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Figure 1c Reproduction #149

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prakruthiburra opened this issue Jul 16, 2024 · 3 comments
Open

Figure 1c Reproduction #149

prakruthiburra opened this issue Jul 16, 2024 · 3 comments

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@prakruthiburra
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prakruthiburra commented Jul 16, 2024

Is the data to reproduce figure 1(c) publicly available? Which exons fell into each of the three bins etc.

@kishorejaganathan
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inclusion_rates.csv

@mrunyan1
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mrunyan1 commented Jul 31, 2024

@kishorejaganathan , Is there a file available with the exon's SpliceAI-10K acceptor and donor score associated with each inclusion rate?

@kishorejaganathan
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InclusionRates.zip
c is for models trained on canonical splice sites only, g is for models trained on gtex splice sites as well.

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