diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..07fe41c --- /dev/null +++ b/.gitattributes @@ -0,0 +1,2 @@ +# GitHub syntax highlighting +pixi.lock linguist-language=YAML linguist-generated=true diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 6fddca0..db69680 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -1,7 +1,10 @@ version: 2 updates: - # Maintain dependencies for GitHub Actions - - package-ecosystem: "github-actions" - directory: "/" + - package-ecosystem: github-actions + directory: / schedule: - interval: "weekly" + interval: monthly + groups: + dependencies: + patterns: + - "*" diff --git a/.github/workflows/pre-commit-main.yml b/.github/workflows/pre-commit-main.yml index 4f3f917..b6dc218 100644 --- a/.github/workflows/pre-commit-main.yml +++ b/.github/workflows/pre-commit-main.yml @@ -13,21 +13,15 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - # required to grab the history of the PR - fetch-depth: 0 - # Not needed since uv installs python automatically - # - uses: actions/setup-python@v5 - # with: - # python-version-file: ".python-version" - - name: Set up uv - run: curl -LsSf https://astral.sh/uv/0.4.3/install.sh | sh - # Needed for mypy, since the pre-commit hook is run in "system" mode - - name: Install dependencies - run: | - uv sync --dev --frozen - # Workaround to allow pre-commit to find the venv where dependencies are installed - - run: | - echo "$PWD/.venv/bin" >> $GITHUB_PATH - uv pip install pip - - uses: pre-commit/action@v3.0.1 + pixi-version: v0.29.0 + cache: true + environments: dev + activate-environment: true + - uses: actions/cache@v4 + with: + path: ~/.cache/pre-commit + key: pre-commit-3|${{ hashFiles('.pre-commit-config.yaml') }} + - run: pre-commit run --show-diff-on-failure --color=always --all-files + shell: bash diff --git a/.github/workflows/pre-commit-pr.yml b/.github/workflows/pre-commit-pr.yml index a53dff2..5281a7c 100644 --- a/.github/workflows/pre-commit-pr.yml +++ b/.github/workflows/pre-commit-pr.yml @@ -15,20 +15,15 @@ jobs: with: # required to grab the history of the PR fetch-depth: 0 - # Not needed since uv installs python automatically - # - uses: actions/setup-python@v5 - # with: - # python-version-file: ".python-version" - - name: Set up uv - run: curl -LsSf https://astral.sh/uv/0.4.3/install.sh | sh - # Needed for mypy, since the pre-commit hook is run in "system" mode - - name: Install dependencies - run: uv sync --dev --frozen - # Workaround to allow pre-commit to find the venv where dependencies are installed - - run: | - echo "$PWD/.venv/bin" >> $GITHUB_PATH - uv pip install pip - - uses: pre-commit/action@v3.0.1 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - # Ejecutar solo en ficheros que hayan cambiado https://github.com/pre-commit/action/issues/7 - extra_args: --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} + pixi-version: v0.29.0 + cache: true + environments: dev + activate-environment: true + - uses: actions/cache@v4 + with: + path: ~/.cache/pre-commit + key: pre-commit-3|${{ hashFiles('.pre-commit-config.yaml') }} + - run: pre-commit run --show-diff-on-failure --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} + shell: bash diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 372a5a2..5774267 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -21,15 +21,14 @@ jobs: runs-on: "ubuntu-latest" strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] + environment: [py39, py310, py311, py312] steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - python-version: ${{ matrix.python-version }} - - name: Set up uv - run: curl -LsSf https://astral.sh/uv/0.4.3/install.sh | sh + pixi-version: v0.29.0 + cache: true + environments: ${{ matrix.environment }} + activate-environment: true - name: Test with pytest - run: | - uv sync --dev --frozen - uv run pytest + run: pytest diff --git a/.gitignore b/.gitignore index 6d3cbc1..b14e0a2 100644 --- a/.gitignore +++ b/.gitignore @@ -156,4 +156,6 @@ Icon .AppleDesktop Network Trash Folder Temporary Items -.apdisk \ No newline at end of file +.apdisk# pixi environments +.pixi +*.egg-info diff --git a/.python-version b/.python-version deleted file mode 100644 index e4fba21..0000000 --- a/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.12 diff --git a/Makefile b/Makefile index 54d0322..c3fda64 100644 --- a/Makefile +++ b/Makefile @@ -7,31 +7,28 @@ DOCKER_CONTAINER=template GH_USER=GITHUB_USERNAME GH_TOKEN_FILE=GITHUB_TOKEN_PATH -# Install uv, pre-commit hooks and dependencies -# Note that `uv run` has an implicit `uv sync`, since it will (if necessary): -# - Download an install Python -# - Create a virtual environment -# - Update `uv.lock` -# - Sync the virtual env, installing and removing dependencies as required +# Install pixi, dependencies and pre-commit hooks install: - curl -LsSf https://astral.sh/uv/install.sh | sh - uv run pre-commit install + curl -fsSL https://pixi.sh/install.sh | bash + pixi install + pixi install -e dev + pixi run -e dev pre-commit install hooks: - uv run pre-commit run --all-files + pixi run -e dev pre-commit run --all-files hooks-update: - uv run pre-commit autoupdate + pixi run -e dev pre-commit autoupdate ruff: - uv run ruff format . - uv run ruff check --fix --show-fixes . + pixi run -e dev ruff format . + pixi run -e dev ruff check --fix --show-fixes . test: - uv run pytest + pixi run -e dev pytest mypy: - uv run mypy --install-types --non-interactive + pixi run -e dev mypy --install-types --non-interactive docker: build run diff --git a/README.md b/README.md index d118e7b..cc420e0 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,7 @@ Conveniently, a set of workflows via Github Actions are already installed: Tools: -- [uv](https://docs.astral.sh/uv/): manage dependencies, Python versions and virtual environments +- [pixi](https://pixi.sh/latest/): manage dependencies, Python versions and virtual environments - [ruff](https://docs.astral.sh/ruff/): lint and format Python code - [mypy](https://mypy.readthedocs.io/): check types - [pytest](https://docs.pytest.org/en/): run unit tests @@ -33,33 +33,33 @@ Tools: ### Application -Install package and pinned dependencies with the [`uv`](https://docs.astral.sh/uv/) package manager: +Install package and pinned dependencies with the [`pixi`](https://pixi.sh/latest/) package manager: -1. Install `uv`. See instructions for Windows, Linux or MacOS [here](https://docs.astral.sh/uv/getting-started/installation/). +1. Install `pixi`. See instructions for Windows, Linux or MacOS [here](https://pixi.sh/latest/). 2. Clone repository 3. Install package and dependencies in a virtual environment: ```{bash} - uv sync + pixi install ``` -4. Run any command or Python script with `uv run`, for instance: +4. Run any command or Python script with `pixi run`, for instance: ```{bash} - uv run template/main.py + pixi run template/main.py ``` Alternatively, you can also activate the virtual env and run the scripts normally: ```{bash} - source .venv/bin/activate + pixi shell ``` ### Library -Install a specific version of the package with `pip` or `uv pip`: +Install a specific version of the package with `pip`: ```{bash} pip install git+ssh://git@github.com/Komorebi-AI/template.git@0.1.0 @@ -67,48 +67,69 @@ pip install git+ssh://git@github.com/Komorebi-AI/template.git@0.1.0 ## Setup development environment (Unix) -Install [`uv`](https://docs.astral.sh/uv/getting-started/installation/) and pre-commit hooks: +Install [`pixi`](https://pixi.sh/dev/) and pre-commit hooks: ```{bash} make install ``` -`uv` will automatically create a virtual environment with the specified Python version in `.python-version` and install the dependencies from `uv.lock` (both standard and dev dependencies). It will also install the package in editable mode. +`pixi` will automatically create a virtual environment with the specified Python version in `.python-version` and install the dependencies from `pixi.lock`. It will create two environments, `default` and `dev` with the standard and dev dependencies respectively. It will also install the package in editable mode. + +The packages installed in each environment can be listed with `pixi list` or `pixi tree`: + +```{bash} +pixi list +pixi list -e dev +``` + +To run commands in the default environment use `pixi run` and to run commands in the `dev` environment use `pixi run -e dev`. You can also activate the environments with `pixi shell` or `pixi shell -e dev`. + +More information can be found in the [official documentation](https://pixi.sh/dev/tutorials/python/). ### Adding new dependencies Add dependencies with: ```{bash} -uv add +pixi add ``` Add dev dependencies with: ```{bash} -uv add --dev +pixi add --feature dev +``` + +Remove dependencies with: + +```{bash} +pixi remove ``` -Remove dependency with: +If the dependency is not available in conda, we can install the pypi version with: ```{bash} -uv remove +pixi add --pypi ``` -In all cases `uv` will automatically update the `uv.lock` file and sync the virtual environment. This can also be done manually with: +In all cases `pixi` will automatically update the `pixi.lock` file and sync the virtual environment. This can also be done manually with: ```{bash} -uv sync +pixi install ``` ### Tools -#### Run pre-commit hooks +Tools are set both in the `Makefile` and also as `pixi` tasks. They can be run using either `make ` or `pixi run -e dev `, for example: -Hooks are run on modified files before any commit. To run them manually on all files use: +```{bash} +pixi run -e dev test +``` + +#### Run tests ```{bash} -make hooks +make test ``` #### Run linter and formatter @@ -117,14 +138,16 @@ make hooks make ruff ``` -#### Run tests +#### Run type checker ```{bash} -make test +make mypy ``` -#### Run type checker +#### Run pre-commit hooks + +Hooks are run on modified files before any commit. To run them manually on all files use: ```{bash} -make mypy +make hooks ``` diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000..69a6879 --- /dev/null +++ b/pixi.lock @@ -0,0 +1,4253 @@ +version: 5 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + indexes: + - https://pypi.org/simple + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/anyio-4.4.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2024.8.30-pyhd8ed1ab_0.conda + - 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