Merge pull request #1564 from HumanCellAtlas/staging

Release from staging to master 2024-07-15
HumanCellAtlas · Jul 15, 2024 · 47f03f3 · 47f03f3
2 parents e83ca04 + ec6c4d3
commit 47f03f3
Show file tree

Hide file tree

Showing 6 changed files with 13 additions and 2 deletions.
diff --git a/changelog.md b/changelog.md
@@ -9,6 +9,10 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://
 
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
+### [type/file/sequence_file.json - v9.6.0] - 2024-07-15
+### Added
+Added sequencing_run_batch field in the sequencing_file - Fixes#1557
+
 ### [type/protocol/analysis/analysis_protocol.json - v10.3.0] - 2024-04-15
 ### Added
 Added intron_inclusion field in analysis_protocol Fixes#1554

diff --git a/docs/jsonBrowser/type.md b/docs/jsonBrowser/type.md
@@ -21,6 +21,7 @@ read_index | The sequencing read this file represents. | string | yes |  | Read
 lane_index | The lane that this file was sequenced from. | integer | no |  | Lane index |  | 1
 read_length | The length of a sequenced read in this file, in nucleotides. | integer | no |  | Read length |  | 51
 insdc_run_accessions | An International Nucleotide Sequence Database Collaboration (INSDC) run accession. | array | no |  | INSDC run accession |  | SRR0000000
+sequencing_run_batch | An identifier that indicates which runs were sequenced in the same batch. | string | no |  | Sequencing run batch |  | run1; sequencing_batch_37; NV0087
 library_prep_id | A unique ID for the library preparation. | string | no |  | Library preparation ID |  | tech_rep_group_001
 
 ## Image file

diff --git a/infrastructure_testing_files/current/dcp_integration_test_metadata_1_SS2_bundle.xlsx b/infrastructure_testing_files/current/dcp_integration_test_metadata_1_SS2_bundle.xlsx
diff --git a/...ure_testing_files/current/not_accessioned_dcp_integration_test_metadata_1_SS2_bundle.xlsx b/...ure_testing_files/current/not_accessioned_dcp_integration_test_metadata_1_SS2_bundle.xlsx
diff --git a/json_schema/type/file/sequence_file.json b/json_schema/type/file/sequence_file.json
@@ -80,6 +80,12 @@
             "example": "SRR0000000",
             "guidelines": "Enter accession if run has been archived. Accession can be from the DDBJ, NCBI, or EMBL-EBI and must start with DRR, SRR, or ERR, respectively."
         },
+        "sequencing_run_batch": {
+            "description": "An identifier that indicates which runs were sequenced in the same batch.",
+            "type": "string",
+            "user_friendly": "Sequencing run batch",
+            "example": "run1; sequencing_batch_37; NV0087"
+        },
         "library_prep_id" : {
             "description": "A unique ID for the library preparation.",
             "type": "string",

diff --git a/json_schema/versions.json b/json_schema/versions.json
@@ -1,5 +1,5 @@
 {
-    "last_update_date": "2024-04-15T10:44:17Z",
+    "last_update_date": "2024-07-15T12:34:46Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
@@ -100,7 +100,7 @@
                 "analysis_file": "7.0.0",
                 "image_file": "2.5.0",
                 "reference_file": "3.5.0",
-                "sequence_file": "9.5.0",
+                "sequence_file": "9.6.0",
                 "supplementary_file": "2.5.0"
             },
             "process": {