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Oaklib annotate function does not return all substring containing values as expected #805

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bsantan opened this issue Sep 27, 2024 · 0 comments

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@bsantan
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bsantan commented Sep 27, 2024

Example: "runoak -i sqlite:obo:chebi annotate “butyrate”" should have returned all strings that contain butyrate, but, butyr, etc but only returns "butyrate" and "b" containing results.

result:
predicate_id: rdfs:label
object_id: CHEBI:17968
object_label: butyrate
match_string: butyrate
matches_whole_text: false
subject_start: 2
subject_end: 9


predicate_id: oio:hasExactSynonym
object_id: CHEBI:17968
object_label: butyrate
match_string: butyrate
matches_whole_text: false
subject_start: 2
subject_end: 9


predicate_id: oio:hasRelatedSynonym
object_id: CHEBI:27560
object_label: B
match_string: b
matches_whole_text: false
subject_start: 2
subject_end: 2


predicate_id: oio:hasRelatedSynonym
object_id: CHEBI:36370
object_label: b
match_string: b
matches_whole_text: false
subject_start: 2
subject_end: 2


predicate_id: oio:hasRelatedSynonym
object_id: CHEBI:41264
object_label: Bu
match_string: bu
matches_whole_text: false
subject_start: 2
subject_end: 3

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