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ITK ERROR: ITK only supports orthonormal direction cosines. No orthonormal definition found! #108

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youwanM opened this issue Feb 20, 2024 · 0 comments
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@youwanM
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youwanM commented Feb 20, 2024

Hi,

I've been trying to use animaLesionEvolutionDetection but I encounter an issue with some images (binary mask) that generate the following error :
image
I've printed the header of one of the faulty Nifti files:

<class 'nibabel.nifti1.Nifti1Header'> object, endian='<'
sizeof_hdr : 348
data_type : b''
db_name : b''
extents : 0
session_error : 0
regular : b''
dim_info : 0
dim : [ 3 16 528 528 1 1 1 1]
intent_p1 : 0.0
intent_p2 : 0.0
intent_p3 : 0.0
intent_code : none
datatype : uint8
bitpix : 8
slice_start : 0
pixdim : [-1. 2.5 0.4945055 0.49450547 1. 1.

]
vox_offset : 0.0
scl_slope : nan
scl_inter : nan
slice_end : 0
slice_code : unknown
xyzt_units : 0
cal_max : 0.0
cal_min : 0.0
slice_duration : 0.0
toffset : 0.0
glmax : 0
glmin : 0
descrip : b''
aux_file : b''
qform_code : unknown
sform_code : aligned
quatern_b : -0.0071783955
quatern_c : -0.9994841
quatern_d : 0.024298374
qoffset_x : 16.604021
qoffset_y : -191.18349
qoffset_z : -380.4215
srow_x : [-2.4977944e+00 6.6215163e-03 1.9683635e-02 1.6604021e+01]
srow_y : [ 3.8271479e-02 4.9387062e-01 2.3878830e-02 -1.9118349e+02]
srow_z : [ 9.7767472e-02 -2.4159092e-02 4.9353623e-01 -3.8042151e+02]
intent_name : b''
magic : b'n+1'_

I am using Anima 4.2 precompiled for Fedora.

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