From 366ee87a440f55e1eaee2883fdce868600816354 Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Mon, 30 Sep 2024 13:46:13 +0100 Subject: [PATCH] @arschat Revert removal of required_fields.md --- docs/jsonBrowser/required_fields.md | 39 +++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/docs/jsonBrowser/required_fields.md b/docs/jsonBrowser/required_fields.md index b15d709c..6052fb77 100644 --- a/docs/jsonBrowser/required_fields.md +++ b/docs/jsonBrowser/required_fields.md @@ -354,3 +354,42 @@ _There are no required properties in schema Growth conditions_ _There are no required properties in schema Medical tests_ ### Disease profile _There are no required properties in schema Disease profile_ +### Preservation and storage +_There are no required properties in schema Preservation and storage_ +### Death +Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example +--- | --- | --- | --- | --- | --- | --- +cause_of_death | Conditions resulting in death. | string | | Cause of death | | Hypoxic brain damage; Sudden cardiac arrest +### Familial relationship +_There are no required properties in schema Familial relationship_ +### Medical history +_There are no required properties in schema Medical history_ +### Cell morphology +_There are no required properties in schema Cell morphology_ +### State of specimen +_There are no required properties in schema State of specimen_ +### Timecourse +Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example +--- | --- | --- | --- | --- | --- | --- +value | The numerical value in Timecourse unit associated with a time interval used in the experiment. | string | | Timecourse value | | 2; 5.5-10.5 +unit | The unit in which the Timecourse value is expressed. | object | [See module time_unit_ontology](module.md#time-unit-ontology) | Timecourse unit | | +### Mouse-specific +_There are no required properties in schema Mouse-specific_ +### Purchased reagents +_There are no required properties in schema Purchased reagents_ +### INSDC experiment +Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example +--- | --- | --- | --- | --- | --- | --- +insdc_experiment_accession | An International Nucleotide Sequence Database Collaboration (INSDC) experiment accession. | string | | INSDC experiment accession | | SRX0000000 +### Barcode +Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example +--- | --- | --- | --- | --- | --- | --- +barcode_read | The read in which the barcode is found. | string | | Barcode-containing read | Read 1, Read 2, Read 3, Read 4, i7 Index, i5 Index | Should be one of: Read 1, Read 2, i7 Index, or i5 Index. +barcode_offset | The 0-based offset of start of barcode in read. | integer | | Barcode offset | | 0 +barcode_length | Length of barcode in nucleotides. | integer | | Barcode length | | 28 +### 10x-specific +_There are no required properties in schema 10x-specific_ +### Plate-based sequencing +Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example +--- | --- | --- | --- | --- | --- | --- +plate_label | A label or name for the plate on which the well is located. | string | | Plate label | | 2217