From 9455b04b8108a586129bfd2da10f2e49deb93c82 Mon Sep 17 00:00:00 2001 From: Carl Helmick Date: Fri, 12 May 2023 09:12:34 -0300 Subject: [PATCH] Update ms_scripts.rst Fixed spelling and adjusted wording --- docs/source/ms_scripts.rst | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/source/ms_scripts.rst b/docs/source/ms_scripts.rst index b272f9385..53ec354ce 100644 --- a/docs/source/ms_scripts.rst +++ b/docs/source/ms_scripts.rst @@ -1,12 +1,12 @@ Multiple sclerosis scripts ========================== -This section describes Anima scripts for helping multiple sclerosis (MS) lesions segmentation. +This section describes Anima scripts created to segment lesions from brain MRI images in multiple sclerosis (MS) patients. -MSSEG 2016 prerpocessing script +MSSEG 2016 preprocessing script ------------------------------- -This script (**animaMSExamPreparationMSSEG2016.py**) combines several processing steps to preprocess a single time point containing T1, T2/PD, FLAIR and Gd T1 images using the same script that was used in the MSSEG 2016 challenge [1]. It relies on a precomputed brain mask that may be obtained from `volBrain `_ (as for the challenge) or :doc:`the brain extraction scripts of Anima `. The script performs denoising, bias correctino, brain masking and registration to the FLAIR image as explained in [1]. +This script (**animaMSExamPreparationMSSEG2016.py**) combines several processing steps to preprocess a single time point containing T1, T2/PD, FLAIR and Gd T1 images using the same script that was used in the MSSEG 2016 challenge [1]. It relies on a precomputed brain mask that may be obtained from `volBrain `_ (as for the challenge) or :doc:`the brain extraction scripts of Anima `. The script performs denoising, bias correction, brain masking and registration to the FLAIR image as explained in [1]. MSSEG-2 longitudinal preprocessing script -----------------------------------------