Add Delft3D Module #78
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: MHKiT-MATLAB Unix Unit Tests | |
| on: | |
| push: | |
| branches: [master, develop, ebbflood] | |
| pull_request: | |
| branches: [master, develop, ebbflood] | |
| jobs: | |
| cache_population: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| matlab-version: [R2022b] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| mhkit-python-dir: "MHKiT-Python" | |
| steps: | |
| - name: Check out MHKiT-MATLAB | |
| uses: actions/checkout@v4 | |
| - name: Check out MHKiT-Python | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: "MHKiT-Software/MHKiT-Python" | |
| path: ${{env.mhkit-python-dir}} | |
| - name: Install & Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: MHKIT_CONDA_ENV | |
| channels: conda-forge | |
| - name: Setup Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: | | |
| conda create --name MHKIT_CONDA_ENV python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime openssl --strict-channel-priority | |
| conda activate MHKIT_CONDA_ENV | |
| conda install -c conda-forge netcdf4 | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| pip install -e . --no-deps --force-reinstall | |
| - name: pip install mhkit module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| working-directory: ${{env.mhkit-python-dir}} | |
| - name: pip install mhkit-python-utils module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| # Create the cache and add a dummy file | |
| # The dummy file ensures that the artifact download | |
| - name: Setup mhkit_webread_cache | |
| shell: bash -l {0} | |
| run: | | |
| mkdir mhkit_webread_cache | |
| touch mhkit_webread_cache/test.txt | |
| echo "Hello World" > mhkit_webread_cache/test.txt | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ matrix.matlab-version }} | |
| # OutOfProcess is required to properly call netcdf/hdf5 and works reliably on macos and ubuntu | |
| - name: Configure MATLAB Python Environment | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| printf 'pyenv(Version="%s", ExecutionMode="OutOfProcess")\n' $(python -c "import sys; print(sys.executable)") > run.m | |
| - name: Add MATLAB test commands | |
| shell: bash | |
| run: echo "version, | |
| addpath(genpath('mhkit')), | |
| import matlab.unittest.TestSuite, | |
| import matlab.unittest.TestRunner, | |
| testFolder = ['mhkit' filesep 'tests'], | |
| suite = TestSuite.fromFolder(testFolder), | |
| runner = TestRunner.withTextOutput, | |
| results = runner.run(suite), | |
| assertSuccess(results)" >> run.m | |
| - name: Output run.m | |
| shell: bash | |
| run: cat run.m | |
| - name: Run MATLAB Unit Tests | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: run | |
| startup-options: -noFigureWindows | |
| - name: Save mhkit_webread_cache directory as an artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| # GitHub Action "Name" of artifact | |
| name: mhkit_webread_cache | |
| # Filesystem path of directory | |
| path: mhkit_webread_cache | |
| main: | |
| needs: cache_population | |
| strategy: | |
| fail-fast: false | |
| # Expecting 2 * 4 * 7 - (13 * 2) = 30 jobs | |
| matrix: | |
| os: [macos-latest, ubuntu-latest] | |
| python-version: [3.8, 3.9, "3.10", 3.11] | |
| # Note: It is preferred to use an actual release name as opposed to 'latest' | |
| matlab-version: [R2021b, R2022a, R2022b, R2023a, R2023b] | |
| exclude: | |
| # cache_population job | |
| - python-version: "3.10" | |
| matlab-version: R2022b | |
| os: ubuntu-latest | |
| # Non compatiable MATLAB/Python Versions according to Mathworks | |
| - matlab-version: R2023b | |
| python-version: 3.8 | |
| - matlab-version: R2023a | |
| python-version: 3.11 | |
| - matlab-version: R2022b | |
| python-version: 3.11 | |
| - matlab-version: R2022a | |
| python-version: 3.11 | |
| - matlab-version: R2022a | |
| python-version: "3.10" | |
| - matlab-version: R2021b | |
| python-version: 3.11 | |
| - matlab-version: R2021b | |
| python-version: "3.10" | |
| - matlab-version: R2021a | |
| python-version: 3.11 | |
| - matlab-version: R2021a | |
| python-version: "3.10" | |
| - matlab-version: R2021a | |
| python-version: 3.9 | |
| - matlab-version: R2020b | |
| python-version: 3.11 | |
| - matlab-version: R2020b | |
| python-version: "3.10" | |
| - matlab-version: R2020b | |
| python-version: 3.9 | |
| # Combinations with failing tests that seem related to GitHub Actions | |
| - matlab-version: R2023b | |
| os: macos-latest | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| mhkit-python-dir: "MHKiT-Python" | |
| steps: | |
| - name: Check out MHKiT-MATLAB | |
| uses: actions/checkout@v4 | |
| - name: Check out MHKiT-Python | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: "MHKiT-Software/MHKiT-Python" | |
| path: ${{env.mhkit-python-dir}} | |
| # - name: Setup Conda | |
| # uses: s-weigand/setup-conda@v1 | |
| # with: | |
| # activate-conda: false | |
| # conda-channels: conda-forge | |
| - name: Install & Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: MHKIT_CONDA_ENV | |
| channels: conda-forge | |
| - name: Setup Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: | | |
| conda create --name MHKIT_CONDA_ENV python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 --strict-channel-priority | |
| conda activate MHKIT_CONDA_ENV | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| pip install -e . --no-deps --force-reinstall | |
| # - name: Setup Python | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Setup MHKiT Dependencies on macOS | |
| # run: brew install hdf5 netcdf | |
| # if: ${{ matrix.os == 'macos-latest' }} | |
| # - name: Setup MHKiT Dependencies on ubuntu | |
| # run: sudo apt install libhdf5-serial-dev libnetcdf-dev | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # - name: Setup MHKiT Dependencies on ubuntu | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: | | |
| # sudo apt update | |
| # sudo apt upgrade | |
| # sudo apt install build-essential | |
| # - name: Print GCC Version | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: | | |
| # gcc --version | |
| # g++ --version | |
| # - name: Setup MATLAB Path on Ubuntu | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: echo "export LD_LIBRARY_PATH=/usr/local/MATLAB/${{ matrix.matlab-version }}/sys/os/glnxa64" >> "$GITHUB_ENV" | |
| - name: Setup MATLAB Path on Ubuntu | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: echo "LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6" >> "$GITHUB_ENV" | |
| - name: Print Python executable | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import sys; print(sys.executable)" | |
| - name: Print Python Version | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python --version | |
| - name: pip install mhkit module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| working-directory: ${{env.mhkit-python-dir}} | |
| - name: pip install mhkit-python-utils module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| - name: List installed pip modules | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip freeze | |
| - name: Print MHKiT-Python Version | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import mhkit; print(mhkit.__version__)" | |
| - name: Verify MHKiT-Python Operation | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import mhkit; [ED, AP] = mhkit.river.performance.circular(30); print(ED); print(AP);" | |
| - name: Download mhkit_webread_cache artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: mhkit_webread_cache | |
| path: mhkit_webread_cache | |
| - name: Display structure mhkit_webread_cache | |
| run: ls -R | |
| working-directory: . | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v2-beta | |
| with: | |
| release: ${{ matrix.matlab-version }} | |
| # OutOfProcess is required to properly call netcdf/hdf5 and works reliably on macos and ubuntu | |
| - name: Configure MATLAB Python Environment | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| printf 'pyenv(Version="%s", ExecutionMode="OutOfProcess")\n' $(python -c "import sys; print(sys.executable)") > run.m | |
| - name: Add MATLAB test commands | |
| shell: bash | |
| run: echo "version, | |
| addpath(genpath('mhkit')), | |
| import matlab.unittest.TestSuite, | |
| import matlab.unittest.TestRunner, | |
| testFolder = ['mhkit' filesep 'tests'], | |
| suite = TestSuite.fromFolder(testFolder), | |
| runner = TestRunner.withTextOutput, | |
| results = runner.run(suite), | |
| assertSuccess(results)" >> run.m | |
| - name: Output run.m | |
| shell: bash | |
| run: cat run.m | |
| # This is a good idea but does not work because you cannot explicitly set the python execution mode | |
| # - name: Run MHKiT-MATLAB Unit Tests | |
| # uses: matlab-actions/run-tests@v1 | |
| # with: | |
| # select-by-folder: mhkit/tests | |
| - name: Run MATLAB Unit Tests | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: run | |
| startup-options: -noFigureWindows | |