From 366ee87a440f55e1eaee2883fdce868600816354 Mon Sep 17 00:00:00 2001
From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com>
Date: Mon, 30 Sep 2024 13:46:13 +0100
Subject: [PATCH] @arschat Revert removal of required_fields.md
---
docs/jsonBrowser/required_fields.md | 39 +++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/docs/jsonBrowser/required_fields.md b/docs/jsonBrowser/required_fields.md
index b15d709c..6052fb77 100644
--- a/docs/jsonBrowser/required_fields.md
+++ b/docs/jsonBrowser/required_fields.md
@@ -354,3 +354,42 @@ _There are no required properties in schema Growth conditions_
_There are no required properties in schema Medical tests_
### Disease profile
_There are no required properties in schema Disease profile_
+### Preservation and storage
+_There are no required properties in schema Preservation and storage_
+### Death
+Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
+--- | --- | --- | --- | --- | --- | ---
+cause_of_death | Conditions resulting in death. | string | | Cause of death | | Hypoxic brain damage; Sudden cardiac arrest
+### Familial relationship
+_There are no required properties in schema Familial relationship_
+### Medical history
+_There are no required properties in schema Medical history_
+### Cell morphology
+_There are no required properties in schema Cell morphology_
+### State of specimen
+_There are no required properties in schema State of specimen_
+### Timecourse
+Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
+--- | --- | --- | --- | --- | --- | ---
+value | The numerical value in Timecourse unit associated with a time interval used in the experiment. | string | | Timecourse value | | 2; 5.5-10.5
+unit | The unit in which the Timecourse value is expressed. | object | [See module time_unit_ontology](module.md#time-unit-ontology) | Timecourse unit | |
+### Mouse-specific
+_There are no required properties in schema Mouse-specific_
+### Purchased reagents
+_There are no required properties in schema Purchased reagents_
+### INSDC experiment
+Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
+--- | --- | --- | --- | --- | --- | ---
+insdc_experiment_accession | An International Nucleotide Sequence Database Collaboration (INSDC) experiment accession. | string | | INSDC experiment accession | | SRX0000000
+### Barcode
+Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
+--- | --- | --- | --- | --- | --- | ---
+barcode_read | The read in which the barcode is found. | string | | Barcode-containing read | Read 1, Read 2, Read 3, Read 4, i7 Index, i5 Index | Should be one of: Read 1, Read 2, i7 Index, or i5 Index.
+barcode_offset | The 0-based offset of start of barcode in read. | integer | | Barcode offset | | 0
+barcode_length | Length of barcode in nucleotides. | integer | | Barcode length | | 28
+### 10x-specific
+_There are no required properties in schema 10x-specific_
+### Plate-based sequencing
+Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
+--- | --- | --- | --- | --- | --- | ---
+plate_label | A label or name for the plate on which the well is located. | string | | Plate label | | 2217