From 337a6dc5a0ec17d9b4ebfccbdb0b54e4da0f847f Mon Sep 17 00:00:00 2001 From: saschulz <105273410+saschulz@users.noreply.github.com> Date: Tue, 20 Feb 2024 10:00:18 +0100 Subject: [PATCH 1/2] Update 02-external-sops.md --- .../02-external-sops.md | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md b/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md index d3fecea0..1e25c0db 100644 --- a/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md +++ b/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md @@ -5,3 +5,18 @@ layout: default docs_css: markdown hide: true --- +## External SOPs + +| Title | Organisation | Category | Link | +| ------ | ------ | ------ | ------ | ------ | +| Standard operating procedure for fecal samples identification | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 01](https://human-microbiome.org/index.php?id=Sop&num=001) | +| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 02](https://human-microbiome.org/index.php?id=Sop&num=002)) | +| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 to 24 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 03](https://human-microbiome.org/index.php?id=Sop&num=003)) | +| Standard operating procedure for fecal samples frozen preserved self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 04](https://human-microbiome.org/index.php?id=Sop&num=004)) | +| Standard operating procedure for fecal samples preserved in stabilizing solution self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 05](https://human-microbiome.org/index.php?id=Sop&num=005)) | +| Standard operating procedure for fecal samples DNA Extraction, protocol Q | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 06](https://human-microbiome.org/index.php?id=Sop&num=006)) | +| Standard operating procedure for fecal samples DNA Extraction, protocol H | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 07](https://human-microbiome.org/index.php?id=Sop&num=007)) | +| DNA Extraction Protocol| Earth Microbiome | DNA Extraction | [DNA Extraction Protocol](https://www.protocols.io/view/earth-microbiome-project-emp-high-throughput-htp-d-8epv5qqjv1bz/v1) | +|16S Illumina Amplicon Protocol | Earth Microbiome | DNA Sequencing | [16S Illumina Amplicon Protocol](https://www.protocols.io/view/emp-16s-illumina-amplicon-protocol-kqdg3dzzl25z/v2) | +|18S Illumina Amplicon Protocol| Earth Microbiome | DNA Sequencing | [16S Illumina Amplicon Protocol](https://www.protocols.io/view/emp-18s-illumina-amplicon-protocol-ewov1b6pgr24/v2) | +|ITS Illumina Amplicon Protocol| Earth Microbiome | DNA Sequencing | [ITS Illumina Amplicon Protocol](https://www.protocols.io/view/emp-its-illumina-amplicon-protocol-14egnqypg5dy/v1) | From 972313f77d41cff4de561e8b7324efdda40c57c5 Mon Sep 17 00:00:00 2001 From: KK-NFDI <115994792+KK-NFDI@users.noreply.github.com> Date: Tue, 20 Feb 2024 12:57:39 +0100 Subject: [PATCH 2/2] Update 02-external-sops.md: clean up table Cleaning up the table. --- .../02-external-sops.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md b/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md index 1e25c0db..7f40850e 100644 --- a/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md +++ b/docs/_Experimental-Procedure-Standards-SOPs/02-external-sops.md @@ -8,14 +8,14 @@ hide: true ## External SOPs | Title | Organisation | Category | Link | -| ------ | ------ | ------ | ------ | ------ | +| ------ | ------ | ------ | ------ | | Standard operating procedure for fecal samples identification | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 01](https://human-microbiome.org/index.php?id=Sop&num=001) | -| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 02](https://human-microbiome.org/index.php?id=Sop&num=002)) | -| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 to 24 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 03](https://human-microbiome.org/index.php?id=Sop&num=003)) | -| Standard operating procedure for fecal samples frozen preserved self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 04](https://human-microbiome.org/index.php?id=Sop&num=004)) | -| Standard operating procedure for fecal samples preserved in stabilizing solution self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 05](https://human-microbiome.org/index.php?id=Sop&num=005)) | -| Standard operating procedure for fecal samples DNA Extraction, protocol Q | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 06](https://human-microbiome.org/index.php?id=Sop&num=006)) | -| Standard operating procedure for fecal samples DNA Extraction, protocol H | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 07](https://human-microbiome.org/index.php?id=Sop&num=007)) | +| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 02](https://human-microbiome.org/index.php?id=Sop&num=002) | +| Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 to 24 hours | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 03](https://human-microbiome.org/index.php?id=Sop&num=003) | +| Standard operating procedure for fecal samples frozen preserved self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 04](https://human-microbiome.org/index.php?id=Sop&num=004) | +| Standard operating procedure for fecal samples preserved in stabilizing solution self-Collection, laboratory analysis handled within 24 hours to 7 days | International Human Microbiome Standards (IHMS) | Sample Collection | [SOP 05](https://human-microbiome.org/index.php?id=Sop&num=005) | +| Standard operating procedure for fecal samples DNA Extraction, protocol Q | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 06](https://human-microbiome.org/index.php?id=Sop&num=006) | +| Standard operating procedure for fecal samples DNA Extraction, protocol H | International Human Microbiome Standards (IHMS) | DNA Extraction | [SOP 07](https://human-microbiome.org/index.php?id=Sop&num=007) | | DNA Extraction Protocol| Earth Microbiome | DNA Extraction | [DNA Extraction Protocol](https://www.protocols.io/view/earth-microbiome-project-emp-high-throughput-htp-d-8epv5qqjv1bz/v1) | |16S Illumina Amplicon Protocol | Earth Microbiome | DNA Sequencing | [16S Illumina Amplicon Protocol](https://www.protocols.io/view/emp-16s-illumina-amplicon-protocol-kqdg3dzzl25z/v2) | |18S Illumina Amplicon Protocol| Earth Microbiome | DNA Sequencing | [16S Illumina Amplicon Protocol](https://www.protocols.io/view/emp-18s-illumina-amplicon-protocol-ewov1b6pgr24/v2) |