.rst index 4df9c15..621a661 100644 --- a/docs/text/contributing.rst +++ b/docs/text/contributing.rst @@ -18,6 +18,8 @@ Ground Rules Contribute to the software ========================== +This requires a Python version of at least 3.11 (due to `tomllib `_). + #. Work on your own fork of the main repo #. In the main repo execute: @@ -25,11 +27,11 @@ Contribute to the software #. **black src/ tests/** (this formats the code) #. **pylint src/ tests/** (this analyses the code, and might rise issues that need to be fixed before the pull request) #. **mypy --ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) - #. **pytest --cov=pyopmspe11 --cov-report term-missing tests/** (this runs locally the tests, and might rise issues that need to be fixed before the pull request; to save the files, add the flag **--basetemp=test_outputs**) + #. **pytest --cov=pyopmspe11 --cov-report term-missing tests/** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) #. **pushd docs & make html** (this generates the documentation, and might rise issues that need to be fixed before the pull request; if the build succeeds and if the contribution changes the documentation, then delete all content from the `docs `_ folder except `Makefile `_, `text `_, and `.nojekyll `_, after copy all contents from the docs/_build/html/ folder, and finally paste them in the `docs `_ folder) .. tip:: - See the `CI.yml `_ script and the `Actions `_ for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10. + See the `CI.yml `_ script and the `Actions `_ for installation of pyopmspe11, OPM Flow (binary packages), and dependencies, as well as the execution of the six previous steps in Ubuntu 24.10 using Python3.11. #. Squash your commits into a single commit (see this `nice tutorial `_ if you are not familiar with this) #. Push your commit and make a pull request diff --git a/docs/text/examples.rst b/docs/text/examples.rst index 92f8262..9b68ea2 100644 --- a/docs/text/examples.rst +++ b/docs/text/examples.rst @@ -19,7 +19,7 @@ compare your example results to this figure to evaluate if your example ran corr .. figure:: figs/spe11b_tco2_2Dmaps.png -Using the :ref:`toml` format, the previous run is equivalent to: +Using the :ref:`toml` format, the previous run is equivalent to (this requires a Python version of at least 3.11 [due to `tomllib `_]): .. code-block:: bash diff --git a/src/pyopmspe11/utils/inputvalues.py b/src/pyopmspe11/utils/inputvalues.py index ed930d6..69e8c0c 100644 --- a/src/pyopmspe11/utils/inputvalues.py +++ b/src/pyopmspe11/utils/inputvalues.py @@ -7,11 +7,15 @@ import csv import sys -import tomllib from io import StringIO from subprocess import PIPE, Popen import numpy as np +try: + import tomllib +except ImportError: + pass + def process_input(dic, in_file): """ @@ -26,6 +30,15 @@ def process_input(dic, in_file): """ if in_file.endswith(".toml"): + if sys.version_info[1] < 11: + print( + "\nInput configuration files with toml extension requieres " + + "a Python version of at least 3.11.\nYou could either use " + + "configuration files with txt extension or use a higher " + + "Python version.\nYour Python version is " + + f"3.{sys.version_info[1]}.{sys.version_info[2]}.\n" + ) + sys.exit() with open(in_file, "rb") as file: dic.update(tomllib.load(file)) setcaseproperties(dic) diff --git a/tests/test_0_input_format.py b/tests/test_0_input_format.py index 5e6c1be..e12a58e 100644 --- a/tests/test_0_input_format.py +++ b/tests/test_0_input_format.py @@ -4,6 +4,7 @@ """Test the parsing of .txt and .toml configuration files""" import os +import sys import filecmp import pathlib import subprocess @@ -13,6 +14,14 @@ def test_txt_toml(): """See configs/spe11x_data_format.y (x in [a, b, c]; y in [txt, toml])""" + if sys.version_info[1] < 11: + print( + "\nInput configuration files with toml extension requieres " + + "a Python version of at least 3.11.\nTo run this test, " + + "please update your Python version.\nYour Python version is " + + f"3.{sys.version_info[1]}.{sys.version_info[2]}." + ) + sys.exit() os.chdir(f"{dirname}/configs") for spe in ["spe11a", "spe11b", "spe11c"]: folder = []