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environment.yml
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environment.yml
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name: NanoASV
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- amply=0.1.6=pyhd8ed1ab_0
- annotated-types=0.7.0=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argcomplete=3.5.1=pyhd8ed1ab_0
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- attrs=24.2.0=pyh71513ae_0
- binutils_impl_linux-64=2.43=h4bf12b8_2
- bioconductor-biobase=2.62.0=r43ha9d7317_2
- bioconductor-biocgenerics=0.48.1=r43hdfd78af_2
- bioconductor-biomformat=1.30.0=r43hdfd78af_0
- bioconductor-biostrings=2.70.1=r43ha9d7317_2
- bioconductor-data-packages=20231203=hdfd78af_0
- bioconductor-genomeinfodb=1.38.1=r43hdfd78af_1
- bioconductor-genomeinfodbdata=1.2.11=r43hdfd78af_1
- bioconductor-iranges=2.36.0=r43ha9d7317_2
- bioconductor-multtest=2.58.0=r43ha9d7317_1
- bioconductor-phyloseq=1.46.0=r43hdfd78af_0
- bioconductor-rhdf5=2.46.1=r43hf17093f_1
- bioconductor-rhdf5filters=1.14.1=r43hf17093f_1
- bioconductor-rhdf5lib=1.24.0=r43ha9d7317_2
- bioconductor-s4vectors=0.40.2=r43ha9d7317_2
- bioconductor-xvector=0.42.0=r43ha9d7317_2
- bioconductor-zlibbioc=1.48.0=r43ha9d7317_2
- brotli-python=1.1.0=py312h2ec8cdc_2
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.2=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- cairo=1.18.0=hebfffa5_3
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.17.1=py312h06ac9bb_0
- charset-normalizer=3.4.0=pyhd8ed1ab_0
- chopper=0.9.0=hdcf5f25_0
- clang=19.1.2=default_h9e3a008_1
- clang-19=19.1.2=default_hb5137d0_1
- click=8.1.7=unix_pyh707e725_0
- coin-or-cbc=2.10.12=h8b142ea_1
- coin-or-cgl=0.60.9=h1d3f3f2_0
- coin-or-clp=1.17.10=h07f2a63_0
- coin-or-osi=0.108.11=h6514dde_1
- coin-or-utils=2.11.12=h99da652_1
- coincbc=2.10.12=1_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- coloredlogs=15.0.1=pyhd8ed1ab_3
- conda-inject=1.3.2=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cowpy=1.1.5=pyhd8ed1ab_1
- curl=8.10.1=hbbe4b11_0
- datrie=0.8.2=py312h66e93f0_8
- docutils=0.21.2=pyhd8ed1ab_0
- dpath=2.2.0=pyha770c72_0
- eido=0.2.4=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- expat=2.6.3=h5888daf_0
- fasttree=2.1.11=h031d066_4
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gawk=5.3.1=hcd3d067_0
- gcc_impl_linux-64=14.2.0=h6b349bd_1
- gfortran_impl_linux-64=14.2.0=hc73f493_1
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=hac33072_2
- graphite2=1.3.13=h59595ed_1003
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=14.2.0=h2c03514_1
- h2=4.1.0=pyhd8ed1ab_0
- harfbuzz=9.0.0=hda332d3_1
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.21=h5efdd21_0
- humanfriendly=10.0=pyhd8ed1ab_6
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=75.1=he02047a_0
- idna=3.10=pyhd8ed1ab_0
- immutables=0.21=py312h66e93f0_0
- importlib_resources=6.4.5=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.4=pyhd8ed1ab_0
- jq=1.5=0
- jsonschema=4.23.0=pyhd8ed1ab_0
- jsonschema-specifications=2024.10.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=pyh31011fe_1
- k8=1.2=h6618dc6_3
- kernel-headers_linux-64=3.10.0=he073ed8_18
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- ld_impl_linux-64=2.43=h712a8e2_2
- lerc=4.0.0=h27087fc_0
- libasprintf=0.22.5=he8f35ee_3
- libblas=3.9.0=25_linux64_openblas
- libcblas=3.9.0=25_linux64_openblas
- libclang-cpp19.1=19.1.2=default_hb5137d0_1
- libcurl=8.10.1=hbbe4b11_0
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.3=h5888daf_0
- libffi=3.4.2=h7f98852_5
- libgcc=14.2.0=h77fa898_1
- libgcc-devel_linux-64=14.2.0=h41c2201_101
- libgcc-ng=14.2.0=h69a702a_1
- libgettextpo=0.22.5=he02047a_3
- libgfortran=14.2.0=h69a702a_1
- libgfortran-ng=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libglib=2.82.2=h2ff4ddf_0
- libgomp=14.2.0=h77fa898_1
- libiconv=1.17=hd590300_2
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=25_linux64_openblas
- liblapacke=3.9.0=25_linux64_openblas
- libllvm19=19.1.2=ha7bfdaf_0
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.28=pthreads_h94d23a6_0
- libpng=1.6.44=hadc24fc_0
- libsanitizer=14.2.0=h2a3dede_1
- libsqlite=3.47.0=hadc24fc_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-devel_linux-64=14.2.0=h41c2201_101
- libstdcxx-ng=14.2.0=h4852527_1
- libtiff=4.7.0=h6565414_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.7=he7c6b58_4
- libzlib=1.3.1=hb9d3cd8_2
- logmuse=0.2.8=pyhd8ed1ab_0
- mafft=7.525=h031d066_1
- make=4.4.1=hb9d3cd8_2
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=3.0.2=py312h178313f_0
- mdurl=0.1.2=pyhd8ed1ab_0
- minimap2=2.28=he4a0461_3
- mpfr=4.2.1=h90cbb55_3
- nbformat=5.10.4=pyhd8ed1ab_0
- ncurses=6.5=he02047a_1
- numpy=2.1.2=py312h58c1407_0
- openssl=3.4.0=hb9d3cd8_0
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.2.3=py312hf9745cd_1
- pango=1.54.0=h4c5309f_1
- pcre2=10.44=hba22ea6_2
- pephubclient=0.4.4=pyhd8ed1ab_0
- peppy=0.40.7=pyhd8ed1ab_1
- pip=24.2=pyh8b19718_1
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.3=pyhd8ed1ab_0
- platformdirs=4.3.6=pyhd8ed1ab_0
- pluggy=1.5.0=pyhd8ed1ab_0
- porechop=0.2.4=py312h28adbb1_8
- psutil=6.1.0=py312h66e93f0_0
- pthread-stubs=0.4=hb9d3cd8_1002
- pulp=2.8.0=py312h7900ff3_0
- pycparser=2.22=pyhd8ed1ab_0
- pydantic=2.9.2=pyhd8ed1ab_0
- pydantic-core=2.23.4=py312h12e396e_0
- pygments=2.18.0=pyhd8ed1ab_0
- pyparsing=3.2.0=pyhd8ed1ab_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=8.3.3=pyhd8ed1ab_0
- python=3.12.7=hc5c86c4_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.20.0=pyhd8ed1ab_0
- python-tzdata=2024.2=pyhd8ed1ab_0
- python_abi=3.12=5_cp312
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.2=py312h66e93f0_1
- r-ade4=1.7_22=r43h0d28552_2
- r-ape=5.8=r43hb424bfc_1
- r-base=4.3.3=h68df6d5_15
- r-bitops=1.0_9=r43h2b5f3a1_0
- r-cli=3.6.3=r43h0d4f4ea_1
- r-cluster=2.1.6=r43hbcb9c34_1
- r-codetools=0.2_20=r43hc72bb7e_1
- r-colorspace=2.1_1=r43hdb488b9_0
- r-cpp11=0.5.0=r43hc72bb7e_0
- r-crayon=1.5.3=r43hc72bb7e_1
- r-data.table=1.15.4=r43h5f06984_1
- r-digest=0.6.37=r43h0d4f4ea_0
- r-dplyr=1.1.4=r43h0d4f4ea_1
- r-ellipsis=0.3.2=r43hb1dbf0f_3
- r-fansi=1.0.6=r43hb1dbf0f_1
- r-farver=2.1.2=r43ha18555a_1
- r-foreach=1.5.2=r43hc72bb7e_3
- r-generics=0.1.3=r43hc72bb7e_3
- r-ggplot2=3.5.1=r43hc72bb7e_1
- r-glue=1.8.0=r43h2b5f3a1_0
- r-gtable=0.3.6=r43hc72bb7e_0
- r-igraph=2.0.3=r43h510f1ce_1
- r-isoband=0.2.7=r43ha18555a_3
- r-iterators=1.0.14=r43hc72bb7e_3
- r-jsonlite=1.8.9=r43h2b5f3a1_0
- r-labeling=0.4.3=r43hc72bb7e_1
- r-lattice=0.22_6=r43hb1dbf0f_1
- r-lifecycle=1.0.4=r43hc72bb7e_1
- r-magrittr=2.0.3=r43hb1dbf0f_3
- r-mass=7.3_60.0.1=r43hb1dbf0f_1
- r-matrix=1.6_5=r43he966344_1
- r-mgcv=1.9_1=r43h0d28552_1
- r-munsell=0.5.1=r43hc72bb7e_1
- r-nlme=3.1_165=r43hbcb9c34_1
- r-permute=0.9_7=r43hc72bb7e_3
- r-pillar=1.9.0=r43hc72bb7e_2
- r-pixmap=0.4_13=r43hc72bb7e_1
- r-pkgconfig=2.0.3=r43hc72bb7e_4
- r-plyr=1.8.9=r43ha18555a_1
- r-r6=2.5.1=r43hc72bb7e_3
- r-rcolorbrewer=1.1_3=r43h785f33e_3
- r-rcpp=1.0.13=r43h0d4f4ea_0
- r-rcurl=1.98_1.16=r43he8228da_1
- r-reshape2=1.4.4=r43h0d4f4ea_4
- r-rlang=1.1.4=r43ha18555a_1
- r-scales=1.3.0=r43hc72bb7e_1
- r-sp=2.1_4=r43hdb488b9_1
- r-stringi=1.8.4=r43h33cde33_3
- r-stringr=1.5.1=r43h785f33e_1
- r-survival=3.7_0=r43hdb488b9_1
- r-tibble=3.2.1=r43hdb488b9_3
- r-tidyselect=1.2.1=r43hc72bb7e_1
- r-utf8=1.2.4=r43hb1dbf0f_1
- r-vctrs=0.6.5=r43h0d4f4ea_1
- r-vegan=2.6_8=r43h9ad1c49_0
- r-viridislite=0.4.2=r43hc72bb7e_2
- r-withr=3.0.2=r43hc72bb7e_0
- readline=8.2=h8228510_1
- referencing=0.35.1=pyhd8ed1ab_0
- requests=2.32.3=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.9.3=pyhd8ed1ab_0
- rpds-py=0.20.0=py312h12e396e_1
- samtools=1.21=h50ea8bc_0
- sed=4.8=he412f7d_0
- setuptools=75.1.0=pyhd8ed1ab_0
- shellingham=1.5.4=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slack-sdk=3.33.2=pyha770c72_0
- slack_sdk=3.33.2=hd8ed1ab_0
- smart_open=7.0.5=pyhd8ed1ab_1
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=8.24.1=hdfd78af_0
- snakemake-interface-common=1.17.4=pyhdfd78af_0
- snakemake-interface-executor-plugins=9.3.2=pyhdfd78af_0
- snakemake-interface-report-plugins=1.1.0=pyhdfd78af_0
- snakemake-interface-storage-plugins=3.3.0=pyhdfd78af_0
- snakemake-minimal=8.24.1=pyhdfd78af_0
- sysroot_linux-64=2.17=h4a8ded7_18
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.2=pyhd8ed1ab_0
- time=1.9=hd590300_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h8bc8fbc_6
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.2=pyhd8ed1ab_0
- tomlkit=0.13.2=pyha770c72_0
- traitlets=5.14.3=pyhd8ed1ab_0
- tree=2.1.3=h4bc722e_0
- typer=0.12.5=pyhd8ed1ab_0
- typer-slim=0.12.5=pyhd8ed1ab_0
- typer-slim-standard=0.12.5=hd8ed1ab_0
- typing-extensions=4.12.2=hd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024b=hc8b5060_0
- ubiquerg=0.8.0=pyhd8ed1ab_0
- urllib3=2.2.3=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- vsearch=2.29.1=h6a68c12_0
- wheel=0.44.0=pyhd8ed1ab_0
- wrapt=1.16.0=py312h66e93f0_1
- xmltodict=0.14.2=pyhd8ed1ab_0
- xorg-libice=1.1.1=hb9d3cd8_1
- xorg-libsm=1.2.4=he73a12e_1
- xorg-libx11=1.8.10=h4f16b4b_0
- xorg-libxau=1.0.11=hb9d3cd8_1
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxrender=0.9.11=hb9d3cd8_1
- xorg-libxt=1.3.0=hb9d3cd8_2
- xorg-xorgproto=2024.1=hb9d3cd8_1
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yq=3.4.3=pyhd8ed1ab_0
- yte=1.5.4=pyha770c72_0
- zipp=3.20.2=pyhd8ed1ab_0
- zlib=1.3.1=hb9d3cd8_2
- zstandard=0.23.0=py312hef9b889_1
- zstd=1.5.6=ha6fb4c9_0
prefix: /home/imago/installs/miniconda3/envs/NanoASV