.gitignore

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so
*.*~
*.save

# python #
#################################
*.ipynb_checkpoints
*__pycache__

# Generated testing images #
############################
superresolution.nii.gz
superresolution_masked.nii.gz

# LATEX #
#########
*.tex.backup
*.aux
*.toc
*.kilepr
*.bbl
*.dvi
*.ps
*.blg
*.out

# Packages #
############
# it's better to unpack these files and commit the raw source
# git has its own built in compression methods
*.7z
*.dmg
#*.gz
*.iso
*.jar
*.rar
*.tar
*.zip

# Logs and databases #
######################
*.log
*.sql
*.sqlite

# OS generated files #
######################
.DS_Store?
.DS_Store
ehthumbs.db
Icon?
Thumbs.db

# QtCreator generated files #
#############################
CMakeLists.txt.user*

# Build directories #
#####################
debug
Build
Build-dbg
Build-debug
build
build-dbg
build-debug
_build
release
bin
bin-dbg
Bin
RECON
dist
*egg-info/*

# Data derivatives  #
#####################
data/derivatives/mialsrtk*
data/derivatives/nipype*
data/derivatives/pymialsrtk*
data/derivatives/manual_masks*
data/sub-ctrl*

# Editors  #
#####################
.idea/*