[FIX] failing unitests for neo_tools with Neo 0.13.0 (NeuralEnsemble#617

)

* fix failing unitests for neo_tools

* fix unit test in spike_train_synchrony

* fix unittest test_correct_transfer_of_spiketrain_attributes

* fix pep8

* remove cast to list

* edit inline comments for clarity

* add same object to tests by getting length of list like object in advance

* fix pep8

* remove space

* remove workaround for Neo Issue #1405

* remove space

* add version cap for numpy <2

* undo numpy requiremnts, unintentional commit

---------

Co-authored-by: Moritz-Alexander-Kern <[email protected]>

elephant/spike_train_synchrony.py

@@ -356,11 +356,7 @@ def delete_synchrofacts(self, threshold, in_place=False, mode='delete'):
                     # replace link to spiketrain in segment
                     new_index = self._get_spiketrain_index(
                         segment.spiketrains, st)
-                    # Todo: Simplify following lines once Neo SpikeTrainList
-                    # implments indexed assignment of entries (i.e., stl[i]=st)
-                    spiketrainlist = list(segment.spiketrains)
-                    spiketrainlist[new_index] = new_st
-                    segment.spiketrains = spiketrainlist
+                    segment.spiketrains[new_index] = new_st
                 except ValueError:
                     # st is not in this segment even though it points to it
                     warnings.warn(f"The SpikeTrain at index {idx} of the "

elephant/test/test_neo_tools.py

@@ -1167,10 +1167,6 @@ def test__get_all_spiketrains__segment(self):
             supported_objects=[neo.core.Segment, neo.core.SpikeTrain])
         targ = copy.deepcopy(obj)
         obj.spiketrains.append(obj.spiketrains[0])
-        # TODO: The following is the original line of the test, however, this
-        # fails with Neo 0.10.0
-        # Reinstate once issue is fixed
-        # obj.spiketrains.extend(obj.spiketrains)
 
         res0 = nt.get_all_spiketrains(obj)
 
@@ -1320,7 +1316,6 @@ def test__get_all_events__segment(self):
             supported_objects=[neo.core.Segment, neo.core.Event])
         targ = copy.deepcopy(obj)
 
-        obj.events.extend(obj.events)
         res0 = nt.get_all_events(obj)
 
         targ = targ.events
@@ -1469,7 +1464,7 @@ def test__get_all_epochs__segment(self):
         obj = generate_one_simple_segment(
             supported_objects=[neo.core.Segment, neo.core.Epoch])
         targ = copy.deepcopy(obj)
-        obj.epochs.extend(obj.epochs)
+
         res0 = nt.get_all_epochs(obj)
 
         targ = targ.epochs