CPP_BIDS

CPP_BIDS
Output format
- Modality agnostic aspect
Documentation
Contributing

A set of function for matlab and octave to create BIDS-compatible folder structure and filenames for the output of behavioral, EEG, fMRI, eyetracking studies.

Documentation

Installation
How to use it: jupyter notebooks
General documentation

Contributing

Feel free to open issues to report a bug and ask for improvements.

If you want to contribute, have a look at our contributing guidelines that are meant to guide you and help you get started. If something is not clear or you get stuck: it is more likely we did not do good enough a job at explaining things. So do not hesitate to open an issue, just to ask for clarification.

Style guide

We use camelCase.
We keep the McCabe complexity as reported by the check_my_code function below 15.
We use the MISS_HIT linter to automatically fix some linting issues.

BIDS naming convention

Here are the naming templates used.

Behavior

sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_events.tsv
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_events.json
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_beh.tsv
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_beh.json

BOLD

sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_ce-<label>][_dir-<label>][_rec-<label>][_run-<index>][_echo-<index>]_<contrast_label>.nii[.gz]

iEEG

sub-<label>[_ses-<label>]_task-<task_label>[_run-<index>]_ieeg.json

EEG

sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.json

MEG

???

Eyetracker

current format <matches>_recording-eyetracking_physio.tsv.gz

future BEP format in a dedicated eyetracker folder

sub-<participant_label>[_ses-<label>][_acq-<label>]_task-<task_label>_eyetrack.<manufacturer_specific_extension>

Stim and physio

<matches>[_recording-<label>]_physio.tsv.gz
<matches>[_recording-<label>]_physio.json
<matches>[_recording-<label>]_stim.tsv.gz
<matches>[_recording-<label>]_stim.json