DESCRIPTION

Package: imctoolkits
Type: Package
Title: A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data
Version: 1.0.0
Date: 2021-12-12
Authors@R: person("Jinyan", "Huang", role = c("aut", "cre"), email = "huangjinyan@zju.edu.cn")
Description: A toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data.
    imctoolkits is a valuable tool to build a 
    tree-shaped trajectory using IMC data. 
    The application of imctoolkits ranges from clustering 
    and dimensionality reduction to trajectory reconstruction 
    and pseudotime estimation. It offers complete analyzing 
    workflow for IMC data. 
Depends: R (>= 4.0)
Imports: Rtsne, ggplot2, destiny, gmodels, glue,
        flowUtils, Biobase, Matrix, flowCore, sva,
        matrixStats, methods, mclust, prettydoc, BiocNeighbors,
        cluster, pheatmap, scatterpie, umap, scatterplot3d,
        limma, stringr, grDevices, grid, stats,FlowSOM,
        jhtools, fs, tidyverse, igraph, data.table
Suggests: BiocGenerics, knitr, RColorBrewer,
        rmarkdown, testthat, BiocStyle
biocViews: CellBiology, Clustering, Visualization, 
        Software, CellBasedAssays, 
        NetworkInference, Network
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
BugReports: https://github.com/JhuangLab/imctoolkits/issues
git_url: https://github.com/JhuangLab/imctoolkits
URL: http://www.r-project.org, https://github.com/JhuangLab/imctoolkits