From d71418405ede2cb4e430e59e55b1b225d1d3e0a8 Mon Sep 17 00:00:00 2001 From: Stephen Newhouse Date: Fri, 4 Sep 2015 16:19:44 +0100 Subject: [PATCH] dev updates Fri 4 Sep 2015 16:19:44 BST --- containerized/ngseasy_dockerfiles/ngseasy_issac/Dockerfile | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/containerized/ngseasy_dockerfiles/ngseasy_issac/Dockerfile b/containerized/ngseasy_dockerfiles/ngseasy_issac/Dockerfile index 76e08c5..6d3503f 100644 --- a/containerized/ngseasy_dockerfiles/ngseasy_issac/Dockerfile +++ b/containerized/ngseasy_dockerfiles/ngseasy_issac/Dockerfile @@ -3,7 +3,7 @@ FROM compbio/ngseasy-base:1.0-r001 # Maintainer MAINTAINER Stephen Newhouse stephen.j.newhouse@gmail.com -RUN apt-get install -y gnuplot libnuma-dev libz-dev markdown +RUN apt-get install -y gnuplot libnuma-dev libz-dev markdown zlib1g-dev doxygen RUN cd /usr/local/pipeline && \ git clone --recursive https://github.com/sequencing/isaac_aligner.git && \ @@ -12,6 +12,10 @@ RUN cd /usr/local/pipeline && \ make && \ make install +RUN cd /usr/local/pipeline && \ + wget https://github.com/sequencing/isaac_variant_caller/archive/v1.0.7.tar.gz && \ + tar -xvf v1.0.7.tar.gz && \ + #Cleanup the temp dir RUN rm -rf /tmp/*