From 74e9d493fd40ab4e73fc6eabf7db2226ac590947 Mon Sep 17 00:00:00 2001 From: Ryan Goetz Date: Thu, 23 May 2024 12:25:03 -1000 Subject: [PATCH 1/2] Added options for sequencing development --- docker-compose.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docker-compose.yml b/docker-compose.yml index 723a45f9bb..a234d87666 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -74,7 +74,8 @@ services: aerie_sequencing: build: context: ./sequencing-server - dockerfile: Dockerfile.dev + dockerfile: Dockerfile + #dockerfile: Dockerfile.dev #-- Uncomment for development container_name: aerie_sequencing depends_on: ["postgres"] environment: @@ -93,6 +94,7 @@ services: TRANSPILER_ENABLED: "true" image: aerie_sequencing ports: ["27184:27184"] + #ports: [ "27184:27184",'9229:9229'] #-- Uncomment for development restart: always volumes: - ./sequencing-server:/app:cached From d891afc0ed3f87aaf933b53bf9107889120837e0 Mon Sep 17 00:00:00 2001 From: Ryan Goetz Date: Thu, 23 May 2024 12:25:26 -1000 Subject: [PATCH 2/2] Added knobs for sequencing server deployment --- deployment/docker-compose.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/deployment/docker-compose.yml b/deployment/docker-compose.yml index 3178b43fdd..bfeca65141 100755 --- a/deployment/docker-compose.yml +++ b/deployment/docker-compose.yml @@ -124,6 +124,9 @@ services: SEQUENCING_DB_USER: "${SEQUENCING_USERNAME}" SEQUENCING_DB_PASSWORD: "${SEQUENCING_PASSWORD}" SEQUENCING_LOCAL_STORE: /usr/src/app/sequencing_file_store + SEQUENCING_WORKER_NUM: 8 + SEQUENCING_MAX_WORKER_HEAP_MB: 1000 + TRANSPILER_ENABLED: "true" image: "${REPOSITORY_DOCKER_URL}/aerie-sequencing:${DOCKER_TAG}" ports: ["27184:27184"] restart: always