Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

I have failed convert vcf to Plink(v1.07) format #20

Open
Wusun5 opened this issue Sep 14, 2022 · 0 comments
Open

I have failed convert vcf to Plink(v1.07) format #20

Wusun5 opened this issue Sep 14, 2022 · 0 comments

Comments

@Wusun5
Copy link

Wusun5 commented Sep 14, 2022

Respectly MareesAT :

When I running the command, plink --vcf ALL.2of4intersection.20100804.genotypes.vcf.gz --make-bed --out ALL.2of4intersection.20100804.genotypes, I have got the work-log below:

@----------------------------------------------------------@
| PLINK! | v1.07 | 10/Aug/2009 |
|----------------------------------------------------------|
| (C) 2009 Shaun Purcell, GNU General Public License, v2 |
|----------------------------------------------------------|
| For documentation, citation & bug-report instructions: |
| http://pngu.mgh.harvard.edu/purcell/plink/ |
@----------------------------------------------------------@

Web-based version check ( --noweb to skip )
Recent cached web-check found...Problem connecting to web

Writing this text to log file [ ALL.2of4intersection.20100804.genotypes.log ]
Analysis started: Wed Sep 14 16:15:57 2022

** Unused command line option: --vcf
** Unused command line option: ALL.2of4intersection.20100804.genotypes.vcf.gz

ERROR: Problem parsing the command line arguments.

Could you please solve it ?

All's best!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant