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index.html
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<!DOCTYPE html>
<meta charset="utf-8">
<head>
<title>Spark Knowledge Discovery</title>
<link rel="shortcut icon" href="favicon.ico" type="image/x-icon" />
<style>
body {
background: #A3BEE2;
}
.link {
stroke: black;
stroke-width: 8px;
cursor: pointer;
}
.node {
fill: black;
fill-opacity: 0.95;
stroke: black;
stroke-width: 1.5px;
cursor: pointer;
}
.link3 {
stroke: black;
stroke-width: 4px;
cursor: pointer;
}
.node3 {
fill: #FFF;
fill-opacity: 0.95;
stroke: black;
stroke-width: 1.5px;
cursor: pointer;
}
.label3 {
cursor: pointer;
}
.linkLabel3 {
cursor: pointer;
}
ul {
list-style: none;
padding: 0;
}
.row, .column {
display: -webkit-box;
display: -moz-box;
display: box;
}
.row {
width: 100%;
margin:0px;
}
.row >*,
.column >* {
display: -webkit-box;
display: -moz-box;
-webkit-box-flex: 1;
-webkit-box-align: center;
-webkit-box-pack: center;
-moz-box-flex: 1;
-moz-box-align: center;
-moz-box-pack: center;
box-flex: 1;
box-align: center;
box-pack: center;
}
.column {
-webkit-box-orient: vertical;
-moz-box-orient: vertical;
box-orient: vertical;
padding: 0px;
}
.column {
-webkit-box-align: center;
-webkit-box-pack: center;
-moz-box-align: center;
-moz-box-pack: center;
box-align: center;
box-pack: center;
}
.p3 path {
stroke: none;
fill: rgba(66, 158, 197, 0.2);
filter: url(#inner-shadow);
cursor: pointer;
}
.p3 path:first-child {
fill: #E0E4CC;
stroke: #E0E4CC;
cursor: pointer;
}
.p3 text {
font-size: 18px;
fill: black;
font-weight: 300;
font-family: arial;
cursor: pointer;
}
</style>
<style type="text/css">
#formTable, #fileTable, #svg2menu, #sumMenu{
width:100%;
margin: 1px auto;
font-family: arial;
color:#EDB;
}
#formTable input, #fileTable input, .fileUpload span, #t2-2 input, #sumMenu input, #chainMenu input, #svg2menu input,
#infoMenu input, #sumMenu input, #sumMenu select, #filter input, #predicateTable input,
#semGroupTable input, #findTable input, #LogicBuilderFileTable input, .fileUpload2 span {
width: 100%;
display: inline;
align: right;
color: #111;
border:1px solid #111;
font-family: arial;
height: 22px;
font-size: 13px;
border-radius:2px;
}
#container3container {
vertical-align: bottom;
resize: both;
overflow: hidden;
width: 800px;
padding: 2px 2px 2px 2px;
}
#infoMenu{
width:100%;
margin: 3px auto;
font-size: 13px;
font-family: arial;
color:black;
width:auto;
height:auto;
}
#infoText td {
border: 1px solid #CDF;
margin:0px 0px;
padding:0px 0px;
align: bottom;
width: 200;
max-width:300px;
background-color: white;
}
#t2-2 {
color:#256;
border:2px solid #256;
border-radius:4px;
background-color: LightCyan;
font-family: arial;
}
#t2-1 {
color:black;
margin:0px 0px;
padding:0px 0px;
border:0;
font-family: arial;
}
#panel tr{
margin:0px 0px;
padding:0px 0px;
}
#formTable caption, #fileTable caption {
height: 16px;
line-height: 18px;
font-size: 18px;
color:#222;
}
#formTable input, #fileTable input, #t2-2 input, #chainMenu input, #sumMenu input, #svg2menu input,
#infoMenu input, #sumMenu input, #sumMenu select{
width: 100%;
display: inline;
color: #111;
border:1px solid #111;
font-family: arial;
height: 26px;
font-size: 13px;
border-radius:6px;
}
#fileTable input[type="button"], #formTable input[type="button"], #t2-2 input[type="button"],
#chainMenu input[type="button"], #svg2menu input[type="button"], #infoMenu input[type="button"],
#sumMenu input[type="button"]{
position: relative;
background-color: #4B669C;
color: #EFF;
bottom: 0px;
width: 100px;
font-weight: bolder;
cursor: pointer;
}
#fileTable input[type="button"]:hover, #formTable input[type="button"]:hover, #t2-2 input[type="button"]:hover,
#chainMenu input[type="button"]:hover, #svg2menu input[type="button"]:hover,
#infoMenu input[type="button"]:hover, #sumMenu input[type="button"]:hover{
bottom: 1px;
background-color: #68A
}
#fileTable input[type="button"]:disabled, #formTable input[type="button"]:disabled, #t2-2 input[type="button"]:disabled,
#chainMenu input[type="button"]:disabled, #svg2menu input[type="button"]:disabled,
#infoMenu input[type="button"]:disabled, #sumMenu input[type="button"]:disabled{
color: #AAA
}
#formTable input[type="text"]:focus, #fileTable input[type="text"]:focus{
background-color: #FFFFD2;
}
#formTable input + span, #fileTable input + span, #t2-2 input + span, #svg2menu input + span,
#infoMenu input + span, #sumMenu input + span{
display: none;
line-height: 32px;
font-size: 12px;
font-weight: bold;
color: black;
padding:0px 0px;
position: absolute;
width: 180px;
z-index:99;
}
#saliency {
color: black;
}
a[id='a1']:focus, a[id='b']:focus, a[id='d'].focus, a[id='e'].focus, a[id='f'].focus {
outline: none;
}
storage, chains, info, appearance, searchPanel, summarization {
clear: both;
margin: 0;
padding: 0;
}
storage a[id='a1'], chains a[id='b'], searchPanel a[id='e'], summarization a[id='f']{
float: left;
background: #9FC54E;
border: 1px solid #9FC54E;
}
info a[id='c'], appearance a[id='d']{
// float: right;
background: #9FC54E;
border: 1px solid #9FC54E;
}
storage a[id='a1'], chains a[id='b']:hover, searchPanel a[id='e']:hover, summarization a[id='f']:hover{
float: left;
background: #a0a0a0;
border: 1px solid #cccccc;
}
info a[id='c']:hover, appearance a[id='d']{
float: right;
background: #a0a0a0;
border: 1px solid #cccccc;
}
.slider, .slider2, .slider3, .slider5 {
position: absolute;
display: none;
background: rgba(34, 85, 102, 0.15);
border:1.5px solid #333;
border-radius:4px;
filter: url(#dropshadow);
opacity: .95;
}
.slider {
top: 5px;
right: 0px;
width: auto;
height: auto;
padding: 1px 1px 1px 1px;
}
.slider2 {
top: 55px;
left: 0px;
width: auto;
height: auto;
padding: 45px 1px 1px 1px;
}
.slider3 {
bottom: 5px;
left: 0px;
width: auto;
height: auto;
max-width: 100%;
overflow: auto;
padding: 50px 10px 10px 10px;
}
.slider5 {
bottom: 7px;
left: 0px;
width: 50%;
height: auto;
padding: 1px 10px 1px 1px;
}
.slider9 {
bottom: 57px;
left: 0px;
width: 35%;
min-width: 300px;
height: auto;
padding: 1px 10px 12px 1px;
}
.slider a[id='a1'], .slider2 a[id='b'], .slider3 a[id='c'], .slider5 a[id='e'], .slider a[id='a1']:visited, .slider2 a[id='b']:visited, .slider3 a[id='c']:visited,
.slider5 a[id='e']:visited{
margin: 0px;
padding: 0px;
color: #9FC54E;
}
.slider2 a[id='b']:hover, .slider3 a[id='c']:hover, .slider5 a[id='e']:hover, .slider2 a[id='b']:visited:hover,
.slider3 a[id='c']:visited:hover, .slider5 a[id='e']:visited:hover,
{
margin: 0;
padding: 0;
color: #ffffff;
}
a[id='a1'].trigger, a[id='b'].trigger, a[id='e'].trigger, a[id='f'].trigger{
position: absolute;
text-decoration: none;
color: white;
font-size: 16px;
font-family: arial;
background:rgba(75, 102, 156, .85) 85% 55% no-repeat;
border:1px solid #444444;
border-radius:6px;
filter: url(#dropshadow);
display: block;
}
a[id='c'].trigger { /* this moved to here with this style */
float: left;
text-decoration: none;
color: white;
font-size: 16px;
font-family: arial;
background:rgba(75, 102, 156, .85) 85% 55% no-repeat;
border:1px solid #444444;
border-radius:6px;
display: block;
bottom: 35px;
}
a[id='b'].trigger:hover, a[id='c'].trigger:hover, a[id='e'].trigger:hover
{
background:rgba(102, 136, 170, .85) 85% 55% no-repeat;
}
a[id='b'].trigger{
top: 55px; left: 0;
padding: 10px 24px 10px 24px;
}
/* a[id='c'].trigger{
top: 5px; left: 0;
padding: 10px 25px 10px 25px;
} */ /* see changes below */
a[id='e'].trigger{
bottom: 5px; left: 0;
padding: 10px 25px 10px 25px;
}
a[id='b'].trigger:hover{
top: 54px; left: 0;
padding: 10px 24px 10px 24px;
}
a[id='e'].trigger:hover{
bottom: 4px; left: 0;
padding: 10px 25px 10px 25px;
}
a[id='h'].trigger, a[id='i'].trigger, a[id='j'].trigger{
position: absolute;
text-decoration: none;
color: white;
font-size: 16px;
font-family: arial;
background:rgba(75, 102, 156, 1) 85% 55% no-repeat;
border:1px solid #444444;
border-radius:6px;
-moz-box-shadow: 2px 2px 3px #000;
-webkit-box-shadow: 2px 2px 3px #000;
box-shadow: 2px 2px 3px #000;
display: block;
}
storage, chains, info, appearance, searchPanel, summarization, filter, filePanel, findPanel, openLogicBuilderFilePanel {
clear: both;
margin: 0;
padding: 0;
}
storage a[id='a1'], chains a[id='b'], searchPanel a[id='e'], summarization a[id='f'], filter a[id='g'],
filePanel a[id='h'], findPanel a[id='i']{
float: left;
background: #9FC54E;
border: 1px solid #9FC54E;
}
storage a[id='a1'], chains a[id='b']:hover, searchPanel a[id='e']:hover, summarization a[id='f']:hover, summarization a[id='f']:hover,
filePanel a[id='h'], findPanel a[id='i']{
float: left;
background: #a0a0a0;
border: 1px solid #cccccc;
}
#progress_bar {
width: 100%;
min-width: 400px;
padding: 3px;
border: 1px solid #000;
font-size: 14px;
clear: both;
opacity: 0;
-moz-transition: opacity 1s linear;
-o-transition: opacity 1s linear;
-webkit-transition: opacity 1s linear;
}
#progress_bar.loading {
opacity: 1.0;
}
#progress_bar .percent {
background-color: #99ccff;
height: auto;
width: 0;
}
#progress_bar2 {
width: 100%;
min-width: 400px;
padding: 3px;
border: 1px solid #000;
font-size: 14px;
clear: both;
opacity: 0;
-moz-transition: opacity 1s linear;
-o-transition: opacity 1s linear;
-webkit-transition: opacity 1s linear;
}
#progress_bar2.loading {
opacity: 1.0;
}
#progress_bar2 .percent2 {
background-color: #99ccff;
height: auto;
width: 0;
}
.fileUpload {
position: relative;
overflow: hidden;
margin-left: 4px;
height: 25px;
}
.fileUpload input.upload {
position: absolute;
top: 0;
right: 0;
margin: 0;
padding: 0;
font-size: 20px;
cursor: pointer;
opacity: 0;
filter: alpha(opacity=0);
}
.fileUpload span {
position: relative;
display: inline;
padding: 2.5px 6px;
text-align: center;
box-sizing: border-box;
-webkit-appearance: push-button;
font: -webkit-small-control;
letter-spacing: normal;
word-spacing: normal;
text-transform: none;
text-indent: 0px;
text-shadow: none;
-webkit-writing-mode: horizontal-tb;
cursor: pointer;
}
.fileUpload2 {
position: relative;
overflow: hidden;
margin-left: 4px;
height: 25px;
}
.fileUpload2 input.upload2 {
position: absolute;
top: 0;
right: 0;
margin: 0;
padding: 0;
font-size: 20px;
cursor: pointer;
opacity: 0;
filter: alpha(opacity=0);
}
.fileUpload2 span {
position: relative;
display: inline;
padding: 2.5px 6px;
text-align: center;
box-sizing: border-box;
-webkit-appearance: push-button;
font: -webkit-small-control;
letter-spacing: normal;
word-spacing: normal;
text-transform: none;
text-indent: 0px;
text-shadow: none;
-webkit-writing-mode: horizontal-tb;
cursor: pointer;
}
.fileU {
font-size: 20px;
color: white;
}
/* a[id='b'].active.trigger, a[id='c'].active.trigger, a[id='e'].active.trigger{
background: rgba(75, 102, 156, .85) 75% 55% no-repeat;
} */
/* LIZ'S STYLE ELEMENTS */
#searchSpace {
float:left;
width:37%;
height:40px;
padding:10px;
border-style:solid;
border-radius:10px;
border-width:2px;
border-color: #E45F56;
font: 2em normal Arial, sans-serif; /* 1em = 16px */
text-align:left;
background-color:#A3D39C;
color:black;
}
#searchSpace input[type="text"] {
width: 300px;
height: 28px;
}
.searchbox {
}
#skdWidgets {
float:right;
width:58%;
height:40px;
padding:10px;
border-style:solid;
border-radius:10px;
border-width:2px;
border-color: #E45F56;
background-color:#A3D39C;
color:black;
}
.skdWidgetbox {
font: 12pt bold Arial, sans-serif;
}
#workSpace {
// width:98%;
// height:100%;
padding:5px;
border-style:solid;
border-width:2px;
border-color: #E45F56;
margin: 0 auto; /* center the workspace */
/* box-shadow: 20px 20px 10px #888888; */
background-color: LightCyan;
}
#container3container {
vertical-align: bottom;
resize: both;
overflow: hidden;
width: 800px;
padding: 2px 2px 2px 2px;
}
.workSpacebox {
}
#chainSpace {
// width:100%;
// height:80%;
padding:5px;
border-style:solid;
border-width:2px;
border-color: #E45F56;
margin: 0 auto; /* center the workspace */
/* box-shadow: 20px 20px 10px #888888; */
background-color: LightCyan;
}
.chainSpacebox {
}
#otherWidgets {
display:-webkit;
float:right;
width:48%;
height:40px;
padding:10px;
border-style:solid;
border-radius:10px;
border-width:2px;
border-color: #E45F56;
background-color:#A3D39C;
color:black;
}
#otherWidgets input[type="button"], #skdWidgets input[type="button"], #searchSpace input[type="button"] {
background-color: #3399FF;
color: #EFF;
width: 130px;
height: 40px;
font-size: 12pt;
font-weight: bolder;
cursor: pointer;
}
#otherWidgets input[type="button"]:hover, #skdWidgets input[type="button"]:hover, #searchSpace input[type="button"]:hover
{
background-color:#68A;
color: #EFF;
}
.otherWidgetsbox {
font: 12pt bold Arial, sans-serif;
}
.sentenceSpace
{
display:-webkit;
float:left;
width:25%;
height:40px;
padding:10px;
border-style:solid;
border-radius:10px;
border-width:2px;
border-color: #E45F56;
background-color:#A3D39C;
color:black;
}
.sentenceSpacebox {
bottom: 5px; left: 0;
padding: 10px 25px 10px 25px;
}
a[id='c'].sentenceSpacebox {
background-color: #3399FF;
color: #EFF;
width: 130px;
height: 40px;
padding: 5px 25px 10px 25px;
font-size: 12pt;
font-weight: bolder;
cursor: pointer;
text-decoration:none;
border-top-style:solid;
border-left-style:solid;
border-color:white;
border-width:2px;
}
/* a[id='c'].sentenceSpacebox:hover {
background:rgba(102, 136, 170, .85) 85% 55% no-repeat;
} */
#extraSpace { /* will remain hidden unless we need it - will style if needed */
visibility:hidden;
}
.extraSpacebox {
}
#bySemGroup {
}
.menuGroupStyle {
padding: 5px;
font-size: 16px;
line-height: 1;
border-style: solid;
border: 1px;
border-radius: 0;
height: 30px;
}
#toDo{
font-family: arial;
font-size: 28pt;
text-align: center;
text-align: bottom;
margin-before: 1em;
margin-after: 1em;
margin-start: 0;
margin-end: 0;
color:maroon;
}
#MainTable{
color:#256;
// border:2px solid #256;
// border-radius:4px;
background-color: GhostWhite;
font-family: arial;
}
#tr1A{
color:#256;
horizontal-align:left;
border:2px solid #256;
border-radius:4px;
background-color: LightCyan;
font-family: arial;
font-size: 18px;
}
#tr1B{
color:#256;
horizontal-align:right;
border:2px solid #256;
border-radius:4px;
background-color: LightCyan;
font-family: arial;
font-size: 18px;
}
#tr2{
color:#256;
margin: 0 auto;
border:2px solid #256;
border-radius:1px;
background-color: GhostWhite;
font-family: arial;
}
#tr2A{
color:#256;
horizontal-align:left;
margin: 0 auto;
border:2px solid #256;
border-radius:4px;
background-color: #7ACCC8;
font-family: arial;
}
#tr2B{
color:#256;
horizontal-align:right;
border:2px solid #256;
border-radius:4px;
background-color: #C0C0C0;
font-family: arial;
}
#tr3{
color:#256;
border:2px solid #256;
border-radius:4px;
background-color: LightCyan;
font-family: arial;
}
#tr4{
color:#256;
border:2px solid #256;
border-radius:4px;
background-color: LightCyan;
font-family: arial;
}
.left{
float:left;
}
.right{
float:right;
}
input[type="button"]{
text-decoration: none;
color: white;
font-size: 16px;
font-family: arial;
background:rgba(75, 102, 156, .85) 85% 55% no-repeat;
border:1px solid #444444;
border-radius:6px;
display: block;
}
input[type="button"]:hover{
background:rgba(102, 136, 170, .85) 85% 55% no-repeat;
opacity: 1;
}
#resultPanel{
padding:0px 0px 0px 25%;
height: 12px;
// width: 80%;
line-height: 12px;
font-size: 12px;
color:black;
// align:right;
}
#instructions {
font-family: "Arial";
font-size: 18px;
text-decoration: underline;
border: 1px solid;
cursor: pointer;
}
#aboutUs {
font-family: "Arial";
font-size: 18px;
text-decoration: underline;
border: 1px solid;
cursor: pointer;
}
.anchorMenu {
border: 1px solid black;
background-color: MediumTurquoise ;
font-size: 14px;
font-family: arial;
display: none;
position: relative;
filter: url(#dropshadow);
border-radius:3px;
}
.anchorMenu, .anchorMenuli {
padding: 2px;
margin: 0px;
}
.anchorMenuli {
color: White;
border: 0.5px solid black;
background-color: #FFE384;
border-radius:1px;
}
.anchorMenu li:hover {
background-color: Gold;
color: black;
}
</style>
<script src="d3.v3.min.js"></script>
<script src="jquery.tools.min.js"></script>
<script src="jquery-1.9.1.js"></script>
<script src="//code.jquery.com/ui/1.10.3/jquery-ui.js"></script>
<script type="text/javascript" src="dist/knob.js"></script>
<link rel="stylesheet" href="//code.jquery.com/ui/1.10.3/themes/smoothness/jquery-ui.css" />
<script src="Blob.js"></script>
<script src="FileSaver.js"></script>
<script id="worker1" type="javascript/worker">
//wait for the start 'CalculatePi' message
//e is the event and e.data contains the JSON object
self.onmessage = function(e){
setInterval(function() {
self.postMessage("tick fuction invoked.");
try {
var xhr = new XMLHttpRequest();
xhr.open("post", "https://skr3.nih.gov/spark/servlet/SemMedDBServlet?ping=yes", false);
/* xhr.setRequestHeader("Content-Type",
"application/x-www-form-urlencoded"); */
xhr.onreadystatechange = function () {
if (xhr.readyState == 4 && xhr.status == 200) {
var result = JSON.parse(xhr.responseText);
self.postMessage(result.d);
}
};
xhr.send();
/* var xhr = $.ajax({
url: './servlet/SemMedDBServlet',
data: 'ping=yes',
dataType: 'json',
success: function(data) {
}
}); */
} catch (e) {
self.postMessage(e.toString());
}
// $.get("servlet/SemMedDBServlet","ping=yes",function(data,status){
// doNothing(data);
// });
self.postMessage("servlet function called.");
}, 60000);
};
// Rest of your worker code goes here.
</script>
</head>
<body>
<script>
function log(msg) {
// Use a fragment: browser will only render/reflow once.
// var fragment = document.createDocumentFragment();
// fragment.appendChild(document.createTextNode(msg));
// fragment.appendChild(document.createElement('br'));
// document.querySelector("#log").appendChild(fragment);
}
var blob = new Blob([
document.querySelector('#worker1').textContent
], { type: "text/javascript" })
// Note: window.webkitURL.createObjectURL() in Chrome 10+.
var worker = new Worker(window.URL.createObjectURL(blob));
worker.onmessage = function(e) {
// log("Received: " + e.data);
}
worker.postMessage(""); // Start the worker.
</script>
<div id="main">
<script id="worker1" type="javascript/worker">
// This script won't be parsed by JS engines because its type is javascript/worker.
self.onmessage = function(e) {
self.postMessage('msg from worker');
};
// Rest of your worker code goes here.
</script>