diff --git a/_posts/2020-03-21-tool-update.md b/_posts/2020-03-21-tool-update.md index 2165690a5..76bd032e0 100644 --- a/_posts/2020-03-21-tool-update.md +++ b/_posts/2020-03-21-tool-update.md @@ -19,7 +19,59 @@ On 2020-03-21, the tools on UseGalaxy.eu were updated by our automated tool upda - lofreq_indelqual was updated to [f4473557ffc7](https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_indelqual/f4473557ffc7) - lofreq_viterbi was updated to [cdaab621d454](https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_viterbi/cdaab621d454) -## RAD-seq +## Metagenomic Analysis -- stacks2_cstacks was updated to [c541e62d6c56](https://toolshed.g2.bx.psu.edu/view/iuc/stacks2_cstacks/c541e62d6c56) +- dada2_assigntaxonomyaddspecies was updated to [1c9715cef808](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_assigntaxonomyaddspecies/1c9715cef808) +- dada2_dada was updated to [2222f08c8316](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_dada/2222f08c8316) +- dada2_filterandtrim was updated to [23fc35093b11](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_filterandtrim/23fc35093b11) +- dada2_learnerrors was updated to [c48d42d65d2b](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_learnerrors/c48d42d65d2b) +- dada2_makesequencetable was updated to [99c6929236fa](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_makesequencetable/99c6929236fa) +- dada2_mergepairs was updated to [69900ffd3b8e](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_mergepairs/69900ffd3b8e) +- dada2_plotcomplexity was updated to [1728e5ee871a](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotcomplexity/1728e5ee871a) +- dada2_plotqualityprofile was updated to [2a90d2fd3336](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_plotqualityprofile/2a90d2fd3336) +- dada2_removebimeradenovo was updated to [5b752525bd6f](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_removebimeradenovo/5b752525bd6f) +- dada2_seqcounts was updated to [f74c56549143](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_seqcounts/f74c56549143) + +## hca_sc_utils_viz + +- dropletutils_empty_drops was updated to [00b41600e1c1](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/dropletutils_empty_drops/00b41600e1c1) +- dropletutils_read_10x was updated to [48c1e7b39675](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/dropletutils_read_10x/48c1e7b39675) + +## Proteomics + +- maldi_quant_peak_detection was updated to [e66f552a3c47](https://toolshed.g2.bx.psu.edu/view/galaxyp/maldi_quant_peak_detection/e66f552a3c47) + +## Phylogenetics + +- hyphy_absrel was updated to [c5533a61ea60](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_absrel/c5533a61ea60) +- hyphy_bgm was updated to [fb142ad9b580](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_bgm/fb142ad9b580) +- hyphy_busted was updated to [4ff928db5592](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_busted/4ff928db5592) +- hyphy_fade was updated to [62971c58f0dc](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fade/62971c58f0dc) +- hyphy_fel was updated to [6400b683aced](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fel/6400b683aced) +- hyphy_fubar was updated to [da68d7067bf8](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_fubar/da68d7067bf8) +- hyphy_gard was updated to [c96eee4ebe63](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_gard/c96eee4ebe63) +- hyphy_meme was updated to [74b590fdc6a0](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_meme/74b590fdc6a0) +- hyphy_relax was updated to [c62ddfa33ac5](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_relax/c62ddfa33ac5) +- hyphy_slac was updated to [36a50b938d70](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_slac/36a50b938d70) +- hyphy_sm19 was updated to [1cd3060a8504](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_sm19/1cd3060a8504) + +## Get Data + +- sra_tools was updated to [aad3885b3216](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/aad3885b3216) + +## RNA Analysis + +- chira_collapse was updated to [2a57d2ef04c6](https://toolshed.g2.bx.psu.edu/view/iuc/chira_collapse/2a57d2ef04c6) +- chira_extract was updated to [dea6bc47a47e](https://toolshed.g2.bx.psu.edu/view/iuc/chira_extract/dea6bc47a47e) +- chira_map was updated to [39bb70c2764e](https://toolshed.g2.bx.psu.edu/view/iuc/chira_map/39bb70c2764e) +- chira_merge was updated to [0170de5072d4](https://toolshed.g2.bx.psu.edu/view/iuc/chira_merge/0170de5072d4) +- chira_quantify was updated to [903f7a4cfbf0](https://toolshed.g2.bx.psu.edu/view/iuc/chira_quantify/903f7a4cfbf0) + +## ChemicalToolBox + +- fpocket was updated to [909c8763f127](https://toolshed.g2.bx.psu.edu/view/bgruening/fpocket/909c8763f127) +- rdock_rbcavity was updated to [5f73eb32ddbf](https://toolshed.g2.bx.psu.edu/view/bgruening/rdock_rbcavity/5f73eb32ddbf) +- rdock_rbdock was updated to [1709d2c3dc20](https://toolshed.g2.bx.psu.edu/view/bgruening/rdock_rbdock/1709d2c3dc20) +- sucos_clustering was updated to [58d18838e244](https://toolshed.g2.bx.psu.edu/view/bgruening/sucos_clustering/58d18838e244) +- sucos_docking_scoring was updated to [8161c08627bf](https://toolshed.g2.bx.psu.edu/view/bgruening/sucos_docking_scoring/8161c08627bf)