From a2bb1859b7f1cafee220ce6bf0bf0f8b1c57cba2 Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 14:50:36 +0100 Subject: [PATCH 1/6] Update postgresql version --- docker/docker-compose.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/docker-compose.yml b/docker/docker-compose.yml index 40f46b63..cc8e8ab8 100644 --- a/docker/docker-compose.yml +++ b/docker/docker-compose.yml @@ -46,7 +46,7 @@ services: barberini_analytics_db: container_name: barberini_analytics_db - image: postgres:12.3 + image: postgres:12.7 restart: always shm_size: 1g ports: From be1c39d534367e1682e6f41a0de1ff52b1bd0a4f Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 14:56:19 +0100 Subject: [PATCH 2/6] Document update process for docker and postgresql --- MAINTENANCE.md | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/MAINTENANCE.md b/MAINTENANCE.md index 45b74b82..a4286fec 100644 --- a/MAINTENANCE.md +++ b/MAINTENANCE.md @@ -37,11 +37,35 @@ Thus, updates should be carried out on a regular schedule. 4. Create a merge request with your changes and make sure the CI passes. 5. Once it passes, merge the branch. +#### Update docker installation + +1. Check your current version: + + ```sh + docker -v + ``` + +2. Visit to learn about open CVEs. + +3. Identify upgradable packages: + + ```sh + apt list --installed | grep docker + ``` + +4. Upgrade relevant packages: + + ```sh + apt upgrade + ``` + #### Update docker images Each used docker image is specified either in `docker/docker-compose.yml` or in the linked Dockerfile. For more information about the docker containers, please refer to the [documentation](DOCUMENTATION.md#docker-containers). +0. First of all, search for breaking changes of an update, e.g., [here](https://www.postgresql.org/docs/release/) for Postgresql. + You can find all existing CVEs for Postgresql [here](https://www.postgresql.org/support/security/). 1. To update a docker image, edit the `image` key in the yaml file respectively the `FROM` command in the Dockerfile. Be careful to watch for any breaking changes in the updates. 2. Restart the container by running `make shutdown- startup-`. From 593709f8f6543a044297254eded8ddaf41e54861 Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 15:03:15 +0100 Subject: [PATCH 3/6] Upgrade requirements.txt (2021-11-24) --- docker/requirements.txt | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/docker/requirements.txt b/docker/requirements.txt index 152c6eeb..936d311f 100644 --- a/docker/requirements.txt +++ b/docker/requirements.txt @@ -8,21 +8,21 @@ setuptools>=40.3.0 # for google-auth # Framework luigi==3.0.3 -psycopg2==2.9.1 +psycopg2==2.9.2 # Testing tools -bandit==1.7.0 +bandit==1.7.1 checksumdir==1.2.0 -coverage==5.5 -django==3.2.6 -flake8==3.9.2 +coverage==6.1.2 +django==3.2.9 +flake8==4.0.1 flake8-docstrings==1.6.0 freezegun==1.1.0 pep8-naming==0.12.1 validators==0.18.2 # Data sources -google-api-python-client==2.17.0 +google-api-python-client==2.31.0 instaloader==4.8.1 git+https://github.com/twintproject/twint.git#egg=twint @@ -30,35 +30,35 @@ git+https://github.com/twintproject/twint.git#egg=twint scikit-learn==0.24.2 pgeocode==0.3.0 ## ABSA -gensim==4.0.1 -spacy==3.1.1 +gensim==4.1.2 +spacy==3.2.0 ## topic_modeling git+https://github.com/rwalk/gsdmm.git#egg=gsdmm langdetect==1.0.9 -nltk==3.6.2 +nltk==3.6.5 sklearn==0.0 stop-words==2018.7.23 # Helpers backports-datetime-fromisoformat==1.0.0 bs4==0.0.1 -dateparser==1.0.0 +dateparser==1.1.0 js2py==0.71 jsonpickle==2.0.0 jstyleson==0.0.2 lockfile==0.12.2 -lxml==4.6.3 +lxml==4.6.4 mmh3==3.0.0 nptime==1.1 numpy==1.19.4 oauth2client==4.1.3 pandas==1.1.5 -PyYAML==5.4.1 +PyYAML==6.0 requests==2.26.0 -tqdm==4.62.1 -tzdata==2021.1 # required for dateparser +tqdm==4.62.3 +tzdata==2021.5 # required for dateparser xlrd==1.2.0 # Do not update, v2.0.1 does not support XLSX files: # https://stackoverflow.com/questions/65254535/ # xlrd-biffh-xlrderror-excel-xlsx-file-not-supported xmltodict==0.12.0 -varname==0.8.0 +varname==0.8.1 From 877e56721a1450c012a2d6114c918997e8111a42 Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 16:55:45 +0100 Subject: [PATCH 4/6] Improve docs on `make upgrade-requirements` --- MAINTENANCE.md | 7 ++++--- docker/requirements.txt | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/MAINTENANCE.md b/MAINTENANCE.md index a4286fec..1cd8d7b2 100644 --- a/MAINTENANCE.md +++ b/MAINTENANCE.md @@ -29,13 +29,14 @@ Thus, updates should be carried out on a regular schedule. 1. Check out a new branch. 2. Connect to the docker (`make connect`), and run `make upgrade-requirements`. -3. If `pip check` fails, you need to manually add the required dependencies to `docker/requirements.txt`. +3. Revise the changes in `requirements.txt`. +4. If `pip check` fails, you need to manually add the required dependencies to `docker/requirements.txt`. This is necessary because of . **Remark:** You may need to "touch" the Dockerfile manually by editing its first line to make sure that the previous docker cache is not reused, which would lead to the changes in `requirements.txt` are not checked at all! -4. Create a merge request with your changes and make sure the CI passes. -5. Once it passes, merge the branch. +5. Create a merge request with your changes and make sure the CI passes. +6. Once it passes, merge the branch. #### Update docker installation diff --git a/docker/requirements.txt b/docker/requirements.txt index 936d311f..7a9e6b6c 100644 --- a/docker/requirements.txt +++ b/docker/requirements.txt @@ -57,7 +57,7 @@ PyYAML==6.0 requests==2.26.0 tqdm==4.62.3 tzdata==2021.5 # required for dateparser -xlrd==1.2.0 # Do not update, v2.0.1 does not support XLSX files: +xlrd==1.2.0,<2.0.0 # v2.x does not support XLSX files: # https://stackoverflow.com/questions/65254535/ # xlrd-biffh-xlrderror-excel-xlsx-file-not-supported xmltodict==0.12.0 From 0da0d0594cf33546545a9c565bacfb0f2472eb3b Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 17:04:41 +0100 Subject: [PATCH 5/6] Automate update of npm packages --- MAINTENANCE.md | 4 ++-- Makefile | 1 + 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/MAINTENANCE.md b/MAINTENANCE.md index 1cd8d7b2..edd46185 100644 --- a/MAINTENANCE.md +++ b/MAINTENANCE.md @@ -25,11 +25,11 @@ b) can break the connection to external access points whose interface has change c) may leave recently discovered security leaks unfixed. Thus, updates should be carried out on a regular schedule. -#### Update python (pip) dependencies +#### Update python (pip) & JavaScript (npm) dependencies 1. Check out a new branch. 2. Connect to the docker (`make connect`), and run `make upgrade-requirements`. -3. Revise the changes in `requirements.txt`. +3. Revise the changes in `requirements.txt` and `package*.json`. 4. If `pip check` fails, you need to manually add the required dependencies to `docker/requirements.txt`. This is necessary because of . diff --git a/Makefile b/Makefile index 31036313..dc47df8e 100644 --- a/Makefile +++ b/Makefile @@ -191,5 +191,6 @@ db-schema-report: upgrade-requirements: pip-upgrade docker/requirements.txt --skip-virtualenv-check -p all bash -c 'pip3 check || (echo "⚠ Please define these deps explicitely in requirements.txt" && false)' + cd docker && ncu -u && npm install echo "Upgrade successful, please run the CI now before merging the" \ "upgrades into the master!" From 1617ab46fdfa66ab4bc63278edcf43b3eefc51e6 Mon Sep 17 00:00:00 2001 From: Christoph Thiede Date: Wed, 24 Nov 2021 17:04:54 +0100 Subject: [PATCH 6/6] Update npm deps --- docker/package-lock.json | 2813 +++++++++++++++++++++++++++++++------- docker/package.json | 7 +- 2 files changed, 2356 insertions(+), 464 deletions(-) diff --git a/docker/package-lock.json b/docker/package-lock.json index 1c5e43a4..6959b1cd 100644 --- a/docker/package-lock.json +++ b/docker/package-lock.json @@ -5,27 +5,27 @@ "requires": true, "dependencies": { "@babel/code-frame": { - "version": "7.12.13", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.13.tgz", - "integrity": "sha512-HV1Cm0Q3ZrpCR93tkWOYiuYIgLxZXZFVG2VgK+MBWjUqZTundupbfx2aXarXuw5Ko5aMcjtJgbSs4vUGBS5v6g==", + "version": "7.16.0", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.16.0.tgz", + "integrity": 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