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Add List-specific taxonomy filters to API-help. #108

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Add List-specific taxonomy filters to API-help.

Add List-specific taxonomy filters to API-help. #108

GitHub Actions / JUnit Tests failed Sep 20, 2024 in 0s

56 passed, 2 failed and 2 skipped

Tests failed

Report Passed Failed Skipped Time
gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml 54✅ 2❌ 2⚪ 185s
gepi/gepi-webapp/target/surefire-reports/TEST-TestSuite.xml 2✅ 25s

❌ gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml

58 tests were completed in 185s with 54 passed, 2 failed and 2 skipped.

Test suite Passed Failed Skipped Time
TestSuite 54✅ 2❌ 2⚪ 185s

❌ TestSuite

de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest
  ❌ highlightMerging on highlightMerging(de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest)
	java.util.NoSuchElementException: No value present
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest
  ⚪ testReorderBipartiteEventResultArguments2 on testReorderBipartiteEventResultArguments2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
  ⚪ testReorderBipartiteEventResultArguments3 on testReorderBipartiteEventResultArguments3(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
  ✅ testReorderBipartiteEventResultArguments on testReorderBipartiteEventResultArguments(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceTest)
de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest
  ✅ testOpenSearchOnlyBinary on testOpenSearchOnlyBinary(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testFulltextSearchWithTaxFilter on testFulltextSearchWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithTaxFilter on testClosedSearchEventsWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithSentenceParagraphFilter on testOpenSearchWithSentenceParagraphFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchWithSentenceParagraphFilter on testClosedSearchWithSentenceParagraphFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchEventWithSectionFilter on testOpenSearchEventWithSectionFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testAggregationsOpenSearch on testAggregationsOpenSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ getTotalNumberOfEvents on getTotalNumberOfEvents(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithSentenceParagraphFilter2 on testOpenSearchWithSentenceParagraphFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithEventTypeFilter1 on testOpenSearchWithEventTypeFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithEventTypeFilter2 on testOpenSearchWithEventTypeFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearch on testOpenSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEvents on testClosedSearchEvents(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithEventTypeFilter1 on testClosedSearchEventsWithEventTypeFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithEventTypeFilter2 on testClosedSearchEventsWithEventTypeFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithEventTypeFilter3 on testClosedSearchEventsWithEventTypeFilter3(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testAggregationsFulltextSearch on testAggregationsFulltextSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testHighlighting on testHighlighting(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithSentenceFilter1 on testClosedSearchEventsWithSentenceFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testClosedSearchEventsWithSentenceFilter2 on testClosedSearchEventsWithSentenceFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithSentenceFilter1 on testOpenSearchWithSentenceFilter1(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithSentenceFilter2 on testOpenSearchWithSentenceFilter2(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testAggregationsClosedSearch on testAggregationsClosedSearch(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
  ✅ testOpenSearchWithTaxFilter on testOpenSearchWithTaxFilter(de.julielab.gepi.core.retrieval.services.EventRetrievalServiceIntegrationTest)
de.julielab.gepi.core.services.GeneIdServiceTest
  ✅ mapIdentifierToPrefix on mapIdentifierToPrefix(de.julielab.gepi.core.services.GeneIdServiceTest)
  ✅ determineIdTypes on determineIdTypes(de.julielab.gepi.core.services.GeneIdServiceTest)
de.julielab.gepi.core.services.GeneIdServiceIntegrationTest
  ✅ getSymbolsFromFamilyConceptNode on getSymbolsFromFamilyConceptNode(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames2 on getPossibleAggregationConceptNames2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames3 on getPossibleAggregationConceptNames3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames4 on getPossibleAggregationConceptNames4(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames5 on getPossibleAggregationConceptNames5(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames6 on getPossibleAggregationConceptNames6(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getConceptNamesFromDatabase2 on getConceptNamesFromDatabase2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getConceptNamesFromDatabase3 on getConceptNamesFromDatabase3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertUp2AggregateIds on convertUp2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getGeneInfo on getGeneInfo(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertGeneNames2AggregateIds on convertGeneNames2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getFamilyAndOrthologyGroupNodeProperties on getFamilyAndOrthologyGroupNodeProperties(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ conceptNameNormalization on conceptNameNormalization(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertGene2AggregateIds on convertGene2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getSymbolsFromFamilyConceptNode2 on getSymbolsFromFamilyConceptNode2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getSymbolsFromFamilyConceptNode3 on getSymbolsFromFamilyConceptNode3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertGeneNames2GeneIdsWithTaxIds on convertGeneNames2GeneIdsWithTaxIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertGeneNames2ConceptIds on convertGeneNames2ConceptIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertGo2ConceptId on convertGo2ConceptId(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getPossibleAggregationConceptNames on getPossibleAggregationConceptNames(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convert on convert(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getFamilyAndOrthologyGroupNodeProperties2 on getFamilyAndOrthologyGroupNodeProperties2(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getFamilyAndOrthologyGroupNodeProperties3 on getFamilyAndOrthologyGroupNodeProperties3(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getFamilyAndOrthologyGroupNodeProperties4 on getFamilyAndOrthologyGroupNodeProperties4(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ convertPrefixedGene2AggregateIds on convertPrefixedGene2AggregateIds(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
  ✅ getConceptNamesFromDatabase on getConceptNamesFromDatabase(de.julielab.gepi.core.services.GeneIdServiceIntegrationTest)
de.julielab.gepi.core.services.GePiDataServiceTest
  ❌ writeExcelSummary on writeExcelSummary(de.julielab.gepi.core.services.GePiDataServiceTest)
	java.lang.NullPointerException
  ✅ testGetPairsWithCommonTarget on testGetPairsWithCommonTarget(de.julielab.gepi.core.services.GePiDataServiceTest)

✅ gepi/gepi-webapp/target/surefire-reports/TEST-TestSuite.xml

2 tests were completed in 25s with 2 passed, 0 failed and 0 skipped.

Test suite Passed Failed Skipped Time
TestSuite 2✅ 25s

✅ TestSuite

de.julielab.gepi.webapp.services.TempFileCleanerTest
  ✅ cleanup on cleanup(de.julielab.gepi.webapp.services.TempFileCleanerTest)
de.julielab.gepi.webapp.services.StatisticsCollectorTest
  ✅ testGetNumDocuments on testGetNumDocuments(de.julielab.gepi.webapp.services.StatisticsCollectorTest)

Annotations

Check failure on line 27 in gepi/gepi-core/src/test/java/de/julielab/gepi/core/retrieval/services/EventResponseProcessingServiceTest.java

See this annotation in the file changed.

@github-actions github-actions / JUnit Tests

TestSuite ► de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest ► highlightMerging on highlightMerging(de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest) 

Failed test found in:
  gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml
Error:
  java.util.NoSuchElementException: No value present
Raw output 
java.util.NoSuchElementException: No value present
	at de.julielab.gepi.core.retrieval.services.EventResponseProcessingServiceTest.highlightMerging(EventResponseProcessingServiceTest.java:27)

Check failure on line 86 in gepi/gepi-core/src/test/java/de/julielab/gepi/core/services/GePiDataServiceTest.java

See this annotation in the file changed.

@github-actions github-actions / JUnit Tests

TestSuite ► de.julielab.gepi.core.services.GePiDataServiceTest ► writeExcelSummary on writeExcelSummary(de.julielab.gepi.core.services.GePiDataServiceTest) 

Failed test found in:
  gepi/gepi-core/target/surefire-reports/TEST-TestSuite.xml
Error:
  java.lang.NullPointerException
Raw output 
java.lang.NullPointerException
	at de.julielab.gepi.core.services.GePiDataServiceTest.writeExcelSummary(GePiDataServiceTest.java:86)
View more details on GitHub Actions