Skip to content

Issues: MRCIEU/TwoSampleMR

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

218 Open 209 Closed
218 Open 209 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[BUG]: Internal server error 500 when attempting to obtain a jwt from https://api.opengwas.io bug
#572 opened Oct 28, 2024 by KonstanzeTan
[BUG]: Error in density.default(BetaIV.in, weights = weights, bw = h) : non-finite 'bw' bug
#570 opened Oct 10, 2024 by Julie1130
8
mv_extract_exposures_local possibility to include a dataframe already clumped enhancement
#569 opened Oct 2, 2024 by AngeTKL
[BUG]: Error in mv_extract_exposures_local() bug
#562 opened Sep 23, 2024 by trprice08
[BUG]: P value and 95% CI doesn't match bug
#558 opened Sep 4, 2024 by Yvonnehuang1316
[BUG]: function power_prune() does not behave correctly when SNPs in a given outcome-study subset have varying sample sizes bug
#557 opened Aug 29, 2024 by phageghost
clump_data error API error? [Error in mtfrm.default(list(url = "http://gwas-api.mrcieu.ac.uk/ld/clump", : cannot mtfrm]
#555 opened Aug 26, 2024 by sj2614
1
[BUG]: Locally reading the VCF file and online reading/extraction of the number of SNPs based on ID have differences. bug
#553 opened Aug 14, 2024 by M-jk22
Hi. I am using read_outcome data function of the TwoSample MR package to extract SNPs from a local dataset. I get the below error message anytime i try. Please help "Error in data.table::fread(filename, header = TRUE, sep = sep) : Single column input contains invalid quotes. Self healing only effective when ncol>1"to extract [BUG]: bug
#548 opened Aug 2, 2024 by Nana1995365
MR single snp analysis error enhancement
#535 opened Jul 11, 2024 by tj0129edgar
Disconnected from the server
#530 opened Jul 3, 2024 by yingjielixy
[BUG]: persistent mv_extract_exposures_local() bug bug
#520 opened May 23, 2024 by bluscrubs
1
When using the mv_extract_exposures_local() function, why does the "id.exposure" column in the returned data frame contain some strange characters? bug
#518 opened May 15, 2024 by hyq9588
2
[BUG]: different results generate by mr() bug
#517 opened May 14, 2024 by SunYidan2021
2
[BUG]: Issues in running clump_data() bug
#507 opened Apr 16, 2024 by eun-codeful
2
Error in r$status_code : $ operator is invalid for atomic vectors OR Error in tophits_query(id = id, pval = pval, clump = clump, r2 = r2, kb = kb, : There was an error, please contact the developers[BUG]: bug
#498 opened Apr 3, 2024 by cainiaomengxin
6
[BUG]: about the extract_instruments function bug
#497 opened Apr 3, 2024 by zjralkc
5
[BUG]: Error in mtfrm.default(list(url = "https://api.opengwas.io/api/ld/clump", : cannot mtfrm bug
#495 opened Mar 30, 2024 by DC-Jer
27
Error in r$status_code : $ operator is invalid for atomic vectors enhancement
#482 opened Mar 14, 2024 by Cyanyyq
12
[BUG]: When I use the function available_outcomes() to get some GWAS data, it doesn't work immediately. bug
#478 opened Mar 11, 2024 by dlwlrmaabaaba
[BUG]: use mr shows warning bug
#477 opened Mar 8, 2024 by surreyskahn
[BUG]: Can't generate leaveoneout plots and forest plots bug
#475 opened Mar 3, 2024 by iikkalord
1
[BUG]: Fatal Data Error in IEU Open Gwas bug
#473 opened Feb 3, 2024 by shaopopper
[BUG]: extract_instruments（）have some reading error bug
#471 opened Jan 31, 2024 by Lincy1226
mrbase has not been used for a long time. Please restore it as soon as possible. Thank you enhancement
#469 opened Jan 21, 2024 by yongkang1230
1
ProTip! Updated in the last three days: updated:>2024-12-08.