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Supplying pod5 files as input? #28

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IsabelMarleen opened this issue Nov 4, 2024 · 0 comments
Open

Supplying pod5 files as input? #28

IsabelMarleen opened this issue Nov 4, 2024 · 0 comments

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@IsabelMarleen
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Is it possible to supply pod5 files as obtained from the ONT open datasets repository (https://github.com/nanoporetech/ont-open-datasets) as input to icarust? It seems superfluous for me to basecall these reads, for icarust to then reverse engineer the squiggles.

I can see in some of the examples that you can use .npy files as input, so I was wondering if there is support for pod5 files as well. If not, how do I convert pod5 files to npy arrays?

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