From 5c7c78a49dd4b8468891baa84cb342906621d567 Mon Sep 17 00:00:00 2001 From: Lakshidaa Date: Tue, 13 Aug 2024 11:18:04 +0200 Subject: [PATCH 1/3] Update Sphinx version --- poetry.lock | 47 ++++++++++++++++++++++++----------------------- pyproject.toml | 2 +- 2 files changed, 25 insertions(+), 24 deletions(-) diff --git a/poetry.lock b/poetry.lock index b7e569d..9321211 100644 --- a/poetry.lock +++ b/poetry.lock @@ -791,14 +791,14 @@ files = [ [[package]] name = "docutils" -version = "0.17.1" +version = "0.21.2" description = "Docutils -- Python Documentation Utilities" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.9" files = [ - {file = "docutils-0.17.1-py2.py3-none-any.whl", hash = "sha256:cf316c8370a737a022b72b56874f6602acf974a37a9fba42ec2876387549fc61"}, - {file = "docutils-0.17.1.tar.gz", hash = "sha256:686577d2e4c32380bb50cbb22f575ed742d58168cee37e99117a854bcd88f125"}, + {file = "docutils-0.21.2-py3-none-any.whl", hash = "sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2"}, + {file = "docutils-0.21.2.tar.gz", hash = "sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f"}, ] [[package]] @@ -2486,39 +2486,40 @@ files = [ [[package]] name = "sphinx" -version = "4.5.0" +version = "7.4.7" description = "Python documentation generator" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.9" files = [ - {file = "Sphinx-4.5.0-py3-none-any.whl", hash = "sha256:ebf612653238bcc8f4359627a9b7ce44ede6fdd75d9d30f68255c7383d3a6226"}, - {file = "Sphinx-4.5.0.tar.gz", hash = "sha256:7bf8ca9637a4ee15af412d1a1d9689fec70523a68ca9bb9127c2f3eeb344e2e6"}, + {file = "sphinx-7.4.7-py3-none-any.whl", hash = "sha256:c2419e2135d11f1951cd994d6eb18a1835bd8fdd8429f9ca375dc1f3281bd239"}, + {file = "sphinx-7.4.7.tar.gz", hash = "sha256:242f92a7ea7e6c5b406fdc2615413890ba9f699114a9c09192d7dfead2ee9cfe"}, ] [package.dependencies] -alabaster = ">=0.7,<0.8" -babel = ">=1.3" -colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} -docutils = ">=0.14,<0.18" -imagesize = "*" -importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} -Jinja2 = ">=2.3" -packaging = "*" -Pygments = ">=2.0" -requests = ">=2.5.0" -snowballstemmer = ">=1.1" +alabaster = ">=0.7.14,<0.8.0" +babel = ">=2.13" +colorama = {version = ">=0.4.6", markers = "sys_platform == \"win32\""} +docutils = ">=0.20,<0.22" +imagesize = ">=1.3" +importlib-metadata = {version = ">=6.0", markers = "python_version < \"3.10\""} +Jinja2 = ">=3.1" +packaging = ">=23.0" +Pygments = ">=2.17" +requests = ">=2.30.0" +snowballstemmer = ">=2.2" sphinxcontrib-applehelp = "*" sphinxcontrib-devhelp = "*" sphinxcontrib-htmlhelp = ">=2.0.0" sphinxcontrib-jsmath = "*" sphinxcontrib-qthelp = "*" -sphinxcontrib-serializinghtml = ">=1.1.5" +sphinxcontrib-serializinghtml = ">=1.1.9" +tomli = {version = ">=2", markers = "python_version < \"3.11\""} [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"] -test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"] +lint = ["flake8 (>=6.0)", "importlib-metadata (>=6.0)", "mypy (==1.10.1)", "pytest (>=6.0)", "ruff (==0.5.2)", "sphinx-lint (>=0.9)", "tomli (>=2)", "types-docutils (==0.21.0.20240711)", "types-requests (>=2.30.0)"] +test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "setuptools (>=70.0)", "typing_extensions (>=4.9)"] [[package]] name = "sphinxcontrib-applehelp" @@ -3065,4 +3066,4 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", [metadata] lock-version = "2.0" python-versions = ">=3.9,<3.11" -content-hash = "4b6360898f7486f668f18573236f1de6284432cf7e02461320d5a0ed6128fa63" +content-hash = "c7cd5352d183e1641123a6c066615245e2bd5160854dae25d00c519189e16a88" diff --git a/pyproject.toml b/pyproject.toml index 5dc9519..94db71f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,7 +42,7 @@ pre-commit = "^2.10.1" ipython = "^7.21.0" pylint = "^2.14.1" invoke = "^1.7.1" -sphinx = "^4.0.0" +Sphinx = "^7.3.7" [build-system] requires = ["poetry-core>=1.0.0"] From d722998047d34a0155598ffa34c4f0f53318089b Mon Sep 17 00:00:00 2001 From: Lakshidaa Date: Tue, 13 Aug 2024 11:18:24 +0200 Subject: [PATCH 2/3] Add version 1.6.0 changelog --- CHANGELOG.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index c618ede..a46a0fe 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,11 @@ # CHANGELOG +## Version 1.6.0 - 2024-06-13 + +### Trivial changes + +- rdkit version requirements have been updated to versions above 2023.9.1. + ## Version 1.5.0 - 2024-05-27 ### Features From 6cfca89cf67ec7fddff06ee4f1edfcfc3aed3da0 Mon Sep 17 00:00:00 2001 From: Lakshidaa Date: Tue, 13 Aug 2024 11:31:23 +0200 Subject: [PATCH 3/3] Update version in pyproject --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 7b8a7a7..94db71f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "reaction_utils" -version = "1.5.0" +version = "1.6.0" description = "Utilities for working with reactions, reaction templates and template extraction" authors = ["Genheden, Samuel ", "Kannas, Christos "] license = "Apache-2.0"