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SVTYPE missing from variant lines #186

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bartcharbon opened this issue Dec 12, 2023 · 1 comment
Open

SVTYPE missing from variant lines #186

bartcharbon opened this issue Dec 12, 2023 · 1 comment

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@bartcharbon
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We're using expansion hunter 5.0.0 to call STRs.

Based on the docs I would expect variant lines in the VCf to have a INFO field "SVTYPE=STR".
The INFO/SVTYPE field vcfheader is present, but the field is missing from the actual data lines.

@andreasssh
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If this is important for you, then I just fixed this issue in my fork of EH 5.0.0, accessible @ https://gitlab.com/andreassh/ExpansionHunter/

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