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VCF header incomplete #182

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OgnjenMilicevic opened this issue Nov 4, 2023 · 0 comments
Open

VCF header incomplete #182

OgnjenMilicevic opened this issue Nov 4, 2023 · 0 comments

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@OgnjenMilicevic
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Hello,

I obtained a VCF with an incomplete header:

##fileformat=VCFv4.1 ##INFO=<ID=VARID,Number=1,Type=String,Description="Variant identifier as specified in the variant catalog"> ##FILTER=<ID=LowDepth,Description="The overall locus depth is below 10x or number of reads spanning one or both breakends is below 5"> ##FILTER=<ID=PASS,Description="All filters passed"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=LC,Number=1,Type=Float,Description="Locus coverage">

The BAM files I very small, and most variants are lowdepth.

Can something be done about this?

Thanks!

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