Cortical Rodent Thickness Analysis
Find the tool on
NITRC : https://www.nitrc.org/projects/rodentthickness/
Github: https://github.com/NIRALUser/RodentThickness.git
Contact : [email protected]
tool to measure cortical thickness of rodent brain
These softwares need to be installed before executing the tool :
ImageMath
measureThicknessFilter
GenParaMeshCLP
ParaToSPHARMMeshCLP
ShapeWorksRun
ShapeWorksGroom
SegPostProcess
BinaryToDistanceMap
MeshPointsIntensitysampling
The programs use:
Python2.6 or Python 2.7 with vtk installed
Rscript