diff --git a/docs/Manifest.toml b/docs/Manifest.toml index a8e746df..b4d80901 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -2,7 +2,12 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "174dbf4137156badc1ba8c99778859cd363232f7" +project_hash = "d9b03c5b9a0ffb7b08d9fa9b33dad0eeb887e3c3" + +[[deps.ADTypes]] +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.6" [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" @@ -30,11 +35,30 @@ git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -50,6 +74,12 @@ version = "0.4.1" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.2.0" + [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" @@ -72,9 +102,29 @@ version = "7.7.1" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "64d582bcb9c93ac741234789eeb4f16812413efb" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.6.0" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" + [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +[[deps.Attractors]] +deps = ["BlackBoxOptim", "Clustering", "ComplexityMeasures", "Distances", "Distributions", "DynamicalSystemsBase", "LinearAlgebra", "Mmap", "Neighborhood", "Optim", "ProgressMeter", "Random", "Reexport", "StateSpaceSets"] +git-tree-sha1 = "272706ec8d5f056adc77a93e43e0a59355761348" +uuid = "f3fd9213-ca85-4dba-9dfd-7fc91308fec7" +version = "1.14.0" +weakdeps = ["Makie"] + + [deps.Attractors.extensions] + AttractorsVisualizations = "Makie" + [[deps.Automa]] deps = ["PrecompileTools", "TranscodingStreams"] git-tree-sha1 = "588e0d680ad1d7201d4c6a804dcb1cd9cba79fbb" @@ -83,9 +133,9 @@ version = "1.0.3" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.1.0" +version = "1.0.1" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -119,6 +169,30 @@ git-tree-sha1 = "520c679daed011ce835d9efa7778863aad6687ed" uuid = "f1be7e48-bf82-45af-a471-ae754a193061" version = "0.2.20" +[[deps.Bijections]] +git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088" +uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" +version = "0.1.6" + +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.5" + +[[deps.BlackBoxOptim]] +deps = ["CPUTime", "Compat", "Distributed", "Distributions", "JSON", "LinearAlgebra", "Printf", "Random", "Requires", "SpatialIndexing", "StatsBase"] +git-tree-sha1 = "9c203a2515b5eeab8f2987614d2b1db83ef03542" +uuid = "a134a8b2-14d6-55f6-9291-3336d3ab0209" +version = "0.6.3" + + [deps.BlackBoxOptim.extensions] + BlackBoxOptimRealtimePlotServerExt = ["HTTP", "Sockets"] + + [deps.BlackBoxOptim.weakdeps] + HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3" + Sockets = "6462fe0b-24de-5631-8697-dd941f90decc" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" @@ -130,6 +204,17 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.4" + +[[deps.CPUTime]] +git-tree-sha1 = "2dcc50ea6a0a1ef6440d6eecd0fe3813e5671f45" +uuid = "a9c8d775-2e2e-55fc-8582-045d282d599e" +version = "1.0.0" + [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" @@ -179,6 +264,24 @@ weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" +[[deps.ChaosTools]] +deps = ["Combinatorics", "DSP", "Distances", "Distributions", "DynamicalSystemsBase", "IntervalRootFinding", "LinearAlgebra", "LombScargle", "Neighborhood", "Optim", "ProgressMeter", "Random", "Reexport", "Roots", "SpecialFunctions", "Statistics", "StatsBase"] +git-tree-sha1 = "a7d881f0ec1dbe089e4edd6315894e3293f8ae6f" +uuid = "608a59af-f2a3-5ad4-90b4-758bdf3122a7" +version = "3.1.2" + +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.12" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" @@ -230,6 +333,11 @@ git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + [[deps.CommonSubexpressions]] deps = ["MacroTools", "Test"] git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" @@ -251,6 +359,31 @@ deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.0.5+1" +[[deps.ComplexityMeasures]] +deps = ["Combinatorics", "DelayEmbeddings", "Distances", "FFTW", "LinearAlgebra", "Neighborhood", "QuadGK", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "StateSpaceSets", "StaticArrays", "Statistics", "StatsBase", "Wavelets"] +git-tree-sha1 = "bf6898c5ef0f416a90664c997f0de46b0c5dcb7f" +uuid = "ab4b797d-85ee-42ba-b621-05d793b346a2" +version = "3.4.1" + +[[deps.CompositeTypes]] +git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" +uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" +version = "0.1.3" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" @@ -267,6 +400,31 @@ git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.2" +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.CriticalTransitions]] +deps = ["Dates", "Dierckx", "DiffEqNoiseProcess", "DocStringExtensions", "DrWatson", "DynamicalSystems", "Formatting", "ForwardDiff", "HDF5", "IntervalRootFinding", "JLD2", "LinearAlgebra", "Optim", "OrdinaryDiffEq", "Printf", "ProgressBars", "ProgressMeter", "Reexport", "StaticArrays", "Statistics", "StochasticDiffEq", "Symbolics"] +git-tree-sha1 = "2c8510214ef8be7a4bca1a6487a3f4605d31f67f" +repo-rev = "main" +repo-url = "https://github.com/juliadynamics/criticaltransitions.jl.git" +uuid = "251e6cd3-3112-48a5-99dd-66efcfd18334" +version = "0.2.0" + +[[deps.DSP]] +deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "f7f4319567fe769debfcf7f8c03d8da1dd4e2fb0" +uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2" +version = "0.7.9" + [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -293,6 +451,72 @@ git-tree-sha1 = "d4e9dc4c6106b8d44e40cd4faf8261a678552c7c" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "0.8.12" +[[deps.DelayEmbeddings]] +deps = ["Distances", "Distributions", "LinearAlgebra", "Neighborhood", "Random", "Reexport", "StateSpaceSets", "Statistics", "StatsBase"] +git-tree-sha1 = "c6212fdc1cfacc78a5c537aea0a16b961a0239f4" +uuid = "5732040d-69e3-5649-938a-b6b4f237613f" +version = "2.7.4" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.Dierckx]] +deps = ["Dierckx_jll"] +git-tree-sha1 = "d1ea9f433781bb6ff504f7d3cb70c4782c504a3a" +uuid = "39dd38d3-220a-591b-8e3c-4c3a8c710a94" +version = "0.5.3" + +[[deps.Dierckx_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6596b96fe1caff3db36415eeb6e9d3b50bfe40ee" +uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" +version = "0.1.0+0" + +[[deps.DiffEqBase]] +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "3089c8295ab6d7c728cd6929121c1b4567457306" +uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" +version = "6.147.0" + + [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + + [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.DiffEqNoiseProcess]] +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "3d440ee25f48e5c7b08af71f2997daca45bf6856" +uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" +version = "5.20.1" + + [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" + + [deps.DiffEqNoiseProcess.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -305,6 +529,17 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -332,28 +567,62 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" [[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", 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"MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] +git-tree-sha1 = "0bb0a6f812213ecc8fbbcf472f4a993036858971" +uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" +version = "0.5.5" + +[[deps.DynamicalSystems]] +deps = ["Attractors", "ChaosTools", "ComplexityMeasures", "DataStructures", "DelayEmbeddings", "DynamicalSystemsBase", "FractalDimensions", "PredefinedDynamicalSystems", "RecurrenceAnalysis", "Reexport", "Scratch", "StateSpaceSets", "TimeseriesSurrogates"] +git-tree-sha1 = "dcfb5bae2139a719cdbf4eb8c97ba8ecde5492f9" +uuid = "61744808-ddfa-5f27-97ff-6e42cc95d634" +version = "3.3.3" +weakdeps = ["Makie"] + + [deps.DynamicalSystems.extensions] + DynamicalSystemsVisualizations = "Makie" + +[[deps.DynamicalSystemsBase]] +deps = ["ForwardDiff", "LinearAlgebra", "OrdinaryDiffEq", "Reexport", "Roots", "SciMLBase", "SparseArrays", "StateSpaceSets", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "37646146009532419470238c554f90afc58d0cea" +uuid = "6e36e845-645a-534a-86f2-f5d4aa5a06b4" +version = "3.5.6" + [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" @@ -365,11 +634,25 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[deps.EnzymeCore]] +git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.6.5" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" + +[[deps.ErrorfreeArithmetic]] +git-tree-sha1 = "d6863c556f1142a061532e79f611aa46be201686" +uuid = "90fa49ef-747e-5e6f-a989-263ba693cf1a" +version = "0.5.2" + [[deps.ExactPredicates]] -deps = ["IntervalArithmetic", "Random", "StaticArrays"] -git-tree-sha1 = "b3f2ff58735b5f024c392fde763f29b057e4b025" +deps = ["IntervalArithmetic", "Random", "StaticArraysCore", "Test"] +git-tree-sha1 = "276e83bc8b21589b79303b9985c321024ffdf59c" uuid = "429591f6-91af-11e9-00e2-59fbe8cec110" -version = "2.2.8" +version = "2.2.5" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -377,6 +660,17 @@ git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.5.0+0" +[[deps.ExponentialUtilities]] +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "8e18940a5ba7f4ddb41fe2b79b6acaac50880a86" +uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" +version = "1.26.1" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + [[deps.Extents]] git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" @@ -400,6 +694,29 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FastBroadcast]] +deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" +uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" +version = "0.2.8" + +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" + +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d576a29bf8bcabf4b1deb9abe88a3d7f78306ab5" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.1" + +[[deps.FastRounding]] +deps = ["ErrorfreeArithmetic", "LinearAlgebra"] +git-tree-sha1 = "6344aa18f654196be82e62816935225b3b9abe44" +uuid = "fa42c844-2597-5d31-933b-ebd51ab2693f" +version = "0.3.1" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" @@ -477,6 +794,12 @@ weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" +[[deps.FractalDimensions]] +deps = ["ComplexityMeasures", "Distances", "Distributions", "HypothesisTests", "Neighborhood", "ProgressMeter", "Random", "Reexport", "Roots", "Scratch", "SpecialFunctions", "StateSpaceSets", "Statistics"] +git-tree-sha1 = "a0915bacdefc753771b4f91e76f8524d9a6f9338" +uuid = "4665ce21-e117-4649-aed8-08bbe5ccbead" +version = "1.8.1" + [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] git-tree-sha1 = "907369da0f8e80728ab49c1c7e09327bf0d6d999" @@ -501,15 +824,32 @@ git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.10+0" +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" +version = "0.1.5" + +[[deps.GenericSchur]] +deps = ["LinearAlgebra", "Printf"] +git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" +uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" +version = "0.5.3" [[deps.GeoInterface]] deps = ["Extents"] @@ -529,6 +869,18 @@ git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" +[[deps.Git]] +deps = ["Git_jll"] +git-tree-sha1 = "51764e6c2e84c37055e846c516e9015b4a291c7d" +uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" +version = "1.3.0" + +[[deps.Git_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "b30c473c97fcc1e1e44fab8f3e88fd1b89c9e9d1" +uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" +version = "2.43.0+0" + [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" @@ -547,6 +899,12 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" +[[deps.Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.9.0" + [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] git-tree-sha1 = "af13a277efd8a6e716d79ef635d5342ccb75be61" @@ -558,24 +916,65 @@ git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" +[[deps.HDF5]] +deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" +uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" +version = "0.17.1" + + [deps.HDF5.extensions] + MPIExt = "MPI" + + [deps.HDF5.weakdeps] + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + +[[deps.HDF5_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" +version = "1.14.2+1" + [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + +[[deps.Hwloc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" +version = "2.10.0+0" + [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" version = "0.3.23" +[[deps.HypothesisTests]] +deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Printf", "Random", "Rmath", "Roots", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "4b5d5ba51f5f473737ed9de6d8a7aa190ad8c72f" +uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5" +version = "0.11.0" + [[deps.IOCapture]] deps = ["Logging", "Random"] git-tree-sha1 = "8b72179abc660bfab5e28472e019392b97d0985c" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" version = "0.2.4" +[[deps.IfElse]] +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.1" + [[deps.ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] git-tree-sha1 = "2e4520d67b0cef90865b3ef727594d2a58e0e1f8" @@ -639,26 +1038,21 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" - - [deps.Interpolations.extensions] - InterpolationsUnitfulExt = "Unitful" - - [deps.Interpolations.weakdeps] - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "0.14.7" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "RoundingEmulator"] -git-tree-sha1 = "c274ec586ea58eb7b42afd0c5d67e50ff50229b5" +deps = ["CRlibm", "FastRounding", "LinearAlgebra", "Markdown", "Random", "RecipesBase", "RoundingEmulator", "SetRounding", "StaticArrays"] +git-tree-sha1 = "5ab7744289be503d76a944784bac3f2df7b809af" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "0.22.5" -weakdeps = ["DiffRules", "RecipesBase"] +version = "0.20.9" - [deps.IntervalArithmetic.extensions] - IntervalArithmeticDiffRulesExt = "DiffRules" - IntervalArithmeticRecipesBaseExt = "RecipesBase" +[[deps.IntervalRootFinding]] +deps = ["ForwardDiff", "IntervalArithmetic", "LinearAlgebra", "Polynomials", "Reexport", "StaticArrays"] +git-tree-sha1 = "b92e9e2b356146918c4f3f3845571abcf0501594" +uuid = "d2bf35a9-74e0-55ec-b149-d360ff49b807" +version = "0.5.11" [[deps.IntervalSets]] git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" @@ -671,6 +1065,12 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.12" + [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -692,6 +1092,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.4.46" + [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" @@ -734,12 +1140,34 @@ git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "3.0.1+0" +[[deps.JumpProcesses]] +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" +uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" +version = "9.10.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" + +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.4.1" + [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.8" +[[deps.Krylov]] +deps = ["LinearAlgebra", "Printf", "SparseArrays"] +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" +uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +version = "0.9.5" + [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" @@ -763,6 +1191,58 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" +[[deps.LabelledArrays]] +deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] +git-tree-sha1 = "d1f981fba6eb3ec393eede4821bca3f2b7592cd4" +uuid = "2ee39098-c373-598a-b85f-a56591580800" +version = "1.15.1" + +[[deps.LambertW]] +git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" +uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" +version = "0.4.6" + +[[deps.Latexify]] +deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] +git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.1" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.15" + +[[deps.LazilyInitializedFields]] +git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612" +uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" +version = "1.2.2" + +[[deps.Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.8.3" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -772,6 +1252,12 @@ git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" version = "0.3.1" +[[deps.LevyArea]] +deps = ["LinearAlgebra", "Random", "SpecialFunctions"] +git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" +uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" +version = "1.0.0" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -857,6 +1343,41 @@ git-tree-sha1 = "d76cec8007ec123c2b681269d40f94b053473fcf" uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" version = "0.2.7" +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = 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"f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" @@ -876,12 +1397,47 @@ version = "0.3.27" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[deps.LombScargle]] +deps = ["FFTW", "LinearAlgebra", "Measurements", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "d64a0ce7539181136a85fd8fe4f42626387f0f26" +uuid = "fc60dff9-86e7-5f2f-a8a0-edeadbb75bd9" +version = "1.0.3" + 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"JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "656036b9ed6f942d35e536e249600bc31d0f9df8" +uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" +version = "4.2.0+0" + +[[deps.MPIPreferences]] +deps = ["Libdl", "Preferences"] +git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9" +uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" +version = "0.1.10" + +[[deps.MPItrampoline_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "77c3bd69fdb024d75af38713e883d0f249ce19c2" +uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" +version = "5.3.2+0" + [[deps.MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" @@ -900,15 +1456,32 @@ git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" version = "0.7.3" +[[deps.ManualMemory]] +git-tree-sha1 = 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git-tree-sha1 = "e8b98c868029d007102dc5f98986c81f33b0ec37" @@ -921,11 +1494,49 @@ git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" version = "0.5.7" +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.1.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "a85c6a98c9e5a2a7046bc1bb89f28a3241e1de4d" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.1" + [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" +[[deps.Measurements]] +deps = ["Calculus", "LinearAlgebra", "Printf", "Requires"] +git-tree-sha1 = "bdcde8ec04ca84aef5b124a17684bf3b302de00e" +uuid = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" +version = "2.11.0" + + [deps.Measurements.extensions] + MeasurementsBaseTypeExt = "BaseType" + MeasurementsJunoExt = "Juno" + MeasurementsRecipesBaseExt = "RecipesBase" + MeasurementsSpecialFunctionsExt = "SpecialFunctions" + MeasurementsUnitfulExt = "Unitful" + + [deps.Measurements.weakdeps] + BaseType = "7fbed51b-1ef5-4d67-9085-a4a9b26f478c" + Juno = "e5e0dc1b-0480-54bc-9374-aad01c23163d" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.MicrosoftMPI_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" +uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" +version = "10.1.4+2" + [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" @@ -950,11 +1561,22 @@ version = "0.3.4" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.1.10" +[[deps.MuladdMacro]] +git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" +uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" +version = "0.2.4" + [[deps.Multisets]] git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" +[[deps.MultivariatePolynomials]] +deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] +git-tree-sha1 = "769c9175942d91ed9b83fa929eee4fe6a1d128ad" +uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" +version = "0.5.4" + [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] git-tree-sha1 = "302fd161eb1c439e4115b51ae456da4e9984f130" @@ -967,12 +1589,30 @@ git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.3" +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.Neighborhood]] +deps = ["Distances", "NearestNeighbors", "Random", "Test"] +git-tree-sha1 = "fdea60ca30d724e76cc3b3d90d7f9d29d3d5cab5" +uuid = "645ca80c-8b79-4109-87ea-e1f58159d116" +version = "0.2.4" + [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" @@ -983,6 +1623,38 @@ version = "1.1.1" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"] +git-tree-sha1 = "756f958eb6736dab0d786426c00acc6cb25d2377" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.7.1" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -1025,6 +1697,12 @@ deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" +[[deps.OpenMPI_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "PMIx_jll", "TOML", "Zlib_jll", "libevent_jll", "prrte_jll"] +git-tree-sha1 = "f46caf663e069027a06942d00dced37f1eb3d8ad" +uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" +version = "5.0.2+0" + [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" @@ -1054,6 +1732,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.OrdinaryDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "ed171bfea6156d6458007b19790a22f4754bd501" +uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +version = "6.71.0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1065,12 +1749,24 @@ git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.11.31" +[[deps.PMIx_jll]] +deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "Zlib_jll", "libevent_jll"] +git-tree-sha1 = "8b3b19351fa24791f94d7ae85faf845ca1362541" +uuid = "32165bc3-0280-59bc-8c0b-c33b6203efab" +version = "4.2.7+0" + [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.3" +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + [[deps.Packing]] deps = ["GeometryBasics"] git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" @@ -1136,23 +1832,34 @@ git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" +[[deps.PoissonRandom]] +deps = ["Random"] +git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" +uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" +version = "0.4.4" + +[[deps.Polyester]] +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" +uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" +version = "0.7.9" + +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.2.1" + [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" [[deps.Polynomials]] -deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" +deps = ["LinearAlgebra", "RecipesBase"] +git-tree-sha1 = "a14a99e430e42a105c898fcc7f212334bc7be887" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "4.0.6" -weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] - - [deps.Polynomials.extensions] - PolynomialsChainRulesCoreExt = "ChainRulesCore" - PolynomialsFFTWExt = "FFTW" - PolynomialsMakieCoreExt = "MakieCore" - PolynomialsMutableArithmeticsExt = "MutableArithmetics" +version = "3.2.4" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1160,12 +1867,30 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" +[[deps.PreallocationTools]] +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a" +uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" +version = "0.4.20" + + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" version = "1.2.0" +[[deps.PredefinedDynamicalSystems]] +deps = ["DynamicalSystemsBase", "Reexport", "SparseArrays", "StaticArrays", "Statistics"] +git-tree-sha1 = "082f44959e71bef816a7d41c2383fd0df83c95df" +uuid = "31e2f376-db9e-427a-b76e-a14f56347a14" +version = "1.2.0" + [[deps.Preferences]] deps = ["TOML"] git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" @@ -1186,6 +1911,12 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +[[deps.ProgressBars]] +deps = ["Printf"] +git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256" +uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568" +version = "1.5.1" + [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" @@ -1212,6 +1943,18 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" @@ -1233,11 +1976,53 @@ git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" +[[deps.RecurrenceAnalysis]] +deps = ["DelimitedFiles", "Distances", "Graphs", "LinearAlgebra", "Random", "Reexport", "SparseArrays", "StateSpaceSets", "Statistics", "UnicodePlots"] +git-tree-sha1 = "226b47ed2a90d8f646d8cc7f1c578d72592a314a" +uuid = "639c3291-70d9-5ea2-8c5b-839eba1ee399" +version = "2.0.6" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "1bbc4bb050165cc57ca2876cd53cc23395948650" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.10.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.21" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RegistryInstances]] +deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"] +git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51" +uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3" +version = "0.1.0" + [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" @@ -1250,6 +2035,12 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" +[[deps.ResettableStacks]] +deps = ["StaticArrays"] +git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" +version = "1.1.1" + [[deps.RingLists]] deps = ["Random"] git-tree-sha1 = "f39da63aa6d2d88e0c1bd20ed6a3ff9ea7171ada" @@ -1268,15 +2059,81 @@ git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.2" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + [[deps.RoundingEmulator]] git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b" uuid = "5eaf0fd0-dfba-4ccb-bf02-d820a40db705" version = "0.2.1" +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.12" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "16dd1ea058e1c080d7f1ba47a9094f87a1c50e4c" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.26.2" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.7" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -1286,6 +2143,11 @@ version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +[[deps.SetRounding]] +git-tree-sha1 = "d7a25e439d07a17b7cdf97eecee504c50fedf5f6" +uuid = "3cc68bcd-71a2-5612-b932-767ffbe40ab0" +version = "0.2.1" + [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" @@ -1320,6 +2182,22 @@ git-tree-sha1 = "f65caa24a622f985cc341de81d3f9744435d0d0f" uuid = "55797a34-41de-5266-9ec1-32ac4eb504d3" version = "0.8.6" +[[deps.SimpleNonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "873a1bf90744acfa615e45cd5dddfd0ee89a094f" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "1.5.0" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" + SimpleNonlinearSolveStaticArraysExt = "StaticArrays" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.SimplePartitions]] deps = ["AbstractLattices", "DataStructures", "Permutations"] git-tree-sha1 = "e182b9e5afb194142d4668536345a365ea19363a" @@ -1344,6 +2222,11 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + [[deps.Sixel]] deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" @@ -1364,6 +2247,37 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.17.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + +[[deps.SpatialIndexing]] +git-tree-sha1 = "84efe17c77e1f2156a7a0d8a7c163c1e1c7bdaed" +uuid = "d4ead438-fe20-5cc5-a293-4fd39a41b74c" +version = "0.1.6" + [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" @@ -1386,6 +2300,29 @@ git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.1" +[[deps.StateSpaceSets]] +deps = ["Distances", "LinearAlgebra", "Neighborhood", "Random", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "fcfc8b9ce0f43bcb39e6bd8664855dc501a63886" +uuid = "40b095a5-5852-4c12-98c7-d43bf788e795" +version = "1.4.5" + +[[deps.Static]] +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" @@ -1424,14 +2361,23 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" +[[deps.StochasticDiffEq]] +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "f5eb6f4794a2a56d6b9d3dcdb9d6cb217a2ac660" +uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" +version = "6.65.0" + +[[deps.StrideArraysCore]] +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c" +uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" +version = "0.5.2" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -1460,6 +2406,33 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" +[[deps.SymbolicIndexingInterface]] +git-tree-sha1 = "b74cb9508b6c0aa91d729dcbc7e35faf8998c549" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.7" + +[[deps.SymbolicUtils]] +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "849b1dfb1680a9e9f2c6023f79a49b694fb6d0da" +uuid = "d1185830-fcd6-423d-90d6-eec64667417b" +version = "1.5.0" + +[[deps.Symbolics]] +deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils"] +git-tree-sha1 = "0cad5780cc4c0f02ca1c27f68231526131c4537e" +uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" +version = "5.21.0" + + [deps.Symbolics.extensions] + SymbolicsGroebnerExt = "Groebner" + SymbolicsPreallocationToolsExt = "PreallocationTools" + SymbolicsSymPyExt = "SymPy" + + [deps.Symbolics.weakdeps] + Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" + PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1492,12 +2465,34 @@ version = "0.1.1" deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.2" + [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" version = "0.6.8" +[[deps.TimerOutputs]] +deps = ["ExprTools", "Printf"] +git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" +version = "0.5.23" + +[[deps.TimeseriesSurrogates]] +deps = ["AbstractFFTs", "DSP", "DelayEmbeddings", "Distances", "Distributions", "Interpolations", "LinearAlgebra", "LombScargle", "Random", "StateSpaceSets", "Statistics", "StatsAPI", "StatsBase", "Wavelets"] +git-tree-sha1 = "a20272be82e0f712651c5a76f0df985f5fd5d6fe" +uuid = "c804724b-8c18-5caa-8579-6025a0767c70" +version = "2.6.4" +weakdeps = ["Makie"] + + [deps.TimeseriesSurrogates.extensions] + TimeseriesSurrogatesVisualizations = "Makie" + [[deps.TranscodingStreams]] git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" @@ -1507,11 +2502,28 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.1.20" + +[[deps.Tricks]] +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.8" + [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" uuid = "981d1d27-644d-49a2-9326-4793e63143c3" version = "0.1.0" +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + [[deps.TupleTools]] git-tree-sha1 = "41d61b1c545b06279871ef1a4b5fcb2cac2191cd" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" @@ -1540,11 +2552,56 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[deps.UnicodePlots]] +deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "LinearAlgebra", "MarchingCubes", "NaNMath", "PrecompileTools", "Printf", "Requires", "SparseArrays", "StaticArrays", "StatsBase"] +git-tree-sha1 = "92032ca730338662506bb3d0eb562375faf6c06a" +uuid = "b8865327-cd53-5732-bb35-84acbb429228" +version = "3.6.3" + + [deps.UnicodePlots.extensions] + FreeTypeExt = ["FileIO", "FreeType"] + ImageInTerminalExt = "ImageInTerminal" + IntervalSetsExt = "IntervalSets" + TermExt = "Term" + UnitfulExt = "Unitful" + + [deps.UnicodePlots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + FreeType = "b38be410-82b0-50bf-ab77-7b57e271db43" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Term = "22787eb5-b846-44ae-b979-8e399b8463ab" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Unityper]] +deps = ["ConstructionBase"] +git-tree-sha1 = "25008b734a03736c41e2a7dc314ecb95bd6bbdb0" +uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" +version = "0.1.6" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.65" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" + +[[deps.Wavelets]] +deps = ["DSP", "FFTW", "LinearAlgebra", "Reexport", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "f514f9b16f6a15552c6aad7b03afc7b9a8478ef4" +uuid = "29a6e085-ba6d-5f35-a997-948ac2efa89a" +version = "0.10.0" + [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" +version = "0.5.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -1623,6 +2680,12 @@ git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" version = "0.2.3+0" +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "eddd19a8dea6b139ea97bdc8a0e2667d4b661720" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.0.6+1" + [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" @@ -1640,6 +2703,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" +[[deps.libevent_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"] +git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb" +uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec" +version = "2.1.13+1" + [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" @@ -1674,6 +2743,12 @@ deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" +[[deps.prrte_jll]] +deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"] +git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0" +uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9" +version = "3.0.2+0" + [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" diff --git a/docs/Project.toml b/docs/Project.toml index 8dc5ccf7..27715a52 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,7 +1,8 @@ [deps] CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" +CriticalTransitions = "251e6cd3-3112-48a5-99dd-66efcfd18334" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244" [compat] -Documenter = "0.27" +Documenter = "1" diff --git a/docs/make.jl b/docs/make.jl index 7fcde289..2e890543 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -1,6 +1,6 @@ -using CriticalTransitions using Documenter using DocumenterCitations +using CriticalTransitions bib = CitationBibliography( joinpath(@__DIR__, "src", "refs.bib"); @@ -12,7 +12,7 @@ makedocs(; doctest=false, format = Documenter.HTML(prettyurls = get(ENV, "CI", nothing) == "true", mathengine = Documenter.MathJax2()), - + warnonly = [:doctest, :missing_docs], pages=Any[ "Home" => "index.md", "Quickstart" => "quickstart.md", @@ -29,7 +29,7 @@ makedocs(; "Predefined systems" => "man/systems.md", "Development stage" => "man/dev.md" ], - plugins=[bib] + plugins=[bib], ) deploydocs( diff --git a/docs/src/man/utils.md b/docs/src/man/utils.md index 3aad7682..58337079 100644 --- a/docs/src/man/utils.md +++ b/docs/src/man/utils.md @@ -21,7 +21,6 @@ ls = lyapunovspectrum(CoupledODEs(sys), 10000) ```@docs CoupledODEs(sys::StochSystem; diffeq, t0=0.0) -StochSystem(ds::CoupledODEs, σ, g, pg, Σ, process) attractor_mapper(sys::StochSystem, attractors, eps=0.01; kwargs...) ``` @@ -56,7 +55,7 @@ is_iip(f::Function) ### Generalized vector norms ```@docs anorm(vec, A; square=false) -subnorm(vec; directions=[1,...,N]) +subnorm(vec; kwargs...) ``` ### `length(sys.u)`-dimensional box diff --git a/src/StochSystem.jl b/src/StochSystem.jl index 931254c6..85e02366 100644 --- a/src/StochSystem.jl +++ b/src/StochSystem.jl @@ -62,9 +62,9 @@ DynamicalSystems.CoupledODEs(sys.f, SVector{length(sys.u)}(sys.u), [sys.pf]; dif to_cds(sys::StochSystem) = CoupledODEs(sys) """ - StochSystem(ds::CoupledODEs, σ, g, pg, Σ, process) + StochSystem(ds::CoupledODEs; σ, g, pg, Σ, process) Converts a [`CoupledODEs`](https://juliadynamics.github.io/DynamicalSystems.jl/stable/tutorial/#DynamicalSystemsBase.CoupledODEs) system into a [`StochSystem`](@ref). """ -StochSystem(ds::DynamicalSystemsBase.CoupledODEs, σ=0.0, g=idfunc, pg=nothing, Σ=I(length(get_state(ds))), process="WhiteGauss") = +StochSystem(ds::DynamicalSystemsBase.CoupledODEs; σ=0.0, g=idfunc, pg=nothing, Σ=I(length(get_state(ds))), process="WhiteGauss") = StochSystem(dynamic_rule(ds), [ds.p0], get_state(ds), σ, g, pg, Σ, process) \ No newline at end of file diff --git a/src/utils.jl b/src/utils.jl index 5942cb0b..f5c54e35 100644 --- a/src/utils.jl +++ b/src/utils.jl @@ -112,7 +112,7 @@ function anorm(vec, A; square=false) end; """ - subnorm(vec; directions=[1,...,N]) + subnorm(vec; kwargs...) Returns the Euclidean norm of the vector `vec`; however, if `directions` are specified, the norm is only computed along the specified components of the vector, i.e. in a subspace of dimension `length(directions)`. diff --git a/systems/stommel.jl b/systems/stommel.jl index 442d6583..591fce7c 100755 --- a/systems/stommel.jl +++ b/systems/stommel.jl @@ -19,7 +19,7 @@ as described in [^Stommel 1961]. The original values in the bistable regime are * `"diffu_abs"`: Absolute flow law Q2 in eq. (2.4) of [^Cessi1994] * `"diffu_sqr"`: Absolute flow law Q3 in eq. (2.4) of [^Cessi1994] -See also [`cessi`](@Ref). +See also [`cessi`](@ref). [^Stommel1961]: [Stommel (1961). Thermohaline Convection with two stable regimes of flow]