diff --git a/bin/ngseasy_trimmomatic b/bin/ngseasy_trimmomatic index 3503442..64dc7ae 100755 --- a/bin/ngseasy_trimmomatic +++ b/bin/ngseasy_trimmomatic @@ -409,9 +409,9 @@ fi ######################################################################################################## # adapter_fa : check of this is in palce and exit if not ######################################################################################################## -if [[ ${GENOMEBUILD} == "b37" ]]; then +if [[ "${GENOMEBUILD}" == "b37" ]]; then adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_b37/contaminant_list.fa" -elif [[ ${GENOMEBUILD} == "hg19" ]]; then +elif [[ "${GENOMEBUILD}" == "hg19" ]]; then adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_hg19/contaminant_list.fa" elif [[ "${GENOMEBUILD}" == "hs37d5" ]]; then adapter_fa="/home/pipeman/ngs_projects/ngseasy_resources/reference_genomes_hs37d5/contaminant_list.fa" diff --git a/containerized/ngseasy_dockerfiles/.DS_Store b/containerized/ngseasy_dockerfiles/.DS_Store deleted file mode 100755 index ca25b3c..0000000 Binary files a/containerized/ngseasy_dockerfiles/.DS_Store and /dev/null differ