ci_tests_and_publish.yml

name: Testing notebooks and publish HTML

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main
  schedule:
    - cron: '0 5 * * 1'
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  tests:
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    strategy:
      # Don't cancel jobs if one is failing
      fail-fast: false
      matrix:
        include:

          - name: Linux with the oldest version of dependencies
            os: ubuntu-latest
            python: '3.8'
            toxenv: py38-test-oldestdeps

          - name: OSX
            os: macos-latest
            python: '3.11'
            toxenv: py311-test

          - name: Windows
            os: windows-latest
            python: '3.9'
            toxenv: py39-test

    steps:
      - uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python }}

      - name: Install dependencies
        run: python -m pip install --upgrade tox

      - name: Execute notebooks as testing
        run: tox ${{ matrix.toxargs }} -e ${{ matrix.toxenv }} -- ${{ matrix.toxposargs }}

  conda:
    name: test conda env file
    runs-on:  ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      # Don't cancel jobs if one is failing
      fail-fast: false
      matrix:
        os: ["windows-latest", "ubuntu-latest", "macos-latest"]

    steps:
        - uses: actions/checkout@v4
        - uses: conda-incubator/setup-miniconda@v3
          with:
            environment-file: environment.yml
            activate-environment: navo-env
            auto-activate-base: false
        - run: pip install -r doc-requirements.txt
        - run: |
            python check_env.py
            bash -c 'find content -name "*.md" | xargs jupytext --to notebook '
            pytest --nbval content/

  publish:
    if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
    name: Publish HTML
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.10'

      - name: Install dependencies
        run: python -m pip install --upgrade tox

      - name: Execute notebooks as testing
        run: tox -e py310-buildhtml

      - name: Publish
        uses: peaceiris/actions-gh-pages@v3.6.1
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          publish_dir: ./_build/html/
          commit_message: ${{ github.event.head_commit.message }}