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environment.yml
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environment.yml
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name: assembly-env
channels:
- bioconda
- r
- defaults
- conda-forge
dependencies:
- blast=2.5.0=hc0b0e79_3
- canu=1.4=1
- circos=0.69.6=4
- fastqc=0.11.8=1
- flye=2.4.1=py27he860b03_0
- glimmerhmm=3.0.4=h2d50403_2
- gnuplot=5.0.3=4
- java-jdk=8.0.92=1
- libdeflate=1.0=h14c3975_1
- minimap2=2.16=h84994c4_1
- multiqc=1.7=py_2
- perl-autoloader=5.74=pl526_2
- perl-carp=1.38=pl526_2
- perl-clone=0.41=pl526h470a237_0
- perl-config-general=2.63=pl526_0
- perl-digest-perl-md5=1.9=pl526_1
- perl-dynaloader=1.25=pl526_1
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.34=pl526_3
- perl-filesys-df=0.92=pl526h470a237_2
- perl-font-ttf=1.06=pl526_0
- perl-gd=2.70=pl526he941832_0
- perl-io-string=1.08=pl526_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-math-bezier=0.01=pl526_1
- perl-math-round=0.07=pl526_1
- perl-math-vecstat=0.08=pl526_1
- perl-module-implementation=0.09=pl526_2
- perl-module-runtime=0.016=pl526_0
- perl-number-format=1.75=pl526_3
- perl-params-validate=1.29=pl526h470a237_0
- perl-pathtools=3.73=h470a237_2
- perl-readonly=2.05=pl526_0
- perl-regexp-common=2017060201=pl526_0
- perl-scalar-list-utils=1.45=pl526h470a237_3
- perl-set-intspan=1.19=pl526_1
- perl-statistics-basic=1.6611=pl526_2
- perl-svg=2.84=pl526_0
- perl-test-more=1.001002=pl526_1
- perl-text-format=0.59=pl526_2
- perl-threaded=5.22.0=13
- perl-time-hires=1.9758=pl526_0
- perl-try-tiny=0.30=pl526_1
- perl-xml-parser=2.44=pl526h3a4f0e9_6
- perl-xsloader=0.24=pl526_0
- pilon=1.23=0
- quast=5.0.2=py27pl526ha92aebf_0
- samtools=1.9=h8571acd_11
- simplejson=3.8.1=py27_0
- spades=3.13.0=0
- colormath=3.0.0=py_2
- cryptography=2.6.1=py27h9d9f1b6_0
- libgcc=7.2.0=h69d50b8_2
- lzstring=1.0.3=py27_0
- pango=1.40.14=he752989_2
- python=2.7.15=h721da81_1008
- spectra=0.0.11=py_0
- tk=8.6.9=h84994c4_1000
- asn1crypto=0.24.0=py27_0
- backports=1.0=py27_1
- backports.functools_lru_cache=1.5=py27_1
- backports_abc=0.5=py27_0
- blas=1.0=mkl
- boost=1.67.0=py27_4
- bzip2=1.0.6=h14c3975_5
- ca-certificates=2019.1.23=0
- cairo=1.14.12=h8948797_3
- certifi=2019.3.9=py27_0
- cffi=1.12.2=py27h2e261b9_1
- chardet=3.0.4=py27_1
- click=7.0=py27_0
- curl=7.64.0=hbc83047_2
- cycler=0.10.0=py27_0
- dbus=1.13.6=h746ee38_0
- decorator=4.3.2=py27_0
- enum34=1.1.6=py27_1
- expat=2.2.6=he6710b0_0
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.9.1=h8a8886c_1
- functools32=3.2.3.2=py27_1
- future=0.17.1=py27_0
- futures=3.2.0=py27_0
- giflib=5.1.4=h14c3975_1
- glib=2.56.2=hd408876_0
- graphite2=1.3.13=h23475e2_0
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- harfbuzz=1.8.8=hffaf4a1_0
- icu=58.2=h9c2bf20_1
- idna=2.8=py27_0
- intel-openmp=2019.1=144
- ipaddress=1.0.22=py27_0
- jinja2=2.10=py27_0
- joblib=0.13.2=py27_0
- jpeg=9b=h024ee3a_2
- kiwisolver=1.0.1=py27hf484d3e_0
- krb5=1.16.1=h173b8e3_7
- libboost=1.67.0=h46d08c1_4
- libcurl=7.64.0=h20c2e04_2
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=8.2.0=hdf63c60_1
- libgd=2.2.5=hceca4fd_3
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.36=hbc83047_0
- libssh2=1.8.0=h1ba5d50_4
- libstdcxx-ng=8.2.0=hdf63c60_1
- libtiff=4.0.10=h2733197_2
- libuuid=1.0.3=h1bed415_2
- libwebp=1.0.1=h8e7db2f_0
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=he19cac6_0
- markdown=3.0.1=py27_0
- markupsafe=1.1.1=py27h7b6447c_0
- matplotlib=2.2.2=py27hb69df0a_2
- mkl=2019.1=144
- mkl_fft=1.0.10=py27ha843d7b_0
- mkl_random=1.0.2=py27hd81dba3_0
- ncurses=6.1=he6710b0_1
- networkx=2.0=py27hfc23926_0
- numpy=1.16.2=py27h7e9f1db_0
- numpy-base=1.16.2=py27hde5b4d6_0
- openjdk=8.0.152=h46b5887_1
- openssl=1.1.1b=h7b6447c_1
- pcre=8.43=he6710b0_0
- perl=5.26.2=h14c3975_0
- pip=19.0.3=py27_0
- pixman=0.38.0=h7b6447c_0
- py-boost=1.67.0=py27h04863e7_4
- pycparser=2.19=py27_0
- pyopenssl=17.4.0=py27h3149609_0
- pyparsing=2.3.1=py27_0
- pyqt=5.6.0=py27h22d08a2_6
- pysocks=1.6.8=py27_0
- python-dateutil=2.8.0=py27_0
- pytz=2018.9=py27_0
- pyyaml=3.13=py27h14c3975_0
- qt=5.6.3=h8bf5577_3
- readline=7.0=h7b6447c_5
- requests=2.21.0=py27_0
- setuptools=40.8.0=py27_0
- singledispatch=3.4.0.3=py27_0
- sip=4.18.1=py27hf484d3e_2
- six=1.12.0=py27_0
- sqlite=3.26.0=h7b6447c_0
- subprocess32=3.5.3=py27h7b6447c_0
- system=5.8=2
- tornado=5.1.1=py27h7b6447c_0
- urllib3=1.24.1=py27_0
- wheel=0.33.1=py27_0
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0