diff --git a/DESCRIPTION b/DESCRIPTION index 396ceba9..9cd5f976 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: FeatureExtraction Type: Package Title: Generating Features for a Cohort -Version: 3.3.1 -Date: 2023-09-25 +Version: 3.3.2 +Date: 2023-11-20 Authors@R: c( person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut")), person("Marc", "Suchard", role = c("aut")), diff --git a/NEWS.md b/NEWS.md index 2d824628..22ee2b83 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +FeatureExtraction 3.3.2 +======================= + +Bug Fixes: + +- Fixes R check on GitHub Actions (#211) + FeatureExtraction 3.3.1 ======================= diff --git a/R/Table1.R b/R/Table1.R index 3be7695c..c0252a64 100644 --- a/R/Table1.R +++ b/R/Table1.R @@ -31,6 +31,8 @@ #' @export getDefaultTable1Specifications <- function() { fileName <- system.file("csv", "Table1Specs.csv", package = "FeatureExtraction") + # Workaround for issue https://github.com/tidyverse/vroom/issues/519: + readr::local_edition(1) colTypes <- list(label = readr::col_character(), analysisId = readr::col_integer(), covariateIds = readr::col_character()) specifications <- readr::read_csv(fileName, col_types = colTypes) return(specifications) diff --git a/docs/404.html b/docs/404.html index eb1590ed..9c4c58d7 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html index 30dd20cb..b5e0afe0 100644 --- a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html +++ b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Creating covariates based on other cohorts

Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/CreatingCovariatesBasedOnOtherCohorts.Rmd diff --git a/docs/articles/CreatingCovariatesUsingCohortAttributes.html b/docs/articles/CreatingCovariatesUsingCohortAttributes.html index 16337d4f..d4ec41fc 100644 --- a/docs/articles/CreatingCovariatesUsingCohortAttributes.html +++ b/docs/articles/CreatingCovariatesUsingCohortAttributes.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Creating covariates using cohort attributes

Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/CreatingCovariatesUsingCohortAttributes.Rmd diff --git a/docs/articles/CreatingCustomCovariateBuilders.html b/docs/articles/CreatingCustomCovariateBuilders.html index ec200b37..c899d412 100644 --- a/docs/articles/CreatingCustomCovariateBuilders.html +++ b/docs/articles/CreatingCustomCovariateBuilders.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Creating custom covariate builders

Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/CreatingCustomCovariateBuilders.Rmd diff --git a/docs/articles/CreatingCustomCovariateBuildersKorean.html b/docs/articles/CreatingCustomCovariateBuildersKorean.html index fab985e7..e5922654 100644 --- a/docs/articles/CreatingCustomCovariateBuildersKorean.html +++ b/docs/articles/CreatingCustomCovariateBuildersKorean.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Creating custom covariate builders (Korean)

Jeon Ga Bin & Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/CreatingCustomCovariateBuildersKorean.Rmd diff --git a/docs/articles/UsingFeatureExtraction.html b/docs/articles/UsingFeatureExtraction.html index a8f62028..89982f61 100644 --- a/docs/articles/UsingFeatureExtraction.html +++ b/docs/articles/UsingFeatureExtraction.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Using FeatureExtraction

Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/UsingFeatureExtraction.Rmd diff --git a/docs/articles/UsingFeatureExtractionKorean.html b/docs/articles/UsingFeatureExtractionKorean.html index 4a031c85..e059f91c 100644 --- a/docs/articles/UsingFeatureExtractionKorean.html +++ b/docs/articles/UsingFeatureExtractionKorean.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -100,7 +100,7 @@

Using FeatureExtraction (Korean)

Jeon Ga Bin & Martijn J. Schuemie

-

2023-09-25

+

2023-11-20

Source: vignettes/UsingFeatureExtractionKorean.Rmd diff --git a/docs/articles/index.html b/docs/articles/index.html index 556e1d6e..65006625 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/authors.html b/docs/authors.html index 0263c61a..c74d497a 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -111,13 +111,13 @@

Citation

Schuemie M, Suchard M, Ryan P, Reps J, Sena A, Inberg G (2023). FeatureExtraction: Generating Features for a Cohort. -R package version 3.3.1, https://github.com/OHDSI/FeatureExtraction. +R package version 3.3.2, https://github.com/OHDSI/FeatureExtraction. 

@Manual{,
   title = {FeatureExtraction: Generating Features for a Cohort},
   author = {Martijn Schuemie and Marc Suchard and Patrick Ryan and Jenna Reps and Anthony Sena and Ger Inberg},
   year = {2023},
-  note = {R package version 3.3.1},
+  note = {R package version 3.3.2},
   url = {https://github.com/OHDSI/FeatureExtraction},
 }
diff --git a/docs/index.html b/docs/index.html index b9174cf2..32c19553 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/news/index.html b/docs/news/index.html index b4e71059..91de4744 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -75,6 +75,11 @@

Changelog

Source: NEWS.md +
+

FeatureExtraction 3.3.2

+

Bug Fixes:

+

FeatureExtraction 3.3.1

Bug Fixes:

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index be0abdca..93a986c3 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -8,5 +8,5 @@ articles: CreatingCustomCovariateBuildersKorean: CreatingCustomCovariateBuildersKorean.html UsingFeatureExtraction: UsingFeatureExtraction.html UsingFeatureExtractionKorean: UsingFeatureExtractionKorean.html -last_built: 2023-09-25T19:05Z +last_built: 2023-11-20T14:45Z diff --git a/docs/pull_request_template.html b/docs/pull_request_template.html index b097bdb4..a5f083e2 100644 --- a/docs/pull_request_template.html +++ b/docs/pull_request_template.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2
diff --git a/docs/reference/CovariateData-class.html b/docs/reference/CovariateData-class.html index b47c5251..a52609d7 100644 --- a/docs/reference/CovariateData-class.html +++ b/docs/reference/CovariateData-class.html @@ -25,7 +25,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/FeatureExtraction-package.html b/docs/reference/FeatureExtraction-package.html index 5f48066c..0380737f 100644 --- a/docs/reference/FeatureExtraction-package.html +++ b/docs/reference/FeatureExtraction-package.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/aggregateCovariates.html b/docs/reference/aggregateCovariates.html index 7ab38461..d7465592 100644 --- a/docs/reference/aggregateCovariates.html +++ b/docs/reference/aggregateCovariates.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/computeStandardizedDifference.html b/docs/reference/computeStandardizedDifference.html index 5fc5f9ac..c21cc22d 100644 --- a/docs/reference/computeStandardizedDifference.html +++ b/docs/reference/computeStandardizedDifference.html @@ -18,7 +18,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/convertPrespecSettingsToDetailedSettings.html b/docs/reference/convertPrespecSettingsToDetailedSettings.html index 2fb368ef..c1d2f26b 100644 --- a/docs/reference/convertPrespecSettingsToDetailedSettings.html +++ b/docs/reference/convertPrespecSettingsToDetailedSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createAnalysisDetails.html b/docs/reference/createAnalysisDetails.html index 906ae53a..eb38d78c 100644 --- a/docs/reference/createAnalysisDetails.html +++ b/docs/reference/createAnalysisDetails.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createCohortAttrCovariateSettings.html b/docs/reference/createCohortAttrCovariateSettings.html index a700e3ac..125a5d2a 100644 --- a/docs/reference/createCohortAttrCovariateSettings.html +++ b/docs/reference/createCohortAttrCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createCohortBasedCovariateSettings.html b/docs/reference/createCohortBasedCovariateSettings.html index be0d9177..f7b8d32b 100644 --- a/docs/reference/createCohortBasedCovariateSettings.html +++ b/docs/reference/createCohortBasedCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createCohortBasedTemporalCovariateSettings.html b/docs/reference/createCohortBasedTemporalCovariateSettings.html index cc778752..4de84969 100644 --- a/docs/reference/createCohortBasedTemporalCovariateSettings.html +++ b/docs/reference/createCohortBasedTemporalCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createCovariateSettings.html b/docs/reference/createCovariateSettings.html index b468b4dd..f41e6699 100644 --- a/docs/reference/createCovariateSettings.html +++ b/docs/reference/createCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createDefaultCovariateSettings.html b/docs/reference/createDefaultCovariateSettings.html index e9588dbc..f0346d3c 100644 --- a/docs/reference/createDefaultCovariateSettings.html +++ b/docs/reference/createDefaultCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createDefaultTemporalCovariateSettings.html b/docs/reference/createDefaultTemporalCovariateSettings.html index 70435fdb..2ce35cfd 100644 --- a/docs/reference/createDefaultTemporalCovariateSettings.html +++ b/docs/reference/createDefaultTemporalCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createDetailedCovariateSettings.html b/docs/reference/createDetailedCovariateSettings.html index 831c8833..84e50564 100644 --- a/docs/reference/createDetailedCovariateSettings.html +++ b/docs/reference/createDetailedCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createDetailedTemporalCovariateSettings.html b/docs/reference/createDetailedTemporalCovariateSettings.html index 4ef1ddf0..c995a25f 100644 --- a/docs/reference/createDetailedTemporalCovariateSettings.html +++ b/docs/reference/createDetailedTemporalCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createEmptyCovariateData.html b/docs/reference/createEmptyCovariateData.html index 296dc06c..e5613826 100644 --- a/docs/reference/createEmptyCovariateData.html +++ b/docs/reference/createEmptyCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createTable1.html b/docs/reference/createTable1.html index ea9da200..69cea9ab 100644 --- a/docs/reference/createTable1.html +++ b/docs/reference/createTable1.html @@ -18,7 +18,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createTable1CovariateSettings.html b/docs/reference/createTable1CovariateSettings.html index 237ec586..11fa56cf 100644 --- a/docs/reference/createTable1CovariateSettings.html +++ b/docs/reference/createTable1CovariateSettings.html @@ -19,7 +19,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createTemporalCovariateSettings.html b/docs/reference/createTemporalCovariateSettings.html index 15ec2f6f..f6eed2bd 100644 --- a/docs/reference/createTemporalCovariateSettings.html +++ b/docs/reference/createTemporalCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/createTemporalSequenceCovariateSettings.html b/docs/reference/createTemporalSequenceCovariateSettings.html index c15fc6b5..60f7ed29 100644 --- a/docs/reference/createTemporalSequenceCovariateSettings.html +++ b/docs/reference/createTemporalSequenceCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/dot-createLooCovariateSettings.html b/docs/reference/dot-createLooCovariateSettings.html index 923ff474..dfd08e02 100644 --- a/docs/reference/dot-createLooCovariateSettings.html +++ b/docs/reference/dot-createLooCovariateSettings.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/dot-getDbLooCovariateData.html b/docs/reference/dot-getDbLooCovariateData.html index 0f9b514e..c6bdcec8 100644 --- a/docs/reference/dot-getDbLooCovariateData.html +++ b/docs/reference/dot-getDbLooCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/filterByCohortDefinitionId.html b/docs/reference/filterByCohortDefinitionId.html index e322cc40..40a5e30c 100644 --- a/docs/reference/filterByCohortDefinitionId.html +++ b/docs/reference/filterByCohortDefinitionId.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/filterByRowId.html b/docs/reference/filterByRowId.html index b57c41f2..37c911b5 100644 --- a/docs/reference/filterByRowId.html +++ b/docs/reference/filterByRowId.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/getDbCohortAttrCovariatesData.html b/docs/reference/getDbCohortAttrCovariatesData.html index 988bc2dc..d56b7352 100644 --- a/docs/reference/getDbCohortAttrCovariatesData.html +++ b/docs/reference/getDbCohortAttrCovariatesData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/getDbCohortBasedCovariatesData.html b/docs/reference/getDbCohortBasedCovariatesData.html index a97a39d0..c4f29943 100644 --- a/docs/reference/getDbCohortBasedCovariatesData.html +++ b/docs/reference/getDbCohortBasedCovariatesData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/getDbCovariateData.html b/docs/reference/getDbCovariateData.html index 312e8ce5..5026acbe 100644 --- a/docs/reference/getDbCovariateData.html +++ b/docs/reference/getDbCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/getDbDefaultCovariateData.html b/docs/reference/getDbDefaultCovariateData.html index 131b7445..e9c1d730 100644 --- a/docs/reference/getDbDefaultCovariateData.html +++ b/docs/reference/getDbDefaultCovariateData.html @@ -19,7 +19,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/getDefaultTable1Specifications.html b/docs/reference/getDefaultTable1Specifications.html index a25c1fc4..da6b234a 100644 --- a/docs/reference/getDefaultTable1Specifications.html +++ b/docs/reference/getDefaultTable1Specifications.html @@ -18,7 +18,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index 4c47d40d..410423c4 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 @@ -79,6 +79,10 @@

All functions

+

show(<CovariateData>) summary(<CovariateData>)

+ +

Covariate Data

+

aggregateCovariates()

Aggregate covariate data

@@ -90,10 +94,6 @@

All functions convertPrespecSettingsToDetailedSettings()

Convert prespecified covariate settings into detailed covariate settings

- -

show(<CovariateData>) summary(<CovariateData>)

- -

Covariate Data

createAnalysisDetails()

diff --git a/docs/reference/isAggregatedCovariateData.html b/docs/reference/isAggregatedCovariateData.html index c65d216a..c1879ae5 100644 --- a/docs/reference/isAggregatedCovariateData.html +++ b/docs/reference/isAggregatedCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/isCovariateData.html b/docs/reference/isCovariateData.html index 698dc0ae..64634ea7 100644 --- a/docs/reference/isCovariateData.html +++ b/docs/reference/isCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/isTemporalCovariateData.html b/docs/reference/isTemporalCovariateData.html index 3d74a2ff..9f8570c1 100644 --- a/docs/reference/isTemporalCovariateData.html +++ b/docs/reference/isTemporalCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/loadCovariateData.html b/docs/reference/loadCovariateData.html index ce40577a..0bb9f624 100644 --- a/docs/reference/loadCovariateData.html +++ b/docs/reference/loadCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/saveCovariateData.html b/docs/reference/saveCovariateData.html index 2c8dee45..02cb2d6d 100644 --- a/docs/reference/saveCovariateData.html +++ b/docs/reference/saveCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/reference/tidyCovariateData.html b/docs/reference/tidyCovariateData.html index 385ccbf2..0ac39f23 100644 --- a/docs/reference/tidyCovariateData.html +++ b/docs/reference/tidyCovariateData.html @@ -17,7 +17,7 @@ FeatureExtraction - 3.3.1 + 3.3.2 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 1706a01a..26824ff9 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -15,15 +15,15 @@ /articles/CreatingCustomCovariateBuildersKorean.html - - /articles/index.html - /articles/UsingFeatureExtraction.html /articles/UsingFeatureExtractionKorean.html + + /articles/index.html + /authors.html @@ -36,6 +36,15 @@ /pull_request_template.html + + /reference/CovariateData-class.html + + + /reference/FeatureExtraction-package.html + + + /reference/FeatureExtraction.html + /reference/aggregateCovariates.html @@ -51,9 +60,6 @@ /reference/convertPrespecSettingsToDetailedSettings.html - - /reference/CovariateData-class.html - /reference/createAnalysisDetails.html @@ -105,12 +111,6 @@ /reference/dot-getDbLooCovariateData.html - - /reference/FeatureExtraction-package.html - - - /reference/FeatureExtraction.html - /reference/filterByCohortDefinitionId.html diff --git a/extras/FeatureExtraction.pdf b/extras/FeatureExtraction.pdf index bfc2c69d..fe5783f2 100644 Binary files a/extras/FeatureExtraction.pdf and b/extras/FeatureExtraction.pdf differ diff --git a/extras/PackageMaintenance.R b/extras/PackageMaintenance.R index 64be36d3..20569cfe 100644 --- a/extras/PackageMaintenance.R +++ b/extras/PackageMaintenance.R @@ -33,7 +33,7 @@ devtools::spell_check() # Create manual and vignettes unlink("extras/FeatureExtraction.pdf") -shell("R CMD Rd2pdf ./ --output=extras/FeatureExtraction.pdf") +system("R CMD Rd2pdf ./ --output=extras/FeatureExtraction.pdf") dir.create("inst/doc") rmarkdown::render("vignettes/CreatingCustomCovariateBuilders.Rmd", diff --git a/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf b/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf index acaf75a0..2112411a 100644 Binary files a/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf and b/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf differ diff --git a/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf b/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf index d0b4f3f8..03c7ae91 100644 Binary files a/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf and b/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf differ diff --git a/inst/doc/CreatingCustomCovariateBuilders.pdf b/inst/doc/CreatingCustomCovariateBuilders.pdf index 02a3cdf0..ce5ca33c 100644 Binary files a/inst/doc/CreatingCustomCovariateBuilders.pdf and b/inst/doc/CreatingCustomCovariateBuilders.pdf differ diff --git a/inst/doc/CreatingCustomCovariateBuildersKorean.pdf b/inst/doc/CreatingCustomCovariateBuildersKorean.pdf index 882965e8..a5a8eb19 100644 Binary files a/inst/doc/CreatingCustomCovariateBuildersKorean.pdf and b/inst/doc/CreatingCustomCovariateBuildersKorean.pdf differ diff --git a/inst/doc/UsingFeatureExtraction.pdf b/inst/doc/UsingFeatureExtraction.pdf index eb9f9054..5140aa8d 100644 Binary files a/inst/doc/UsingFeatureExtraction.pdf and b/inst/doc/UsingFeatureExtraction.pdf differ diff --git a/inst/doc/UsingFeatureExtractionKorean.pdf b/inst/doc/UsingFeatureExtractionKorean.pdf index 82be557e..f0a741c8 100644 Binary files a/inst/doc/UsingFeatureExtractionKorean.pdf and b/inst/doc/UsingFeatureExtractionKorean.pdf differ diff --git a/tests/testthat/test-tidyCovariates.R b/tests/testthat/test-tidyCovariates.R index f437ef62..b0917fcc 100644 --- a/tests/testthat/test-tidyCovariates.R +++ b/tests/testthat/test-tidyCovariates.R @@ -29,7 +29,7 @@ test_that("Test empty covariateData", { temporal = FALSE ) result <- tidyCovariateData(covariateData = cvData) - expect_equal(length(result$covariates$covariateId), length(cvData$covariates$covariateId)) + expect_equal(length(pull(result$covariates, covariateId)), length(pull(cvData$covariates, covariateId))) }) test_that("tidyCovariates works", { @@ -91,5 +91,5 @@ test_that("tidyCovariateData on Temporal Data", { covariateSettings = covariateSettings ) tidy <- tidyCovariateData(covariateData) - expect_equal(length(tidy$analysisRef$analysisId), length(covariateData$analysisRef$analysisId)) + expect_equal(length(pull(tidy$analysisRef, analysisId)), length(pull(covariateData$analysisRef, analysisId))) })