From 5ac86832abcaf2d9a07e62183a1f2979ec51c71b Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 10:47:17 +0100 Subject: [PATCH 001/128] Fixes #12 --- json_schema/cell_line.json | 4 + json_schema/sample.json | 166 ++++++++------------------ json_schema/sample_from_organism.json | 149 +++++++++++++++++++++++ 3 files changed, 201 insertions(+), 118 deletions(-) create mode 100644 json_schema/sample_from_organism.json diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 88967b5b3..6bfd80e28 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -55,6 +55,10 @@ "publication": { "description": "what is the official name for the cell line?", "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/publication.json" + }, + "cell_cycle": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here" } }, "title": "cell_line", diff --git a/json_schema/sample.json b/json_schema/sample.json index cd743a295..8f79534dc 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,68 +1,9 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", - "patternProperties": { - "^characteristics_.*$": { - "description": "FIelds that begin with sample.characteristics_ can contain any value, and the field name can be anything after the prefix", - "type": "string" - } - }, + "description": "Information on a biosample." , "properties": { - "biosd_sample": { - "description": "EBI biosample ID", - "type": "string" - }, - "body_part": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "A more detailed position within the organ where body came from." - }, - "cell_cycle": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here" - }, - "cell_line": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/cell_line.json", - "description": "Description of cell line if any that this came from." - }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", - "description": "type and schema for this object" - }, - "culture_type": { - "description": "either \"primary culture,\" \"tissue\" or \"cell_line\"", - "enum": [ - "cell line", - "primary culture", - "tissue" - ] - }, - "disassociation_protocol": { - "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", - "pattern": "^P-....-.*$", - "type": "string" - }, - "donor": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/donor.json", - "description": "Information on the donors that the sample came from." - }, - "ena_sample": { - "description": "European nucleotide archive sample ID", - "pattern": "^ERS.*$", - "type": "string" - }, - "enrichment": { - "description": "How cells were enriched for specific type or to weed out common types after disassociation.", - "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/enrichment.json" - }, - "type": "array" - }, - "geo_sample": { - "description": "NCBI GEO sample accession", - "pattern": "^GSM.*$", - "type": "string" - }, + "core": { "$ref": "core.json" }, "id": { "description": "A unique ID for this sample", "type": "string" @@ -70,31 +11,7 @@ "name": { "description": "A short descriptive name for sample. Should be enough to distinguish it from other samples in the project", "type": "string" - }, - "ncbi_biosample": { - "description": "NCBI biosample ID", - "type": "string" - }, - "organ": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "The organ that the sample came from. \"Blood\" and \"connective tissue\" count as organs." - }, - "preservation": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/preservation.json", - "description": "State of body_part at collection and how it was preserved after removal." - }, - "project_id": { - "description": "The id field of the project that this connects to", - "type": "string" - }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" - }, + }, "submit_date": { "description": "When project was first submitted to database.", "pattern": "^2...-..-..$", @@ -103,24 +20,11 @@ "submitter_id": { "description": "ID of contact who first submitted project", "type": "string" - }, - "supplementary_files": { - "description": "Sample level supplementary files.", - "items": { - "type": "string" - }, - "type": "array" - }, + }, "title": { "description": "A descriptive phrase or sentence, ideally about 60 characters.", "type": "string" - }, - "total_estimated_cells": { - "description": "Total estimated number of cells in sample. May be 1 for well based assays.", - "maximum": 1000000000.0, - "minimum": 0.1, - "type": "number" - }, + }, "update_date": { "description": "When project was last updated", "pattern": "^2...-..-..$", @@ -129,21 +33,47 @@ "updater_id": { "description": "ID of contact who last updated project", "type": "string" - }, - "well": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/well.json", - "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" + }, + "details": { + "oneOf": [ + { "$ref": "donor.jon" }, + { "$ref": "sample_from_organism.jsomn" }, + { "$ref": "cell_line.json" }, + { "$ref": "cell_suspension.json" }, + { "$ref": "organoid.json" } + ] + }, + "project_id": { + "description": "The id field of the project that this connects to", + "type": "string" + }, + "sample_accessions": { + "type": "object", + "description": "One or more accession numbers from a standard archive.", + "additionalProperties" : false, + "properties": { + "biosd_sample": { + "description": "EBI biosample ID", + "type": "string" + }, + "ncbi_biosample": { + "description": "NCBI biosample ID", + "type": "string" + }, + "geo_sample": { + "description": "NCBI GEO sample accession", + "pattern": "^GSM.*$", + "type": "string" + }, + "ena_sample": { + "description": "European nucleotide archive sample ID", + "pattern": "^ERS.*$", + "type": "string" + } + } } - }, - "required": [ - "body_part", - "core", - "donor", - "id", - "name", - "organ", - "project_id" - ], - "title": "sample", - "type": "object" -} + }, + + "required": ["details", "id", "name", "project_id", "core"], + "additionalProperties": "False" +} \ No newline at end of file diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json new file mode 100644 index 000000000..cd743a295 --- /dev/null +++ b/json_schema/sample_from_organism.json @@ -0,0 +1,149 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", + "patternProperties": { + "^characteristics_.*$": { + "description": "FIelds that begin with sample.characteristics_ can contain any value, and the field name can be anything after the prefix", + "type": "string" + } + }, + "properties": { + "biosd_sample": { + "description": "EBI biosample ID", + "type": "string" + }, + "body_part": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "description": "A more detailed position within the organ where body came from." + }, + "cell_cycle": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here" + }, + "cell_line": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/cell_line.json", + "description": "Description of cell line if any that this came from." + }, + "core": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", + "description": "type and schema for this object" + }, + "culture_type": { + "description": "either \"primary culture,\" \"tissue\" or \"cell_line\"", + "enum": [ + "cell line", + "primary culture", + "tissue" + ] + }, + "disassociation_protocol": { + "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", + "pattern": "^P-....-.*$", + "type": "string" + }, + "donor": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/donor.json", + "description": "Information on the donors that the sample came from." + }, + "ena_sample": { + "description": "European nucleotide archive sample ID", + "pattern": "^ERS.*$", + "type": "string" + }, + "enrichment": { + "description": "How cells were enriched for specific type or to weed out common types after disassociation.", + "items": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/enrichment.json" + }, + "type": "array" + }, + "geo_sample": { + "description": "NCBI GEO sample accession", + "pattern": "^GSM.*$", + "type": "string" + }, + "id": { + "description": "A unique ID for this sample", + "type": "string" + }, + "name": { + "description": "A short descriptive name for sample. Should be enough to distinguish it from other samples in the project", + "type": "string" + }, + "ncbi_biosample": { + "description": "NCBI biosample ID", + "type": "string" + }, + "organ": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "description": "The organ that the sample came from. \"Blood\" and \"connective tissue\" count as organs." + }, + "preservation": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/preservation.json", + "description": "State of body_part at collection and how it was preserved after removal." + }, + "project_id": { + "description": "The id field of the project that this connects to", + "type": "string" + }, + "protocol_ids": { + "description": "Array of protocol IDs from project.protocols used for this sample.", + "items": { + "pattern": "^.*-....-.*$", + "type": "string" + }, + "type": "array" + }, + "submit_date": { + "description": "When project was first submitted to database.", + "pattern": "^2...-..-..$", + "type": "string" + }, + "submitter_id": { + "description": "ID of contact who first submitted project", + "type": "string" + }, + "supplementary_files": { + "description": "Sample level supplementary files.", + "items": { + "type": "string" + }, + "type": "array" + }, + "title": { + "description": "A descriptive phrase or sentence, ideally about 60 characters.", + "type": "string" + }, + "total_estimated_cells": { + "description": "Total estimated number of cells in sample. May be 1 for well based assays.", + "maximum": 1000000000.0, + "minimum": 0.1, + "type": "number" + }, + "update_date": { + "description": "When project was last updated", + "pattern": "^2...-..-..$", + "type": "string" + }, + "updater_id": { + "description": "ID of contact who last updated project", + "type": "string" + }, + "well": { + "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/well.json", + "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" + } + }, + "required": [ + "body_part", + "core", + "donor", + "id", + "name", + "organ", + "project_id" + ], + "title": "sample", + "type": "object" +} From 818ffe0971634755b645de409b604484c613ae28 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 11:32:33 +0100 Subject: [PATCH 002/128] Adding some basic infrastructure for #10 --- .travis.yml | 12 ++++++++++++ requirements.txt | 2 ++ src/schema_test_suite.py | 32 ++++++++++++++++++++++++++++++++ 3 files changed, 46 insertions(+) create mode 100644 .travis.yml create mode 100644 requirements.txt create mode 100644 src/schema_test_suite.py diff --git a/.travis.yml b/.travis.yml new file mode 100644 index 000000000..7543624f2 --- /dev/null +++ b/.travis.yml @@ -0,0 +1,12 @@ +language: python + +# python versions to be used for testing +python: + - "3.6" + +install: + - pip install -r requirements.txt + +script: + - cd src + - python test_schema.py diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 000000000..f9b29d598 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,2 @@ +jsonschema + diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py new file mode 100644 index 000000000..e6e7ee2da --- /dev/null +++ b/src/schema_test_suite.py @@ -0,0 +1,32 @@ +import json +from jsonschema import Draft4Validator, RefResolver, SchemaError +import warnings + +def get_json_from_file(filename): + f = open(filename, 'r') + return json.loads(f.read()) + +def get_validator(filename, base_uri = ''): + schema = get_json_from_file(filename) + try: + Draft4Validator.check_schema(schema) # Not clear what's wrong here. Works in notebook. + print("Schema %s is valid" % filename) + except SchemaError: + raise + if base_uri: + resolver = RefResolver(base_uri = base_uri, + referrer = filename) + else: + resolver = None + return Draft4Validator(schema = schema, + resolver = resolver) + +def validate(validator, instance): + if validator.is_valid(instance): + print("Passes") + return True + else: + es = validator.iter_errors(instance) + for e in es: + warnings.warn(str("\n".join([e.message, str(e.instance)]))) + return False From c9861951a6071bdde5d4b9f0b19d5c39d6bca036 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 11:38:07 +0100 Subject: [PATCH 003/128] * Changed all $ref to local ref (see #4) * Added sample_type so that donor becomes a subschema of sample (see #9) * Removed organoid and 'cell line' from donor.life_stage Fixes #13 --- json_schema/donor.json | 25 +++++++++++++------------ 1 file changed, 13 insertions(+), 12 deletions(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index 883499904..2db9bb045 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -1,9 +1,12 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "definitions": {}, "description": "donor schema generate by tagSchemaToJson from donor", "properties": { + "sample_type": { + "type": "array", + "enum": ["donor"] + }, "age": { "description": "Age in age_units. Expressed since birth. For embryos measured since fertilization.", "maximum": 150, @@ -23,7 +26,7 @@ "description": "term from https://www.ebi.ac.uk/ols/ontologies/ancestro", "type": "array", "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" } }, "body_mass_index": { @@ -34,21 +37,21 @@ }, "core": { "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" + "$ref": "core.json" }, "death": { "description": "Information about conditions of death (or info that donor was living at time of collection)", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/death.json" + "$ref": "death.json" }, "development_stage": { "description": "More detailed (especially for embryos) version of life_stage. Might be \"E9\" or \"P17\" for a mouse.", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" }, "disease": { "description": "Short description of disease status of individual.", "type": "array", "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" } }, "genotype": { @@ -76,10 +79,8 @@ "description": "describe_me_please", "enum": [ "adult", - "cell line", "child", "embryo", - "organoid", "postpartum" ] }, @@ -87,7 +88,7 @@ "description": "List of medications donor is on", "type": "array", "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" } }, "sex": { @@ -101,13 +102,13 @@ }, "species": { "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" }, "strain": { "description": "Mouse inbred strain. Example C57BL/6.", "type": "array", "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" } }, "submitted_id": { @@ -122,7 +123,7 @@ } }, "required": [ - "core", "species", "is_living" + "core", "species", "is_living", "sample_type" ], "title": "donor", "type": "object" From ebcf31efa25cf7d5eb57aa9abc9569f6bf419c55 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 11:43:02 +0100 Subject: [PATCH 004/128] * Changed all $ref to local ref (see #4) * Added sample_type property so that cell_line becomes a subschema of sample (see #9) --- json_schema/cell_line.json | 15 +++++++++------ 1 file changed, 9 insertions(+), 6 deletions(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 6bfd80e28..9acb966d8 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -1,9 +1,12 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "definitions": {}, "description": "Information about the cell line used in the sample", "properties": { + "sample_type": { + "type": "array", + "enum": ["cell line"] + }, "catalog_number": { "description": "the supplier catalogue number for the cell line", "type": "string" @@ -14,11 +17,11 @@ }, "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" }, "core": { "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" + "$ref": "core.json" }, "culture_protocol": { "description": "pointer to the culture protocol", @@ -36,7 +39,7 @@ }, "disease": { "description": "text describing disease association, preferable a disease found in EFO", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" }, "karyotype": { "description": "the karyotype of the cell line", @@ -44,7 +47,7 @@ }, "name": { "description": "what is the official name for the cell line?", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json" + "$ref": "ontology.json" }, "passage_number": { "description": "how many passages the cell line as been through", @@ -54,7 +57,7 @@ }, "publication": { "description": "what is the official name for the cell line?", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/publication.json" + "$ref": "publication.json" }, "cell_cycle": { "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", From fa30a96318b0366d79ad923d54c97fcec9d52ec1 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 12:23:37 +0100 Subject: [PATCH 005/128] * All $ref to local paths * Contents of sample.json now partitioned between sample and sample_from_organism - following #9 --- json_schema/sample.json | 29 ++++-- json_schema/sample_from_organism.json | 134 +++----------------------- 2 files changed, 37 insertions(+), 126 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index 8f79534dc..b375fd27f 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,7 +1,8 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "Information on a biosample." , + "additionalProperties": false, + "required": ["details", "id", "name", "project_id", "core"], + "description": "Information about a biosample." , "properties": { "core": { "$ref": "core.json" }, "id": { @@ -47,6 +48,23 @@ "description": "The id field of the project that this connects to", "type": "string" }, + "supplementary_files": { + "description": "Sample level supplementary files.", + "items": { + "type": "string" + }, + "type": "array" + }, + "total_estimated_cells": { + "description": "Total estimated number of cells in sample. May be 1 for well based assays.", + "maximum": 1000000000.0, + "minimum": 0.1, + "type": "number" + }, + "well": { + "$ref": "well.json", + "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" + }, "sample_accessions": { "type": "object", "description": "One or more accession numbers from a standard archive.", @@ -69,11 +87,8 @@ "description": "European nucleotide archive sample ID", "pattern": "^ERS.*$", "type": "string" - } + } } } - }, - - "required": ["details", "id", "name", "project_id", "core"], - "additionalProperties": "False" + } } \ No newline at end of file diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index cd743a295..ccfe02dcf 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -7,86 +7,26 @@ "description": "FIelds that begin with sample.characteristics_ can contain any value, and the field name can be anything after the prefix", "type": "string" } - }, + }, + "title": "sample from organism", + "type": "object", "properties": { - "biosd_sample": { - "description": "EBI biosample ID", - "type": "string" - }, + "sample_type": { + "type": "array", + "enum": ["sample from organism"] + }, "body_part": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "A more detailed position within the organ where body came from." - }, - "cell_cycle": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here" - }, - "cell_line": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/cell_line.json", - "description": "Description of cell line if any that this came from." - }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", - "description": "type and schema for this object" - }, - "culture_type": { - "description": "either \"primary culture,\" \"tissue\" or \"cell_line\"", - "enum": [ - "cell line", - "primary culture", - "tissue" - ] - }, - "disassociation_protocol": { - "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", - "pattern": "^P-....-.*$", - "type": "string" - }, - "donor": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/donor.json", - "description": "Information on the donors that the sample came from." - }, - "ena_sample": { - "description": "European nucleotide archive sample ID", - "pattern": "^ERS.*$", - "type": "string" - }, - "enrichment": { - "description": "How cells were enriched for specific type or to weed out common types after disassociation.", - "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/enrichment.json" - }, - "type": "array" - }, - "geo_sample": { - "description": "NCBI GEO sample accession", - "pattern": "^GSM.*$", - "type": "string" - }, - "id": { - "description": "A unique ID for this sample", - "type": "string" - }, - "name": { - "description": "A short descriptive name for sample. Should be enough to distinguish it from other samples in the project", - "type": "string" - }, - "ncbi_biosample": { - "description": "NCBI biosample ID", - "type": "string" - }, + "$ref": "ontology.json", + "description": "A more detailed position within the body than the term given in the organ field." + }, "organ": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "$ref": "ontology.json", "description": "The organ that the sample came from. \"Blood\" and \"connective tissue\" count as organs." }, "preservation": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/preservation.json", + "$ref": "preservation.json", "description": "State of body_part at collection and how it was preserved after removal." }, - "project_id": { - "description": "The id field of the project that this connects to", - "type": "string" - }, "protocol_ids": { "description": "Array of protocol IDs from project.protocols used for this sample.", "items": { @@ -94,56 +34,12 @@ "type": "string" }, "type": "array" - }, - "submit_date": { - "description": "When project was first submitted to database.", - "pattern": "^2...-..-..$", - "type": "string" - }, - "submitter_id": { - "description": "ID of contact who first submitted project", - "type": "string" - }, - "supplementary_files": { - "description": "Sample level supplementary files.", - "items": { - "type": "string" - }, - "type": "array" - }, - "title": { - "description": "A descriptive phrase or sentence, ideally about 60 characters.", - "type": "string" - }, - "total_estimated_cells": { - "description": "Total estimated number of cells in sample. May be 1 for well based assays.", - "maximum": 1000000000.0, - "minimum": 0.1, - "type": "number" - }, - "update_date": { - "description": "When project was last updated", - "pattern": "^2...-..-..$", - "type": "string" - }, - "updater_id": { - "description": "ID of contact who last updated project", - "type": "string" - }, - "well": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/well.json", - "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" } }, "required": [ + "sample_type", "body_part", "core", - "donor", - "id", - "name", - "organ", - "project_id" - ], - "title": "sample", - "type": "object" + "organ" + ] } From 970bcd1f75c4bf3efe0eb30456d5526f222ae53b Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 13:15:21 +0100 Subject: [PATCH 006/128] Adding travis build badge --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index 334e98825..452480529 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,6 @@ +[![Build Status](https://travis-ci.org/HumanCellAtlas/metadata-schema.svg?branch=master)](https://travis-ci.org/HumanCellAtlas/metadata-schema) + + # The Human Cell Atlas Metadata Schema This repo contains the HCA metadata metadata json schemas. From 8deb00d7c0756b647af4aaa68cb46e6bfad50f3c Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 13:17:08 +0100 Subject: [PATCH 007/128] Updating travis.yml to run simple schema test. --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 7543624f2..469671ac8 100644 --- a/.travis.yml +++ b/.travis.yml @@ -9,4 +9,4 @@ install: script: - cd src - - python test_schema.py + - python simple_test.py From 92cf20ebc4e0dfb986acf502050f7e14b8dab85d Mon Sep 17 00:00:00 2001 From: David Osumi-Sutherland Date: Mon, 16 Oct 2017 14:46:12 +0100 Subject: [PATCH 008/128] Update README.md Trivial changes to README to try to prompt travis run. --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 452480529..e26e91547 100644 --- a/README.md +++ b/README.md @@ -5,8 +5,8 @@ This repo contains the HCA metadata metadata json schemas. -The **design-principles** can be read in the [linked google-doc](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing) +The **design-principles** can be read in the [linked google-doc](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing). -How to contribute is described in [contributing.md](https://github.com/HumanCellAtlas/metadata-schema/blob/master/contributing.md) +How to contribute is described in [contributing.md](https://github.com/HumanCellAtlas/metadata-schema/blob/master/contributing.md). From d2f076930c4146f7f5275c1a383c39f1e45ddfb6 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 16 Oct 2017 15:08:22 +0100 Subject: [PATCH 009/128] First attempt at organoid schema. Needs to be fleshed out. --- json_schema/organoid.json | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 json_schema/organoid.json diff --git a/json_schema/organoid.json b/json_schema/organoid.json new file mode 100644 index 000000000..14fd9b91d --- /dev/null +++ b/json_schema/organoid.json @@ -0,0 +1,14 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A description of an organoid sample.", + "properties": { + "sample_type": { + "type": "array", + "enum": ["organoid"] + }, + "model for organ": { + "description": "Organ that this organoid is a model system for.", + "$ref": "ontlogy.json" + } + } +} \ No newline at end of file From 32bb3942e174f5a4820471223dd9c965e05a1542 Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 17 Oct 2017 13:57:26 +0100 Subject: [PATCH 010/128] Split out cell_suspension sample schema and derivation processes. #9 --- json_schema/cell_suspension.json | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 json_schema/cell_suspension.json diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json new file mode 100644 index 000000000..8a6f31dc1 --- /dev/null +++ b/json_schema/cell_suspension.json @@ -0,0 +1,25 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "", + "properties": { + "sample_type": { + "type": "string", + "enum": ["cell suspension"] + }, + "cell type": { + "description" : "cell types present in suspension", + "type": "array", + "items": { "$ref": "ontology.json" } + }, + "disassociation_protocol": { + "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", + "pattern": "^P-....-.*$", + "type": "string" + }, + "enrichment": { + "description": "How cells were enriched for specific type or to weed out common types after disassociation.", + "type": "array", + "items": { "$ref": "enrichment.json" } + } + } +} \ No newline at end of file From 7b83d6f8ffd71095992c7b97adf14af6cb460320 Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 17 Oct 2017 14:23:01 +0100 Subject: [PATCH 011/128] Added some doc to schema test functions --- src/schema_test_suite.py | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index e6e7ee2da..0708b2c6c 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -2,14 +2,23 @@ from jsonschema import Draft4Validator, RefResolver, SchemaError import warnings + def get_json_from_file(filename): f = open(filename, 'r') return json.loads(f.read()) def get_validator(filename, base_uri = ''): + """Load schema from JSON file; + Check whether it's a valid schema; + Return a Draft4Validator object. + Optionally specify a base URI for relative path + resolution of JSON pointers. This is especially useful + for local resolution via base_uri of form file://{some_path}/ + """ schema = get_json_from_file(filename) try: - Draft4Validator.check_schema(schema) # Not clear what's wrong here. Works in notebook. + # Check schema via class method call. + Draft4Validator.check_schema(schema) # IDE complaining but seems to work. print("Schema %s is valid" % filename) except SchemaError: raise @@ -22,6 +31,7 @@ def get_validator(filename, base_uri = ''): resolver = resolver) def validate(validator, instance): + """Validate an instance of a schema and report errors.""" if validator.is_valid(instance): print("Passes") return True From 87064d5ae12168de2df8f3c0954765cb3d607cfc Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 10:08:30 +0100 Subject: [PATCH 012/128] Simple test of schema validity --- src/simple_test.py | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 src/simple_test.py diff --git a/src/simple_test.py b/src/simple_test.py new file mode 100644 index 000000000..acc1215e6 --- /dev/null +++ b/src/simple_test.py @@ -0,0 +1,12 @@ +from schema_test_suite import get_validator +import glob + +# Simple first test - are json files in json_schema folder +# valid json schema docs? + +schemas = glob.glob('../json_schema/' +"[b-z]*.json") +for s in schemas: + print("Checking whether %s is a valid json schema" % s) + get_validator(s) + +# Specific schema tests to follow . \ No newline at end of file From 80e300b60db57bf52a3bedd0b20de6659bc7d0bc Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 10:31:55 +0100 Subject: [PATCH 013/128] Fixed minor issue with scientific notation in imaging.json that made json invalid. --- json_schema/imaging.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/imaging.json b/json_schema/imaging.json index ea960fcd7..75a16835e 100644 --- a/json_schema/imaging.json +++ b/json_schema/imaging.json @@ -14,7 +14,7 @@ "exposure_time": { "description": "Exposure time as a floating point number in units of seconds", "maximum": 1000, - "minimum": 1e-09, + "minimum": 1e-9, "type": "number" }, "field_counts": { From 46a2625695ff34b1f9d84cbd8f550e11487ce9eb Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 14:19:27 +0100 Subject: [PATCH 014/128] Fixes #16. Note - where required list had no remaining entries it was deleted. --- json_schema/assay.json | 7 +------ json_schema/barcode.json | 10 +++------- json_schema/cell_line.json | 12 ++++-------- json_schema/contact.json | 7 +------ json_schema/core.json | 19 +++---------------- json_schema/death.json | 7 +------ json_schema/donor.json | 18 +++++++----------- json_schema/enrichment.json | 4 ---- json_schema/imaging.json | 6 +----- json_schema/organoid.json | 2 +- json_schema/preservation.json | 6 ------ json_schema/project.json | 4 ++-- json_schema/protocol.json | 2 +- json_schema/publication.json | 11 ++--------- json_schema/rna.json | 5 ----- json_schema/sample.json | 23 +++++++++++++---------- json_schema/sample_from_organism.json | 3 +-- json_schema/seq.json | 4 ---- json_schema/single_cell.json | 7 +------ json_schema/well.json | 9 +-------- 20 files changed, 43 insertions(+), 123 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index d9725368b..a200b20d7 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -3,11 +3,7 @@ "additionalProperties": false, "definitions": {}, "description": "An assay contains Information relevant to how RNA expression levels were assayed or otherwise the sample was converted into digital information", - "properties": { - "core": { - "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, + "properties": { "id": { "description": "unique id for this assay", "type": "string" @@ -30,7 +26,6 @@ } }, "required": [ - "core", "id", "sample_id" ], diff --git a/json_schema/barcode.json b/json_schema/barcode.json index 926b5a3dc..57af0cb09 100644 --- a/json_schema/barcode.json +++ b/json_schema/barcode.json @@ -23,15 +23,11 @@ "i1" ] }, - "white_list_file": { - "description": "Name of file containing legitimate bar code sequences. Unused for randomly generated barcodes." + "white_list_file": { + "description": "Name of file containing legitimate bar code sequences. Unused for randomly generated barcodes." + } }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - } - }, "required": [ - "core", "offset", "size", "read" diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 9acb966d8..3cd8773c2 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -4,7 +4,7 @@ "description": "Information about the cell line used in the sample", "properties": { "sample_type": { - "type": "array", + "type": "string", "enum": ["cell line"] }, "catalog_number": { @@ -18,11 +18,7 @@ "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", "$ref": "ontology.json" - }, - "core": { - "description": "type and schema for this object", - "$ref": "core.json" - }, + }, "culture_protocol": { "description": "pointer to the culture protocol", "pattern": "^P-....-.*$", @@ -60,8 +56,8 @@ "$ref": "publication.json" }, "cell_cycle": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", - "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here" + "$ref": "ontology.json", + "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." } }, "title": "cell_line", diff --git a/json_schema/contact.json b/json_schema/contact.json index da20fa5df..6dd100fac 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -12,10 +12,6 @@ "description": "City name. See also contact.address", "type": "string" }, - "core": { - "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, "country": { "description": "Country (USA or UK for those countries, otherwise spelled out)", "enum": [ @@ -112,8 +108,7 @@ } }, "required": [ - "core", - "name" + "name" ], "title": "contact", "type": "object" diff --git a/json_schema/core.json b/json_schema/core.json index 43ba5e26f..f2cdb8a9d 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -13,27 +13,14 @@ "type": "string" }, "type": { - "description": "A name for the type of object/module. By convention also the file name (without dir or extension) of json schema or entity level metadata file", + "description": "The name of the core metadata entity type.", "enum": [ "assay", - "barcode", - "cell_line", - "contact", - "core", - "death", - "donor", - "enrichment", - "imaging", - "lane", - "preservation", "project", "protocol", - "publication", - "rna", "sample", - "seq", - "single_cell", - "well" + "file", + "analysis" ] } }, diff --git a/json_schema/death.json b/json_schema/death.json index c6cf80bf7..7be2a4dbd 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -14,11 +14,7 @@ "no", "yes" ] - }, - "core": { - "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, + }, "days_on_ventilator": { "description": "Days on ventilator before dying", "maximum": 10000, @@ -38,7 +34,6 @@ } }, "required": [ - "core", "cause_of_death" ], "title": "death", diff --git a/json_schema/donor.json b/json_schema/donor.json index 2db9bb045..3d629cb3f 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -4,7 +4,7 @@ "description": "donor schema generate by tagSchemaToJson from donor", "properties": { "sample_type": { - "type": "array", + "type": "string", "enum": ["donor"] }, "age": { @@ -35,10 +35,6 @@ "minimum": 5, "type": "number" }, - "core": { - "description": "type and schema for this object", - "$ref": "core.json" - }, "death": { "description": "Information about conditions of death (or info that donor was living at time of collection)", "$ref": "death.json" @@ -85,11 +81,11 @@ ] }, "medication": { - "description": "List of medications donor is on", - "type": "array", - "items": { - "$ref": "ontology.json" - } + "description": "List of medications donor is on", + "type": "array", + "items": { + "$ref": "ontology.json" + } }, "sex": { "description": "Sex of donor. Either 'male' 'female' 'mixed' or 'unknown'", @@ -123,7 +119,7 @@ } }, "required": [ - "core", "species", "is_living", "sample_type" + "species", "is_living", "sample_type" ], "title": "donor", "type": "object" diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index ca9851c73..58f73ef77 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -4,10 +4,6 @@ "items": { "additionalProperties": false, "properties": { - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", - "description": "type and schema for this object" - }, "markers": { "description": "Text in the format of space delimited list of markers with +/-. Example: \"CD4+ CD8-\"", "type": "string" diff --git a/json_schema/imaging.json b/json_schema/imaging.json index 75a16835e..f95ebf4fd 100644 --- a/json_schema/imaging.json +++ b/json_schema/imaging.json @@ -3,10 +3,7 @@ "additionalProperties": false, "definitions": {}, "description": "imaging schema generate by tagSchemaToJson from imaging", - "properties": { - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, + "properties": { "embedding": { "description": "Description of embedding conditions", "type": "string" @@ -55,7 +52,6 @@ } }, "required": [ - "core", "field_counts", "field_resolution", "probes" diff --git a/json_schema/organoid.json b/json_schema/organoid.json index 14fd9b91d..6ac0c32c3 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -3,7 +3,7 @@ "description": "A description of an organoid sample.", "properties": { "sample_type": { - "type": "array", + "type": "string", "enum": ["organoid"] }, "model for organ": { diff --git a/json_schema/preservation.json b/json_schema/preservation.json index e8a196e6e..357d90a31 100644 --- a/json_schema/preservation.json +++ b/json_schema/preservation.json @@ -12,9 +12,6 @@ "moderate" ] }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, "gross_description": { "description": "Color, size and other aspects of specimen as visible to naked eye", "type": "string" @@ -62,9 +59,6 @@ "type": "string" } }, - "required": [ - "core" - ], "title": "preservation", "type": "object" } diff --git a/json_schema/project.json b/json_schema/project.json index 5a31fbd30..9786de776 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -17,12 +17,12 @@ "contributors": { "description": "List of scientists contributing to project", "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/contact.json" + "$ref": "contact.json" }, "type": "array" }, "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", + "$ref": "core.json", "description": "type and schema for this object" }, "ddjb_trace": { diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 87b132d86..f00821c4d 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -10,7 +10,7 @@ }, "core": { "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" + "$ref": "core.json" }, "description": { "description": "a text based desciption about the protocol", diff --git a/json_schema/publication.json b/json_schema/publication.json index 571f3747c..0fada0681 100644 --- a/json_schema/publication.json +++ b/json_schema/publication.json @@ -9,11 +9,7 @@ "type": "string" }, "type": "array" - }, - "core": { - "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, + }, "doi": { "description": "Publication digital object identifier. Example \"10.1016/j.cell.2016.07.054\"", "type": "string" @@ -30,10 +26,7 @@ "description": "URL, preferably not behind a paywall, for publication", "type": "string" } - }, - "required": [ - "core" - ], + }, "title": "publication", "type": "object" } diff --git a/json_schema/rna.json b/json_schema/rna.json index ce5a9078f..ca5ae1824 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -4,10 +4,6 @@ "definitions": {}, "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", "properties": { - "core": { - "description": "type and schema for this object", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, "end_bias": { "description": "\"3' bias\" or \"5' bias\" or \"3' end\" or \"5' end\" or \"none\"", "enum": [ @@ -65,7 +61,6 @@ } }, "required": [ - "core", "library_construction" ], "title": "rna", diff --git a/json_schema/sample.json b/json_schema/sample.json index b375fd27f..4280a1c6a 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,17 +1,24 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "required": ["details", "id", "name", "project_id", "core"], + "required": ["details", "core"], "description": "Information about a biosample." , "properties": { - "core": { "$ref": "core.json" }, + "core": { + "$ref": "core.json", + "description": "type and schema for this object" + }, "id": { "description": "A unique ID for this sample", "type": "string" - }, + }, "name": { "description": "A short descriptive name for sample. Should be enough to distinguish it from other samples in the project", "type": "string" + }, + "title": { + "description": "A descriptive phrase or sentence describing the sample , ideally about 60 characters.", + "type": "string" }, "submit_date": { "description": "When project was first submitted to database.", @@ -22,10 +29,6 @@ "description": "ID of contact who first submitted project", "type": "string" }, - "title": { - "description": "A descriptive phrase or sentence, ideally about 60 characters.", - "type": "string" - }, "update_date": { "description": "When project was last updated", "pattern": "^2...-..-..$", @@ -36,9 +39,9 @@ "type": "string" }, "details": { - "oneOf": [ - { "$ref": "donor.jon" }, - { "$ref": "sample_from_organism.jsomn" }, + "anyOf": [ + { "$ref": "donor.json" }, + { "$ref": "sample_from_organism.json" }, { "$ref": "cell_line.json" }, { "$ref": "cell_suspension.json" }, { "$ref": "organoid.json" } diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index ccfe02dcf..80859ce58 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -12,7 +12,7 @@ "type": "object", "properties": { "sample_type": { - "type": "array", + "type": "string", "enum": ["sample from organism"] }, "body_part": { @@ -39,7 +39,6 @@ "required": [ "sample_type", "body_part", - "core", "organ" ] } diff --git a/json_schema/seq.json b/json_schema/seq.json index 0c9662cf1..a44d496ee 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -39,9 +39,6 @@ }, "description": "Information about how a sample was sequenced.", "properties": { - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" - }, "ena_experiment": { "description": "European Nucleotide Archive experiment accession", "pattern": "^ERX.*$", @@ -122,7 +119,6 @@ } }, "required": [ - "core", "instrument_model", "instrument_platform", "lanes", diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 32bfb6dd4..18c075015 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -1,7 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "definitions": {}, "description": "Contains information on single cell aspects of an assay.", "properties": { "barcode": { @@ -19,14 +18,10 @@ "mouth pipette", "bulk" ] - }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json" } }, "required": [ - "cell_handling", - "core" + "cell_handling" ], "title": "single_cell", "type": "object" diff --git a/json_schema/well.json b/json_schema/well.json index 4cd67c895..e7d2d9104 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -11,10 +11,6 @@ "description": "well column in plate", "type": "string" }, - "core": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/core.json", - "description": "type and schema for this object" - }, "name": { "description": "A name for the well, should be unique for the plate", "type": "string" @@ -41,10 +37,7 @@ "description": "well row in plate", "type": "string" } - }, - "required": [ - "core" - ], + }, "title": "well", "type": "object" } From c51d202b17c99e81b2807050244cc493cc81777f Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 14:29:39 +0100 Subject: [PATCH 015/128] Fixes #17 --- json_schema/core.json | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/json_schema/core.json b/json_schema/core.json index f2cdb8a9d..8104608ca 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -25,9 +25,7 @@ } }, "required": [ - "type", - "schema_version", - "schema_url" + "type" ], "title": "core", "type": "object" From ee63aae014f3ac91bbc49e8aa6fec06bdf3653d1 Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 14:49:25 +0100 Subject: [PATCH 016/128] Fixes #21. Also removed 'name' and 'title' from sample.json as duplicate/too similar to new core properties. --- json_schema/core.json | 30 ++++++++++++++++++++---------- json_schema/sample.json | 10 +--------- 2 files changed, 21 insertions(+), 19 deletions(-) diff --git a/json_schema/core.json b/json_schema/core.json index 8104608ca..867f4046b 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -15,18 +15,28 @@ "type": { "description": "The name of the core metadata entity type.", "enum": [ - "assay", - "project", - "protocol", - "sample", - "file", - "analysis" + "assay", + "project", + "protocol", + "sample", + "file", + "analysis" ] + }, + "name": { + "description": "A short descriptive name for the entity (e.g. sample, assay, protocol, file, analysis). Should be enough to distinguish it from other samples in the project.", + "type": "string" + }, + "comment": { + "description": "A free text commment capturing any relevant information not captured by other fields.", + "type": "string" + }, + "description": { + "description": "A general description of the item being submitted (e.g. sample, assay, protocol, file, analysis).", + "type": "string" } - }, + }, "required": [ "type" - ], - "title": "core", - "type": "object" + ] } diff --git a/json_schema/sample.json b/json_schema/sample.json index 4280a1c6a..651111115 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -4,7 +4,7 @@ "required": ["details", "core"], "description": "Information about a biosample." , "properties": { - "core": { + "core": { "$ref": "core.json", "description": "type and schema for this object" }, @@ -12,14 +12,6 @@ "description": "A unique ID for this sample", "type": "string" }, - "name": { - "description": "A short descriptive name for sample. Should be enough to distinguish it from other samples in the project", - "type": "string" - }, - "title": { - "description": "A descriptive phrase or sentence describing the sample , ideally about 60 characters.", - "type": "string" - }, "submit_date": { "description": "When project was first submitted to database.", "pattern": "^2...-..-..$", From f7e16c8ccf3eda167b420c684cfb68ccd095367f Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 15:19:55 +0100 Subject: [PATCH 017/128] Added ingest schema json. Removed equivalent fields from sample.json. --- json_schema/ingest.json | 40 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 json_schema/ingest.json diff --git a/json_schema/ingest.json b/json_schema/ingest.json new file mode 100644 index 000000000..0641fd123 --- /dev/null +++ b/json_schema/ingest.json @@ -0,0 +1,40 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "Information about a biosample." , + "properties": { + "submissionDate": { + "description": "When project was first submitted to database.", + "format": "date-time", + "type": "string" + }, + "submitter_id": { + "description": "ID of contact who first submitted project", + "type": "string" + }, + "update_date": { + "description": "When project was last updated", + "pattern": "^2...-..-..$", + "type": "string" + }, + "updater_id": { + "description": "ID of contact who last updated project", + "type": "string" + }, + "uuid": { + "description": "Identifier for document.", + "comment": "This structure supports the current ingest API. It may change in future.", + "type": "object", + "properties": { + "uuid": { + "type": "string", + "pattern": ".{8}-.{4}-.{4}-.{4}-.{12}" + } + } + }, + "accession": { + "description": "A unique accession for this entity, provided by the broker.", + "type": "string" + } + } +} \ No newline at end of file From 67bb7b1cf4bcb04d5835dc7f3a15be46ed57f4d6 Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 15:22:00 +0100 Subject: [PATCH 018/128] Fixes #22 --- json_schema/sample.json | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index 651111115..4563de7e6 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -12,24 +12,6 @@ "description": "A unique ID for this sample", "type": "string" }, - "submit_date": { - "description": "When project was first submitted to database.", - "pattern": "^2...-..-..$", - "type": "string" - }, - "submitter_id": { - "description": "ID of contact who first submitted project", - "type": "string" - }, - "update_date": { - "description": "When project was last updated", - "pattern": "^2...-..-..$", - "type": "string" - }, - "updater_id": { - "description": "ID of contact who last updated project", - "type": "string" - }, "details": { "anyOf": [ { "$ref": "donor.json" }, From ec9f1d2f1977ba5741f7b52aeaf389fd8f9aa4c2 Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 18 Oct 2017 15:25:14 +0100 Subject: [PATCH 019/128] Removed ingest spec fields from project.json #22 --- json_schema/project.json | 33 ++------------------------------- 1 file changed, 2 insertions(+), 31 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index 9786de776..89b0ad90c 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -29,11 +29,7 @@ "description": "Japanese trace archive project accession.", "pattern": "^ERP.*$", "type": "string" - }, - "description": { - "description": "A paragraph or so description of the the project", - "type": "string" - }, + }, "experimental_design": { "items": { "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", @@ -88,43 +84,18 @@ "pattern": "^SRP.*$", "type": "string" }, - "submit_date": { - "description": "When project was first submitted to database.", - "pattern": "^2...-..-..$", - "type": "string" - }, - "submitter": { - "description": "Contact who first submitted project", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/contact.json" - }, "supplementary_files": { "description": "Project level supplementary files such as experimental design documents, lab spreadsheets, manuscripts in preparation.", "items": { "type": "string" }, "type": "array" - }, - "title": { - "description": "A sentence long or so title for the project", - "type": "string" - }, - "update_date": { - "description": "When project was last updated", - "pattern": "^2...-..-..$", - "type": "string" - }, - "updater": { - "description": "Contact who last updated project", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/contact.json" } }, "required": [ "core", "contributors", - "description", - "id", - "submitter", - "title" + "id", ], "title": "project", "type": "object" From 4649c9082fb2689087031f2f4f3bc97ae6f7b45e Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Wed, 18 Oct 2017 16:10:56 +0100 Subject: [PATCH 020/128] Added user_supplied_identifer to core.json #21 --- json_schema/core.json | 4 ++++ json_schema/ingest.json | 1 + json_schema/sample.json | 2 +- 3 files changed, 6 insertions(+), 1 deletion(-) diff --git a/json_schema/core.json b/json_schema/core.json index 867f4046b..248571130 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -23,6 +23,10 @@ "analysis" ] }, + "user_supplied_id":{ + "description": "A local identifier for the entity (e.g. sample, assay, protocol, file, analysis).", + "type": "string" + }, "name": { "description": "A short descriptive name for the entity (e.g. sample, assay, protocol, file, analysis). Should be enough to distinguish it from other samples in the project.", "type": "string" diff --git a/json_schema/ingest.json b/json_schema/ingest.json index 0641fd123..7cb4e3509 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -36,5 +36,6 @@ "description": "A unique accession for this entity, provided by the broker.", "type": "string" } + } } \ No newline at end of file diff --git a/json_schema/sample.json b/json_schema/sample.json index 4563de7e6..08d6361c5 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -22,7 +22,7 @@ ] }, "project_id": { - "description": "The id field of the project that this connects to", + "description": "The id field of the project that this connects to", "type": "string" }, "supplementary_files": { From dd2c9756bb285db3daadc9738b0fe7e491fa672c Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 19 Oct 2017 17:00:20 +0100 Subject: [PATCH 021/128] Changed sample subschema choice back to oneOf (from anyOf). --- json_schema/sample.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index 4563de7e6..9dd59e578 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -13,7 +13,7 @@ "type": "string" }, "details": { - "anyOf": [ + "oneOf": [ { "$ref": "donor.json" }, { "$ref": "sample_from_organism.json" }, { "$ref": "cell_line.json" }, From d862f76e80b547a6eaba8d56970ae83c8b22188f Mon Sep 17 00:00:00 2001 From: daniwelter Date: Thu, 19 Oct 2017 17:07:28 +0100 Subject: [PATCH 022/128] Update project.json Fixed an error in the json --- json_schema/project.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/project.json b/json_schema/project.json index 89b0ad90c..78dda1a86 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -95,7 +95,7 @@ "required": [ "core", "contributors", - "id", + "id" ], "title": "project", "type": "object" From 10f071636399a8caaac111f0e7dc6351183f994f Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Thu, 19 Oct 2017 17:07:57 +0100 Subject: [PATCH 023/128] Started work on the new per-component ontology json structure --- json_schema/assay.json | 6 +++--- .../ontology_json/body_part_ontology.json | 20 +++++++++++++++++++ json_schema/project.json | 8 ++++---- json_schema/protocol.json | 2 +- json_schema/seq.json | 2 +- json_schema/single_cell.json | 2 +- json_schema/well.json | 2 +- 7 files changed, 31 insertions(+), 11 deletions(-) create mode 100644 json_schema/ontology_json/body_part_ontology.json diff --git a/json_schema/assay.json b/json_schema/assay.json index a200b20d7..09bbaee62 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -14,15 +14,15 @@ }, "rna": { "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/rna.json" + "$ref": "rna.json" }, "seq": { "description": "Information about how a sample was sequenced.", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/seq.json" + "$ref": "seq.json" }, "single_cell": { "description": "Contains information on single cell aspects of an assay.", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/single_cell.json" + "$ref": "single_cell.json" } }, "required": [ diff --git a/json_schema/ontology_json/body_part_ontology.json b/json_schema/ontology_json/body_part_ontology.json new file mode 100644 index 000000000..dc1b40daa --- /dev/null +++ b/json_schema/ontology_json/body_part_ontology.json @@ -0,0 +1,20 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "A term that may be associated with an ontology term", + "properties": { + "text": { + "description": "The text for the term as the user provides it.", + "type": "string" + }, + "ontology": { + "description": "An optional ontology reference in format where prefix_ indicates which ontology", + "type": "string" + } + }, + "required": [ + "text" + ], + "title": "ontology", + "type": "object" +} diff --git a/json_schema/project.json b/json_schema/project.json index 89b0ad90c..803d9c1d2 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -32,7 +32,7 @@ }, "experimental_design": { "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "$ref": "ontology.json", "description": "A short description of overall experiment type, such as \"single cell RNA sequencing.\"" }, "type": "array" @@ -60,14 +60,14 @@ }, "protocols": { "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/protocol.json", + "$ref": "protocol.json", "description": "An array of protocol modules. Assay and project protocols reference this." }, "type": "array" }, "publications": { "items": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/publication.json", + "$ref": "publication.json", "description": "An array of publication modules." }, "type": "array" @@ -95,7 +95,7 @@ "required": [ "core", "contributors", - "id", + "id" ], "title": "project", "type": "object" diff --git a/json_schema/protocol.json b/json_schema/protocol.json index f00821c4d..570a58f2b 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -40,7 +40,7 @@ "type": "string" }, "type": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "$ref": "ontology.json", "description": "Type of protocol, ideally an EFO term" }, "update_date": { diff --git a/json_schema/seq.json b/json_schema/seq.json index a44d496ee..797e7fa56 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -115,7 +115,7 @@ }, "umi_barcode": { "description": "Information about unique molecular identifier barcode", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/barcode.json" + "$ref": "barcode.json" } }, "required": [ diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 18c075015..017aafead 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -5,7 +5,7 @@ "properties": { "barcode": { "description": "Information about cell identifier barcode", - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/barcode.json" + "$ref": "barcode.json" }, "cell_handling": { "description": "How cells are separated. FACS, drop-seq, tenX_v2, Fluidigm C1, etc", diff --git a/json_schema/well.json b/json_schema/well.json index e7d2d9104..b8f7fac29 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -4,7 +4,7 @@ "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { "cell_type": { - "$ref": "http://hgwdev.soe.ucsc.edu/~kent/hca/schema/ontology.json", + "$ref": "ontology.json", "description": "the cell type which submitter thinks is in the well" }, "col": { From f1c65a33dc0276ba01034d788943dbb1d0509b72 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 20 Oct 2017 14:46:38 +0100 Subject: [PATCH 024/128] Correct json issues in enrichment.json #24 --- json_schema/enrichment.json | 71 ++++++++++++++++++------------------- 1 file changed, 34 insertions(+), 37 deletions(-) diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index 58f73ef77..548c44a29 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -1,44 +1,41 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "description": "enrichment schema generate by tagSchemaToJson from enrichment", - "items": { - "additionalProperties": false, - "properties": { - "markers": { - "description": "Text in the format of space delimited list of markers with +/-. Example: \"CD4+ CD8-\"", + "additionalProperties": false, + "properties": { + "markers": { + "description": "Text in the format of space delimited list of markers with +/-. Example: \"CD4+ CD8-\"", + "type": "string" + }, + "protocol": { + "description": "Refers to an enrichment protocol", + "items": { + "pattern": "^P-....-.*$", "type": "string" - }, - "protocol": { - "description": "Refers to an enrichment protocol", - "items": { - "pattern": "^P-....-.*$", - "type": "string" - }, - "type": "array" - }, - "size_max": { - "description": "Maximum size passing selection in microns", - "maximum": 10000, - "minimum": 0.01, - "type": "number" - }, - "size_min": { - "description": "Minimum size passing selection in microns", - "maximum": 10000, - "minimum": 0.01, - "type": "number" - }, - "type": { - "description": "How enrichment was achieved. MACS, FACS, filter, etc", - "enum": [ - "FACS", - "MACS", - "Ficoll gradient" - ] - } - }, - "type": "object" - }, + }, + "type": "array" + }, + "size_max": { + "description": "Maximum size passing selection in microns", + "maximum": 10000, + "minimum": 0.01, + "type": "number" + }, + "size_min": { + "description": "Minimum size passing selection in microns", + "maximum": 10000, + "minimum": 0.01, + "type": "number" + }, + "type": { + "description": "How enrichment was achieved. MACS, FACS, filter, etc", + "enum": [ + "FACS", + "MACS", + "Ficoll gradient" + ] + } + }, "required": [ "type" ], From 5acaeba0a5b52e623673fa2cc75cc43977d7d4b4 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 20 Oct 2017 15:02:31 +0100 Subject: [PATCH 025/128] Added further ontology-specific json schemas #19 --- json_schema/cell_line.json | 4 ++-- json_schema/cell_suspension.json | 2 +- json_schema/donor.json | 2 +- .../ontology_json/body_part_ontology.json | 2 +- .../ontology_json/cell_type_ontology.json | 20 +++++++++++++++++++ .../ontology_json/disease_ontology.json | 20 +++++++++++++++++++ json_schema/sample_from_organism.json | 2 +- json_schema/well.json | 2 +- 8 files changed, 47 insertions(+), 7 deletions(-) create mode 100644 json_schema/ontology_json/cell_type_ontology.json create mode 100644 json_schema/ontology_json/disease_ontology.json diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 014f0b49a..2166d41df 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -17,7 +17,7 @@ }, "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", - "$ref": "ontology.json" + "$ref": "cell_type_ontology.json" }, "culture_protocol": { "description": "pointer to the culture protocol", @@ -35,7 +35,7 @@ }, "disease": { "description": "text describing disease association, preferable a disease found in EFO", - "$ref": "ontology.json" + "$ref": "disease_ontology.json" }, "karyotype": { "description": "the karyotype of the cell line", diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index f10562af9..931538353 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -9,7 +9,7 @@ "cell_type": { "description" : "cell types present in suspension", "type": "array", - "items": {"$ref": "ontology.json" } + "items": {"$ref": "cell_type_ontology.json" } }, "disassociation_protocol": { "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", diff --git a/json_schema/donor.json b/json_schema/donor.json index f5e15fa98..7af2a75b8 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -47,7 +47,7 @@ "description": "Short description of disease status of individual.", "type": "array", "items": { - "$ref": "ontology.json" + "$ref": "disease_ontology.json" } }, "genotype": { diff --git a/json_schema/ontology_json/body_part_ontology.json b/json_schema/ontology_json/body_part_ontology.json index dc1b40daa..e59112045 100644 --- a/json_schema/ontology_json/body_part_ontology.json +++ b/json_schema/ontology_json/body_part_ontology.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "A term that may be associated with an ontology term", + "description": "A term that may be associated with an anatomy-related ontology term", "properties": { "text": { "description": "The text for the term as the user provides it.", diff --git a/json_schema/ontology_json/cell_type_ontology.json b/json_schema/ontology_json/cell_type_ontology.json new file mode 100644 index 000000000..93c41b195 --- /dev/null +++ b/json_schema/ontology_json/cell_type_ontology.json @@ -0,0 +1,20 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "A term that may be associated with a cell type-related ontology term", + "properties": { + "text": { + "description": "The text for the term as the user provides it.", + "type": "string" + }, + "ontology": { + "description": "An optional ontology reference in format where prefix_ indicates which ontology", + "type": "string" + } + }, + "required": [ + "text" + ], + "title": "cell_type_ontology", + "type": "object" +} \ No newline at end of file diff --git a/json_schema/ontology_json/disease_ontology.json b/json_schema/ontology_json/disease_ontology.json new file mode 100644 index 000000000..fd974576e --- /dev/null +++ b/json_schema/ontology_json/disease_ontology.json @@ -0,0 +1,20 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "A term that may be associated with a disease-related ontology term", + "properties": { + "text": { + "description": "The text for the term as the user provides it.", + "type": "string" + }, + "ontology": { + "description": "An optional ontology reference in format where prefix_ indicates which ontology", + "type": "string" + } + }, + "required": [ + "text" + ], + "title": "disease_ontology", + "type": "object" +} \ No newline at end of file diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index 80859ce58..417542c6e 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -16,7 +16,7 @@ "enum": ["sample from organism"] }, "body_part": { - "$ref": "ontology.json", + "$ref": "body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, "organ": { diff --git a/json_schema/well.json b/json_schema/well.json index b8f7fac29..07dca615b 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -4,7 +4,7 @@ "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { "cell_type": { - "$ref": "ontology.json", + "$ref": "cell_type_ontology.json", "description": "the cell type which submitter thinks is in the well" }, "col": { From dead42494d766c241f1b22dbc613e477b74771f2 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 20 Oct 2017 15:56:51 +0100 Subject: [PATCH 026/128] Minor typo fix; testing Eclipse integration --- README.md | 4 ++-- contributing.md | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e26e91547..674d0aee4 100644 --- a/README.md +++ b/README.md @@ -3,9 +3,9 @@ # The Human Cell Atlas Metadata Schema -This repo contains the HCA metadata metadata json schemas. +This repo contains the HCA metadata JSON schemas. -The **design-principles** can be read in the [linked google-doc](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing). +The **design-principles** can be read in the [linked Google Doc](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing). How to contribute is described in [contributing.md](https://github.com/HumanCellAtlas/metadata-schema/blob/master/contributing.md). diff --git a/contributing.md b/contributing.md index dbdca4100..d412e43bf 100644 --- a/contributing.md +++ b/contributing.md @@ -2,4 +2,4 @@ This file is a place holder for the update process procedure. -You can read the work in progress in [HCA metadata lifecycle and versioning](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing) +You can read the work in progress in [HCA metadata lifecycle and versioning](https://docs.google.com/document/d/1eUVpYDLu2AxmxRw2ZUMM-jpKNxQudJbznNyNRp35nLc/edit?usp=sharing). From 25448c8a1bb195dc45ab2e9cebe445894897fe39 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 20 Oct 2017 16:59:57 +0100 Subject: [PATCH 027/128] More formatting fix #25 --- json_schema/assay.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index 09bbaee62..8d17c9ae2 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -13,21 +13,21 @@ "type": "string" }, "rna": { - "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", + "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", "$ref": "rna.json" }, "seq": { - "description": "Information about how a sample was sequenced.", + "description": "Information about how a sample was sequenced.", "$ref": "seq.json" }, "single_cell": { - "description": "Contains information on single cell aspects of an assay.", + "description": "Contains information on single cell aspects of an assay.", "$ref": "single_cell.json" } }, "required": [ - "id", - "sample_id" + "id", + "sample_id" ], "title": "assay", "type": "object" From 9a4d7884f16e7f424ec200e849dfb7f8359ec869 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 20 Oct 2017 17:00:47 +0100 Subject: [PATCH 028/128] More formatting fix #25 --- json_schema/assay.json | 4 ++-- json_schema/project.json | 6 +++--- json_schema/sample_from_organism.json | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index 8d17c9ae2..25b738cc4 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -26,8 +26,8 @@ } }, "required": [ - "id", - "sample_id" + "id", + "sample_id" ], "title": "assay", "type": "object" diff --git a/json_schema/project.json b/json_schema/project.json index 4d6d360e0..c5f557863 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -93,9 +93,9 @@ } }, "required": [ - "core", - "contributors", - "id" + "core", + "contributors", + "id" ], "title": "project", "type": "object" diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index 417542c6e..8b9b53069 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -37,8 +37,8 @@ } }, "required": [ - "sample_type", - "body_part", - "organ" + "sample_type", + "body_part", + "organ" ] } From 6c2fdf6d37a8327e425b346999b5323d2ec8e5a6 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 23 Oct 2017 16:39:15 +0100 Subject: [PATCH 029/128] Updated schema checker to report subschema errors. Could probably be improved further. --- src/schema_test_suite.py | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 0708b2c6c..2facf6f92 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -37,6 +37,16 @@ def validate(validator, instance): return True else: es = validator.iter_errors(instance) - for e in es: - warnings.warn(str("\n".join([e.message, str(e.instance)]))) + recurse_through_errors(es) return False + +def recurse_through_errors(es): + """Recurse through errors posting message + and schema path until context is empty""" + # Assuming blank context is a sufficient escape clause here. + for e in es: + warnings.warn("\t".join([e.message, + str(e.absolute_schema_path)]) + "\n") + if e.context: + recurse_through_errors(e.context) + From 19693dbb21b32296f2b6026d9826d40b2fe3a49c Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 12:51:59 +0100 Subject: [PATCH 030/128] Remove project_id from sample.json as per #20 --- json_schema/sample.json | 4 ---- 1 file changed, 4 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index 1165e0863..ceaddd8d6 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -21,10 +21,6 @@ { "$ref": "organoid.json" } ] }, - "project_id": { - "description": "The id field of the project that this connects to", - "type": "string" - }, "supplementary_files": { "description": "Sample level supplementary files.", "items": { From 7c3a6f4d000dc9abfc1c322920e5b0d7b2b6ca02 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 13:26:55 +0100 Subject: [PATCH 031/128] Email now required field on contact.json as per #27 --- json_schema/contact.json | 3 ++- json_schema/ingest.json | 11 +++++++---- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/json_schema/contact.json b/json_schema/contact.json index 6dd100fac..77aeb1fad 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -108,7 +108,8 @@ } }, "required": [ - "name" + "name", + "email" ], "title": "contact", "type": "object" diff --git a/json_schema/ingest.json b/json_schema/ingest.json index 7cb4e3509..dda613c5c 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "Information about a biosample." , + "description": "Information added or generated at ingest time." , "properties": { "submissionDate": { "description": "When project was first submitted to database.", @@ -21,12 +21,12 @@ "description": "ID of contact who last updated project", "type": "string" }, - "uuid": { + "document_id": { "description": "Identifier for document.", "comment": "This structure supports the current ingest API. It may change in future.", "type": "object", "properties": { - "uuid": { + "document_id": { "type": "string", "pattern": ".{8}-.{4}-.{4}-.{4}-.{12}" } @@ -37,5 +37,8 @@ "type": "string" } - } + }, + "required": [ + "submitter_id" + ] } \ No newline at end of file From a48feb3d847a52fdc823f80a7a03854b6f93c243 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 13:43:53 +0100 Subject: [PATCH 032/128] total_estimated_cells and enrichment now in cell_suspension.json as per #28 --- json_schema/cell_suspension.json | 10 ++++++++++ json_schema/project.json | 2 +- json_schema/sample.json | 16 ++++++---------- 3 files changed, 17 insertions(+), 11 deletions(-) diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 931538353..785957f2d 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -20,6 +20,16 @@ "description": "How cells were enriched for specific type or to weed out common types after disassociation.", "type": "array", "items": { "$ref": "enrichment.json" } + }, + "total_estimated_cells": { + "description": "Total estimated number of cells in sample. May be 1 for well based assays.", + "maximum": 1000000000.0, + "minimum": 0.1, + "type": "number" + }, + "well": { + "$ref": "well.json", + "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" } } } \ No newline at end of file diff --git a/json_schema/project.json b/json_schema/project.json index c5f557863..0aed2c606 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -5,7 +5,7 @@ "description": "project schema generate by tagSchemaToJson from project", "patternProperties": { "^characteristics_.*$": { - "description": "FIelds that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", "type": "string" } }, diff --git a/json_schema/sample.json b/json_schema/sample.json index ceaddd8d6..657cb32db 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -3,6 +3,12 @@ "additionalProperties": false, "required": ["details", "core"], "description": "Information about a biosample." , + "patternProperties": { + "^characteristics_.*$": { + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "type": "string" + } + }, "properties": { "core": { "$ref": "core.json", @@ -27,16 +33,6 @@ "type": "string" }, "type": "array" - }, - "total_estimated_cells": { - "description": "Total estimated number of cells in sample. May be 1 for well based assays.", - "maximum": 1000000000.0, - "minimum": 0.1, - "type": "number" - }, - "well": { - "$ref": "well.json", - "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" }, "sample_accessions": { "type": "object", From 975ee97e41366100c3802403411f0d393c1de825 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 13:55:21 +0100 Subject: [PATCH 033/128] Added required types to cell_line.json as per #29 --- json_schema/cell_line.json | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 2166d41df..41fcc6603 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -59,7 +59,11 @@ "$ref": "ontology.json", "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." } - }, + }, + "required":[ + "sample_type", + "name" + ], "title": "cell_line", "type": "object" } From d217f6152b00e068601e6366a620f1f617a061a0 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:02:18 +0100 Subject: [PATCH 034/128] Updated cell_suspension as per #30 and #31 --- json_schema/cell_suspension.json | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 785957f2d..0fbdbe852 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -6,12 +6,12 @@ "type": "string", "enum": ["cell suspension"] }, - "cell_type": { + "target_cell_type": { "description" : "cell types present in suspension", "type": "array", "items": {"$ref": "cell_type_ontology.json" } }, - "disassociation_protocol": { + "dissociation_protocol": { "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", "pattern": "^P-....-.*$", "type": "string" @@ -31,5 +31,8 @@ "$ref": "well.json", "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" } - } + }, + "required":[ + "sample_type" + ] } \ No newline at end of file From b4a5a2c38885f17b95c79e37d6d048cbb66d5675 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:04:31 +0100 Subject: [PATCH 035/128] Updated well.json as per #32 --- json_schema/well.json | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/json_schema/well.json b/json_schema/well.json index 07dca615b..e62e87928 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -3,10 +3,6 @@ "additionalProperties": false, "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { - "cell_type": { - "$ref": "cell_type_ontology.json", - "description": "the cell type which submitter thinks is in the well" - }, "col": { "description": "well column in plate", "type": "string" @@ -18,12 +14,7 @@ "plate": { "description": "plate id that well came from if any", "type": "string" - }, - "plating_protocol": { - "description": "all wells", - "pattern": "^P-....-.*$", - "type": "string" - }, + }, "quality": { "description": "Note on how good cell looks if imaged in well before sequencing", "enum": [ From 8b21c259d5ddec9ec0870e587e5cf7fbf0c6a488 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:20:56 +0100 Subject: [PATCH 036/128] Updated donor.json as per #33 --- json_schema/donor.json | 29 +++++++++++++++++++++++++---- 1 file changed, 25 insertions(+), 4 deletions(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index 7af2a75b8..8cb74dd49 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -21,7 +21,11 @@ "week", "year" ] - }, + }, + "smoking_history": { + "description": "Number of drinks consumed on a typical day", + "type": "string" + }, "ancestry": { "description": "term from https://www.ebi.ac.uk/ols/ontologies/ancestro", "type": "array", @@ -86,7 +90,20 @@ "items": { "$ref": "ontology.json" } - }, + }, + "nutritional_state": { + "description": "Normal, fasting, feeding tube removed, etc", + "enum": [ + "normal", + "fasting", + "feeding tube removed" + ] + }, + "recruitment_protocol": { + "description": "protocol accession for how donors were recruited", + "pattern": "^P-....-.*$", + "type": "string" + }, "sex": { "description": "Sex of donor. Either 'male' 'female' 'mixed' or 'unknown'", "enum": [ @@ -95,7 +112,11 @@ "mixed", "unknown" ] - }, + }, + "smoking_history": { + "description": "Estimated # of cigarattes smoked per day and for how many years", + "type": "string" + }, "species": { "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", "$ref": "ontology.json" @@ -107,7 +128,7 @@ "$ref": "ontology.json" } }, - "submitted_id": { + "submitter_id": { "description": "Free format string to help link back to submitter's donor database.", "type": "string" }, From f9beb9758c2ea67eeb1be711f96186e08f2209de Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:21:40 +0100 Subject: [PATCH 037/128] Updated death.json as per #34 --- json_schema/death.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/death.json b/json_schema/death.json index 330f870af..470416226 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -34,7 +34,7 @@ } }, "required": [ - "cause_of_death" + "cause_of_death", "time_of_death" ], "title": "death", "type": "object" From 93e2f879abda34df3f0a776a454501ec101b0490 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:24:02 +0100 Subject: [PATCH 038/128] Updated death.json as per #34 --- json_schema/death.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/death.json b/json_schema/death.json index 470416226..5add606ed 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -6,7 +6,7 @@ "properties": { "cause_of_death": { "description": "Cause of death from death report for human donor, from research lab for mouse", - "type": "string" + "$ref": "ontology.json" }, "cold_perfused": { "description": "If yes, was perfused with cold fluid to help preserve tissues before heart stopped", From 67c57225eb644703c4149120641ab858c8c29ca8 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:25:09 +0100 Subject: [PATCH 039/128] Updated organoid.json as per #30 --- json_schema/organoid.json | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/json_schema/organoid.json b/json_schema/organoid.json index db93e3322..2dcbff898 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -8,7 +8,10 @@ }, "model_for_organ": { "description": "Organ that this organoid is a model system for.", - "$ref": "ontlogy.json" + "$ref": "ontology.json" } - } + }, + "required":[ + "sample_type" + ] } \ No newline at end of file From a945165f4b6ce7bc8c733ffa730aa8ad7edb8288 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:30:16 +0100 Subject: [PATCH 040/128] Updated preservation to state_of_specimen as per #35 --- json_schema/sample_from_organism.json | 12 +++--------- .../{preservation.json => state_of_specimen.json} | 0 2 files changed, 3 insertions(+), 9 deletions(-) rename json_schema/{preservation.json => state_of_specimen.json} (100%) diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index 8b9b53069..03dce32cf 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -1,13 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", - "patternProperties": { - "^characteristics_.*$": { - "description": "FIelds that begin with sample.characteristics_ can contain any value, and the field name can be anything after the prefix", - "type": "string" - } - }, + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", "title": "sample from organism", "type": "object", "properties": { @@ -23,8 +17,8 @@ "$ref": "ontology.json", "description": "The organ that the sample came from. \"Blood\" and \"connective tissue\" count as organs." }, - "preservation": { - "$ref": "preservation.json", + "state_of_specimen": { + "$ref": "state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." }, "protocol_ids": { diff --git a/json_schema/preservation.json b/json_schema/state_of_specimen.json similarity index 100% rename from json_schema/preservation.json rename to json_schema/state_of_specimen.json From 50a29982c555fc998cef111bfb797da41ee8e6d7 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:35:52 +0100 Subject: [PATCH 041/128] Removed all references to specific samples from sample sub-types and replaced with protocol_ids array as per #36 --- json_schema/cell_line.json | 17 ++++++++++------- json_schema/cell_suspension.json | 13 ++++++++----- json_schema/donor.json | 11 +++++++---- json_schema/enrichment.json | 8 -------- json_schema/organoid.json | 8 ++++++++ json_schema/state_of_specimen.json | 10 ---------- 6 files changed, 33 insertions(+), 34 deletions(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 41fcc6603..97a7b97d4 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -18,12 +18,7 @@ "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", "$ref": "cell_type_ontology.json" - }, - "culture_protocol": { - "description": "pointer to the culture protocol", - "pattern": "^P-....-.*$", - "type": "string" - }, + }, "date_established": { "description": "when was the cell line established", "pattern": "^....-..-..$", @@ -50,7 +45,15 @@ "maximum": 1000, "minimum": 0, "type": "integer" - }, + }, + "protocol_ids": { + "description": "Array of protocol IDs from project.protocols used for this sample.", + "items": { + "pattern": "^.*-....-.*$", + "type": "string" + }, + "type": "array" + }, "publication": { "description": "what is the official name for the cell line?", "$ref": "publication.json" diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 0fbdbe852..c1af25d21 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -11,16 +11,19 @@ "type": "array", "items": {"$ref": "cell_type_ontology.json" } }, - "dissociation_protocol": { - "description": "How body part was treated to disassociate it into cells that can float individually in solution in sorter or microfluidics device.", - "pattern": "^P-....-.*$", - "type": "string" - }, "enrichment": { "description": "How cells were enriched for specific type or to weed out common types after disassociation.", "type": "array", "items": { "$ref": "enrichment.json" } }, + "protocol_ids": { + "description": "Array of protocol IDs from project.protocols used for this sample.", + "items": { + "pattern": "^.*-....-.*$", + "type": "string" + }, + "type": "array" + }, "total_estimated_cells": { "description": "Total estimated number of cells in sample. May be 1 for well based assays.", "maximum": 1000000000.0, diff --git a/json_schema/donor.json b/json_schema/donor.json index 8cb74dd49..4169307aa 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -99,10 +99,13 @@ "feeding tube removed" ] }, - "recruitment_protocol": { - "description": "protocol accession for how donors were recruited", - "pattern": "^P-....-.*$", - "type": "string" + "protocol_ids": { + "description": "Array of protocol IDs from project.protocols used for this sample.", + "items": { + "pattern": "^.*-....-.*$", + "type": "string" + }, + "type": "array" }, "sex": { "description": "Sex of donor. Either 'male' 'female' 'mixed' or 'unknown'", diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index 548c44a29..e4ad1415a 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -7,14 +7,6 @@ "description": "Text in the format of space delimited list of markers with +/-. Example: \"CD4+ CD8-\"", "type": "string" }, - "protocol": { - "description": "Refers to an enrichment protocol", - "items": { - "pattern": "^P-....-.*$", - "type": "string" - }, - "type": "array" - }, "size_max": { "description": "Maximum size passing selection in microns", "maximum": 10000, diff --git a/json_schema/organoid.json b/json_schema/organoid.json index 2dcbff898..21b8168f3 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -9,6 +9,14 @@ "model_for_organ": { "description": "Organ that this organoid is a model system for.", "$ref": "ontology.json" + }, + "protocol_ids": { + "description": "Array of protocol IDs from project.protocols used for this sample.", + "items": { + "pattern": "^.*-....-.*$", + "type": "string" + }, + "type": "array" } }, "required":[ diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 357d90a31..1c1283129 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -47,16 +47,6 @@ "maximum": 100000, "minimum": 0, "type": "integer" - }, - "preservation_protocol": { - "description": "Refers to a protocol that describes the use of chemicals, cold, or other means to prevent or retard biological or physical deterioration of sample.", - "pattern": "^P-....-.*$", - "type": "string" - }, - "storage_protocol": { - "description": "Refers to a protocol that says how sample was stored after preservation", - "pattern": "^P-....-.*$", - "type": "string" } }, "title": "preservation", From 778910a82c2cc3ecf7e3e17864a3212cf0ae5e96 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 14:43:45 +0100 Subject: [PATCH 042/128] Made authors and title required for publication.json #37 --- json_schema/cell_line.json | 2 +- json_schema/publication.json | 4 ++++ 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 97a7b97d4..25a103b92 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -55,7 +55,7 @@ "type": "array" }, "publication": { - "description": "what is the official name for the cell line?", + "description": "in what publication was the cell line creation cited", "$ref": "publication.json" }, "cell_cycle": { diff --git a/json_schema/publication.json b/json_schema/publication.json index 0fada0681..309f0863b 100644 --- a/json_schema/publication.json +++ b/json_schema/publication.json @@ -27,6 +27,10 @@ "type": "string" } }, + "required":[ + "authors", + "title" + ], "title": "publication", "type": "object" } From 8263d1904c02004bcbc11d4a4cb5303150c4249b Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 15:04:01 +0100 Subject: [PATCH 043/128] Removed submitter_id from donor as based on the definition, this is covered under user_supplied_id from sample.json #30, #33 --- json_schema/contact.json | 6 +----- json_schema/donor.json | 6 +----- 2 files changed, 2 insertions(+), 10 deletions(-) diff --git a/json_schema/contact.json b/json_schema/contact.json index 77aeb1fad..e089b8616 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -89,11 +89,7 @@ "description": "Email of contact for contributingauthors", "pattern": "^.*@.*..*$", "type": "string" - }, - "id": { - "description": "describe_me_please", - "type": "string" - }, + }, "institution": { "description": "Name of primary institute where contact works", "type": "string" diff --git a/json_schema/donor.json b/json_schema/donor.json index 4169307aa..483686fea 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -130,11 +130,7 @@ "items": { "$ref": "ontology.json" } - }, - "submitter_id": { - "description": "Free format string to help link back to submitter's donor database.", - "type": "string" - }, + }, "weight": { "description": "Weight of donor in kg", "maximum": 1000, From 73074c8e67db9a5582b76c4cf6f3201906f35340 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 15:29:50 +0100 Subject: [PATCH 044/128] Moved protocol_ids out of sample sub-types to protocols at sample.json level #36 --- json_schema/cell_line.json | 8 -------- json_schema/cell_suspension.json | 8 -------- json_schema/donor.json | 8 -------- json_schema/organoid.json | 8 -------- json_schema/project.json | 2 +- json_schema/sample.json | 7 +++++++ json_schema/sample_from_organism.json | 8 -------- 7 files changed, 8 insertions(+), 41 deletions(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 25a103b92..a85275e8f 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -46,14 +46,6 @@ "minimum": 0, "type": "integer" }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" - }, "publication": { "description": "in what publication was the cell line creation cited", "$ref": "publication.json" diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index c1af25d21..2d85b8f8e 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -16,14 +16,6 @@ "type": "array", "items": { "$ref": "enrichment.json" } }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" - }, "total_estimated_cells": { "description": "Total estimated number of cells in sample. May be 1 for well based assays.", "maximum": 1000000000.0, diff --git a/json_schema/donor.json b/json_schema/donor.json index 483686fea..ba860d23c 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -99,14 +99,6 @@ "feeding tube removed" ] }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" - }, "sex": { "description": "Sex of donor. Either 'male' 'female' 'mixed' or 'unknown'", "enum": [ diff --git a/json_schema/organoid.json b/json_schema/organoid.json index 21b8168f3..2dcbff898 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -9,14 +9,6 @@ "model_for_organ": { "description": "Organ that this organoid is a model system for.", "$ref": "ontology.json" - }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" } }, "required":[ diff --git a/json_schema/project.json b/json_schema/project.json index 0aed2c606..2e7d3c77e 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -50,7 +50,7 @@ "type": "string" }, "id": { - "description": "A unique ID for project, may be GEO or Array Express ID for imported projects", + "description": "A unique ID for project", "type": "string" }, "ncbi_bioproject": { diff --git a/json_schema/sample.json b/json_schema/sample.json index 657cb32db..26470784c 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -27,6 +27,13 @@ { "$ref": "organoid.json" } ] }, + "protocols": { + "items": { + "$ref": "protocol.json", + "description": "An array of protocol modules. Assay and project protocols reference this." + }, + "type": "array" + }, "supplementary_files": { "description": "Sample level supplementary files.", "items": { diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index 03dce32cf..bbc247f0a 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -20,14 +20,6 @@ "state_of_specimen": { "$ref": "state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." - }, - "protocol_ids": { - "description": "Array of protocol IDs from project.protocols used for this sample.", - "items": { - "pattern": "^.*-....-.*$", - "type": "string" - }, - "type": "array" } }, "required": [ From 88ff222558fc17da0a16de8f8f49922851d7b84e Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 15:36:25 +0100 Subject: [PATCH 045/128] Moved protocols reference from project.json to sample.json #38 --- json_schema/project.json | 9 +-------- 1 file changed, 1 insertion(+), 8 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index 2e7d3c77e..8ae2fc34e 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -57,14 +57,7 @@ "description": "NCBI bioproject ID", "pattern": "^PRJNA.*$", "type": "string" - }, - "protocols": { - "items": { - "$ref": "protocol.json", - "description": "An array of protocol modules. Assay and project protocols reference this." - }, - "type": "array" - }, + }, "publications": { "items": { "$ref": "publication.json", From 7a1689082da2bc09bedd6f6cfd22a5b6f66371ce Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 15:45:44 +0100 Subject: [PATCH 046/128] Moved updater and submitter info out of protocol.json #39 --- json_schema/protocol.json | 20 +------------------- 1 file changed, 1 insertion(+), 19 deletions(-) diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 0e40e7b07..ad50f9c99 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -29,28 +29,10 @@ "retail_name": { "description": "the retail name of the kit used e.g SureCell WTA 3\u2032 Library Prep Kit", "type": "string" - }, - "submit_date": { - "description": "When protocol was first submitted to database.", - "pattern": "^2...-..-..$", - "type": "string" - }, - "submitter_id": { - "description": "who created this entry", - "type": "string" - }, + }, "type": { "$ref": "ontology.json", "description": "Type of protocol, ideally an EFO term" - }, - "update_date": { - "description": "When protocol was last updated", - "pattern": "^2...-..-..$", - "type": "string" - }, - "updater_id": { - "description": "who last updated this entry", - "type": "string" } }, "required": [ From d78b848101424b2b06dcc314cde63a7ade7f9aac Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 16:27:58 +0100 Subject: [PATCH 047/128] Standardised representation of assay.json and relevant sub-objects #40 --- json_schema/assay.json | 17 ++++++++++------- json_schema/ingest.json | 4 ++-- json_schema/protocol.json | 3 ++- json_schema/rna.json | 2 +- json_schema/sample.json | 2 +- json_schema/state_of_specimen.json | 3 ++- json_schema/well.json | 1 + 7 files changed, 19 insertions(+), 13 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index 25b738cc4..e5e3617ed 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -4,14 +4,18 @@ "definitions": {}, "description": "An assay contains Information relevant to how RNA expression levels were assayed or otherwise the sample was converted into digital information", "properties": { + "core": { + "description": "type and schema for this object", + "$ref": "core.json" + }, "id": { "description": "unique id for this assay", "type": "string" - }, - "sample_id": { - "description": "id of sample that was assayed", - "type": "string" - }, + }, + "imaging": { + "description": "Information on image based RNA quantification assays", + "$ref": "imaging.json" + }, "rna": { "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", "$ref": "rna.json" @@ -26,8 +30,7 @@ } }, "required": [ - "id", - "sample_id" + "core", "id" ], "title": "assay", "type": "object" diff --git a/json_schema/ingest.json b/json_schema/ingest.json index dda613c5c..0621cc932 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -3,7 +3,7 @@ "additionalProperties": false, "description": "Information added or generated at ingest time." , "properties": { - "submissionDate": { + "submission_date": { "description": "When project was first submitted to database.", "format": "date-time", "type": "string" @@ -39,6 +39,6 @@ }, "required": [ - "submitter_id" + "submitter_id", "submission_date" ] } \ No newline at end of file diff --git a/json_schema/protocol.json b/json_schema/protocol.json index ad50f9c99..c2aaca16a 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -37,7 +37,8 @@ }, "required": [ "core", - "id" + "id", + "type" ], "title": "protocol", "type": "object" diff --git a/json_schema/rna.json b/json_schema/rna.json index 203ce8e5d..819e4ed03 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -61,7 +61,7 @@ } }, "required": [ - "library_construction" + "end_bias", "library_construction", "strand" ], "title": "rna", "type": "object" diff --git a/json_schema/sample.json b/json_schema/sample.json index 26470784c..33f0f5c13 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "required": ["details", "core"], + "required": ["details", "core", "id"], "description": "Information about a biosample." , "patternProperties": { "^characteristics_.*$": { diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 1c1283129..4d5a4e7e9 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -48,7 +48,8 @@ "minimum": 0, "type": "integer" } - }, + }, + "required":[], "title": "preservation", "type": "object" } diff --git a/json_schema/well.json b/json_schema/well.json index e62e87928..e679c231f 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -29,6 +29,7 @@ "type": "string" } }, + "required":[], "title": "well", "type": "object" } From 2cbe7aa2d37276ba607ecef7a538f6fafa93c6b3 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 17:12:44 +0100 Subject: [PATCH 048/128] Standardised all date fields to date-time #41 --- json_schema/cell_line.json | 2 +- json_schema/death.json | 2 +- json_schema/ingest.json | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index a85275e8f..2148becdc 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -21,7 +21,7 @@ }, "date_established": { "description": "when was the cell line established", - "pattern": "^....-..-..$", + "format": "date-time", "type": "string" }, "derived_from": { diff --git a/json_schema/death.json b/json_schema/death.json index 5add606ed..debbd9683 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -29,7 +29,7 @@ }, "time_of_death": { "description": "Date and time of death on death certificate for deceased donor", - "pattern": "^....-..-.. ..:..:..$", + "format": "date-time", "type": "string" } }, diff --git a/json_schema/ingest.json b/json_schema/ingest.json index 0621cc932..f5c43ee62 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -14,7 +14,7 @@ }, "update_date": { "description": "When project was last updated", - "pattern": "^2...-..-..$", + "format": "date-time", "type": "string" }, "updater_id": { From 16657f1cee14bd36af555f167d3e89a9a7611277 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 24 Oct 2017 17:16:59 +0100 Subject: [PATCH 049/128] Converted yes/no enums to booleans #26 --- json_schema/death.json | 5 +---- json_schema/donor.json | 5 +---- json_schema/seq.json | 5 +---- 3 files changed, 3 insertions(+), 12 deletions(-) diff --git a/json_schema/death.json b/json_schema/death.json index debbd9683..5c57aaeeb 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -10,10 +10,7 @@ }, "cold_perfused": { "description": "If yes, was perfused with cold fluid to help preserve tissues before heart stopped", - "enum": [ - "no", - "yes" - ] + "type": "boolean" }, "days_on_ventilator": { "description": "Days on ventilator before dying", diff --git a/json_schema/donor.json b/json_schema/donor.json index ba860d23c..4c398864e 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -70,10 +70,7 @@ }, "is_living": { "description": "If yes donor is living at time of sample donation.", - "enum": [ - "no", - "yes" - ] + "type": "boolean" }, "life_stage": { "description": "describe_me_please", diff --git a/json_schema/seq.json b/json_schema/seq.json index a0b9f3594..94ad8b7c4 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -95,10 +95,7 @@ }, "paired_ends": { "description": "Is a paired end sequencing strategy used? Values are yes/no", - "enum": [ - "no", - "yes" - ] + "type": "boolean" }, "sra_experiment": { "description": "NCBI Short Read Archive experiment accession (SRX)", From 2bebfd8335f8d94030bf36bbb3c527eda1140026 Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Wed, 25 Oct 2017 16:05:13 +0200 Subject: [PATCH 050/128] removed core and details sub properties form sample instead have the following at the root --- json_schema/cell_line.json | 12 ++---------- json_schema/cell_suspension.json | 2 +- json_schema/core.json | 4 ++-- json_schema/donor.json | 10 +--------- json_schema/sample.json | 33 ++++++++------------------------ 5 files changed, 14 insertions(+), 47 deletions(-) diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 2148becdc..26fed46ac 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -23,11 +23,7 @@ "description": "when was the cell line established", "format": "date-time", "type": "string" - }, - "derived_from": { - "description": "Which other biosample is this cell_line derived from, if available", - "type": "string" - }, + }, "disease": { "description": "text describing disease association, preferable a disease found in EFO", "$ref": "disease_ontology.json" @@ -35,11 +31,7 @@ "karyotype": { "description": "the karyotype of the cell line", "type": "string" - }, - "name": { - "description": "what is the official name for the cell line?", - "$ref": "ontology.json" - }, + }, "passage_number": { "description": "how many passages the cell line as been through", "maximum": 1000, diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 2d85b8f8e..9e553162b 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "", + "description": "", "properties": { "sample_type": { "type": "string", diff --git a/json_schema/core.json b/json_schema/core.json index 248571130..ccad4e79d 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -23,7 +23,7 @@ "analysis" ] }, - "user_supplied_id":{ + "id":{ "description": "A local identifier for the entity (e.g. sample, assay, protocol, file, analysis).", "type": "string" }, @@ -41,6 +41,6 @@ } }, "required": [ - "type" + "type","id" ] } diff --git a/json_schema/donor.json b/json_schema/donor.json index 4c398864e..b69c21890 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -22,10 +22,6 @@ "year" ] }, - "smoking_history": { - "description": "Number of drinks consumed on a typical day", - "type": "string" - }, "ancestry": { "description": "term from https://www.ebi.ac.uk/ols/ontologies/ancestro", "type": "array", @@ -63,11 +59,7 @@ "maximum": 10, "minimum": 0, "type": "number" - }, - "id": { - "description": "A unique ID for this donor", - "type": "string" - }, + }, "is_living": { "description": "If yes donor is living at time of sample donation.", "type": "boolean" diff --git a/json_schema/sample.json b/json_schema/sample.json index 33f0f5c13..851b86fdd 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,8 +1,15 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "required": ["details", "core", "id"], "description": "Information about a biosample." , + "allOf": [{ "$ref": "core.json" }], + "oneOf": [ + { "$ref": "donor.json" }, + { "$ref": "sample_from_organism.json" }, + { "$ref": "cell_line.json" }, + { "$ref": "cell_suspension.json" }, + { "$ref": "organoid.json" } + ], "patternProperties": { "^characteristics_.*$": { "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", @@ -10,30 +17,6 @@ } }, "properties": { - "core": { - "$ref": "core.json", - "description": "type and schema for this object" - }, - "id": { - "description": "A unique ID for this sample", - "type": "string" - }, - "details": { - "oneOf": [ - { "$ref": "donor.json" }, - { "$ref": "sample_from_organism.json" }, - { "$ref": "cell_line.json" }, - { "$ref": "cell_suspension.json" }, - { "$ref": "organoid.json" } - ] - }, - "protocols": { - "items": { - "$ref": "protocol.json", - "description": "An array of protocol modules. Assay and project protocols reference this." - }, - "type": "array" - }, "supplementary_files": { "description": "Sample level supplementary files.", "items": { From aa204e79b7db8fb7d872701b448dcc031278825c Mon Sep 17 00:00:00 2001 From: dosumis Date: Wed, 25 Oct 2017 15:37:05 +0100 Subject: [PATCH 051/128] Added a method for local testing --- src/schema_tests.py | 40 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 src/schema_tests.py diff --git a/src/schema_tests.py b/src/schema_tests.py new file mode 100644 index 000000000..f36bf54a2 --- /dev/null +++ b/src/schema_tests.py @@ -0,0 +1,40 @@ +import unittest +from schema_test_suite import get_validator, validate +import os +import subprocess + +# This => instant tests, but still not sure it is best way to manage. +# Might be better to have configs mapping schemas to tests. +# Or could run the whole thing with a generic script using a +# standard directory struc and file name convention (brittle to dir +# restructuring). Even with that, probably need a config to list which +# tests to run. + + +def get_local_base_uri(script_to_json_relative_path): + """ + Takes the relative path from script to json schema files as an input. + Switches script to run in json schema folder. + returns base URI for schema folder on local file system + """ + # Might be better done in shell as part of travis job and stored as env? + os.chdir(script_to_json_relative_path) + pwd = subprocess.check_output('pwd').decode("utf-8").rstrip() + return "file://" + pwd + '/' + +class TestSchemas(unittest.TestCase): + + def setUp(self): + # Need a better way to manage paths. Nasty bit of hard wiring for now + base_uri = get_local_base_uri('../jsonschema/') + + def positive_tests(self): + v = get_validator('sample.json', self.base_uri) + validate(v, {}) + return + + def negative_tests(self): + return + + + \ No newline at end of file From b57302f2244bb54e994ecccefed7d07d8fb0df64 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Wed, 25 Oct 2017 15:40:17 +0100 Subject: [PATCH 052/128] Removed empty required blocks, added contact.phone and changed donor.species to donor.genus_species --- json_schema/analysis.json | 2 +- json_schema/contact.json | 4 ++++ json_schema/donor.json | 4 ++-- json_schema/state_of_specimen.json | 3 +-- json_schema/well.json | 3 +-- 5 files changed, 9 insertions(+), 7 deletions(-) diff --git a/json_schema/analysis.json b/json_schema/analysis.json index a4dd9ef6d..171e9834e 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -1,4 +1,5 @@ { + "$schema" : "http://json-schema.org/draft-04/schema#", "additionalProperties" : true, "properties" : { "tasks" : { @@ -125,7 +126,6 @@ "type" : "object" } }, - "$schema" : "https://json-schema.org/draft-04/schema#", "required" : [ "timestamp_start_utc", "timestamp_stop_utc", diff --git a/json_schema/contact.json b/json_schema/contact.json index e089b8616..f953295ed 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -101,6 +101,10 @@ "name": { "description": "Text formatted with first name, middle, last in that order separated by commas. Usually middle is just an initial.", "type": "string" + }, + "phone":{ + "description": "Phone number (including country code) of submitter or submitter's lab", + "type": "string" } }, "required": [ diff --git a/json_schema/donor.json b/json_schema/donor.json index 4c398864e..687d10f6d 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -109,7 +109,7 @@ "description": "Estimated # of cigarattes smoked per day and for how many years", "type": "string" }, - "species": { + "genus_species": { "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", "$ref": "ontology.json" }, @@ -128,7 +128,7 @@ } }, "required": [ - "species", "is_living", "sample_type" + "genus_species", "is_living", "sample_type" ], "title": "donor", "type": "object" diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 4d5a4e7e9..f7ddb9d6f 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -49,7 +49,6 @@ "type": "integer" } }, - "required":[], - "title": "preservation", + "title": "preservation", "type": "object" } diff --git a/json_schema/well.json b/json_schema/well.json index e679c231f..11346bfa5 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -29,7 +29,6 @@ "type": "string" } }, - "required":[], - "title": "well", + "title": "well", "type": "object" } From fe6f7a71a7a62fffa34d5bdae67e756c604f064d Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 26 Oct 2017 11:19:54 +0100 Subject: [PATCH 053/128] * Test suite now recurses through subschemas * Simple test method added for local testing. --- src/schema_test_suite.py | 25 +++++++++++++++++++++---- 1 file changed, 21 insertions(+), 4 deletions(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 2facf6f92..0c07f9580 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -1,6 +1,8 @@ import json from jsonschema import Draft4Validator, RefResolver, SchemaError import warnings +import subprocess +import os def get_json_from_file(filename): @@ -40,13 +42,28 @@ def validate(validator, instance): recurse_through_errors(es) return False -def recurse_through_errors(es): +def recurse_through_errors(es, level = 0): """Recurse through errors posting message and schema path until context is empty""" # Assuming blank context is a sufficient escape clause here. for e in es: - warnings.warn("\t".join([e.message, - str(e.absolute_schema_path)]) + "\n") + warnings.warn("***"*level + "subschema level " + str(level) + "\t".join([e.message, + "Path to error:" + str(e.absolute_schema_path)]) + "\n") if e.context: - recurse_through_errors(e.context) + level += 1 + recurse_through_errors(e.context, level = level) + + +def test_local(path_to_schema_dir, schema_file, instance_file): + """Tests a single instance against a single schema. + Assumes all schema files in single dir. + path_to_schema_dir may be relative. + schema_file and instance_file may be local to schema dir or full path.""" + os.chdir(path_to_schema_dir) + pwd = subprocess.check_output('pwd').decode("utf-8").rstrip() + base_uri = "file://" + pwd + "/" + sv = get_validator(schema_file, base_uri) + i = get_json_from_file(instance_file) + print("Testing: %s" % instance_file) + validate(sv, i) From c729f27113df5dea270a1999dd3b0c1571ec2576 Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 26 Oct 2017 11:25:13 +0100 Subject: [PATCH 054/128] Setting up file struc for tests & adding first test file. --- schema_tests/sample/donor_test1.json | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 schema_tests/sample/donor_test1.json diff --git a/schema_tests/sample/donor_test1.json b/schema_tests/sample/donor_test1.json new file mode 100644 index 000000000..127199770 --- /dev/null +++ b/schema_tests/sample/donor_test1.json @@ -0,0 +1,16 @@ +{ + "core" : { + "id": "d1", + "type": "sample" + }, + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + +} \ No newline at end of file From a8533f6e7f15a63cfa7a7e61e20ec93f6772c7bc Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 26 Oct 2017 12:48:13 +0200 Subject: [PATCH 055/128] finish rework of samples schema --- .travis.yml | 2 +- json_schema/core.json | 3 +- json_schema/donor.json | 12 +-- json_schema/ingest.json | 15 ++-- json_schema/ontology.json | 3 +- json_schema/sample.json | 81 ++++++++++++++----- json_schema/sample_bundle.json | 8 ++ json_schema/sample_from_organism.json | 11 ++- json_schema/sample_ingest.json | 23 ++++++ json_schema/state_of_specimen.json | 3 +- json_schema/well.json | 3 +- .../10x_pbmc8k_donor_0-ingest.json | 21 +++++ schema_test_files/10x_pbmc8k_donor_0.json | 14 ++++ .../10x_pbmc8k_sample_0-ingest.json | 24 ++++++ schema_test_files/10x_pbmc8k_sample_0.json | 16 ++++ .../10x_pbmc8k_sample_bundle.json | 48 +++++++++++ src/sample_test.py | 29 +++++++ 17 files changed, 262 insertions(+), 54 deletions(-) create mode 100644 json_schema/sample_bundle.json create mode 100644 json_schema/sample_ingest.json create mode 100644 schema_test_files/10x_pbmc8k_donor_0-ingest.json create mode 100644 schema_test_files/10x_pbmc8k_donor_0.json create mode 100644 schema_test_files/10x_pbmc8k_sample_0-ingest.json create mode 100644 schema_test_files/10x_pbmc8k_sample_0.json create mode 100644 schema_test_files/10x_pbmc8k_sample_bundle.json create mode 100644 src/sample_test.py diff --git a/.travis.yml b/.travis.yml index 469671ac8..ad278981d 100644 --- a/.travis.yml +++ b/.travis.yml @@ -8,5 +8,5 @@ install: - pip install -r requirements.txt script: - - cd src + - cd tests - python simple_test.py diff --git a/json_schema/core.json b/json_schema/core.json index ccad4e79d..03bf18dd8 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -1,7 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "core object found in all modules", + "description": "core object found in all modules", "properties": { "schema_url": { "description": "URL of json schema document that validates this version of this module.", diff --git a/json_schema/donor.json b/json_schema/donor.json index b69c21890..3ae6dc515 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -1,12 +1,8 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "donor schema generate by tagSchemaToJson from donor", + "description": "donor schema generate by tagSchemaToJson from donor", + "additionalProperties" : false, "properties": { - "sample_type": { - "type": "string", - "enum": ["donor"] - }, "age": { "description": "Age in age_units. Expressed since birth. For embryos measured since fertilization.", "maximum": 150, @@ -120,8 +116,8 @@ } }, "required": [ - "species", "is_living", "sample_type" + "species", "is_living" ], - "title": "donor", + "title": "donor", "type": "object" } diff --git a/json_schema/ingest.json b/json_schema/ingest.json index f5c43ee62..7e4960636 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -3,7 +3,7 @@ "additionalProperties": false, "description": "Information added or generated at ingest time." , "properties": { - "submission_date": { + "submissionDate": { "description": "When project was first submitted to database.", "format": "date-time", "type": "string" @@ -12,7 +12,7 @@ "description": "ID of contact who first submitted project", "type": "string" }, - "update_date": { + "updateDate": { "description": "When project was last updated", "format": "date-time", "type": "string" @@ -24,13 +24,8 @@ "document_id": { "description": "Identifier for document.", "comment": "This structure supports the current ingest API. It may change in future.", - "type": "object", - "properties": { - "document_id": { - "type": "string", - "pattern": ".{8}-.{4}-.{4}-.{4}-.{12}" - } - } + "type": "string", + "pattern": ".{8}-.{4}-.{4}-.{4}-.{12}" }, "accession": { "description": "A unique accession for this entity, provided by the broker.", @@ -39,6 +34,6 @@ }, "required": [ - "submitter_id", "submission_date" + "document_id", "submissionDate" ] } \ No newline at end of file diff --git a/json_schema/ontology.json b/json_schema/ontology.json index dc7075f63..afde80a9d 100644 --- a/json_schema/ontology.json +++ b/json_schema/ontology.json @@ -1,7 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "A term that may be associated with an ontology term", + "description": "A term that may be associated with an ontology term", "properties": { "text": { "description": "The text for the term as the user provides it.", diff --git a/json_schema/sample.json b/json_schema/sample.json index 851b86fdd..b97a8bd61 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,53 +1,92 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, "description": "Information about a biosample." , - "allOf": [{ "$ref": "core.json" }], - "oneOf": [ - { "$ref": "donor.json" }, - { "$ref": "sample_from_organism.json" }, - { "$ref": "cell_line.json" }, - { "$ref": "cell_suspension.json" }, - { "$ref": "organoid.json" } - ], + "additionalProperties" : false, "patternProperties": { "^characteristics_.*$": { "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", - "type": "string" + "type": "string" + } }, "properties": { + "schema_url": { + "description": "URL of json schema document that validates this version of this module.", + "type": "string" + }, + "schema_version": { + "description": "Version number in major.minor.patch format. Example 3.2.4. Major version changes likely require change to software. Patches are just documentation changes", + "pattern": "^...*..*$", + "type": "string" + }, + "type": { + "description": "The name of the core metadata entity type.", + "enum": [ + "donor", + "sample_from_organism", + "cell_suspension" + ] + }, + "id":{ + "description": "A local identifier for the entity (e.g. sample, assay, protocol, file, analysis).", + "type": "string" + }, + "name": { + "description": "A short descriptive name for the entity (e.g. sample, assay, protocol, file, analysis). Should be enough to distinguish it from other samples in the project.", + "type": "string" + }, + "comment": { + "description": "A free text commment capturing any relevant information not captured by other fields.", + "type": "string" + }, + "description": { + "description": "A general description of the item being submitted (e.g. sample, assay, protocol, file, analysis).", + "type": "string" + }, + "donor" : { + "$ref": "donor.json" + }, + "sample_from_organism" : { + "$ref": "sample_from_organism.json" + }, + "ncbi_taxon_id" : { + "description": "Taxon id from NCBI", + "type" : "integer" + }, "supplementary_files": { - "description": "Sample level supplementary files.", + "description": "Sample level supplementary files.", "items": { "type": "string" - }, + }, "type": "array" }, "sample_accessions": { "type": "object", - "description": "One or more accession numbers from a standard archive.", + "description": "One or more accession numbers from a standard archive.", "additionalProperties" : false, "properties": { "biosd_sample": { - "description": "EBI biosample ID", + "description": "EBI biosample ID", "type": "string" - }, + }, "ncbi_biosample": { - "description": "NCBI biosample ID", + "description": "NCBI biosample ID", "type": "string" }, "geo_sample": { - "description": "NCBI GEO sample accession", - "pattern": "^GSM.*$", + "description": "NCBI GEO sample accession", + "pattern": "^GSM.*$", "type": "string" }, "ena_sample": { - "description": "European nucleotide archive sample ID", - "pattern": "^ERS.*$", + "description": "European nucleotide archive sample ID", + "pattern": "^ERS.*$", "type": "string" } } } - } + }, + "allOf" : [{"required" : ["id", "type"]}], + "oneOf" : [{"required" : ["donor"]}, {"required" : ["sample_from_organism"]}] + } \ No newline at end of file diff --git a/json_schema/sample_bundle.json b/json_schema/sample_bundle.json new file mode 100644 index 000000000..c6bad86ed --- /dev/null +++ b/json_schema/sample_bundle.json @@ -0,0 +1,8 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for a sample bundle" , + "type": "array", + "items": { + "$ref" : "sample_ingest.json" + } +} \ No newline at end of file diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index bbc247f0a..22ab87f57 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -5,12 +5,8 @@ "title": "sample from organism", "type": "object", "properties": { - "sample_type": { - "type": "string", - "enum": ["sample from organism"] - }, "body_part": { - "$ref": "body_part_ontology.json", + "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, "organ": { @@ -20,10 +16,13 @@ "state_of_specimen": { "$ref": "state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." + }, + "donor_id" : { + "type" : "string", + "description" : "the local identifier for the donor of this sample" } }, "required": [ - "sample_type", "body_part", "organ" ] diff --git a/json_schema/sample_ingest.json b/json_schema/sample_ingest.json new file mode 100644 index 000000000..bdb58fefc --- /dev/null +++ b/json_schema/sample_ingest.json @@ -0,0 +1,23 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "A schema for a sample entity with added ingest data" , + "properties": { + "core" : { + "$ref": "ingest.json", + "description": "Sample content", + "type": "object" + }, + "content": { + "$ref": "sample.json", + "description": "Sample content", + "type": "object" + }, + "derived_from" : { + "type": "string" + } + }, + "required": [ + "core", "content" + ] +} \ No newline at end of file diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 4d5a4e7e9..f7ddb9d6f 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -49,7 +49,6 @@ "type": "integer" } }, - "required":[], - "title": "preservation", + "title": "preservation", "type": "object" } diff --git a/json_schema/well.json b/json_schema/well.json index e679c231f..11346bfa5 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -29,7 +29,6 @@ "type": "string" } }, - "required":[], - "title": "well", + "title": "well", "type": "object" } diff --git a/schema_test_files/10x_pbmc8k_donor_0-ingest.json b/schema_test_files/10x_pbmc8k_donor_0-ingest.json new file mode 100644 index 000000000..0a949b1f5 --- /dev/null +++ b/schema_test_files/10x_pbmc8k_donor_0-ingest.json @@ -0,0 +1,21 @@ +{ + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0999697" + }, + "content" : { + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + } +} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_donor_0.json b/schema_test_files/10x_pbmc8k_donor_0.json new file mode 100644 index 000000000..b4ae3611c --- /dev/null +++ b/schema_test_files/10x_pbmc8k_donor_0.json @@ -0,0 +1,14 @@ +{ + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + +} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0-ingest.json b/schema_test_files/10x_pbmc8k_sample_0-ingest.json new file mode 100644 index 000000000..a7bba3c92 --- /dev/null +++ b/schema_test_files/10x_pbmc8k_sample_0-ingest.json @@ -0,0 +1,24 @@ +{ + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0888697" + }, + "content" : { + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } + } +} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0.json b/schema_test_files/10x_pbmc8k_sample_0.json new file mode 100644 index 000000000..f61b1471d --- /dev/null +++ b/schema_test_files/10x_pbmc8k_sample_0.json @@ -0,0 +1,16 @@ +{ + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } +} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_bundle.json b/schema_test_files/10x_pbmc8k_sample_bundle.json new file mode 100644 index 000000000..6257aa276 --- /dev/null +++ b/schema_test_files/10x_pbmc8k_sample_bundle.json @@ -0,0 +1,48 @@ +[ + { + "core": { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0888697" + }, + "content": { + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism": { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } + } + }, + { + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0999697" + }, + "content" : { + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + }, + "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + } +] \ No newline at end of file diff --git a/src/sample_test.py b/src/sample_test.py new file mode 100644 index 000000000..a0bbfb2d7 --- /dev/null +++ b/src/sample_test.py @@ -0,0 +1,29 @@ +from schema_test_suite import get_validator, get_json_from_file, validate +import os +import subprocess + +# Simple first test - are json files in json_schema folder +# valid json schema docs? + +os.chdir('../json_schema') +pwd = subprocess.check_output('pwd').decode("utf-8").rstrip() +base_uri = "file://" + pwd + "/" +print(base_uri) +sv = get_validator('sample.json', base_uri) +dt1 = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0.json') +# Specific schema tests to follow . +validate(sv, dt1) + +sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') +validate(sv, sfo1) + +sample_ingest_validator = get_validator('sample_ingest.json', base_uri) +sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0-ingest.json') +validate(sample_ingest_validator, sample_ingest_file) + +sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0-ingest.json') +validate(sample_ingest_validator, sample_ingest_file) + +sample_bundle_validator = get_validator('sample_bundle.json', base_uri) +sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') +validate(sample_bundle_validator, sample_bundle_file) From 889967e2022893edaa650154cf7c6f673b0a2aec Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 26 Oct 2017 12:51:00 +0200 Subject: [PATCH 056/128] typo fix --- schema_test_files/10x_pbmc8k_sample_bundle.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/schema_test_files/10x_pbmc8k_sample_bundle.json b/schema_test_files/10x_pbmc8k_sample_bundle.json index 6257aa276..a37573ad7 100644 --- a/schema_test_files/10x_pbmc8k_sample_bundle.json +++ b/schema_test_files/10x_pbmc8k_sample_bundle.json @@ -43,6 +43,6 @@ }, "ncbi_taxon_id": 9606 }, - "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1"git add } ] \ No newline at end of file From 95e7211613eeec926623a44a5df5f573aacd568c Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Thu, 26 Oct 2017 11:59:32 +0100 Subject: [PATCH 057/128] AJV validator test as per HCA-160 --- json_schema/assay.json | 2 +- json_schema/barcode.json | 2 +- json_schema/cell_line.json | 6 +- json_schema/cell_suspension.json | 4 +- json_schema/contact.json | 2 +- json_schema/core.json | 2 +- json_schema/death.json | 2 +- json_schema/donor.json | 4 +- json_schema/enrichment.json | 2 +- json_schema/imaging.json | 2 +- json_schema/ingest.json | 2 +- json_schema/ontology.json | 2 +- json_schema/organoid.json | 2 +- json_schema/project.json | 2 +- json_schema/protocol.json | 2 +- json_schema/publication.json | 2 +- json_schema/rna.json | 2 +- json_schema/sample.json | 2 +- json_schema/sample_from_organism.json | 4 +- json_schema/seq.json | 2 +- json_schema/single_cell.json | 2 +- json_schema/state_of_specimen.json | 2 +- json_schema/submission.json | 2 +- json_schema/well.json | 2 +- .../node_modules/ajv/.tonic_example.js | 20 + src/js-validator/node_modules/ajv/LICENSE | 22 + src/js-validator/node_modules/ajv/README.md | 1302 +++ .../node_modules/ajv/dist/ajv.bundle.js | 7310 +++++++++++++++++ .../node_modules/ajv/dist/ajv.min.js | 3 + .../node_modules/ajv/dist/ajv.min.js.map | 1 + .../node_modules/ajv/dist/nodent.min.js | 2 + .../node_modules/ajv/dist/regenerator.min.js | 2 + .../node_modules/ajv/lib/$data.js | 49 + .../node_modules/ajv/lib/ajv.d.ts | 322 + src/js-validator/node_modules/ajv/lib/ajv.js | 477 ++ .../node_modules/ajv/lib/cache.js | 26 + .../node_modules/ajv/lib/compile/_rules.js | 31 + .../node_modules/ajv/lib/compile/async.js | 90 + .../node_modules/ajv/lib/compile/equal.js | 3 + .../ajv/lib/compile/error_classes.js | 34 + .../node_modules/ajv/lib/compile/formats.js | 135 + .../node_modules/ajv/lib/compile/index.js | 379 + .../node_modules/ajv/lib/compile/resolve.js | 271 + .../node_modules/ajv/lib/compile/rules.js | 58 + .../ajv/lib/compile/schema_obj.js | 9 + .../ajv/lib/compile/ucs2length.js | 20 + .../node_modules/ajv/lib/compile/util.js | 267 + .../node_modules/ajv/lib/dot/_limit.jst | 96 + .../node_modules/ajv/lib/dot/_limitItems.jst | 10 + .../node_modules/ajv/lib/dot/_limitLength.jst | 10 + .../ajv/lib/dot/_limitProperties.jst | 10 + .../node_modules/ajv/lib/dot/allOf.jst | 34 + .../node_modules/ajv/lib/dot/anyOf.jst | 48 + .../node_modules/ajv/lib/dot/coerce.def | 61 + .../node_modules/ajv/lib/dot/const.jst | 11 + .../node_modules/ajv/lib/dot/contains.jst | 57 + .../node_modules/ajv/lib/dot/custom.jst | 191 + .../node_modules/ajv/lib/dot/defaults.def | 32 + .../node_modules/ajv/lib/dot/definitions.def | 199 + .../node_modules/ajv/lib/dot/dependencies.jst | 80 + .../node_modules/ajv/lib/dot/enum.jst | 30 + .../node_modules/ajv/lib/dot/errors.def | 194 + .../node_modules/ajv/lib/dot/format.jst | 106 + .../node_modules/ajv/lib/dot/items.jst | 100 + .../node_modules/ajv/lib/dot/missing.def | 39 + .../node_modules/ajv/lib/dot/multipleOf.jst | 20 + .../node_modules/ajv/lib/dot/not.jst | 43 + .../node_modules/ajv/lib/dot/oneOf.jst | 44 + .../node_modules/ajv/lib/dot/pattern.jst | 14 + .../node_modules/ajv/lib/dot/properties.jst | 327 + .../ajv/lib/dot/propertyNames.jst | 54 + .../node_modules/ajv/lib/dot/ref.jst | 85 + .../node_modules/ajv/lib/dot/required.jst | 108 + .../node_modules/ajv/lib/dot/uniqueItems.jst | 38 + .../node_modules/ajv/lib/dot/validate.jst | 272 + .../node_modules/ajv/lib/dotjs/README.md | 3 + .../node_modules/ajv/lib/dotjs/_limit.js | 149 + .../node_modules/ajv/lib/dotjs/_limitItems.js | 76 + .../ajv/lib/dotjs/_limitLength.js | 81 + .../ajv/lib/dotjs/_limitProperties.js | 76 + .../node_modules/ajv/lib/dotjs/allOf.js | 43 + .../node_modules/ajv/lib/dotjs/anyOf.js | 73 + .../node_modules/ajv/lib/dotjs/const.js | 55 + .../node_modules/ajv/lib/dotjs/contains.js | 81 + .../node_modules/ajv/lib/dotjs/custom.js | 226 + .../ajv/lib/dotjs/dependencies.js | 167 + .../node_modules/ajv/lib/dotjs/enum.js | 65 + .../node_modules/ajv/lib/dotjs/format.js | 149 + .../node_modules/ajv/lib/dotjs/items.js | 140 + .../node_modules/ajv/lib/dotjs/multipleOf.js | 76 + .../node_modules/ajv/lib/dotjs/not.js | 83 + .../node_modules/ajv/lib/dotjs/oneOf.js | 70 + .../node_modules/ajv/lib/dotjs/pattern.js | 74 + .../node_modules/ajv/lib/dotjs/properties.js | 468 ++ .../ajv/lib/dotjs/propertyNames.js | 81 + .../node_modules/ajv/lib/dotjs/ref.js | 123 + 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src/js-validator/test-json/test-donor.json create mode 100644 src/js-validator/test-json/test-sample.json create mode 100644 src/js-validator/test/validate_json.js diff --git a/json_schema/assay.json b/json_schema/assay.json index e5e3617ed..3fdaac50e 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "An assay contains Information relevant to how RNA expression levels were assayed or otherwise the sample was converted into digital information", diff --git a/json_schema/barcode.json b/json_schema/barcode.json index ce54f3fcb..035b69b8c 100644 --- a/json_schema/barcode.json +++ b/json_schema/barcode.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "This object describes where a particular type of barcode is in a read", "properties": { diff --git a/json_schema/cell_line.json b/json_schema/cell_line.json index 2148becdc..7a7629744 100644 --- a/json_schema/cell_line.json +++ b/json_schema/cell_line.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "Information about the cell line used in the sample", "properties": { @@ -17,7 +17,7 @@ }, "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", - "$ref": "cell_type_ontology.json" + "$ref": "ontology_json/cell_type_ontology.json" }, "date_established": { "description": "when was the cell line established", @@ -30,7 +30,7 @@ }, "disease": { "description": "text describing disease association, preferable a disease found in EFO", - "$ref": "disease_ontology.json" + "$ref": "ontology_json/disease_ontology.json" }, "karyotype": { "description": "the karyotype of the cell line", diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 2d85b8f8e..facafa28d 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "", "properties": { "sample_type": { @@ -9,7 +9,7 @@ "target_cell_type": { "description" : "cell types present in suspension", "type": "array", - "items": {"$ref": "cell_type_ontology.json" } + "items": {"$ref": "ontology_json/cell_type_ontology.json" } }, "enrichment": { "description": "How cells were enriched for specific type or to weed out common types after disassociation.", diff --git a/json_schema/contact.json b/json_schema/contact.json index f953295ed..ae7a2b661 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "contact schema generate by tagSchemaToJson from contact", diff --git a/json_schema/core.json b/json_schema/core.json index 248571130..e7dd13692 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "core object found in all modules", "properties": { diff --git a/json_schema/death.json b/json_schema/death.json index 5c57aaeeb..c651f7b1a 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "death schema generate by tagSchemaToJson from death", diff --git a/json_schema/donor.json b/json_schema/donor.json index 687d10f6d..b0b0c411e 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "donor schema generate by tagSchemaToJson from donor", "properties": { @@ -51,7 +51,7 @@ "description": "Short description of disease status of individual.", "type": "array", "items": { - "$ref": "disease_ontology.json" + "$ref": "ontology_json/disease_ontology.json" } }, "genotype": { diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index e4ad1415a..728e44523 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "enrichment schema generate by tagSchemaToJson from enrichment", "additionalProperties": false, "properties": { diff --git a/json_schema/imaging.json b/json_schema/imaging.json index 4b8fcb1e1..5ed833414 100644 --- a/json_schema/imaging.json +++ b/json_schema/imaging.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "imaging schema generate by tagSchemaToJson from imaging", diff --git a/json_schema/ingest.json b/json_schema/ingest.json index f5c43ee62..f7b24b9cb 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "Information added or generated at ingest time." , "properties": { diff --git a/json_schema/ontology.json b/json_schema/ontology.json index dc7075f63..75ef3e87a 100644 --- a/json_schema/ontology.json +++ b/json_schema/ontology.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "A term that may be associated with an ontology term", "properties": { diff --git a/json_schema/organoid.json b/json_schema/organoid.json index 2dcbff898..f4a50d668 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "A description of an organoid sample.", "properties": { "sample_type": { diff --git a/json_schema/project.json b/json_schema/project.json index 8ae2fc34e..32e00fd80 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "project schema generate by tagSchemaToJson from project", diff --git a/json_schema/protocol.json b/json_schema/protocol.json index c2aaca16a..7c0d15f79 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "protocol schema generate by tagSchemaToJson from protocol", diff --git a/json_schema/publication.json b/json_schema/publication.json index 309f0863b..5161fbc59 100644 --- a/json_schema/publication.json +++ b/json_schema/publication.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "A publication contains information about a journal article, book, web page or other external available documentation on a project", "properties": { diff --git a/json_schema/rna.json b/json_schema/rna.json index 819e4ed03..316881b89 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", diff --git a/json_schema/sample.json b/json_schema/sample.json index 33f0f5c13..e76a29cbf 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "required": ["details", "core", "id"], "description": "Information about a biosample." , diff --git a/json_schema/sample_from_organism.json b/json_schema/sample_from_organism.json index bbc247f0a..d4eeef96e 100644 --- a/json_schema/sample_from_organism.json +++ b/json_schema/sample_from_organism.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", "title": "sample from organism", @@ -10,7 +10,7 @@ "enum": ["sample from organism"] }, "body_part": { - "$ref": "body_part_ontology.json", + "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, "organ": { diff --git a/json_schema/seq.json b/json_schema/seq.json index 94ad8b7c4..787636492 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": { "lanes": { diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 017aafead..3e98ff0fd 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "Contains information on single cell aspects of an assay.", "properties": { diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index f7ddb9d6f..4e2a0458f 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, "description": "State of body part at collection and how it was preserved after removal and/or cell enrichment", diff --git a/json_schema/submission.json b/json_schema/submission.json index 4ca5edbd1..d9109fb5f 100644 --- a/json_schema/submission.json +++ b/json_schema/submission.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions" : { "transfer_service_version" : { diff --git a/json_schema/well.json b/json_schema/well.json index 11346bfa5..9497f2588 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { diff --git a/src/js-validator/node_modules/ajv/.tonic_example.js b/src/js-validator/node_modules/ajv/.tonic_example.js new file mode 100644 index 000000000..aa11812d8 --- /dev/null +++ b/src/js-validator/node_modules/ajv/.tonic_example.js @@ -0,0 +1,20 @@ +var Ajv = require('ajv'); +var ajv = new Ajv({allErrors: true}); + +var schema = { + "properties": { + "foo": { "type": "string" }, + "bar": { "type": "number", "maximum": 3 } + } +}; + +var validate = ajv.compile(schema); + +test({"foo": "abc", "bar": 2}); +test({"foo": 2, "bar": 4}); + +function test(data) { + var valid = validate(data); + if (valid) console.log('Valid!'); + else console.log('Invalid: ' + ajv.errorsText(validate.errors)); +} \ No newline at end of file diff --git a/src/js-validator/node_modules/ajv/LICENSE b/src/js-validator/node_modules/ajv/LICENSE new file mode 100644 index 000000000..810539685 --- /dev/null +++ b/src/js-validator/node_modules/ajv/LICENSE @@ -0,0 +1,22 @@ +The MIT License (MIT) + +Copyright (c) 2015 Evgeny Poberezkin + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + diff --git a/src/js-validator/node_modules/ajv/README.md b/src/js-validator/node_modules/ajv/README.md new file mode 100644 index 000000000..384825cde --- /dev/null +++ b/src/js-validator/node_modules/ajv/README.md @@ -0,0 +1,1302 @@ +Ajv logo + +# Ajv: Another JSON Schema Validator + +The fastest JSON Schema validator for Node.js and browser with draft 6 support. + + +[![Build Status](https://travis-ci.org/epoberezkin/ajv.svg?branch=master)](https://travis-ci.org/epoberezkin/ajv) +[![npm version](https://badge.fury.io/js/ajv.svg)](https://www.npmjs.com/package/ajv) +[![npm downloads](https://img.shields.io/npm/dm/ajv.svg)](https://www.npmjs.com/package/ajv) +[![Code Climate](https://codeclimate.com/github/epoberezkin/ajv/badges/gpa.svg)](https://codeclimate.com/github/epoberezkin/ajv) +[![Coverage Status](https://coveralls.io/repos/epoberezkin/ajv/badge.svg?branch=master&service=github)](https://coveralls.io/github/epoberezkin/ajv?branch=master) +[![Greenkeeper badge](https://badges.greenkeeper.io/epoberezkin/ajv.svg)](https://greenkeeper.io/) +[![Gitter](https://img.shields.io/gitter/room/ajv-validator/ajv.svg)](https://gitter.im/ajv-validator/ajv) + + +## Using version 5 + +[JSON Schema draft-06](https://trac.tools.ietf.org/html/draft-wright-json-schema-validation-01) is published. + +[Ajv version 5.0.0](https://github.com/epoberezkin/ajv/releases/tag/5.0.0) that supports draft-06 is released. It may require either migrating your schemas or updating your code (to continue using draft-04 and v5 schemas). + +__Please note__: To use Ajv with draft-04 schemas you need to explicitly add meta-schema to the validator instance: + +```javascript +ajv.addMetaSchema(require('ajv/lib/refs/json-schema-draft-04.json')); +``` + + +## Contents + +- [Performance](#performance) +- [Features](#features) +- [Getting started](#getting-started) +- [Frequently Asked Questions](https://github.com/epoberezkin/ajv/blob/master/FAQ.md) +- [Using in browser](#using-in-browser) +- [Command line interface](#command-line-interface) +- Validation + - [Keywords](#validation-keywords) + - [Formats](#formats) + - [Combining schemas with $ref](#ref) + - [$data reference](#data-reference) + - NEW: [$merge and $patch keywords](#merge-and-patch-keywords) + - [Defining custom keywords](#defining-custom-keywords) + - [Asynchronous schema compilation](#asynchronous-schema-compilation) + - [Asynchronous validation](#asynchronous-validation) +- Modifying data during validation + - [Filtering data](#filtering-data) + - [Assigning defaults](#assigning-defaults) + - [Coercing data types](#coercing-data-types) +- API + - [Methods](#api) + - [Options](#options) + - [Validation errors](#validation-errors) +- [Related packages](#related-packages) +- [Packages using Ajv](#some-packages-using-ajv) +- [Tests, Contributing, History, License](#tests) + + +## Performance + +Ajv generates code using [doT templates](https://github.com/olado/doT) to turn JSON schemas into super-fast validation functions that are efficient for v8 optimization. + +Currently Ajv is the fastest and the most standard compliant validator according to these benchmarks: + +- [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark) - 50% faster than the second place +- [jsck benchmark](https://github.com/pandastrike/jsck#benchmarks) - 20-190% faster +- [z-schema benchmark](https://rawgit.com/zaggino/z-schema/master/benchmark/results.html) +- [themis benchmark](https://cdn.rawgit.com/playlyfe/themis/master/benchmark/results.html) + + +Performance of different validators by [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark): + +[![performance](https://chart.googleapis.com/chart?chxt=x,y&cht=bhs&chco=76A4FB&chls=2.0&chbh=32,4,1&chs=600x416&chxl=-1:%7Cajv%7Cis-my-json-valid%7Cjsen%7Cschemasaurus%7Cthemis%7Cz-schema%7Cjsck%7Cjsonschema%7Cskeemas%7Ctv4%7Cjayschema&chd=t:100,68,61,22.8,17.6,6.6,2.7,0.9,0.7,0.4,0.1)](https://github.com/ebdrup/json-schema-benchmark/blob/master/README.md#performance) + + +## Features + +- Ajv implements full JSON Schema [draft 6](http://json-schema.org/) and draft 4 standards: + - all validation keywords (see [JSON Schema validation keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md)) + - full support of remote refs (remote schemas have to be added with `addSchema` or compiled to be available) + - support of circular references between schemas + - correct string lengths for strings with unicode pairs (can be turned off) + - [formats](#formats) defined by JSON Schema draft 4 standard and custom formats (can be turned off) + - [validates schemas against meta-schema](#api-validateschema) +- supports [browsers](#using-in-browser) and Node.js 0.10-8.x +- [asynchronous loading](#asynchronous-schema-compilation) of referenced schemas during compilation +- "All errors" validation mode with [option allErrors](#options) +- [error messages with parameters](#validation-errors) describing error reasons to allow creating custom error messages +- i18n error messages support with [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) package +- [filtering data](#filtering-data) from additional properties +- [assigning defaults](#assigning-defaults) to missing properties and items +- [coercing data](#coercing-data-types) to the types specified in `type` keywords +- [custom keywords](#defining-custom-keywords) +- draft-6 keywords `const`, `contains` and `propertyNames` +- draft-6 boolean schemas (`true`/`false` as a schema to always pass/fail). +- keywords `switch`, `patternRequired`, `formatMaximum` / `formatMinimum` and `formatExclusiveMaximum` / `formatExclusiveMinimum` from [JSON-schema extension proposals](https://github.com/json-schema/json-schema/wiki/v5-Proposals) with [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package +- [$data reference](#data-reference) to use values from the validated data as values for the schema keywords +- [asynchronous validation](#asynchronous-validation) of custom formats and keywords + +Currently Ajv is the only validator that passes all the tests from [JSON Schema Test Suite](https://github.com/json-schema/JSON-Schema-Test-Suite) (according to [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark), apart from the test that requires that `1.0` is not an integer that is impossible to satisfy in JavaScript). + + +## Install + +``` +npm install ajv +``` + + +## Getting started + +Try it in the Node.js REPL: https://tonicdev.com/npm/ajv + + +The fastest validation call: + +```javascript +var Ajv = require('ajv'); +var ajv = new Ajv(); // options can be passed, e.g. {allErrors: true} +var validate = ajv.compile(schema); +var valid = validate(data); +if (!valid) console.log(validate.errors); +``` + +or with less code + +```javascript +// ... +var valid = ajv.validate(schema, data); +if (!valid) console.log(ajv.errors); +// ... +``` + +or + +```javascript +// ... +ajv.addSchema(schema, 'mySchema'); +var valid = ajv.validate('mySchema', data); +if (!valid) console.log(ajv.errorsText()); +// ... +``` + +See [API](#api) and [Options](#options) for more details. + +Ajv compiles schemas to functions and caches them in all cases (using schema serialized with [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) or a custom function as a key), so that the next time the same schema is used (not necessarily the same object instance) it won't be compiled again. + +The best performance is achieved when using compiled functions returned by `compile` or `getSchema` methods (there is no additional function call). + +__Please note__: every time a validation function or `ajv.validate` are called `errors` property is overwritten. You need to copy `errors` array reference to another variable if you want to use it later (e.g., in the callback). See [Validation errors](#validation-errors) + + +## Using in browser + +You can require Ajv directly from the code you browserify - in this case Ajv will be a part of your bundle. + +If you need to use Ajv in several bundles you can create a separate UMD bundle using `npm run bundle` script (thanks to [siddo420](https://github.com/siddo420)). + +Then you need to load Ajv in the browser: +```html + +``` + +This bundle can be used with different module systems; it creates global `Ajv` if no module system is found. + +The browser bundle is available on [cdnjs](https://cdnjs.com/libraries/ajv). + +Ajv is tested with these browsers: + +[![Sauce Test Status](https://saucelabs.com/browser-matrix/epoberezkin.svg)](https://saucelabs.com/u/epoberezkin) + +__Please note__: some frameworks, e.g. Dojo, may redefine global require in such way that is not compatible with CommonJS module format. In such case Ajv bundle has to be loaded before the framework and then you can use global Ajv (see issue [#234](https://github.com/epoberezkin/ajv/issues/234)). + + +## Command line interface + +CLI is available as a separate npm package [ajv-cli](https://github.com/jessedc/ajv-cli). It supports: + +- compiling JSON-schemas to test their validity +- BETA: generating standalone module exporting a validation function to be used without Ajv (using [ajv-pack](https://github.com/epoberezkin/ajv-pack)) +- migrate schemas to draft-06 (using [json-schema-migrate](https://github.com/epoberezkin/json-schema-migrate)) +- validating data file(s) against JSON-schema +- testing expected validity of data against JSON-schema +- referenced schemas +- custom meta-schemas +- files in JSON and JavaScript format +- all Ajv options +- reporting changes in data after validation in [JSON-patch](https://tools.ietf.org/html/rfc6902) format + + +## Validation keywords + +Ajv supports all validation keywords from draft 4 of JSON-schema standard: + +- [type](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#type) +- [for numbers](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-numbers) - maximum, minimum, exclusiveMaximum, exclusiveMinimum, multipleOf +- [for strings](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-strings) - maxLength, minLength, pattern, format +- [for arrays](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-arrays) - maxItems, minItems, uniqueItems, items, additionalItems, [contains](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#contains) +- [for objects](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-objects) - maxProperties, minProperties, required, properties, patternProperties, additionalProperties, dependencies, [propertyNames](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#propertynames) +- [for all types](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-all-types) - enum, [const](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#const) +- [compound keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#compound-keywords) - not, oneOf, anyOf, allOf + +With [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package Ajv also supports validation keywords from [JSON Schema extension proposals](https://github.com/json-schema/json-schema/wiki/v5-Proposals) for JSON-schema standard: + +- [switch](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#switch-proposed) - conditional validation with a sequence of if/then clauses +- [patternRequired](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#patternrequired-proposed) - like `required` but with patterns that some property should match. +- [formatMaximum, formatMinimum, formatExclusiveMaximum, formatExclusiveMinimum](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#formatmaximum--formatminimum-and-exclusiveformatmaximum--exclusiveformatminimum-proposed) - setting limits for date, time, etc. + +See [JSON Schema validation keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md) for more details. + + +## Formats + +The following formats are supported for string validation with "format" keyword: + +- _date_: full-date according to [RFC3339](http://tools.ietf.org/html/rfc3339#section-5.6). +- _time_: time with optional time-zone. +- _date-time_: date-time from the same source (time-zone is mandatory). `date`, `time` and `date-time` validate ranges in `full` mode and only regexp in `fast` mode (see [options](#options)). +- _uri_: full uri with optional protocol. +- _url_: [URL record](https://url.spec.whatwg.org/#concept-url). +- _uri-template_: URI template according to [RFC6570](https://tools.ietf.org/html/rfc6570) +- _email_: email address. +- _hostname_: host name according to [RFC1034](http://tools.ietf.org/html/rfc1034#section-3.5). +- _ipv4_: IP address v4. +- _ipv6_: IP address v6. +- _regex_: tests whether a string is a valid regular expression by passing it to RegExp constructor. +- _uuid_: Universally Unique IDentifier according to [RFC4122](http://tools.ietf.org/html/rfc4122). +- _json-pointer_: JSON-pointer according to [RFC6901](https://tools.ietf.org/html/rfc6901). +- _relative-json-pointer_: relative JSON-pointer according to [this draft](http://tools.ietf.org/html/draft-luff-relative-json-pointer-00). + +There are two modes of format validation: `fast` and `full`. This mode affects formats `date`, `time`, `date-time`, `uri`, `email`, and `hostname`. See [Options](#options) for details. + +You can add additional formats and replace any of the formats above using [addFormat](#api-addformat) method. + +The option `unknownFormats` allows changing the default behaviour when an unknown format is encountered. In this case Ajv can either fail schema compilation (default) or ignore it (default in versions before 5.0.0). You also can whitelist specific format(s) to be ignored. See [Options](#options) for details. + +You can find patterns used for format validation and the sources that were used in [formats.js](https://github.com/epoberezkin/ajv/blob/master/lib/compile/formats.js). + + +## Combining schemas with $ref + +You can structure your validation logic across multiple schema files and have schemas reference each other using `$ref` keyword. + +Example: + +```javascript +var schema = { + "$id": "http://example.com/schemas/schema.json", + "type": "object", + "properties": { + "foo": { "$ref": "defs.json#/definitions/int" }, + "bar": { "$ref": "defs.json#/definitions/str" } + } +}; + +var defsSchema = { + "$id": "http://example.com/schemas/defs.json", + "definitions": { + "int": { "type": "integer" }, + "str": { "type": "string" } + } +}; +``` + +Now to compile your schema you can either pass all schemas to Ajv instance: + +```javascript +var ajv = new Ajv({schemas: [schema, defsSchema]}); +var validate = ajv.getSchema('http://example.com/schemas/schema.json'); +``` + +or use `addSchema` method: + +```javascript +var ajv = new Ajv; +ajv.addSchema(defsSchema); +var validate = ajv.compile(schema); +``` + +See [Options](#options) and [addSchema](#api) method. + +__Please note__: +- `$ref` is resolved as the uri-reference using schema $id as the base URI (see the example). +- References can be recursive (and mutually recursive) to implement the schemas for different data structures (such as linked lists, trees, graphs, etc.). +- You don't have to host your schema files at the URIs that you use as schema $id. These URIs are only used to identify the schemas, and according to JSON Schema specification validators should not expect to be able to download the schemas from these URIs. +- The actual location of the schema file in the file system is not used. +- You can pass the identifier of the schema as the second parameter of `addSchema` method or as a property name in `schemas` option. This identifier can be used instead of (or in addition to) schema $id. +- You cannot have the same $id (or the schema identifier) used for more than one schema - the exception will be thrown. +- You can implement dynamic resolution of the referenced schemas using `compileAsync` method. In this way you can store schemas in any system (files, web, database, etc.) and reference them without explicitly adding to Ajv instance. See [Asynchronous schema compilation](#asynchronous-schema-compilation). + + +## $data reference + +With `$data` option you can use values from the validated data as the values for the schema keywords. See [proposal](https://github.com/json-schema/json-schema/wiki/$data-(v5-proposal)) for more information about how it works. + +`$data` reference is supported in the keywords: const, enum, format, maximum/minimum, exclusiveMaximum / exclusiveMinimum, maxLength / minLength, maxItems / minItems, maxProperties / minProperties, formatMaximum / formatMinimum, formatExclusiveMaximum / formatExclusiveMinimum, multipleOf, pattern, required, uniqueItems. + +The value of "$data" should be a [JSON-pointer](https://tools.ietf.org/html/rfc6901) to the data (the root is always the top level data object, even if the $data reference is inside a referenced subschema) or a [relative JSON-pointer](http://tools.ietf.org/html/draft-luff-relative-json-pointer-00) (it is relative to the current point in data; if the $data reference is inside a referenced subschema it cannot point to the data outside of the root level for this subschema). + +Examples. + +This schema requires that the value in property `smaller` is less or equal than the value in the property larger: + +```javascript +var ajv = new Ajv({$data: true}); + +var schema = { + "properties": { + "smaller": { + "type": "number", + "maximum": { "$data": "1/larger" } + }, + "larger": { "type": "number" } + } +}; + +var validData = { + smaller: 5, + larger: 7 +}; + +ajv.validate(schema, validData); // true +``` + +This schema requires that the properties have the same format as their field names: + +```javascript +var schema = { + "additionalProperties": { + "type": "string", + "format": { "$data": "0#" } + } +}; + +var validData = { + 'date-time': '1963-06-19T08:30:06.283185Z', + email: 'joe.bloggs@example.com' +} +``` + +`$data` reference is resolved safely - it won't throw even if some property is undefined. If `$data` resolves to `undefined` the validation succeeds (with the exclusion of `const` keyword). If `$data` resolves to incorrect type (e.g. not "number" for maximum keyword) the validation fails. + + +## $merge and $patch keywords + +With the package [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) you can use the keywords `$merge` and `$patch` that allow extending JSON-schemas with patches using formats [JSON Merge Patch (RFC 7396)](https://tools.ietf.org/html/rfc7396) and [JSON Patch (RFC 6902)](https://tools.ietf.org/html/rfc6902). + +To add keywords `$merge` and `$patch` to Ajv instance use this code: + +```javascript +require('ajv-merge-patch')(ajv); +``` + +Examples. + +Using `$merge`: + +```json +{ + "$merge": { + "source": { + "type": "object", + "properties": { "p": { "type": "string" } }, + "additionalProperties": false + }, + "with": { + "properties": { "q": { "type": "number" } } + } + } +} +``` + +Using `$patch`: + +```json +{ + "$patch": { + "source": { + "type": "object", + "properties": { "p": { "type": "string" } }, + "additionalProperties": false + }, + "with": [ + { "op": "add", "path": "/properties/q", "value": { "type": "number" } } + ] + } +} +``` + +The schemas above are equivalent to this schema: + +```json +{ + "type": "object", + "properties": { + "p": { "type": "string" }, + "q": { "type": "number" } + }, + "additionalProperties": false +} +``` + +The properties `source` and `with` in the keywords `$merge` and `$patch` can use absolute or relative `$ref` to point to other schemas previously added to the Ajv instance or to the fragments of the current schema. + +See the package [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) for more information. + + +## Defining custom keywords + +The advantages of using custom keywords are: + +- allow creating validation scenarios that cannot be expressed using JSON Schema +- simplify your schemas +- help bringing a bigger part of the validation logic to your schemas +- make your schemas more expressive, less verbose and closer to your application domain +- implement custom data processors that modify your data (`modifying` option MUST be used in keyword definition) and/or create side effects while the data is being validated + +If a keyword is used only for side-effects and its validation result is pre-defined, use option `valid: true/false` in keyword definition to simplify both generated code (no error handling in case of `valid: true`) and your keyword functions (no need to return any validation result). + +The concerns you have to be aware of when extending JSON-schema standard with custom keywords are the portability and understanding of your schemas. You will have to support these custom keywords on other platforms and to properly document these keywords so that everybody can understand them in your schemas. + +You can define custom keywords with [addKeyword](#api-addkeyword) method. Keywords are defined on the `ajv` instance level - new instances will not have previously defined keywords. + +Ajv allows defining keywords with: +- validation function +- compilation function +- macro function +- inline compilation function that should return code (as string) that will be inlined in the currently compiled schema. + +Example. `range` and `exclusiveRange` keywords using compiled schema: + +```javascript +ajv.addKeyword('range', { type: 'number', compile: function (sch, parentSchema) { + var min = sch[0]; + var max = sch[1]; + + return parentSchema.exclusiveRange === true + ? function (data) { return data > min && data < max; } + : function (data) { return data >= min && data <= max; } +} }); + +var schema = { "range": [2, 4], "exclusiveRange": true }; +var validate = ajv.compile(schema); +console.log(validate(2.01)); // true +console.log(validate(3.99)); // true +console.log(validate(2)); // false +console.log(validate(4)); // false +``` + +Several custom keywords (typeof, instanceof, range and propertyNames) are defined in [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package - they can be used for your schemas and as a starting point for your own custom keywords. + +See [Defining custom keywords](https://github.com/epoberezkin/ajv/blob/master/CUSTOM.md) for more details. + + +## Asynchronous schema compilation + +During asynchronous compilation remote references are loaded using supplied function. See `compileAsync` [method](#api-compileAsync) and `loadSchema` [option](#options). + +Example: + +```javascript +var ajv = new Ajv({ loadSchema: loadSchema }); + +ajv.compileAsync(schema).then(function (validate) { + var valid = validate(data); + // ... +}); + +function loadSchema(uri) { + return request.json(uri).then(function (res) { + if (res.statusCode >= 400) + throw new Error('Loading error: ' + res.statusCode); + return res.body; + }); +} +``` + +__Please note__: [Option](#options) `missingRefs` should NOT be set to `"ignore"` or `"fail"` for asynchronous compilation to work. + + +## Asynchronous validation + +Example in Node.js REPL: https://tonicdev.com/esp/ajv-asynchronous-validation + +You can define custom formats and keywords that perform validation asynchronously by accessing database or some other service. You should add `async: true` in the keyword or format definition (see [addFormat](#api-addformat), [addKeyword](#api-addkeyword) and [Defining custom keywords](#defining-custom-keywords)). + +If your schema uses asynchronous formats/keywords or refers to some schema that contains them it should have `"$async": true` keyword so that Ajv can compile it correctly. If asynchronous format/keyword or reference to asynchronous schema is used in the schema without `$async` keyword Ajv will throw an exception during schema compilation. + +__Please note__: all asynchronous subschemas that are referenced from the current or other schemas should have `"$async": true` keyword as well, otherwise the schema compilation will fail. + +Validation function for an asynchronous custom format/keyword should return a promise that resolves with `true` or `false` (or rejects with `new Ajv.ValidationError(errors)` if you want to return custom errors from the keyword function). Ajv compiles asynchronous schemas to either [es7 async functions](http://tc39.github.io/ecmascript-asyncawait/) that can optionally be transpiled with [nodent](https://github.com/MatAtBread/nodent) or with [regenerator](https://github.com/facebook/regenerator) or to [generator functions](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Statements/function*) that can be optionally transpiled with regenerator as well. You can also supply any other transpiler as a function. See [Options](#options). + +The compiled validation function has `$async: true` property (if the schema is asynchronous), so you can differentiate these functions if you are using both synchronous and asynchronous schemas. + +If you are using generators, the compiled validation function can be either wrapped with [co](https://github.com/tj/co) (default) or returned as generator function, that can be used directly, e.g. in [koa](http://koajs.com/) 1.0. `co` is a small library, it is included in Ajv (both as npm dependency and in the browser bundle). + +Async functions are currently supported in Chrome 55, Firefox 52, Node.js 7 (with --harmony-async-await) and MS Edge 13 (with flag). + +Generator functions are currently supported in Chrome, Firefox and Node.js. + +If you are using Ajv in other browsers or in older versions of Node.js you should use one of available transpiling options. All provided async modes use global Promise class. If your platform does not have Promise you should use a polyfill that defines it. + +Validation result will be a promise that resolves with validated data or rejects with an exception `Ajv.ValidationError` that contains the array of validation errors in `errors` property. + + +Example: + +```javascript +/** + * Default mode is non-transpiled generator function wrapped with `co`. + * Using package ajv-async (https://github.com/epoberezkin/ajv-async) + * you can auto-detect the best async mode. + * In this case, without "async" and "transpile" options + * (or with option {async: true}) + * Ajv will choose the first supported/installed option in this order: + * 1. native async function + * 2. native generator function wrapped with co + * 3. es7 async functions transpiled with nodent + * 4. es7 async functions transpiled with regenerator + */ + +var setupAsync = require('ajv-async'); +var ajv = setupAsync(new Ajv); + +ajv.addKeyword('idExists', { + async: true, + type: 'number', + validate: checkIdExists +}); + + +function checkIdExists(schema, data) { + return knex(schema.table) + .select('id') + .where('id', data) + .then(function (rows) { + return !!rows.length; // true if record is found + }); +} + +var schema = { + "$async": true, + "properties": { + "userId": { + "type": "integer", + "idExists": { "table": "users" } + }, + "postId": { + "type": "integer", + "idExists": { "table": "posts" } + } + } +}; + +var validate = ajv.compile(schema); + +validate({ userId: 1, postId: 19 }) +.then(function (data) { + console.log('Data is valid', data); // { userId: 1, postId: 19 } +}) +.catch(function (err) { + if (!(err instanceof Ajv.ValidationError)) throw err; + // data is invalid + console.log('Validation errors:', err.errors); +}); +``` + +### Using transpilers with asynchronous validation functions. + +To use a transpiler you should separately install it (or load its bundle in the browser). + +Ajv npm package includes minified browser bundles of regenerator and nodent in dist folder. + + +#### Using nodent + +```javascript +var setupAsync = require('ajv-async'); +var ajv = new Ajv({ /* async: 'es7', */ transpile: 'nodent' }); +setupAsync(ajv); +var validate = ajv.compile(schema); // transpiled es7 async function +validate(data).then(successFunc).catch(errorFunc); +``` + +`npm install nodent` or use `nodent.min.js` from dist folder of npm package. + + +#### Using regenerator + +```javascript +var setupAsync = require('ajv-async'); +var ajv = new Ajv({ /* async: 'es7', */ transpile: 'regenerator' }); +setupAsync(ajv); +var validate = ajv.compile(schema); // transpiled es7 async function +validate(data).then(successFunc).catch(errorFunc); +``` + +`npm install regenerator` or use `regenerator.min.js` from dist folder of npm package. + + +#### Using other transpilers + +```javascript +var ajv = new Ajv({ async: 'es7', processCode: transpileFunc }); +var validate = ajv.compile(schema); // transpiled es7 async function +validate(data).then(successFunc).catch(errorFunc); +``` + +See [Options](#options). + + +#### Comparison of async modes + +|mode|transpile
speed*|run-time
speed*|bundle
size| +|---|:-:|:-:|:-:| +|es7 async
(native)|-|0.75|-| +|generators
(native)|-|1.0|-| +|es7.nodent|1.35|1.1|215Kb| +|es7.regenerator|1.0|2.7|1109Kb| +|regenerator|1.0|3.2|1109Kb| + +\* Relative performance in Node.js 7.x — smaller is better. + +[nodent](https://github.com/MatAtBread/nodent) has several advantages: + +- much smaller browser bundle than regenerator +- almost the same performance of generated code as native generators in Node.js and the latest Chrome +- much better performance than native generators in other browsers +- works in IE 9 (regenerator does not) + + +## Filtering data + +With [option `removeAdditional`](#options) (added by [andyscott](https://github.com/andyscott)) you can filter data during the validation. + +This option modifies original data. + +Example: + +```javascript +var ajv = new Ajv({ removeAdditional: true }); +var schema = { + "additionalProperties": false, + "properties": { + "foo": { "type": "number" }, + "bar": { + "additionalProperties": { "type": "number" }, + "properties": { + "baz": { "type": "string" } + } + } + } +} + +var data = { + "foo": 0, + "additional1": 1, // will be removed; `additionalProperties` == false + "bar": { + "baz": "abc", + "additional2": 2 // will NOT be removed; `additionalProperties` != false + }, +} + +var validate = ajv.compile(schema); + +console.log(validate(data)); // true +console.log(data); // { "foo": 0, "bar": { "baz": "abc", "additional2": 2 } +``` + +If `removeAdditional` option in the example above were `"all"` then both `additional1` and `additional2` properties would have been removed. + +If the option were `"failing"` then property `additional1` would have been removed regardless of its value and property `additional2` would have been removed only if its value were failing the schema in the inner `additionalProperties` (so in the example above it would have stayed because it passes the schema, but any non-number would have been removed). + +__Please note__: If you use `removeAdditional` option with `additionalProperties` keyword inside `anyOf`/`oneOf` keywords your validation can fail with this schema, for example: + +```json +{ + "type": "object", + "oneOf": [ + { + "properties": { + "foo": { "type": "string" } + }, + "required": [ "foo" ], + "additionalProperties": false + }, + { + "properties": { + "bar": { "type": "integer" } + }, + "required": [ "bar" ], + "additionalProperties": false + } + ] +} +``` + +The intention of the schema above is to allow objects with either the string property "foo" or the integer property "bar", but not with both and not with any other properties. + +With the option `removeAdditional: true` the validation will pass for the object `{ "foo": "abc"}` but will fail for the object `{"bar": 1}`. It happens because while the first subschema in `oneOf` is validated, the property `bar` is removed because it is an additional property according to the standard (because it is not included in `properties` keyword in the same schema). + +While this behaviour is unexpected (issues [#129](https://github.com/epoberezkin/ajv/issues/129), [#134](https://github.com/epoberezkin/ajv/issues/134)), it is correct. To have the expected behaviour (both objects are allowed and additional properties are removed) the schema has to be refactored in this way: + +```json +{ + "type": "object", + "properties": { + "foo": { "type": "string" }, + "bar": { "type": "integer" } + }, + "additionalProperties": false, + "oneOf": [ + { "required": [ "foo" ] }, + { "required": [ "bar" ] } + ] +} +``` + +The schema above is also more efficient - it will compile into a faster function. + + +## Assigning defaults + +With [option `useDefaults`](#options) Ajv will assign values from `default` keyword in the schemas of `properties` and `items` (when it is the array of schemas) to the missing properties and items. + +This option modifies original data. + +__Please note__: by default the default value is inserted in the generated validation code as a literal (starting from v4.0), so the value inserted in the data will be the deep clone of the default in the schema. + +If you need to insert the default value in the data by reference pass the option `useDefaults: "shared"`. + +Inserting defaults by reference can be faster (in case you have an object in `default`) and it allows to have dynamic values in defaults, e.g. timestamp, without recompiling the schema. The side effect is that modifying the default value in any validated data instance will change the default in the schema and in other validated data instances. See example 3 below. + + +Example 1 (`default` in `properties`): + +```javascript +var ajv = new Ajv({ useDefaults: true }); +var schema = { + "type": "object", + "properties": { + "foo": { "type": "number" }, + "bar": { "type": "string", "default": "baz" } + }, + "required": [ "foo", "bar" ] +}; + +var data = { "foo": 1 }; + +var validate = ajv.compile(schema); + +console.log(validate(data)); // true +console.log(data); // { "foo": 1, "bar": "baz" } +``` + +Example 2 (`default` in `items`): + +```javascript +var schema = { + "type": "array", + "items": [ + { "type": "number" }, + { "type": "string", "default": "foo" } + ] +} + +var data = [ 1 ]; + +var validate = ajv.compile(schema); + +console.log(validate(data)); // true +console.log(data); // [ 1, "foo" ] +``` + +Example 3 (inserting "defaults" by reference): + +```javascript +var ajv = new Ajv({ useDefaults: 'shared' }); + +var schema = { + properties: { + foo: { + default: { bar: 1 } + } + } +} + +var validate = ajv.compile(schema); + +var data = {}; +console.log(validate(data)); // true +console.log(data); // { foo: { bar: 1 } } + +data.foo.bar = 2; + +var data2 = {}; +console.log(validate(data2)); // true +console.log(data2); // { foo: { bar: 2 } } +``` + +`default` keywords in other cases are ignored: + +- not in `properties` or `items` subschemas +- in schemas inside `anyOf`, `oneOf` and `not` (see [#42](https://github.com/epoberezkin/ajv/issues/42)) +- in `if` subschema of `switch` keyword +- in schemas generated by custom macro keywords + + +## Coercing data types + +When you are validating user inputs all your data properties are usually strings. The option `coerceTypes` allows you to have your data types coerced to the types specified in your schema `type` keywords, both to pass the validation and to use the correctly typed data afterwards. + +This option modifies original data. + +__Please note__: if you pass a scalar value to the validating function its type will be coerced and it will pass the validation, but the value of the variable you pass won't be updated because scalars are passed by value. + + +Example 1: + +```javascript +var ajv = new Ajv({ coerceTypes: true }); +var schema = { + "type": "object", + "properties": { + "foo": { "type": "number" }, + "bar": { "type": "boolean" } + }, + "required": [ "foo", "bar" ] +}; + +var data = { "foo": "1", "bar": "false" }; + +var validate = ajv.compile(schema); + +console.log(validate(data)); // true +console.log(data); // { "foo": 1, "bar": false } +``` + +Example 2 (array coercions): + +```javascript +var ajv = new Ajv({ coerceTypes: 'array' }); +var schema = { + "properties": { + "foo": { "type": "array", "items": { "type": "number" } }, + "bar": { "type": "boolean" } + } +}; + +var data = { "foo": "1", "bar": ["false"] }; + +var validate = ajv.compile(schema); + +console.log(validate(data)); // true +console.log(data); // { "foo": [1], "bar": false } +``` + +The coercion rules, as you can see from the example, are different from JavaScript both to validate user input as expected and to have the coercion reversible (to correctly validate cases where different types are defined in subschemas of "anyOf" and other compound keywords). + +See [Coercion rules](https://github.com/epoberezkin/ajv/blob/master/COERCION.md) for details. + + +## API + +##### new Ajv(Object options) -> Object + +Create Ajv instance. + + +##### .compile(Object schema) -> Function<Object data> + +Generate validating function and cache the compiled schema for future use. + +Validating function returns boolean and has properties `errors` with the errors from the last validation (`null` if there were no errors) and `schema` with the reference to the original schema. + +Unless the option `validateSchema` is false, the schema will be validated against meta-schema and if schema is invalid the error will be thrown. See [options](#options). + + +##### .compileAsync(Object schema [, Boolean meta] [, Function callback]) -> Promise + +Asynchronous version of `compile` method that loads missing remote schemas using asynchronous function in `options.loadSchema`. This function returns a Promise that resolves to a validation function. An optional callback passed to `compileAsync` will be called with 2 parameters: error (or null) and validating function. The returned promise will reject (and the callback will be called with an error) when: + +- missing schema can't be loaded (`loadSchema` returns a Promise that rejects). +- a schema containing a missing reference is loaded, but the reference cannot be resolved. +- schema (or some loaded/referenced schema) is invalid. + +The function compiles schema and loads the first missing schema (or meta-schema) until all missing schemas are loaded. + +You can asynchronously compile meta-schema by passing `true` as the second parameter. + +See example in [Asynchronous compilation](#asynchronous-schema-compilation). + + +##### .validate(Object schema|String key|String ref, data) -> Boolean + +Validate data using passed schema (it will be compiled and cached). + +Instead of the schema you can use the key that was previously passed to `addSchema`, the schema id if it was present in the schema or any previously resolved reference. + +Validation errors will be available in the `errors` property of Ajv instance (`null` if there were no errors). + +__Please note__: every time this method is called the errors are overwritten so you need to copy them to another variable if you want to use them later. + +If the schema is asynchronous (has `$async` keyword on the top level) this method returns a Promise. See [Asynchronous validation](#asynchronous-validation). + + +##### .addSchema(Array<Object>|Object schema [, String key]) + +Add schema(s) to validator instance. This method does not compile schemas (but it still validates them). Because of that dependencies can be added in any order and circular dependencies are supported. It also prevents unnecessary compilation of schemas that are containers for other schemas but not used as a whole. + +Array of schemas can be passed (schemas should have ids), the second parameter will be ignored. + +Key can be passed that can be used to reference the schema and will be used as the schema id if there is no id inside the schema. If the key is not passed, the schema id will be used as the key. + + +Once the schema is added, it (and all the references inside it) can be referenced in other schemas and used to validate data. + +Although `addSchema` does not compile schemas, explicit compilation is not required - the schema will be compiled when it is used first time. + +By default the schema is validated against meta-schema before it is added, and if the schema does not pass validation the exception is thrown. This behaviour is controlled by `validateSchema` option. + + +##### .addMetaSchema(Array<Object>|Object schema [, String key]) + +Adds meta schema(s) that can be used to validate other schemas. That function should be used instead of `addSchema` because there may be instance options that would compile a meta schema incorrectly (at the moment it is `removeAdditional` option). + +There is no need to explicitly add draft 6 meta schema (http://json-schema.org/draft-06/schema and http://json-schema.org/schema) - it is added by default, unless option `meta` is set to `false`. You only need to use it if you have a changed meta-schema that you want to use to validate your schemas. See `validateSchema`. + + +##### .validateSchema(Object schema) -> Boolean + +Validates schema. This method should be used to validate schemas rather than `validate` due to the inconsistency of `uri` format in JSON Schema standard. + +By default this method is called automatically when the schema is added, so you rarely need to use it directly. + +If schema doesn't have `$schema` property, it is validated against draft 6 meta-schema (option `meta` should not be false). + +If schema has `$schema` property, then the schema with this id (that should be previously added) is used to validate passed schema. + +Errors will be available at `ajv.errors`. + + +##### .getSchema(String key) -> Function<Object data> + +Retrieve compiled schema previously added with `addSchema` by the key passed to `addSchema` or by its full reference (id). The returned validating function has `schema` property with the reference to the original schema. + + +##### .removeSchema([Object schema|String key|String ref|RegExp pattern]) + +Remove added/cached schema. Even if schema is referenced by other schemas it can be safely removed as dependent schemas have local references. + +Schema can be removed using: +- key passed to `addSchema` +- it's full reference (id) +- RegExp that should match schema id or key (meta-schemas won't be removed) +- actual schema object that will be stable-stringified to remove schema from cache + +If no parameter is passed all schemas but meta-schemas will be removed and the cache will be cleared. + + +##### .addFormat(String name, String|RegExp|Function|Object format) + +Add custom format to validate strings or numbers. It can also be used to replace pre-defined formats for Ajv instance. + +Strings are converted to RegExp. + +Function should return validation result as `true` or `false`. + +If object is passed it should have properties `validate`, `compare` and `async`: + +- _validate_: a string, RegExp or a function as described above. +- _compare_: an optional comparison function that accepts two strings and compares them according to the format meaning. This function is used with keywords `formatMaximum`/`formatMinimum` (defined in [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package). It should return `1` if the first value is bigger than the second value, `-1` if it is smaller and `0` if it is equal. +- _async_: an optional `true` value if `validate` is an asynchronous function; in this case it should return a promise that resolves with a value `true` or `false`. +- _type_: an optional type of data that the format applies to. It can be `"string"` (default) or `"number"` (see https://github.com/epoberezkin/ajv/issues/291#issuecomment-259923858). If the type of data is different, the validation will pass. + +Custom formats can be also added via `formats` option. + + +##### .addKeyword(String keyword, Object definition) + +Add custom validation keyword to Ajv instance. + +Keyword should be different from all standard JSON schema keywords and different from previously defined keywords. There is no way to redefine keywords or to remove keyword definition from the instance. + +Keyword must start with a letter, `_` or `$`, and may continue with letters, numbers, `_`, `$`, or `-`. +It is recommended to use an application-specific prefix for keywords to avoid current and future name collisions. + +Example Keywords: +- `"xyz-example"`: valid, and uses prefix for the xyz project to avoid name collisions. +- `"example"`: valid, but not recommended as it could collide with future versions of JSON schema etc. +- `"3-example"`: invalid as numbers are not allowed to be the first character in a keyword + +Keyword definition is an object with the following properties: + +- _type_: optional string or array of strings with data type(s) that the keyword applies to. If not present, the keyword will apply to all types. +- _validate_: validating function +- _compile_: compiling function +- _macro_: macro function +- _inline_: compiling function that returns code (as string) +- _schema_: an optional `false` value used with "validate" keyword to not pass schema +- _metaSchema_: an optional meta-schema for keyword schema +- _modifying_: `true` MUST be passed if keyword modifies data +- _valid_: pass `true`/`false` to pre-define validation result, the result returned from validation function will be ignored. This option cannot be used with macro keywords. +- _$data_: an optional `true` value to support [$data reference](#data-reference) as the value of custom keyword. The reference will be resolved at validation time. If the keyword has meta-schema it would be extended to allow $data and it will be used to validate the resolved value. Supporting $data reference requires that keyword has validating function (as the only option or in addition to compile, macro or inline function). +- _async_: an optional `true` value if the validation function is asynchronous (whether it is compiled or passed in _validate_ property); in this case it should return a promise that resolves with a value `true` or `false`. This option is ignored in case of "macro" and "inline" keywords. +- _errors_: an optional boolean indicating whether keyword returns errors. If this property is not set Ajv will determine if the errors were set in case of failed validation. + +_compile_, _macro_ and _inline_ are mutually exclusive, only one should be used at a time. _validate_ can be used separately or in addition to them to support $data reference. + +__Please note__: If the keyword is validating data type that is different from the type(s) in its definition, the validation function will not be called (and expanded macro will not be used), so there is no need to check for data type inside validation function or inside schema returned by macro function (unless you want to enforce a specific type and for some reason do not want to use a separate `type` keyword for that). In the same way as standard keywords work, if the keyword does not apply to the data type being validated, the validation of this keyword will succeed. + +See [Defining custom keywords](#defining-custom-keywords) for more details. + + +##### .getKeyword(String keyword) -> Object|Boolean + +Returns custom keyword definition, `true` for pre-defined keywords and `false` if the keyword is unknown. + + +##### .removeKeyword(String keyword) + +Removes custom or pre-defined keyword so you can redefine them. + +While this method can be used to extend pre-defined keywords, it can also be used to completely change their meaning - it may lead to unexpected results. + +__Please note__: schemas compiled before the keyword is removed will continue to work without changes. To recompile schemas use `removeSchema` method and compile them again. + + +##### .errorsText([Array<Object> errors [, Object options]]) -> String + +Returns the text with all errors in a String. + +Options can have properties `separator` (string used to separate errors, ", " by default) and `dataVar` (the variable name that dataPaths are prefixed with, "data" by default). + + +## Options + +Defaults: + +```javascript +{ + // validation and reporting options: + $data: false, + allErrors: false, + verbose: false, + jsonPointers: false, + uniqueItems: true, + unicode: true, + format: 'fast', + formats: {}, + unknownFormats: true, + schemas: {}, + // referenced schema options: + schemaId: undefined // recommended '$id' + missingRefs: true, + extendRefs: 'ignore', // recommended 'fail' + loadSchema: undefined, // function(uri: string): Promise {} + // options to modify validated data: + removeAdditional: false, + useDefaults: false, + coerceTypes: false, + // asynchronous validation options: + async: 'co*', + transpile: undefined, // requires ajv-async package + // advanced options: + meta: true, + validateSchema: true, + addUsedSchema: true, + inlineRefs: true, + passContext: false, + loopRequired: Infinity, + ownProperties: false, + multipleOfPrecision: false, + errorDataPath: 'object', + messages: true, + sourceCode: false, + processCode: undefined, // function (str: string): string {} + cache: new Cache, + serialize: undefined +} +``` + +##### Validation and reporting options + +- _$data_: support [$data references](#data-reference). Draft 6 meta-schema that is added by default will be extended to allow them. If you want to use another meta-schema you need to use $dataMetaSchema method to add support for $data reference. See [API](#api). +- _allErrors_: check all rules collecting all errors. Default is to return after the first error. +- _verbose_: include the reference to the part of the schema (`schema` and `parentSchema`) and validated data in errors (false by default). +- _jsonPointers_: set `dataPath` property of errors using [JSON Pointers](https://tools.ietf.org/html/rfc6901) instead of JavaScript property access notation. +- _uniqueItems_: validate `uniqueItems` keyword (true by default). +- _unicode_: calculate correct length of strings with unicode pairs (true by default). Pass `false` to use `.length` of strings that is faster, but gives "incorrect" lengths of strings with unicode pairs - each unicode pair is counted as two characters. +- _format_: formats validation mode ('fast' by default). Pass 'full' for more correct and slow validation or `false` not to validate formats at all. E.g., 25:00:00 and 2015/14/33 will be invalid time and date in 'full' mode but it will be valid in 'fast' mode. +- _formats_: an object with custom formats. Keys and values will be passed to `addFormat` method. +- _unknownFormats_: handling of unknown formats. Option values: + - `true` (default) - if an unknown format is encountered the exception is thrown during schema compilation. If `format` keyword value is [$data reference](#data-reference) and it is unknown the validation will fail. + - `[String]` - an array of unknown format names that will be ignored. This option can be used to allow usage of third party schemas with format(s) for which you don't have definitions, but still fail if another unknown format is used. If `format` keyword value is [$data reference](#data-reference) and it is not in this array the validation will fail. + - `"ignore"` - to log warning during schema compilation and always pass validation (the default behaviour in versions before 5.0.0). This option is not recommended, as it allows to mistype format name and it won't be validated without any error message. This behaviour is required by JSON-schema specification. +- _schemas_: an array or object of schemas that will be added to the instance. In case you pass the array the schemas must have IDs in them. When the object is passed the method `addSchema(value, key)` will be called for each schema in this object. + + +##### Referenced schema options + +- _schemaId_: this option defines which keywords are used as schema URI. Option value: + - `"$id"` (recommended) - only use `$id` keyword as schema URI (as specified in JSON Schema draft-06), ignore `id` keyword (if it is present a warning will be logged). + - `"id"` - only use `id` keyword as schema URI (as specified in JSON Schema draft-04), ignore `$id` keyword (if it is present a warning will be logged). + - `undefined` (default) - use both `$id` and `id` keywords as schema URI. If both are present (in the same schema object) and different the exception will be thrown during schema compilation. +- _missingRefs_: handling of missing referenced schemas. Option values: + - `true` (default) - if the reference cannot be resolved during compilation the exception is thrown. The thrown error has properties `missingRef` (with hash fragment) and `missingSchema` (without it). Both properties are resolved relative to the current base id (usually schema id, unless it was substituted). + - `"ignore"` - to log error during compilation and always pass validation. + - `"fail"` - to log error and successfully compile schema but fail validation if this rule is checked. +- _extendRefs_: validation of other keywords when `$ref` is present in the schema. Option values: + - `"ignore"` (default) - when `$ref` is used other keywords are ignored (as per [JSON Reference](https://tools.ietf.org/html/draft-pbryan-zyp-json-ref-03#section-3) standard). A warning will be logged during the schema compilation. + - `"fail"` (recommended) - if other validation keywords are used together with `$ref` the exception will be thrown when the schema is compiled. This option is recommended to make sure schema has no keywords that are ignored, which can be confusing. + - `true` - validate all keywords in the schemas with `$ref` (the default behaviour in versions before 5.0.0). +- _loadSchema_: asynchronous function that will be used to load remote schemas when `compileAsync` [method](#api-compileAsync) is used and some reference is missing (option `missingRefs` should NOT be 'fail' or 'ignore'). This function should accept remote schema uri as a parameter and return a Promise that resolves to a schema. See example in [Asynchronous compilation](#asynchronous-schema-compilation). + + +##### Options to modify validated data + +- _removeAdditional_: remove additional properties - see example in [Filtering data](#filtering-data). This option is not used if schema is added with `addMetaSchema` method. Option values: + - `false` (default) - not to remove additional properties + - `"all"` - all additional properties are removed, regardless of `additionalProperties` keyword in schema (and no validation is made for them). + - `true` - only additional properties with `additionalProperties` keyword equal to `false` are removed. + - `"failing"` - additional properties that fail schema validation will be removed (where `additionalProperties` keyword is `false` or schema). +- _useDefaults_: replace missing properties and items with the values from corresponding `default` keywords. Default behaviour is to ignore `default` keywords. This option is not used if schema is added with `addMetaSchema` method. See examples in [Assigning defaults](#assigning-defaults). Option values: + - `false` (default) - do not use defaults + - `true` - insert defaults by value (safer and slower, object literal is used). + - `"shared"` - insert defaults by reference (faster). If the default is an object, it will be shared by all instances of validated data. If you modify the inserted default in the validated data, it will be modified in the schema as well. +- _coerceTypes_: change data type of data to match `type` keyword. See the example in [Coercing data types](#coercing-data-types) and [coercion rules](https://github.com/epoberezkin/ajv/blob/master/COERCION.md). Option values: + - `false` (default) - no type coercion. + - `true` - coerce scalar data types. + - `"array"` - in addition to coercions between scalar types, coerce scalar data to an array with one element and vice versa (as required by the schema). + + +##### Asynchronous validation options + +- _async_: determines how Ajv compiles asynchronous schemas (see [Asynchronous validation](#asynchronous-validation)) to functions. Option values: + - `"*"` / `"co*"` (default) - compile to generator function ("co*" - wrapped with `co.wrap`). If generators are not supported and you don't provide `processCode` option (or `transpile` option if you use [ajv-async](https://github.com/epoberezkin/ajv-async) package), the exception will be thrown when async schema is compiled. + - `"es7"` - compile to es7 async function. Unless your platform supports them you need to provide `processCode` or `transpile` option. According to [compatibility table](http://kangax.github.io/compat-table/es7/)) async functions are supported by: + - Firefox 52, + - Chrome 55, + - Node.js 7 (with `--harmony-async-await`), + - MS Edge 13 (with flag). + - `undefined`/`true` - auto-detect async mode. It requires [ajv-async](https://github.com/epoberezkin/ajv-async) package. If `transpile` option is not passed, ajv-async will choose the first of supported/installed async/transpile modes in this order: + - "es7" (native async functions), + - "co*" (native generators with co.wrap), + - "es7"/"nodent", + - "co*"/"regenerator" during the creation of the Ajv instance. + + If none of the options is available the exception will be thrown. +- _transpile_: Requires [ajv-async](https://github.com/epoberezkin/ajv-async) package. It determines whether Ajv transpiles compiled asynchronous validation function. Option values: + - `"nodent"` - transpile with [nodent](https://github.com/MatAtBread/nodent). If nodent is not installed, the exception will be thrown. nodent can only transpile es7 async functions; it will enforce this mode. + - `"regenerator"` - transpile with [regenerator](https://github.com/facebook/regenerator). If regenerator is not installed, the exception will be thrown. + - a function - this function should accept the code of validation function as a string and return transpiled code. This option allows you to use any other transpiler you prefer. If you are passing a function, you can simply pass it to `processCode` option without using ajv-async. + + +##### Advanced options + +- _meta_: add [meta-schema](http://json-schema.org/documentation.html) so it can be used by other schemas (true by default). If an object is passed, it will be used as the default meta-schema for schemas that have no `$schema` keyword. This default meta-schema MUST have `$schema` keyword. +- _validateSchema_: validate added/compiled schemas against meta-schema (true by default). `$schema` property in the schema can either be http://json-schema.org/schema or http://json-schema.org/draft-04/schema or absent (draft-4 meta-schema will be used) or can be a reference to the schema previously added with `addMetaSchema` method. Option values: + - `true` (default) - if the validation fails, throw the exception. + - `"log"` - if the validation fails, log error. + - `false` - skip schema validation. +- _addUsedSchema_: by default methods `compile` and `validate` add schemas to the instance if they have `$id` (or `id`) property that doesn't start with "#". If `$id` is present and it is not unique the exception will be thrown. Set this option to `false` to skip adding schemas to the instance and the `$id` uniqueness check when these methods are used. This option does not affect `addSchema` method. +- _inlineRefs_: Affects compilation of referenced schemas. Option values: + - `true` (default) - the referenced schemas that don't have refs in them are inlined, regardless of their size - that substantially improves performance at the cost of the bigger size of compiled schema functions. + - `false` - to not inline referenced schemas (they will be compiled as separate functions). + - integer number - to limit the maximum number of keywords of the schema that will be inlined. +- _passContext_: pass validation context to custom keyword functions. If this option is `true` and you pass some context to the compiled validation function with `validate.call(context, data)`, the `context` will be available as `this` in your custom keywords. By default `this` is Ajv instance. +- _loopRequired_: by default `required` keyword is compiled into a single expression (or a sequence of statements in `allErrors` mode). In case of a very large number of properties in this keyword it may result in a very big validation function. Pass integer to set the number of properties above which `required` keyword will be validated in a loop - smaller validation function size but also worse performance. +- _ownProperties_: by default Ajv iterates over all enumerable object properties; when this option is `true` only own enumerable object properties (i.e. found directly on the object rather than on its prototype) are iterated. Contributed by @mbroadst. +- _multipleOfPrecision_: by default `multipleOf` keyword is validated by comparing the result of division with parseInt() of that result. It works for dividers that are bigger than 1. For small dividers such as 0.01 the result of the division is usually not integer (even when it should be integer, see issue [#84](https://github.com/epoberezkin/ajv/issues/84)). If you need to use fractional dividers set this option to some positive integer N to have `multipleOf` validated using this formula: `Math.abs(Math.round(division) - division) < 1e-N` (it is slower but allows for float arithmetics deviations). +- _errorDataPath_: set `dataPath` to point to 'object' (default) or to 'property' when validating keywords `required`, `additionalProperties` and `dependencies`. +- _messages_: Include human-readable messages in errors. `true` by default. `false` can be passed when custom messages are used (e.g. with [ajv-i18n](https://github.com/epoberezkin/ajv-i18n)). +- _sourceCode_: add `sourceCode` property to validating function (for debugging; this code can be different from the result of toString call). +- _processCode_: an optional function to process generated code before it is passed to Function constructor. It can be used to either beautify (the validating function is generated without line-breaks) or to transpile code. Starting from version 5.0.0 this option replaced options: + - `beautify` that formatted the generated function using [js-beautify](https://github.com/beautify-web/js-beautify). If you want to beautify the generated code pass `require('js-beautify').js_beautify`. + - `transpile` that transpiled asynchronous validation function. You can still use `transpile` option with [ajv-async](https://github.com/epoberezkin/ajv-async) package. See [Asynchronous validation](#asynchronous-validation) for more information. +- _cache_: an optional instance of cache to store compiled schemas using stable-stringified schema as a key. For example, set-associative cache [sacjs](https://github.com/epoberezkin/sacjs) can be used. If not passed then a simple hash is used which is good enough for the common use case (a limited number of statically defined schemas). Cache should have methods `put(key, value)`, `get(key)`, `del(key)` and `clear()`. +- _serialize_: an optional function to serialize schema to cache key. Pass `false` to use schema itself as a key (e.g., if WeakMap used as a cache). By default [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) is used. + + +## Validation errors + +In case of validation failure, Ajv assigns the array of errors to `errors` property of validation function (or to `errors` property of Ajv instance when `validate` or `validateSchema` methods were called). In case of [asynchronous validation](#asynchronous-validation), the returned promise is rejected with exception `Ajv.ValidationError` that has `errors` property. + + +### Error objects + +Each error is an object with the following properties: + +- _keyword_: validation keyword. +- _dataPath_: the path to the part of the data that was validated. By default `dataPath` uses JavaScript property access notation (e.g., `".prop[1].subProp"`). When the option `jsonPointers` is true (see [Options](#options)) `dataPath` will be set using JSON pointer standard (e.g., `"/prop/1/subProp"`). +- _schemaPath_: the path (JSON-pointer as a URI fragment) to the schema of the keyword that failed validation. +- _params_: the object with the additional information about error that can be used to create custom error messages (e.g., using [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) package). See below for parameters set by all keywords. +- _message_: the standard error message (can be excluded with option `messages` set to false). +- _schema_: the schema of the keyword (added with `verbose` option). +- _parentSchema_: the schema containing the keyword (added with `verbose` option) +- _data_: the data validated by the keyword (added with `verbose` option). + +__Please note__: `propertyNames` keyword schema validation errors have an additional property `propertyName`, `dataPath` points to the object. After schema validation for each property name, if it is invalid an additional error is added with the property `keyword` equal to `"propertyNames"`. + + +### Error parameters + +Properties of `params` object in errors depend on the keyword that failed validation. + +- `maxItems`, `minItems`, `maxLength`, `minLength`, `maxProperties`, `minProperties` - property `limit` (number, the schema of the keyword). +- `additionalItems` - property `limit` (the maximum number of allowed items in case when `items` keyword is an array of schemas and `additionalItems` is false). +- `additionalProperties` - property `additionalProperty` (the property not used in `properties` and `patternProperties` keywords). +- `dependencies` - properties: + - `property` (dependent property), + - `missingProperty` (required missing dependency - only the first one is reported currently) + - `deps` (required dependencies, comma separated list as a string), + - `depsCount` (the number of required dependencies). +- `format` - property `format` (the schema of the keyword). +- `maximum`, `minimum` - properties: + - `limit` (number, the schema of the keyword), + - `exclusive` (boolean, the schema of `exclusiveMaximum` or `exclusiveMinimum`), + - `comparison` (string, comparison operation to compare the data to the limit, with the data on the left and the limit on the right; can be "<", "<=", ">", ">=") +- `multipleOf` - property `multipleOf` (the schema of the keyword) +- `pattern` - property `pattern` (the schema of the keyword) +- `required` - property `missingProperty` (required property that is missing). +- `propertyNames` - property `propertyName` (an invalid property name). +- `patternRequired` (in ajv-keywords) - property `missingPattern` (required pattern that did not match any property). +- `type` - property `type` (required type(s), a string, can be a comma-separated list) +- `uniqueItems` - properties `i` and `j` (indices of duplicate items). +- `enum` - property `allowedValues` pointing to the array of values (the schema of the keyword). +- `$ref` - property `ref` with the referenced schema URI. +- custom keywords (in case keyword definition doesn't create errors) - property `keyword` (the keyword name). + + +## Related packages + +- [ajv-cli](https://github.com/epoberezkin/ajv-cli) - command line interface for Ajv +- [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) - internationalised error messages +- [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) - keywords $merge and $patch. +- [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) - several custom keywords that can be used with Ajv (typeof, instanceof, range, propertyNames) +- [ajv-errors](https://github.com/epoberezkin/ajv-errors) - custom error messages for Ajv + + +## Some packages using Ajv + +- [webpack](https://github.com/webpack/webpack) - a module bundler. Its main purpose is to bundle JavaScript files for usage in a browser +- [jsonscript-js](https://github.com/JSONScript/jsonscript-js) - the interpreter for [JSONScript](http://www.jsonscript.org) - scripted processing of existing endpoints and services +- [osprey-method-handler](https://github.com/mulesoft-labs/osprey-method-handler) - Express middleware for validating requests and responses based on a RAML method object, used in [osprey](https://github.com/mulesoft/osprey) - validating API proxy generated from a RAML definition +- [har-validator](https://github.com/ahmadnassri/har-validator) - HTTP Archive (HAR) validator +- [jsoneditor](https://github.com/josdejong/jsoneditor) - a web-based tool to view, edit, format, and validate JSON http://jsoneditoronline.org +- [JSON Schema Lint](https://github.com/nickcmaynard/jsonschemalint) - a web tool to validate JSON/YAML document against a single JSON-schema http://jsonschemalint.com +- [objection](https://github.com/vincit/objection.js) - SQL-friendly ORM for Node.js +- [table](https://github.com/gajus/table) - formats data into a string table +- [ripple-lib](https://github.com/ripple/ripple-lib) - a JavaScript API for interacting with [Ripple](https://ripple.com) in Node.js and the browser +- [restbase](https://github.com/wikimedia/restbase) - distributed storage with REST API & dispatcher for backend services built to provide a low-latency & high-throughput API for Wikipedia / Wikimedia content +- [hippie-swagger](https://github.com/CacheControl/hippie-swagger) - [Hippie](https://github.com/vesln/hippie) wrapper that provides end to end API testing with swagger validation +- [react-form-controlled](https://github.com/seeden/react-form-controlled) - React controlled form components with validation +- [rabbitmq-schema](https://github.com/tjmehta/rabbitmq-schema) - a schema definition module for RabbitMQ graphs and messages +- [@query/schema](https://www.npmjs.com/package/@query/schema) - stream filtering with a URI-safe query syntax parsing to JSON Schema +- [chai-ajv-json-schema](https://github.com/peon374/chai-ajv-json-schema) - chai plugin to us JSON-schema with expect in mocha tests +- [grunt-jsonschema-ajv](https://github.com/SignpostMarv/grunt-jsonschema-ajv) - Grunt plugin for validating files against JSON Schema +- [extract-text-webpack-plugin](https://github.com/webpack-contrib/extract-text-webpack-plugin) - extract text from bundle into a file +- [electron-builder](https://github.com/electron-userland/electron-builder) - a solution to package and build a ready for distribution Electron app +- [addons-linter](https://github.com/mozilla/addons-linter) - Mozilla Add-ons Linter +- [gh-pages-generator](https://github.com/epoberezkin/gh-pages-generator) - multi-page site generator converting markdown files to GitHub pages + + +## Tests + +``` +npm install +git submodule update --init +npm test +``` + +## Contributing + +All validation functions are generated using doT templates in [dot](https://github.com/epoberezkin/ajv/tree/master/lib/dot) folder. Templates are precompiled so doT is not a run-time dependency. + +`npm run build` - compiles templates to [dotjs](https://github.com/epoberezkin/ajv/tree/master/lib/dotjs) folder. + +`npm run watch` - automatically compiles templates when files in dot folder change + +Please see [Contributing guidelines](https://github.com/epoberezkin/ajv/blob/master/CONTRIBUTING.md) + + +## Changes history + +See https://github.com/epoberezkin/ajv/releases + +__Please note__: [Changes in version 5.0.0](https://github.com/epoberezkin/ajv/releases/tag/5.0.0). + +[Changes in version 4.6.0](https://github.com/epoberezkin/ajv/releases/tag/4.6.0). + +[Changes in version 4.0.0](https://github.com/epoberezkin/ajv/releases/tag/4.0.0). + +[Changes in version 3.0.0](https://github.com/epoberezkin/ajv/releases/tag/3.0.0). + +[Changes in version 2.0.0](https://github.com/epoberezkin/ajv/releases/tag/2.0.0). + + +## License + +[MIT](https://github.com/epoberezkin/ajv/blob/master/LICENSE) diff --git a/src/js-validator/node_modules/ajv/dist/ajv.bundle.js b/src/js-validator/node_modules/ajv/dist/ajv.bundle.js new file mode 100644 index 000000000..592c7062c --- /dev/null +++ b/src/js-validator/node_modules/ajv/dist/ajv.bundle.js @@ -0,0 +1,7310 @@ +(function(f){if(typeof exports==="object"&&typeof module!=="undefined"){module.exports=f()}else if(typeof define==="function"&&define.amd){define([],f)}else{var g;if(typeof window!=="undefined"){g=window}else if(typeof global!=="undefined"){g=global}else if(typeof self!=="undefined"){g=self}else{g=this}g.Ajv = f()}})(function(){var define,module,exports;return (function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o%\\^`{|}]|%[0-9a-f]{2})|\{[+#./;?&=,!@|]?(?:[a-z0-9_]|%[0-9a-f]{2})+(?::[1-9][0-9]{0,3}|\*)?(?:,(?:[a-z0-9_]|%[0-9a-f]{2})+(?::[1-9][0-9]{0,3}|\*)?)*\})*$/i; +// For the source: https://gist.github.com/dperini/729294 +// For test cases: https://mathiasbynens.be/demo/url-regex +// @todo Delete current URL in favour of the commented out URL rule when this issue is fixed https://github.com/eslint/eslint/issues/7983. +// var URL = /^(?:(?:https?|ftp):\/\/)(?:\S+(?::\S*)?@)?(?:(?!10(?:\.\d{1,3}){3})(?!127(?:\.\d{1,3}){3})(?!169\.254(?:\.\d{1,3}){2})(?!192\.168(?:\.\d{1,3}){2})(?!172\.(?:1[6-9]|2\d|3[0-1])(?:\.\d{1,3}){2})(?:[1-9]\d?|1\d\d|2[01]\d|22[0-3])(?:\.(?:1?\d{1,2}|2[0-4]\d|25[0-5])){2}(?:\.(?:[1-9]\d?|1\d\d|2[0-4]\d|25[0-4]))|(?:(?:[a-z\u{00a1}-\u{ffff}0-9]+-?)*[a-z\u{00a1}-\u{ffff}0-9]+)(?:\.(?:[a-z\u{00a1}-\u{ffff}0-9]+-?)*[a-z\u{00a1}-\u{ffff}0-9]+)*(?:\.(?:[a-z\u{00a1}-\u{ffff}]{2,})))(?::\d{2,5})?(?:\/[^\s]*)?$/iu; +var URL = /^(?:(?:http[s\u017F]?|ftp):\/\/)(?:(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+(?::(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])*)?@)?(?:(?!10(?:\.[0-9]{1,3}){3})(?!127(?:\.[0-9]{1,3}){3})(?!169\.254(?:\.[0-9]{1,3}){2})(?!192\.168(?:\.[0-9]{1,3}){2})(?!172\.(?:1[6-9]|2[0-9]|3[01])(?:\.[0-9]{1,3}){2})(?:[1-9][0-9]?|1[0-9][0-9]|2[01][0-9]|22[0-3])(?:\.(?:1?[0-9]{1,2}|2[0-4][0-9]|25[0-5])){2}(?:\.(?:[1-9][0-9]?|1[0-9][0-9]|2[0-4][0-9]|25[0-4]))|(?:(?:(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+-?)*(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+)(?:\.(?:(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+-?)*(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+)*(?:\.(?:(?:[KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF]){2,})))(?::[0-9]{2,5})?(?:\/(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])*)?$/i; +var UUID = /^(?:urn:uuid:)?[0-9a-f]{8}-(?:[0-9a-f]{4}-){3}[0-9a-f]{12}$/i; +var JSON_POINTER = /^(?:\/(?:[^~/]|~0|~1)*)*$|^#(?:\/(?:[a-z0-9_\-.!$&'()*+,;:=@]|%[0-9a-f]{2}|~0|~1)*)*$/i; +var RELATIVE_JSON_POINTER = /^(?:0|[1-9][0-9]*)(?:#|(?:\/(?:[^~/]|~0|~1)*)*)$/; + + +module.exports = formats; + +function formats(mode) { + mode = mode == 'full' ? 'full' : 'fast'; + return util.copy(formats[mode]); +} + + +formats.fast = { + // date: http://tools.ietf.org/html/rfc3339#section-5.6 + date: /^\d\d\d\d-[0-1]\d-[0-3]\d$/, + // date-time: http://tools.ietf.org/html/rfc3339#section-5.6 + time: /^[0-2]\d:[0-5]\d:[0-5]\d(?:\.\d+)?(?:z|[+-]\d\d:\d\d)?$/i, + 'date-time': /^\d\d\d\d-[0-1]\d-[0-3]\d[t\s][0-2]\d:[0-5]\d:[0-5]\d(?:\.\d+)?(?:z|[+-]\d\d:\d\d)$/i, + // uri: https://github.com/mafintosh/is-my-json-valid/blob/master/formats.js + uri: /^(?:[a-z][a-z0-9+-.]*)(?::|\/)\/?[^\s]*$/i, + 'uri-reference': /^(?:(?:[a-z][a-z0-9+-.]*:)?\/\/)?[^\s]*$/i, + 'uri-template': URITEMPLATE, + url: URL, + // email (sources from jsen validator): + // http://stackoverflow.com/questions/201323/using-a-regular-expression-to-validate-an-email-address#answer-8829363 + // http://www.w3.org/TR/html5/forms.html#valid-e-mail-address (search for 'willful violation') + email: /^[a-z0-9.!#$%&'*+/=?^_`{|}~-]+@[a-z0-9](?:[a-z0-9-]{0,61}[a-z0-9])?(?:\.[a-z0-9](?:[a-z0-9-]{0,61}[a-z0-9])?)*$/i, + hostname: HOSTNAME, + // optimized https://www.safaribooksonline.com/library/view/regular-expressions-cookbook/9780596802837/ch07s16.html + ipv4: /^(?:(?:25[0-5]|2[0-4]\d|[01]?\d\d?)\.){3}(?:25[0-5]|2[0-4]\d|[01]?\d\d?)$/, + // optimized http://stackoverflow.com/questions/53497/regular-expression-that-matches-valid-ipv6-addresses + ipv6: /^\s*(?:(?:(?:[0-9a-f]{1,4}:){7}(?:[0-9a-f]{1,4}|:))|(?:(?:[0-9a-f]{1,4}:){6}(?::[0-9a-f]{1,4}|(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){5}(?:(?:(?::[0-9a-f]{1,4}){1,2})|:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){4}(?:(?:(?::[0-9a-f]{1,4}){1,3})|(?:(?::[0-9a-f]{1,4})?:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){3}(?:(?:(?::[0-9a-f]{1,4}){1,4})|(?:(?::[0-9a-f]{1,4}){0,2}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){2}(?:(?:(?::[0-9a-f]{1,4}){1,5})|(?:(?::[0-9a-f]{1,4}){0,3}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){1}(?:(?:(?::[0-9a-f]{1,4}){1,6})|(?:(?::[0-9a-f]{1,4}){0,4}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?::(?:(?:(?::[0-9a-f]{1,4}){1,7})|(?:(?::[0-9a-f]{1,4}){0,5}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:)))(?:%.+)?\s*$/i, + regex: regex, + // uuid: http://tools.ietf.org/html/rfc4122 + uuid: UUID, + // JSON-pointer: https://tools.ietf.org/html/rfc6901 + // uri fragment: https://tools.ietf.org/html/rfc3986#appendix-A + 'json-pointer': JSON_POINTER, + // relative JSON-pointer: http://tools.ietf.org/html/draft-luff-relative-json-pointer-00 + 'relative-json-pointer': RELATIVE_JSON_POINTER +}; + + +formats.full = { + date: date, + time: time, + 'date-time': date_time, + uri: uri, + 'uri-reference': URIREF, + 'uri-template': URITEMPLATE, + url: URL, + email: /^[a-z0-9!#$%&'*+/=?^_`{|}~-]+(?:\.[a-z0-9!#$%&''*+/=?^_`{|}~-]+)*@(?:[a-z0-9](?:[a-z0-9-]*[a-z0-9])?\.)+[a-z0-9](?:[a-z0-9-]*[a-z0-9])?$/i, + hostname: hostname, + ipv4: /^(?:(?:25[0-5]|2[0-4]\d|[01]?\d\d?)\.){3}(?:25[0-5]|2[0-4]\d|[01]?\d\d?)$/, + ipv6: /^\s*(?:(?:(?:[0-9a-f]{1,4}:){7}(?:[0-9a-f]{1,4}|:))|(?:(?:[0-9a-f]{1,4}:){6}(?::[0-9a-f]{1,4}|(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){5}(?:(?:(?::[0-9a-f]{1,4}){1,2})|:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){4}(?:(?:(?::[0-9a-f]{1,4}){1,3})|(?:(?::[0-9a-f]{1,4})?:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){3}(?:(?:(?::[0-9a-f]{1,4}){1,4})|(?:(?::[0-9a-f]{1,4}){0,2}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){2}(?:(?:(?::[0-9a-f]{1,4}){1,5})|(?:(?::[0-9a-f]{1,4}){0,3}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){1}(?:(?:(?::[0-9a-f]{1,4}){1,6})|(?:(?::[0-9a-f]{1,4}){0,4}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?::(?:(?:(?::[0-9a-f]{1,4}){1,7})|(?:(?::[0-9a-f]{1,4}){0,5}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:)))(?:%.+)?\s*$/i, + regex: regex, + uuid: UUID, + 'json-pointer': JSON_POINTER, + 'relative-json-pointer': RELATIVE_JSON_POINTER +}; + + +function date(str) { + // full-date from http://tools.ietf.org/html/rfc3339#section-5.6 + var matches = str.match(DATE); + if (!matches) return false; + + var month = +matches[1]; + var day = +matches[2]; + return month >= 1 && month <= 12 && day >= 1 && day <= DAYS[month]; +} + + +function time(str, full) { + var matches = str.match(TIME); + if (!matches) return false; + + var hour = matches[1]; + var minute = matches[2]; + var second = matches[3]; + var timeZone = matches[5]; + return hour <= 23 && minute <= 59 && second <= 59 && (!full || timeZone); +} + + +var DATE_TIME_SEPARATOR = /t|\s/i; +function date_time(str) { + // http://tools.ietf.org/html/rfc3339#section-5.6 + var dateTime = str.split(DATE_TIME_SEPARATOR); + return dateTime.length == 2 && date(dateTime[0]) && time(dateTime[1], true); +} + + +function hostname(str) { + // https://tools.ietf.org/html/rfc1034#section-3.5 + // https://tools.ietf.org/html/rfc1123#section-2 + return str.length <= 255 && HOSTNAME.test(str); +} + + +var NOT_URI_FRAGMENT = /\/|:/; +function uri(str) { + // http://jmrware.com/articles/2009/uri_regexp/URI_regex.html + optional protocol + required "." + return NOT_URI_FRAGMENT.test(str) && URI.test(str); +} + + +var Z_ANCHOR = /[^\\]\\Z/; +function regex(str) { + if (Z_ANCHOR.test(str)) return false; + try { + new RegExp(str); + return true; + } catch(e) { + return false; + } +} + +},{"./util":12}],7:[function(require,module,exports){ +'use strict'; + +var resolve = require('./resolve') + , util = require('./util') + , errorClasses = require('./error_classes') + , stableStringify = require('fast-json-stable-stringify'); + +var validateGenerator = require('../dotjs/validate'); + +/** + * Functions below are used inside compiled validations function + */ + +var co = require('co'); +var ucs2length = util.ucs2length; +var equal = require('fast-deep-equal'); + +// this error is thrown by async schemas to return validation errors via exception +var ValidationError = errorClasses.Validation; + +module.exports = compile; + + +/** + * Compiles schema to validation function + * @this Ajv + * @param {Object} schema schema object + * @param {Object} root object with information about the root schema for this schema + * @param {Object} localRefs the hash of local references inside the schema (created by resolve.id), used for inline resolution + * @param {String} baseId base ID for IDs in the schema + * @return {Function} validation function + */ +function compile(schema, root, localRefs, baseId) { + /* jshint validthis: true, evil: true */ + /* eslint no-shadow: 0 */ + var self = this + , opts = this._opts + , refVal = [ undefined ] + , refs = {} + , patterns = [] + , patternsHash = {} + , defaults = [] + , defaultsHash = {} + , customRules = []; + + root = root || { schema: schema, refVal: refVal, refs: refs }; + + var c = checkCompiling.call(this, schema, root, baseId); + var compilation = this._compilations[c.index]; + if (c.compiling) return (compilation.callValidate = callValidate); + + var formats = this._formats; + var RULES = this.RULES; + + try { + var v = localCompile(schema, root, localRefs, baseId); + compilation.validate = v; + var cv = compilation.callValidate; + if (cv) { + cv.schema = v.schema; + cv.errors = null; + cv.refs = v.refs; + cv.refVal = v.refVal; + cv.root = v.root; + cv.$async = v.$async; + if (opts.sourceCode) cv.source = v.source; + } + return v; + } finally { + endCompiling.call(this, schema, root, baseId); + } + + function callValidate() { + var validate = compilation.validate; + var result = validate.apply(null, arguments); + callValidate.errors = validate.errors; + return result; + } + + function localCompile(_schema, _root, localRefs, baseId) { + var isRoot = !_root || (_root && _root.schema == _schema); + if (_root.schema != root.schema) + return compile.call(self, _schema, _root, localRefs, baseId); + + var $async = _schema.$async === true; + + var sourceCode = validateGenerator({ + isTop: true, + schema: _schema, + isRoot: isRoot, + baseId: baseId, + root: _root, + schemaPath: '', + errSchemaPath: '#', + errorPath: '""', + MissingRefError: errorClasses.MissingRef, + RULES: RULES, + validate: validateGenerator, + util: util, + resolve: resolve, + resolveRef: resolveRef, + usePattern: usePattern, + useDefault: useDefault, + useCustomRule: useCustomRule, + opts: opts, + formats: formats, + self: self + }); + + sourceCode = vars(refVal, refValCode) + vars(patterns, patternCode) + + vars(defaults, defaultCode) + vars(customRules, customRuleCode) + + sourceCode; + + if (opts.processCode) sourceCode = opts.processCode(sourceCode); + // console.log('\n\n\n *** \n', JSON.stringify(sourceCode)); + var validate; + try { + var makeValidate = new Function( + 'self', + 'RULES', + 'formats', + 'root', + 'refVal', + 'defaults', + 'customRules', + 'co', + 'equal', + 'ucs2length', + 'ValidationError', + sourceCode + ); + + validate = makeValidate( + self, + RULES, + formats, + root, + refVal, + defaults, + customRules, + co, + equal, + ucs2length, + ValidationError + ); + + refVal[0] = validate; + } catch(e) { + console.error('Error compiling schema, function code:', sourceCode); + throw e; + } + + validate.schema = _schema; + validate.errors = null; + validate.refs = refs; + validate.refVal = refVal; + validate.root = isRoot ? validate : _root; + if ($async) validate.$async = true; + if (opts.sourceCode === true) { + validate.source = { + code: sourceCode, + patterns: patterns, + defaults: defaults + }; + } + + return validate; + } + + function resolveRef(baseId, ref, isRoot) { + ref = resolve.url(baseId, ref); + var refIndex = refs[ref]; + var _refVal, refCode; + if (refIndex !== undefined) { + _refVal = refVal[refIndex]; + refCode = 'refVal[' + refIndex + ']'; + return resolvedRef(_refVal, refCode); + } + if (!isRoot && root.refs) { + var rootRefId = root.refs[ref]; + if (rootRefId !== undefined) { + _refVal = root.refVal[rootRefId]; + refCode = addLocalRef(ref, _refVal); + return resolvedRef(_refVal, refCode); + } + } + + refCode = addLocalRef(ref); + var v = resolve.call(self, localCompile, root, ref); + if (v === undefined) { + var localSchema = localRefs && localRefs[ref]; + if (localSchema) { + v = resolve.inlineRef(localSchema, opts.inlineRefs) + ? localSchema + : compile.call(self, localSchema, root, localRefs, baseId); + } + } + + if (v === undefined) { + removeLocalRef(ref); + } else { + replaceLocalRef(ref, v); + return resolvedRef(v, refCode); + } + } + + function addLocalRef(ref, v) { + var refId = refVal.length; + refVal[refId] = v; + refs[ref] = refId; + return 'refVal' + refId; + } + + function removeLocalRef(ref) { + delete refs[ref]; + } + + function replaceLocalRef(ref, v) { + var refId = refs[ref]; + refVal[refId] = v; + } + + function resolvedRef(refVal, code) { + return typeof refVal == 'object' || typeof refVal == 'boolean' + ? { code: code, schema: refVal, inline: true } + : { code: code, $async: refVal && refVal.$async }; + } + + function usePattern(regexStr) { + var index = patternsHash[regexStr]; + if (index === undefined) { + index = patternsHash[regexStr] = patterns.length; + patterns[index] = regexStr; + } + return 'pattern' + index; + } + + function useDefault(value) { + switch (typeof value) { + case 'boolean': + case 'number': + return '' + value; + case 'string': + return util.toQuotedString(value); + case 'object': + if (value === null) return 'null'; + var valueStr = stableStringify(value); + var index = defaultsHash[valueStr]; + if (index === undefined) { + index = defaultsHash[valueStr] = defaults.length; + defaults[index] = value; + } + return 'default' + index; + } + } + + function useCustomRule(rule, schema, parentSchema, it) { + var validateSchema = rule.definition.validateSchema; + if (validateSchema && self._opts.validateSchema !== false) { + var valid = validateSchema(schema); + if (!valid) { + var message = 'keyword schema is invalid: ' + self.errorsText(validateSchema.errors); + if (self._opts.validateSchema == 'log') console.error(message); + else throw new Error(message); + } + } + + var compile = rule.definition.compile + , inline = rule.definition.inline + , macro = rule.definition.macro; + + var validate; + if (compile) { + validate = compile.call(self, schema, parentSchema, it); + } else if (macro) { + validate = macro.call(self, schema, parentSchema, it); + if (opts.validateSchema !== false) self.validateSchema(validate, true); + } else if (inline) { + validate = inline.call(self, it, rule.keyword, schema, parentSchema); + } else { + validate = rule.definition.validate; + if (!validate) return; + } + + if (validate === undefined) + throw new Error('custom keyword "' + rule.keyword + '"failed to compile'); + + var index = customRules.length; + customRules[index] = validate; + + return { + code: 'customRule' + index, + validate: validate + }; + } +} + + +/** + * Checks if the schema is currently compiled + * @this Ajv + * @param {Object} schema schema to compile + * @param {Object} root root object + * @param {String} baseId base schema ID + * @return {Object} object with properties "index" (compilation index) and "compiling" (boolean) + */ +function checkCompiling(schema, root, baseId) { + /* jshint validthis: true */ + var index = compIndex.call(this, schema, root, baseId); + if (index >= 0) return { index: index, compiling: true }; + index = this._compilations.length; + this._compilations[index] = { + schema: schema, + root: root, + baseId: baseId + }; + return { index: index, compiling: false }; +} + + +/** + * Removes the schema from the currently compiled list + * @this Ajv + * @param {Object} schema schema to compile + * @param {Object} root root object + * @param {String} baseId base schema ID + */ +function endCompiling(schema, root, baseId) { + /* jshint validthis: true */ + var i = compIndex.call(this, schema, root, baseId); + if (i >= 0) this._compilations.splice(i, 1); +} + + +/** + * Index of schema compilation in the currently compiled list + * @this Ajv + * @param {Object} schema schema to compile + * @param {Object} root root object + * @param {String} baseId base schema ID + * @return {Integer} compilation index + */ +function compIndex(schema, root, baseId) { + /* jshint validthis: true */ + for (var i=0; i= 0xD800 && value <= 0xDBFF && pos < len) { + // high surrogate, and there is a next character + value = str.charCodeAt(pos); + if ((value & 0xFC00) == 0xDC00) pos++; // low surrogate + } + } + return length; +}; + +},{}],12:[function(require,module,exports){ +'use strict'; + + +module.exports = { + copy: copy, + checkDataType: checkDataType, + checkDataTypes: checkDataTypes, + coerceToTypes: coerceToTypes, + toHash: toHash, + getProperty: getProperty, + escapeQuotes: escapeQuotes, + equal: require('fast-deep-equal'), + ucs2length: require('./ucs2length'), + varOccurences: varOccurences, + varReplace: varReplace, + cleanUpCode: cleanUpCode, + finalCleanUpCode: finalCleanUpCode, + schemaHasRules: schemaHasRules, + schemaHasRulesExcept: schemaHasRulesExcept, + toQuotedString: toQuotedString, + getPathExpr: getPathExpr, + getPath: getPath, + getData: getData, + unescapeFragment: unescapeFragment, + unescapeJsonPointer: unescapeJsonPointer, + escapeFragment: escapeFragment, + escapeJsonPointer: escapeJsonPointer +}; + + +function copy(o, to) { + to = to || {}; + for (var key in o) to[key] = o[key]; + return to; +} + + +function checkDataType(dataType, data, negate) { + var EQUAL = negate ? ' !== ' : ' === ' + , AND = negate ? ' || ' : ' && ' + , OK = negate ? '!' : '' + , NOT = negate ? '' : '!'; + switch (dataType) { + case 'null': return data + EQUAL + 'null'; + case 'array': return OK + 'Array.isArray(' + data + ')'; + case 'object': return '(' + OK + data + AND + + 'typeof ' + data + EQUAL + '"object"' + AND + + NOT + 'Array.isArray(' + data + '))'; + case 'integer': return '(typeof ' + data + EQUAL + '"number"' + AND + + NOT + '(' + data + ' % 1)' + + AND + data + EQUAL + data + ')'; + default: return 'typeof ' + data + EQUAL + '"' + dataType + '"'; + } +} + + +function checkDataTypes(dataTypes, data) { + switch (dataTypes.length) { + case 1: return checkDataType(dataTypes[0], data, true); + default: + var code = ''; + var types = toHash(dataTypes); + if (types.array && types.object) { + code = types.null ? '(': '(!' + data + ' || '; + code += 'typeof ' + data + ' !== "object")'; + delete types.null; + delete types.array; + delete types.object; + } + if (types.number) delete types.integer; + for (var t in types) + code += (code ? ' && ' : '' ) + checkDataType(t, data, true); + + return code; + } +} + + +var COERCE_TO_TYPES = toHash([ 'string', 'number', 'integer', 'boolean', 'null' ]); +function coerceToTypes(optionCoerceTypes, dataTypes) { + if (Array.isArray(dataTypes)) { + var types = []; + for (var i=0; i= lvl) throw new Error('Cannot access property/index ' + up + ' levels up, current level is ' + lvl); + return paths[lvl - up]; + } + + if (up > lvl) throw new Error('Cannot access data ' + up + ' levels up, current level is ' + lvl); + data = 'data' + ((lvl - up) || ''); + if (!jsonPointer) return data; + } + + var expr = data; + var segments = jsonPointer.split('/'); + for (var i=0; i', + $notOp = $isMax ? '>' : '<', + $errorKeyword = undefined; + if ($isDataExcl) { + var $schemaValueExcl = it.util.getData($schemaExcl.$data, $dataLvl, it.dataPathArr), + $exclusive = 'exclusive' + $lvl, + $exclType = 'exclType' + $lvl, + $exclIsNumber = 'exclIsNumber' + $lvl, + $opExpr = 'op' + $lvl, + $opStr = '\' + ' + $opExpr + ' + \''; + out += ' var schemaExcl' + ($lvl) + ' = ' + ($schemaValueExcl) + '; '; + $schemaValueExcl = 'schemaExcl' + $lvl; + out += ' var ' + ($exclusive) + '; var ' + ($exclType) + ' = typeof ' + ($schemaValueExcl) + '; if (' + ($exclType) + ' != \'boolean\' && ' + ($exclType) + ' != \'undefined\' && ' + ($exclType) + ' != \'number\') { '; + var $errorKeyword = $exclusiveKeyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || '_exclusiveLimit') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'' + ($exclusiveKeyword) + ' should be boolean\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + out += ' ' + ($exclType) + ' == \'number\' ? ( (' + ($exclusive) + ' = ' + ($schemaValue) + ' === undefined || ' + ($schemaValueExcl) + ' ' + ($op) + '= ' + ($schemaValue) + ') ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaValueExcl) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) : ( (' + ($exclusive) + ' = ' + ($schemaValueExcl) + ' === true) ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaValue) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) || ' + ($data) + ' !== ' + ($data) + ') { var op' + ($lvl) + ' = ' + ($exclusive) + ' ? \'' + ($op) + '\' : \'' + ($op) + '=\';'; + } else { + var $exclIsNumber = typeof $schemaExcl == 'number', + $opStr = $op; + if ($exclIsNumber && $isData) { + var $opExpr = '\'' + $opStr + '\''; + out += ' if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + out += ' ( ' + ($schemaValue) + ' === undefined || ' + ($schemaExcl) + ' ' + ($op) + '= ' + ($schemaValue) + ' ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaExcl) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) || ' + ($data) + ' !== ' + ($data) + ') { '; + } else { + if ($exclIsNumber && $schema === undefined) { + $exclusive = true; + $errorKeyword = $exclusiveKeyword; + $errSchemaPath = it.errSchemaPath + '/' + $exclusiveKeyword; + $schemaValue = $schemaExcl; + $notOp += '='; + } else { + if ($exclIsNumber) $schemaValue = Math[$isMax ? 'min' : 'max']($schemaExcl, $schema); + if ($schemaExcl === ($exclIsNumber ? $schemaValue : true)) { + $exclusive = true; + $errorKeyword = $exclusiveKeyword; + $errSchemaPath = it.errSchemaPath + '/' + $exclusiveKeyword; + $notOp += '='; + } else { + $exclusive = false; + $opStr += '='; + } + } + var $opExpr = '\'' + $opStr + '\''; + out += ' if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + out += ' ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' || ' + ($data) + ' !== ' + ($data) + ') { '; + } + } + $errorKeyword = $errorKeyword || $keyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || '_limit') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { comparison: ' + ($opExpr) + ', limit: ' + ($schemaValue) + ', exclusive: ' + ($exclusive) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should be ' + ($opStr) + ' '; + if ($isData) { + out += '\' + ' + ($schemaValue); + } else { + out += '' + ($schemaValue) + '\''; + } + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],14:[function(require,module,exports){ +'use strict'; +module.exports = function generate__limitItems(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $errorKeyword; + var $data = 'data' + ($dataLvl || ''); + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + var $op = $keyword == 'maxItems' ? '>' : '<'; + out += 'if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + out += ' ' + ($data) + '.length ' + ($op) + ' ' + ($schemaValue) + ') { '; + var $errorKeyword = $keyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || '_limitItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have '; + if ($keyword == 'maxItems') { + out += 'more'; + } else { + out += 'less'; + } + out += ' than '; + if ($isData) { + out += '\' + ' + ($schemaValue) + ' + \''; + } else { + out += '' + ($schema); + } + out += ' items\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += '} '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],15:[function(require,module,exports){ +'use strict'; +module.exports = function generate__limitLength(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $errorKeyword; + var $data = 'data' + ($dataLvl || ''); + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + var $op = $keyword == 'maxLength' ? '>' : '<'; + out += 'if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + if (it.opts.unicode === false) { + out += ' ' + ($data) + '.length '; + } else { + out += ' ucs2length(' + ($data) + ') '; + } + out += ' ' + ($op) + ' ' + ($schemaValue) + ') { '; + var $errorKeyword = $keyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || '_limitLength') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT be '; + if ($keyword == 'maxLength') { + out += 'longer'; + } else { + out += 'shorter'; + } + out += ' than '; + if ($isData) { + out += '\' + ' + ($schemaValue) + ' + \''; + } else { + out += '' + ($schema); + } + out += ' characters\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += '} '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],16:[function(require,module,exports){ +'use strict'; +module.exports = function generate__limitProperties(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $errorKeyword; + var $data = 'data' + ($dataLvl || ''); + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + var $op = $keyword == 'maxProperties' ? '>' : '<'; + out += 'if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; + } + out += ' Object.keys(' + ($data) + ').length ' + ($op) + ' ' + ($schemaValue) + ') { '; + var $errorKeyword = $keyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || '_limitProperties') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have '; + if ($keyword == 'maxProperties') { + out += 'more'; + } else { + out += 'less'; + } + out += ' than '; + if ($isData) { + out += '\' + ' + ($schemaValue) + ' + \''; + } else { + out += '' + ($schema); + } + out += ' properties\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += '} '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],17:[function(require,module,exports){ +'use strict'; +module.exports = function generate_allOf(it, $keyword, $ruleType) { + var out = ' '; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + var $currentBaseId = $it.baseId, + $allSchemasEmpty = true; + var arr1 = $schema; + if (arr1) { + var $sch, $i = -1, + l1 = arr1.length - 1; + while ($i < l1) { + $sch = arr1[$i += 1]; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + $allSchemasEmpty = false; + $it.schema = $sch; + $it.schemaPath = $schemaPath + '[' + $i + ']'; + $it.errSchemaPath = $errSchemaPath + '/' + $i; + out += ' ' + (it.validate($it)) + ' '; + $it.baseId = $currentBaseId; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + } + } + if ($breakOnError) { + if ($allSchemasEmpty) { + out += ' if (true) { '; + } else { + out += ' ' + ($closingBraces.slice(0, -1)) + ' '; + } + } + out = it.util.cleanUpCode(out); + return out; +} + +},{}],18:[function(require,module,exports){ +'use strict'; +module.exports = function generate_anyOf(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + var $noEmptySchema = $schema.every(function($sch) { + return it.util.schemaHasRules($sch, it.RULES.all); + }); + if ($noEmptySchema) { + var $currentBaseId = $it.baseId; + out += ' var ' + ($errs) + ' = errors; var ' + ($valid) + ' = false; '; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + var arr1 = $schema; + if (arr1) { + var $sch, $i = -1, + l1 = arr1.length - 1; + while ($i < l1) { + $sch = arr1[$i += 1]; + $it.schema = $sch; + $it.schemaPath = $schemaPath + '[' + $i + ']'; + $it.errSchemaPath = $errSchemaPath + '/' + $i; + out += ' ' + (it.validate($it)) + ' '; + $it.baseId = $currentBaseId; + out += ' ' + ($valid) + ' = ' + ($valid) + ' || ' + ($nextValid) + '; if (!' + ($valid) + ') { '; + $closingBraces += '}'; + } + } + it.compositeRule = $it.compositeRule = $wasComposite; + out += ' ' + ($closingBraces) + ' if (!' + ($valid) + ') { var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('anyOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should match some schema in anyOf\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError(vErrors); '; + } else { + out += ' validate.errors = vErrors; return false; '; + } + } + out += ' } else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; + if (it.opts.allErrors) { + out += ' } '; + } + out = it.util.cleanUpCode(out); + } else { + if ($breakOnError) { + out += ' if (true) { '; + } + } + return out; +} + +},{}],19:[function(require,module,exports){ +'use strict'; +module.exports = function generate_const(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + if (!$isData) { + out += ' var schema' + ($lvl) + ' = validate.schema' + ($schemaPath) + ';'; + } + out += 'var ' + ($valid) + ' = equal(' + ($data) + ', schema' + ($lvl) + '); if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('const') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should be equal to constant\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' }'; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],20:[function(require,module,exports){ +'use strict'; +module.exports = function generate_contains(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + var $idx = 'i' + $lvl, + $dataNxt = $it.dataLevel = it.dataLevel + 1, + $nextData = 'data' + $dataNxt, + $currentBaseId = it.baseId, + $nonEmptySchema = it.util.schemaHasRules($schema, it.RULES.all); + out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; + if ($nonEmptySchema) { + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + $it.schema = $schema; + $it.schemaPath = $schemaPath; + $it.errSchemaPath = $errSchemaPath; + out += ' var ' + ($nextValid) + ' = false; for (var ' + ($idx) + ' = 0; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; + $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); + var $passData = $data + '[' + $idx + ']'; + $it.dataPathArr[$dataNxt] = $idx; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + out += ' if (' + ($nextValid) + ') break; } '; + it.compositeRule = $it.compositeRule = $wasComposite; + out += ' ' + ($closingBraces) + ' if (!' + ($nextValid) + ') {'; + } else { + out += ' if (' + ($data) + '.length == 0) {'; + } + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('contains') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should contain a valid item\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else { '; + if ($nonEmptySchema) { + out += ' errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; + } + if (it.opts.allErrors) { + out += ' } '; + } + out = it.util.cleanUpCode(out); + return out; +} + +},{}],21:[function(require,module,exports){ +'use strict'; +module.exports = function generate_custom(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $errorKeyword; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + var $rule = this, + $definition = 'definition' + $lvl, + $rDef = $rule.definition, + $closingBraces = ''; + var $compile, $inline, $macro, $ruleValidate, $validateCode; + if ($isData && $rDef.$data) { + $validateCode = 'keywordValidate' + $lvl; + var $validateSchema = $rDef.validateSchema; + out += ' var ' + ($definition) + ' = RULES.custom[\'' + ($keyword) + '\'].definition; var ' + ($validateCode) + ' = ' + ($definition) + '.validate;'; + } else { + $ruleValidate = it.useCustomRule($rule, $schema, it.schema, it); + if (!$ruleValidate) return; + $schemaValue = 'validate.schema' + $schemaPath; + $validateCode = $ruleValidate.code; + $compile = $rDef.compile; + $inline = $rDef.inline; + $macro = $rDef.macro; + } + var $ruleErrs = $validateCode + '.errors', + $i = 'i' + $lvl, + $ruleErr = 'ruleErr' + $lvl, + $asyncKeyword = $rDef.async; + if ($asyncKeyword && !it.async) throw new Error('async keyword in sync schema'); + if (!($inline || $macro)) { + out += '' + ($ruleErrs) + ' = null;'; + } + out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; + if ($isData && $rDef.$data) { + $closingBraces += '}'; + out += ' if (' + ($schemaValue) + ' === undefined) { ' + ($valid) + ' = true; } else { '; + if ($validateSchema) { + $closingBraces += '}'; + out += ' ' + ($valid) + ' = ' + ($definition) + '.validateSchema(' + ($schemaValue) + '); if (' + ($valid) + ') { '; + } + } + if ($inline) { + if ($rDef.statements) { + out += ' ' + ($ruleValidate.validate) + ' '; + } else { + out += ' ' + ($valid) + ' = ' + ($ruleValidate.validate) + '; '; + } + } else if ($macro) { + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + $it.schema = $ruleValidate.validate; + $it.schemaPath = ''; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + var $code = it.validate($it).replace(/validate\.schema/g, $validateCode); + it.compositeRule = $it.compositeRule = $wasComposite; + out += ' ' + ($code); + } else { + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; + out += ' ' + ($validateCode) + '.call( '; + if (it.opts.passContext) { + out += 'this'; + } else { + out += 'self'; + } + if ($compile || $rDef.schema === false) { + out += ' , ' + ($data) + ' '; + } else { + out += ' , ' + ($schemaValue) + ' , ' + ($data) + ' , validate.schema' + (it.schemaPath) + ' '; + } + out += ' , (dataPath || \'\')'; + if (it.errorPath != '""') { + out += ' + ' + (it.errorPath); + } + var $parentData = $dataLvl ? 'data' + (($dataLvl - 1) || '') : 'parentData', + $parentDataProperty = $dataLvl ? it.dataPathArr[$dataLvl] : 'parentDataProperty'; + out += ' , ' + ($parentData) + ' , ' + ($parentDataProperty) + ' , rootData ) '; + var def_callRuleValidate = out; + out = $$outStack.pop(); + if ($rDef.errors === false) { + out += ' ' + ($valid) + ' = '; + if ($asyncKeyword) { + out += '' + (it.yieldAwait); + } + out += '' + (def_callRuleValidate) + '; '; + } else { + if ($asyncKeyword) { + $ruleErrs = 'customErrors' + $lvl; + out += ' var ' + ($ruleErrs) + ' = null; try { ' + ($valid) + ' = ' + (it.yieldAwait) + (def_callRuleValidate) + '; } catch (e) { ' + ($valid) + ' = false; if (e instanceof ValidationError) ' + ($ruleErrs) + ' = e.errors; else throw e; } '; + } else { + out += ' ' + ($ruleErrs) + ' = null; ' + ($valid) + ' = ' + (def_callRuleValidate) + '; '; + } + } + } + if ($rDef.modifying) { + out += ' if (' + ($parentData) + ') ' + ($data) + ' = ' + ($parentData) + '[' + ($parentDataProperty) + '];'; + } + out += '' + ($closingBraces); + if ($rDef.valid) { + if ($breakOnError) { + out += ' if (true) { '; + } + } else { + out += ' if ( '; + if ($rDef.valid === undefined) { + out += ' !'; + if ($macro) { + out += '' + ($nextValid); + } else { + out += '' + ($valid); + } + } else { + out += ' ' + (!$rDef.valid) + ' '; + } + out += ') { '; + $errorKeyword = $rule.keyword; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || 'custom') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { keyword: \'' + ($rule.keyword) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should pass "' + ($rule.keyword) + '" keyword validation\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + var def_customError = out; + out = $$outStack.pop(); + if ($inline) { + if ($rDef.errors) { + if ($rDef.errors != 'full') { + out += ' for (var ' + ($i) + '=' + ($errs) + '; ' + ($i) + '= 0) { + if ($breakOnError) { + out += ' if (true) { '; + } + return out; + } else { + throw new Error('unknown format "' + $schema + '" is used in schema at path "' + it.errSchemaPath + '"'); + } + } + var $isObject = typeof $format == 'object' && !($format instanceof RegExp) && $format.validate; + var $formatType = $isObject && $format.type || 'string'; + if ($isObject) { + var $async = $format.async === true; + $format = $format.validate; + } + if ($formatType != $ruleType) { + if ($breakOnError) { + out += ' if (true) { '; + } + return out; + } + if ($async) { + if (!it.async) throw new Error('async format in sync schema'); + var $formatRef = 'formats' + it.util.getProperty($schema) + '.validate'; + out += ' if (!(' + (it.yieldAwait) + ' ' + ($formatRef) + '(' + ($data) + '))) { '; + } else { + out += ' if (! '; + var $formatRef = 'formats' + it.util.getProperty($schema); + if ($isObject) $formatRef += '.validate'; + if (typeof $format == 'function') { + out += ' ' + ($formatRef) + '(' + ($data) + ') '; + } else { + out += ' ' + ($formatRef) + '.test(' + ($data) + ') '; + } + out += ') { '; + } + } + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('format') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { format: '; + if ($isData) { + out += '' + ($schemaValue); + } else { + out += '' + (it.util.toQuotedString($schema)); + } + out += ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should match format "'; + if ($isData) { + out += '\' + ' + ($schemaValue) + ' + \''; + } else { + out += '' + (it.util.escapeQuotes($schema)); + } + out += '"\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + (it.util.toQuotedString($schema)); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],25:[function(require,module,exports){ +'use strict'; +module.exports = function generate_items(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + var $idx = 'i' + $lvl, + $dataNxt = $it.dataLevel = it.dataLevel + 1, + $nextData = 'data' + $dataNxt, + $currentBaseId = it.baseId; + out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; + if (Array.isArray($schema)) { + var $additionalItems = it.schema.additionalItems; + if ($additionalItems === false) { + out += ' ' + ($valid) + ' = ' + ($data) + '.length <= ' + ($schema.length) + '; '; + var $currErrSchemaPath = $errSchemaPath; + $errSchemaPath = it.errSchemaPath + '/additionalItems'; + out += ' if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('additionalItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schema.length) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have more than ' + ($schema.length) + ' items\' '; + } + if (it.opts.verbose) { + out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + $errSchemaPath = $currErrSchemaPath; + if ($breakOnError) { + $closingBraces += '}'; + out += ' else { '; + } + } + var arr1 = $schema; + if (arr1) { + var $sch, $i = -1, + l1 = arr1.length - 1; + while ($i < l1) { + $sch = arr1[$i += 1]; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + out += ' ' + ($nextValid) + ' = true; if (' + ($data) + '.length > ' + ($i) + ') { '; + var $passData = $data + '[' + $i + ']'; + $it.schema = $sch; + $it.schemaPath = $schemaPath + '[' + $i + ']'; + $it.errSchemaPath = $errSchemaPath + '/' + $i; + $it.errorPath = it.util.getPathExpr(it.errorPath, $i, it.opts.jsonPointers, true); + $it.dataPathArr[$dataNxt] = $i; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + out += ' } '; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + } + } + if (typeof $additionalItems == 'object' && it.util.schemaHasRules($additionalItems, it.RULES.all)) { + $it.schema = $additionalItems; + $it.schemaPath = it.schemaPath + '.additionalItems'; + $it.errSchemaPath = it.errSchemaPath + '/additionalItems'; + out += ' ' + ($nextValid) + ' = true; if (' + ($data) + '.length > ' + ($schema.length) + ') { for (var ' + ($idx) + ' = ' + ($schema.length) + '; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; + $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); + var $passData = $data + '[' + $idx + ']'; + $it.dataPathArr[$dataNxt] = $idx; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + if ($breakOnError) { + out += ' if (!' + ($nextValid) + ') break; '; + } + out += ' } } '; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + } else if (it.util.schemaHasRules($schema, it.RULES.all)) { + $it.schema = $schema; + $it.schemaPath = $schemaPath; + $it.errSchemaPath = $errSchemaPath; + out += ' for (var ' + ($idx) + ' = ' + (0) + '; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; + $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); + var $passData = $data + '[' + $idx + ']'; + $it.dataPathArr[$dataNxt] = $idx; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + if ($breakOnError) { + out += ' if (!' + ($nextValid) + ') break; '; + } + out += ' }'; + } + if ($breakOnError) { + out += ' ' + ($closingBraces) + ' if (' + ($errs) + ' == errors) {'; + } + out = it.util.cleanUpCode(out); + return out; +} + +},{}],26:[function(require,module,exports){ +'use strict'; +module.exports = function generate_multipleOf(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + out += 'var division' + ($lvl) + ';if ('; + if ($isData) { + out += ' ' + ($schemaValue) + ' !== undefined && ( typeof ' + ($schemaValue) + ' != \'number\' || '; + } + out += ' (division' + ($lvl) + ' = ' + ($data) + ' / ' + ($schemaValue) + ', '; + if (it.opts.multipleOfPrecision) { + out += ' Math.abs(Math.round(division' + ($lvl) + ') - division' + ($lvl) + ') > 1e-' + (it.opts.multipleOfPrecision) + ' '; + } else { + out += ' division' + ($lvl) + ' !== parseInt(division' + ($lvl) + ') '; + } + out += ' ) '; + if ($isData) { + out += ' ) '; + } + out += ' ) { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('multipleOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { multipleOf: ' + ($schemaValue) + ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should be multiple of '; + if ($isData) { + out += '\' + ' + ($schemaValue); + } else { + out += '' + ($schemaValue) + '\''; + } + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += '} '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],27:[function(require,module,exports){ +'use strict'; +module.exports = function generate_not(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + $it.level++; + var $nextValid = 'valid' + $it.level; + if (it.util.schemaHasRules($schema, it.RULES.all)) { + $it.schema = $schema; + $it.schemaPath = $schemaPath; + $it.errSchemaPath = $errSchemaPath; + out += ' var ' + ($errs) + ' = errors; '; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + $it.createErrors = false; + var $allErrorsOption; + if ($it.opts.allErrors) { + $allErrorsOption = $it.opts.allErrors; + $it.opts.allErrors = false; + } + out += ' ' + (it.validate($it)) + ' '; + $it.createErrors = true; + if ($allErrorsOption) $it.opts.allErrors = $allErrorsOption; + it.compositeRule = $it.compositeRule = $wasComposite; + out += ' if (' + ($nextValid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('not') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT be valid\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; + if (it.opts.allErrors) { + out += ' } '; + } + } else { + out += ' var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('not') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT be valid\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + if ($breakOnError) { + out += ' if (false) { '; + } + } + return out; +} + +},{}],28:[function(require,module,exports){ +'use strict'; +module.exports = function generate_oneOf(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + out += 'var ' + ($errs) + ' = errors;var prevValid' + ($lvl) + ' = false;var ' + ($valid) + ' = false;'; + var $currentBaseId = $it.baseId; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + var arr1 = $schema; + if (arr1) { + var $sch, $i = -1, + l1 = arr1.length - 1; + while ($i < l1) { + $sch = arr1[$i += 1]; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + $it.schema = $sch; + $it.schemaPath = $schemaPath + '[' + $i + ']'; + $it.errSchemaPath = $errSchemaPath + '/' + $i; + out += ' ' + (it.validate($it)) + ' '; + $it.baseId = $currentBaseId; + } else { + out += ' var ' + ($nextValid) + ' = true; '; + } + if ($i) { + out += ' if (' + ($nextValid) + ' && prevValid' + ($lvl) + ') ' + ($valid) + ' = false; else { '; + $closingBraces += '}'; + } + out += ' if (' + ($nextValid) + ') ' + ($valid) + ' = prevValid' + ($lvl) + ' = true;'; + } + } + it.compositeRule = $it.compositeRule = $wasComposite; + out += '' + ($closingBraces) + 'if (!' + ($valid) + ') { var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('oneOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'should match exactly one schema in oneOf\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError(vErrors); '; + } else { + out += ' validate.errors = vErrors; return false; '; + } + } + out += '} else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; }'; + if (it.opts.allErrors) { + out += ' } '; + } + return out; +} + +},{}],29:[function(require,module,exports){ +'use strict'; +module.exports = function generate_pattern(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + var $regexp = $isData ? '(new RegExp(' + $schemaValue + '))' : it.usePattern($schema); + out += 'if ( '; + if ($isData) { + out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'string\') || '; + } + out += ' !' + ($regexp) + '.test(' + ($data) + ') ) { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('pattern') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { pattern: '; + if ($isData) { + out += '' + ($schemaValue); + } else { + out += '' + (it.util.toQuotedString($schema)); + } + out += ' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should match pattern "'; + if ($isData) { + out += '\' + ' + ($schemaValue) + ' + \''; + } else { + out += '' + (it.util.escapeQuotes($schema)); + } + out += '"\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + (it.util.toQuotedString($schema)); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += '} '; + if ($breakOnError) { + out += ' else { '; + } + return out; +} + +},{}],30:[function(require,module,exports){ +'use strict'; +module.exports = function generate_properties(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + var $key = 'key' + $lvl, + $idx = 'idx' + $lvl, + $dataNxt = $it.dataLevel = it.dataLevel + 1, + $nextData = 'data' + $dataNxt, + $dataProperties = 'dataProperties' + $lvl; + var $schemaKeys = Object.keys($schema || {}), + $pProperties = it.schema.patternProperties || {}, + $pPropertyKeys = Object.keys($pProperties), + $aProperties = it.schema.additionalProperties, + $someProperties = $schemaKeys.length || $pPropertyKeys.length, + $noAdditional = $aProperties === false, + $additionalIsSchema = typeof $aProperties == 'object' && Object.keys($aProperties).length, + $removeAdditional = it.opts.removeAdditional, + $checkAdditional = $noAdditional || $additionalIsSchema || $removeAdditional, + $ownProperties = it.opts.ownProperties, + $currentBaseId = it.baseId; + var $required = it.schema.required; + if ($required && !(it.opts.v5 && $required.$data) && $required.length < it.opts.loopRequired) var $requiredHash = it.util.toHash($required); + if (it.opts.patternGroups) { + var $pgProperties = it.schema.patternGroups || {}, + $pgPropertyKeys = Object.keys($pgProperties); + } + out += 'var ' + ($errs) + ' = errors;var ' + ($nextValid) + ' = true;'; + if ($ownProperties) { + out += ' var ' + ($dataProperties) + ' = undefined;'; + } + if ($checkAdditional) { + if ($ownProperties) { + out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; + } else { + out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; + } + if ($someProperties) { + out += ' var isAdditional' + ($lvl) + ' = !(false '; + if ($schemaKeys.length) { + if ($schemaKeys.length > 5) { + out += ' || validate.schema' + ($schemaPath) + '[' + ($key) + '] '; + } else { + var arr1 = $schemaKeys; + if (arr1) { + var $propertyKey, i1 = -1, + l1 = arr1.length - 1; + while (i1 < l1) { + $propertyKey = arr1[i1 += 1]; + out += ' || ' + ($key) + ' == ' + (it.util.toQuotedString($propertyKey)) + ' '; + } + } + } + } + if ($pPropertyKeys.length) { + var arr2 = $pPropertyKeys; + if (arr2) { + var $pProperty, $i = -1, + l2 = arr2.length - 1; + while ($i < l2) { + $pProperty = arr2[$i += 1]; + out += ' || ' + (it.usePattern($pProperty)) + '.test(' + ($key) + ') '; + } + } + } + if (it.opts.patternGroups && $pgPropertyKeys.length) { + var arr3 = $pgPropertyKeys; + if (arr3) { + var $pgProperty, $i = -1, + l3 = arr3.length - 1; + while ($i < l3) { + $pgProperty = arr3[$i += 1]; + out += ' || ' + (it.usePattern($pgProperty)) + '.test(' + ($key) + ') '; + } + } + } + out += ' ); if (isAdditional' + ($lvl) + ') { '; + } + if ($removeAdditional == 'all') { + out += ' delete ' + ($data) + '[' + ($key) + ']; '; + } else { + var $currentErrorPath = it.errorPath; + var $additionalProperty = '\' + ' + $key + ' + \''; + if (it.opts._errorDataPathProperty) { + it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); + } + if ($noAdditional) { + if ($removeAdditional) { + out += ' delete ' + ($data) + '[' + ($key) + ']; '; + } else { + out += ' ' + ($nextValid) + ' = false; '; + var $currErrSchemaPath = $errSchemaPath; + $errSchemaPath = it.errSchemaPath + '/additionalProperties'; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('additionalProperties') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { additionalProperty: \'' + ($additionalProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have additional properties\' '; + } + if (it.opts.verbose) { + out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + $errSchemaPath = $currErrSchemaPath; + if ($breakOnError) { + out += ' break; '; + } + } + } else if ($additionalIsSchema) { + if ($removeAdditional == 'failing') { + out += ' var ' + ($errs) + ' = errors; '; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + $it.schema = $aProperties; + $it.schemaPath = it.schemaPath + '.additionalProperties'; + $it.errSchemaPath = it.errSchemaPath + '/additionalProperties'; + $it.errorPath = it.opts._errorDataPathProperty ? it.errorPath : it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); + var $passData = $data + '[' + $key + ']'; + $it.dataPathArr[$dataNxt] = $key; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + out += ' if (!' + ($nextValid) + ') { errors = ' + ($errs) + '; if (validate.errors !== null) { if (errors) validate.errors.length = errors; else validate.errors = null; } delete ' + ($data) + '[' + ($key) + ']; } '; + it.compositeRule = $it.compositeRule = $wasComposite; + } else { + $it.schema = $aProperties; + $it.schemaPath = it.schemaPath + '.additionalProperties'; + $it.errSchemaPath = it.errSchemaPath + '/additionalProperties'; + $it.errorPath = it.opts._errorDataPathProperty ? it.errorPath : it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); + var $passData = $data + '[' + $key + ']'; + $it.dataPathArr[$dataNxt] = $key; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + if ($breakOnError) { + out += ' if (!' + ($nextValid) + ') break; '; + } + } + } + it.errorPath = $currentErrorPath; + } + if ($someProperties) { + out += ' } '; + } + out += ' } '; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + var $useDefaults = it.opts.useDefaults && !it.compositeRule; + if ($schemaKeys.length) { + var arr4 = $schemaKeys; + if (arr4) { + var $propertyKey, i4 = -1, + l4 = arr4.length - 1; + while (i4 < l4) { + $propertyKey = arr4[i4 += 1]; + var $sch = $schema[$propertyKey]; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + var $prop = it.util.getProperty($propertyKey), + $passData = $data + $prop, + $hasDefault = $useDefaults && $sch.default !== undefined; + $it.schema = $sch; + $it.schemaPath = $schemaPath + $prop; + $it.errSchemaPath = $errSchemaPath + '/' + it.util.escapeFragment($propertyKey); + $it.errorPath = it.util.getPath(it.errorPath, $propertyKey, it.opts.jsonPointers); + $it.dataPathArr[$dataNxt] = it.util.toQuotedString($propertyKey); + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + $code = it.util.varReplace($code, $nextData, $passData); + var $useData = $passData; + } else { + var $useData = $nextData; + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; '; + } + if ($hasDefault) { + out += ' ' + ($code) + ' '; + } else { + if ($requiredHash && $requiredHash[$propertyKey]) { + out += ' if ( ' + ($useData) + ' === undefined '; + if ($ownProperties) { + out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; + } + out += ') { ' + ($nextValid) + ' = false; '; + var $currentErrorPath = it.errorPath, + $currErrSchemaPath = $errSchemaPath, + $missingProperty = it.util.escapeQuotes($propertyKey); + if (it.opts._errorDataPathProperty) { + it.errorPath = it.util.getPath($currentErrorPath, $propertyKey, it.opts.jsonPointers); + } + $errSchemaPath = it.errSchemaPath + '/required'; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + $errSchemaPath = $currErrSchemaPath; + it.errorPath = $currentErrorPath; + out += ' } else { '; + } else { + if ($breakOnError) { + out += ' if ( ' + ($useData) + ' === undefined '; + if ($ownProperties) { + out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; + } + out += ') { ' + ($nextValid) + ' = true; } else { '; + } else { + out += ' if (' + ($useData) + ' !== undefined '; + if ($ownProperties) { + out += ' && Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; + } + out += ' ) { '; + } + } + out += ' ' + ($code) + ' } '; + } + } + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + } + } + if ($pPropertyKeys.length) { + var arr5 = $pPropertyKeys; + if (arr5) { + var $pProperty, i5 = -1, + l5 = arr5.length - 1; + while (i5 < l5) { + $pProperty = arr5[i5 += 1]; + var $sch = $pProperties[$pProperty]; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + $it.schema = $sch; + $it.schemaPath = it.schemaPath + '.patternProperties' + it.util.getProperty($pProperty); + $it.errSchemaPath = it.errSchemaPath + '/patternProperties/' + it.util.escapeFragment($pProperty); + if ($ownProperties) { + out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; + } else { + out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; + } + out += ' if (' + (it.usePattern($pProperty)) + '.test(' + ($key) + ')) { '; + $it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); + var $passData = $data + '[' + $key + ']'; + $it.dataPathArr[$dataNxt] = $key; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + if ($breakOnError) { + out += ' if (!' + ($nextValid) + ') break; '; + } + out += ' } '; + if ($breakOnError) { + out += ' else ' + ($nextValid) + ' = true; '; + } + out += ' } '; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + } + } + } + } + if (it.opts.patternGroups && $pgPropertyKeys.length) { + var arr6 = $pgPropertyKeys; + if (arr6) { + var $pgProperty, i6 = -1, + l6 = arr6.length - 1; + while (i6 < l6) { + $pgProperty = arr6[i6 += 1]; + var $pgSchema = $pgProperties[$pgProperty], + $sch = $pgSchema.schema; + if (it.util.schemaHasRules($sch, it.RULES.all)) { + $it.schema = $sch; + $it.schemaPath = it.schemaPath + '.patternGroups' + it.util.getProperty($pgProperty) + '.schema'; + $it.errSchemaPath = it.errSchemaPath + '/patternGroups/' + it.util.escapeFragment($pgProperty) + '/schema'; + out += ' var pgPropCount' + ($lvl) + ' = 0; '; + if ($ownProperties) { + out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; + } else { + out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; + } + out += ' if (' + (it.usePattern($pgProperty)) + '.test(' + ($key) + ')) { pgPropCount' + ($lvl) + '++; '; + $it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); + var $passData = $data + '[' + $key + ']'; + $it.dataPathArr[$dataNxt] = $key; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + if ($breakOnError) { + out += ' if (!' + ($nextValid) + ') break; '; + } + out += ' } '; + if ($breakOnError) { + out += ' else ' + ($nextValid) + ' = true; '; + } + out += ' } '; + if ($breakOnError) { + out += ' if (' + ($nextValid) + ') { '; + $closingBraces += '}'; + } + var $pgMin = $pgSchema.minimum, + $pgMax = $pgSchema.maximum; + if ($pgMin !== undefined || $pgMax !== undefined) { + out += ' var ' + ($valid) + ' = true; '; + var $currErrSchemaPath = $errSchemaPath; + if ($pgMin !== undefined) { + var $limit = $pgMin, + $reason = 'minimum', + $moreOrLess = 'less'; + out += ' ' + ($valid) + ' = pgPropCount' + ($lvl) + ' >= ' + ($pgMin) + '; '; + $errSchemaPath = it.errSchemaPath + '/patternGroups/minimum'; + out += ' if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('patternGroups') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { reason: \'' + ($reason) + '\', limit: ' + ($limit) + ', pattern: \'' + (it.util.escapeQuotes($pgProperty)) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have ' + ($moreOrLess) + ' than ' + ($limit) + ' properties matching pattern "' + (it.util.escapeQuotes($pgProperty)) + '"\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + if ($pgMax !== undefined) { + out += ' else '; + } + } + if ($pgMax !== undefined) { + var $limit = $pgMax, + $reason = 'maximum', + $moreOrLess = 'more'; + out += ' ' + ($valid) + ' = pgPropCount' + ($lvl) + ' <= ' + ($pgMax) + '; '; + $errSchemaPath = it.errSchemaPath + '/patternGroups/maximum'; + out += ' if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('patternGroups') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { reason: \'' + ($reason) + '\', limit: ' + ($limit) + ', pattern: \'' + (it.util.escapeQuotes($pgProperty)) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have ' + ($moreOrLess) + ' than ' + ($limit) + ' properties matching pattern "' + (it.util.escapeQuotes($pgProperty)) + '"\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + } + $errSchemaPath = $currErrSchemaPath; + if ($breakOnError) { + out += ' if (' + ($valid) + ') { '; + $closingBraces += '}'; + } + } + } + } + } + } + if ($breakOnError) { + out += ' ' + ($closingBraces) + ' if (' + ($errs) + ' == errors) {'; + } + out = it.util.cleanUpCode(out); + return out; +} + +},{}],31:[function(require,module,exports){ +'use strict'; +module.exports = function generate_propertyNames(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $errs = 'errs__' + $lvl; + var $it = it.util.copy(it); + var $closingBraces = ''; + $it.level++; + var $nextValid = 'valid' + $it.level; + if (it.util.schemaHasRules($schema, it.RULES.all)) { + $it.schema = $schema; + $it.schemaPath = $schemaPath; + $it.errSchemaPath = $errSchemaPath; + var $key = 'key' + $lvl, + $idx = 'idx' + $lvl, + $i = 'i' + $lvl, + $invalidName = '\' + ' + $key + ' + \'', + $dataNxt = $it.dataLevel = it.dataLevel + 1, + $nextData = 'data' + $dataNxt, + $dataProperties = 'dataProperties' + $lvl, + $ownProperties = it.opts.ownProperties, + $currentBaseId = it.baseId; + out += ' var ' + ($errs) + ' = errors; '; + if ($ownProperties) { + out += ' var ' + ($dataProperties) + ' = undefined; '; + } + if ($ownProperties) { + out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; + } else { + out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; + } + out += ' var startErrs' + ($lvl) + ' = errors; '; + var $passData = $key; + var $wasComposite = it.compositeRule; + it.compositeRule = $it.compositeRule = true; + var $code = it.validate($it); + $it.baseId = $currentBaseId; + if (it.util.varOccurences($code, $nextData) < 2) { + out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; + } else { + out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; + } + it.compositeRule = $it.compositeRule = $wasComposite; + out += ' if (!' + ($nextValid) + ') { for (var ' + ($i) + '=startErrs' + ($lvl) + '; ' + ($i) + '= it.opts.loopRequired, + $ownProperties = it.opts.ownProperties; + if ($breakOnError) { + out += ' var missing' + ($lvl) + '; '; + if ($loopRequired) { + if (!$isData) { + out += ' var ' + ($vSchema) + ' = validate.schema' + ($schemaPath) + '; '; + } + var $i = 'i' + $lvl, + $propertyPath = 'schema' + $lvl + '[' + $i + ']', + $missingProperty = '\' + ' + $propertyPath + ' + \''; + if (it.opts._errorDataPathProperty) { + it.errorPath = it.util.getPathExpr($currentErrorPath, $propertyPath, it.opts.jsonPointers); + } + out += ' var ' + ($valid) + ' = true; '; + if ($isData) { + out += ' if (schema' + ($lvl) + ' === undefined) ' + ($valid) + ' = true; else if (!Array.isArray(schema' + ($lvl) + ')) ' + ($valid) + ' = false; else {'; + } + out += ' for (var ' + ($i) + ' = 0; ' + ($i) + ' < ' + ($vSchema) + '.length; ' + ($i) + '++) { ' + ($valid) + ' = ' + ($data) + '[' + ($vSchema) + '[' + ($i) + ']] !== undefined '; + if ($ownProperties) { + out += ' && Object.prototype.hasOwnProperty.call(' + ($data) + ', ' + ($vSchema) + '[' + ($i) + ']) '; + } + out += '; if (!' + ($valid) + ') break; } '; + if ($isData) { + out += ' } '; + } + out += ' if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else { '; + } else { + out += ' if ( '; + var arr2 = $required; + if (arr2) { + var $propertyKey, $i = -1, + l2 = arr2.length - 1; + while ($i < l2) { + $propertyKey = arr2[$i += 1]; + if ($i) { + out += ' || '; + } + var $prop = it.util.getProperty($propertyKey), + $useData = $data + $prop; + out += ' ( ( ' + ($useData) + ' === undefined '; + if ($ownProperties) { + out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; + } + out += ') && (missing' + ($lvl) + ' = ' + (it.util.toQuotedString(it.opts.jsonPointers ? $propertyKey : $prop)) + ') ) '; + } + } + out += ') { '; + var $propertyPath = 'missing' + $lvl, + $missingProperty = '\' + ' + $propertyPath + ' + \''; + if (it.opts._errorDataPathProperty) { + it.errorPath = it.opts.jsonPointers ? it.util.getPathExpr($currentErrorPath, $propertyPath, true) : $currentErrorPath + ' + ' + $propertyPath; + } + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else { '; + } + } else { + if ($loopRequired) { + if (!$isData) { + out += ' var ' + ($vSchema) + ' = validate.schema' + ($schemaPath) + '; '; + } + var $i = 'i' + $lvl, + $propertyPath = 'schema' + $lvl + '[' + $i + ']', + $missingProperty = '\' + ' + $propertyPath + ' + \''; + if (it.opts._errorDataPathProperty) { + it.errorPath = it.util.getPathExpr($currentErrorPath, $propertyPath, it.opts.jsonPointers); + } + if ($isData) { + out += ' if (' + ($vSchema) + ' && !Array.isArray(' + ($vSchema) + ')) { var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } else if (' + ($vSchema) + ' !== undefined) { '; + } + out += ' for (var ' + ($i) + ' = 0; ' + ($i) + ' < ' + ($vSchema) + '.length; ' + ($i) + '++) { if (' + ($data) + '[' + ($vSchema) + '[' + ($i) + ']] === undefined '; + if ($ownProperties) { + out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', ' + ($vSchema) + '[' + ($i) + ']) '; + } + out += ') { var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } } '; + if ($isData) { + out += ' } '; + } + } else { + var arr3 = $required; + if (arr3) { + var $propertyKey, i3 = -1, + l3 = arr3.length - 1; + while (i3 < l3) { + $propertyKey = arr3[i3 += 1]; + var $prop = it.util.getProperty($propertyKey), + $missingProperty = it.util.escapeQuotes($propertyKey), + $useData = $data + $prop; + if (it.opts._errorDataPathProperty) { + it.errorPath = it.util.getPath($currentErrorPath, $propertyKey, it.opts.jsonPointers); + } + out += ' if ( ' + ($useData) + ' === undefined '; + if ($ownProperties) { + out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; + } + out += ') { var err = '; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \''; + if (it.opts._errorDataPathProperty) { + out += 'is a required property'; + } else { + out += 'should have required property \\\'' + ($missingProperty) + '\\\''; + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } '; + } + } + } + } + it.errorPath = $currentErrorPath; + } else if ($breakOnError) { + out += ' if (true) {'; + } + return out; +} + +},{}],34:[function(require,module,exports){ +'use strict'; +module.exports = function generate_uniqueItems(it, $keyword, $ruleType) { + var out = ' '; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + var $isData = it.opts.$data && $schema && $schema.$data, + $schemaValue; + if ($isData) { + out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; + $schemaValue = 'schema' + $lvl; + } else { + $schemaValue = $schema; + } + if (($schema || $isData) && it.opts.uniqueItems !== false) { + if ($isData) { + out += ' var ' + ($valid) + '; if (' + ($schemaValue) + ' === false || ' + ($schemaValue) + ' === undefined) ' + ($valid) + ' = true; else if (typeof ' + ($schemaValue) + ' != \'boolean\') ' + ($valid) + ' = false; else { '; + } + out += ' var ' + ($valid) + ' = true; if (' + ($data) + '.length > 1) { var i = ' + ($data) + '.length, j; outer: for (;i--;) { for (j = i; j--;) { if (equal(' + ($data) + '[i], ' + ($data) + '[j])) { ' + ($valid) + ' = false; break outer; } } } } '; + if ($isData) { + out += ' } '; + } + out += ' if (!' + ($valid) + ') { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ('uniqueItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { i: i, j: j } '; + if (it.opts.messages !== false) { + out += ' , message: \'should NOT have duplicate items (items ## \' + j + \' and \' + i + \' are identical)\' '; + } + if (it.opts.verbose) { + out += ' , schema: '; + if ($isData) { + out += 'validate.schema' + ($schemaPath); + } else { + out += '' + ($schema); + } + out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + if ($breakOnError) { + out += ' else { '; + } + } else { + if ($breakOnError) { + out += ' if (true) { '; + } + } + return out; +} + +},{}],35:[function(require,module,exports){ +'use strict'; +module.exports = function generate_validate(it, $keyword, $ruleType) { + var out = ''; + var $async = it.schema.$async === true, + $refKeywords = it.util.schemaHasRulesExcept(it.schema, it.RULES.all, '$ref'), + $id = it.self._getId(it.schema); + if (it.isTop) { + if ($async) { + it.async = true; + var $es7 = it.opts.async == 'es7'; + it.yieldAwait = $es7 ? 'await' : 'yield'; + } + out += ' var validate = '; + if ($async) { + if ($es7) { + out += ' (async function '; + } else { + if (it.opts.async != '*') { + out += 'co.wrap'; + } + out += '(function* '; + } + } else { + out += ' (function '; + } + out += ' (data, dataPath, parentData, parentDataProperty, rootData) { \'use strict\'; '; + if ($id && (it.opts.sourceCode || it.opts.processCode)) { + out += ' ' + ('/\*# sourceURL=' + $id + ' */') + ' '; + } + } + if (typeof it.schema == 'boolean' || !($refKeywords || it.schema.$ref)) { + var $keyword = 'false schema'; + var $lvl = it.level; + var $dataLvl = it.dataLevel; + var $schema = it.schema[$keyword]; + var $schemaPath = it.schemaPath + it.util.getProperty($keyword); + var $errSchemaPath = it.errSchemaPath + '/' + $keyword; + var $breakOnError = !it.opts.allErrors; + var $errorKeyword; + var $data = 'data' + ($dataLvl || ''); + var $valid = 'valid' + $lvl; + if (it.schema === false) { + if (it.isTop) { + $breakOnError = true; + } else { + out += ' var ' + ($valid) + ' = false; '; + } + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || 'false schema') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; + if (it.opts.messages !== false) { + out += ' , message: \'boolean schema is false\' '; + } + if (it.opts.verbose) { + out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + } else { + if (it.isTop) { + if ($async) { + out += ' return data; '; + } else { + out += ' validate.errors = null; return true; '; + } + } else { + out += ' var ' + ($valid) + ' = true; '; + } + } + if (it.isTop) { + out += ' }); return validate; '; + } + return out; + } + if (it.isTop) { + var $top = it.isTop, + $lvl = it.level = 0, + $dataLvl = it.dataLevel = 0, + $data = 'data'; + it.rootId = it.resolve.fullPath(it.self._getId(it.root.schema)); + it.baseId = it.baseId || it.rootId; + delete it.isTop; + it.dataPathArr = [undefined]; + out += ' var vErrors = null; '; + out += ' var errors = 0; '; + out += ' if (rootData === undefined) rootData = data; '; + } else { + var $lvl = it.level, + $dataLvl = it.dataLevel, + $data = 'data' + ($dataLvl || ''); + if ($id) it.baseId = it.resolve.url(it.baseId, $id); + if ($async && !it.async) throw new Error('async schema in sync schema'); + out += ' var errs_' + ($lvl) + ' = errors;'; + } + var $valid = 'valid' + $lvl, + $breakOnError = !it.opts.allErrors, + $closingBraces1 = '', + $closingBraces2 = ''; + var $errorKeyword; + var $typeSchema = it.schema.type, + $typeIsArray = Array.isArray($typeSchema); + if ($typeIsArray && $typeSchema.length == 1) { + $typeSchema = $typeSchema[0]; + $typeIsArray = false; + } + if (it.schema.$ref && $refKeywords) { + if (it.opts.extendRefs == 'fail') { + throw new Error('$ref: validation keywords used in schema at path "' + it.errSchemaPath + '" (see option extendRefs)'); + } else if (it.opts.extendRefs !== true) { + $refKeywords = false; + console.warn('$ref: keywords ignored in schema at path "' + it.errSchemaPath + '"'); + } + } + if ($typeSchema) { + if (it.opts.coerceTypes) { + var $coerceToTypes = it.util.coerceToTypes(it.opts.coerceTypes, $typeSchema); + } + var $rulesGroup = it.RULES.types[$typeSchema]; + if ($coerceToTypes || $typeIsArray || $rulesGroup === true || ($rulesGroup && !$shouldUseGroup($rulesGroup))) { + var $schemaPath = it.schemaPath + '.type', + $errSchemaPath = it.errSchemaPath + '/type'; + var $schemaPath = it.schemaPath + '.type', + $errSchemaPath = it.errSchemaPath + '/type', + $method = $typeIsArray ? 'checkDataTypes' : 'checkDataType'; + out += ' if (' + (it.util[$method]($typeSchema, $data, true)) + ') { '; + if ($coerceToTypes) { + var $dataType = 'dataType' + $lvl, + $coerced = 'coerced' + $lvl; + out += ' var ' + ($dataType) + ' = typeof ' + ($data) + '; '; + if (it.opts.coerceTypes == 'array') { + out += ' if (' + ($dataType) + ' == \'object\' && Array.isArray(' + ($data) + ')) ' + ($dataType) + ' = \'array\'; '; + } + out += ' var ' + ($coerced) + ' = undefined; '; + var $bracesCoercion = ''; + var arr1 = $coerceToTypes; + if (arr1) { + var $type, $i = -1, + l1 = arr1.length - 1; + while ($i < l1) { + $type = arr1[$i += 1]; + if ($i) { + out += ' if (' + ($coerced) + ' === undefined) { '; + $bracesCoercion += '}'; + } + if (it.opts.coerceTypes == 'array' && $type != 'array') { + out += ' if (' + ($dataType) + ' == \'array\' && ' + ($data) + '.length == 1) { ' + ($coerced) + ' = ' + ($data) + ' = ' + ($data) + '[0]; ' + ($dataType) + ' = typeof ' + ($data) + '; } '; + } + if ($type == 'string') { + out += ' if (' + ($dataType) + ' == \'number\' || ' + ($dataType) + ' == \'boolean\') ' + ($coerced) + ' = \'\' + ' + ($data) + '; else if (' + ($data) + ' === null) ' + ($coerced) + ' = \'\'; '; + } else if ($type == 'number' || $type == 'integer') { + out += ' if (' + ($dataType) + ' == \'boolean\' || ' + ($data) + ' === null || (' + ($dataType) + ' == \'string\' && ' + ($data) + ' && ' + ($data) + ' == +' + ($data) + ' '; + if ($type == 'integer') { + out += ' && !(' + ($data) + ' % 1)'; + } + out += ')) ' + ($coerced) + ' = +' + ($data) + '; '; + } else if ($type == 'boolean') { + out += ' if (' + ($data) + ' === \'false\' || ' + ($data) + ' === 0 || ' + ($data) + ' === null) ' + ($coerced) + ' = false; else if (' + ($data) + ' === \'true\' || ' + ($data) + ' === 1) ' + ($coerced) + ' = true; '; + } else if ($type == 'null') { + out += ' if (' + ($data) + ' === \'\' || ' + ($data) + ' === 0 || ' + ($data) + ' === false) ' + ($coerced) + ' = null; '; + } else if (it.opts.coerceTypes == 'array' && $type == 'array') { + out += ' if (' + ($dataType) + ' == \'string\' || ' + ($dataType) + ' == \'number\' || ' + ($dataType) + ' == \'boolean\' || ' + ($data) + ' == null) ' + ($coerced) + ' = [' + ($data) + ']; '; + } + } + } + out += ' ' + ($bracesCoercion) + ' if (' + ($coerced) + ' === undefined) { '; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should be '; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } else { '; + var $parentData = $dataLvl ? 'data' + (($dataLvl - 1) || '') : 'parentData', + $parentDataProperty = $dataLvl ? it.dataPathArr[$dataLvl] : 'parentDataProperty'; + out += ' ' + ($data) + ' = ' + ($coerced) + '; '; + if (!$dataLvl) { + out += 'if (' + ($parentData) + ' !== undefined)'; + } + out += ' ' + ($parentData) + '[' + ($parentDataProperty) + '] = ' + ($coerced) + '; } '; + } else { + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should be '; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + } + out += ' } '; + } + } + if (it.schema.$ref && !$refKeywords) { + out += ' ' + (it.RULES.all.$ref.code(it, '$ref')) + ' '; + if ($breakOnError) { + out += ' } if (errors === '; + if ($top) { + out += '0'; + } else { + out += 'errs_' + ($lvl); + } + out += ') { '; + $closingBraces2 += '}'; + } + } else { + if (it.opts.v5 && it.schema.patternGroups) { + console.warn('keyword "patternGroups" is deprecated and disabled. Use option patternGroups: true to enable.'); + } + var arr2 = it.RULES; + if (arr2) { + var $rulesGroup, i2 = -1, + l2 = arr2.length - 1; + while (i2 < l2) { + $rulesGroup = arr2[i2 += 1]; + if ($shouldUseGroup($rulesGroup)) { + if ($rulesGroup.type) { + out += ' if (' + (it.util.checkDataType($rulesGroup.type, $data)) + ') { '; + } + if (it.opts.useDefaults && !it.compositeRule) { + if ($rulesGroup.type == 'object' && it.schema.properties) { + var $schema = it.schema.properties, + $schemaKeys = Object.keys($schema); + var arr3 = $schemaKeys; + if (arr3) { + var $propertyKey, i3 = -1, + l3 = arr3.length - 1; + while (i3 < l3) { + $propertyKey = arr3[i3 += 1]; + var $sch = $schema[$propertyKey]; + if ($sch.default !== undefined) { + var $passData = $data + it.util.getProperty($propertyKey); + out += ' if (' + ($passData) + ' === undefined) ' + ($passData) + ' = '; + if (it.opts.useDefaults == 'shared') { + out += ' ' + (it.useDefault($sch.default)) + ' '; + } else { + out += ' ' + (JSON.stringify($sch.default)) + ' '; + } + out += '; '; + } + } + } + } else if ($rulesGroup.type == 'array' && Array.isArray(it.schema.items)) { + var arr4 = it.schema.items; + if (arr4) { + var $sch, $i = -1, + l4 = arr4.length - 1; + while ($i < l4) { + $sch = arr4[$i += 1]; + if ($sch.default !== undefined) { + var $passData = $data + '[' + $i + ']'; + out += ' if (' + ($passData) + ' === undefined) ' + ($passData) + ' = '; + if (it.opts.useDefaults == 'shared') { + out += ' ' + (it.useDefault($sch.default)) + ' '; + } else { + out += ' ' + (JSON.stringify($sch.default)) + ' '; + } + out += '; '; + } + } + } + } + } + var arr5 = $rulesGroup.rules; + if (arr5) { + var $rule, i5 = -1, + l5 = arr5.length - 1; + while (i5 < l5) { + $rule = arr5[i5 += 1]; + if ($shouldUseRule($rule)) { + var $code = $rule.code(it, $rule.keyword, $rulesGroup.type); + if ($code) { + out += ' ' + ($code) + ' '; + if ($breakOnError) { + $closingBraces1 += '}'; + } + } + } + } + } + if ($breakOnError) { + out += ' ' + ($closingBraces1) + ' '; + $closingBraces1 = ''; + } + if ($rulesGroup.type) { + out += ' } '; + if ($typeSchema && $typeSchema === $rulesGroup.type && !$coerceToTypes) { + out += ' else { '; + var $schemaPath = it.schemaPath + '.type', + $errSchemaPath = it.errSchemaPath + '/type'; + var $$outStack = $$outStack || []; + $$outStack.push(out); + out = ''; /* istanbul ignore else */ + if (it.createErrors !== false) { + out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' } '; + if (it.opts.messages !== false) { + out += ' , message: \'should be '; + if ($typeIsArray) { + out += '' + ($typeSchema.join(",")); + } else { + out += '' + ($typeSchema); + } + out += '\' '; + } + if (it.opts.verbose) { + out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; + } + out += ' } '; + } else { + out += ' {} '; + } + var __err = out; + out = $$outStack.pop(); + if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ + if (it.async) { + out += ' throw new ValidationError([' + (__err) + ']); '; + } else { + out += ' validate.errors = [' + (__err) + ']; return false; '; + } + } else { + out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; + } + out += ' } '; + } + } + if ($breakOnError) { + out += ' if (errors === '; + if ($top) { + out += '0'; + } else { + out += 'errs_' + ($lvl); + } + out += ') { '; + $closingBraces2 += '}'; + } + } + } + } + } + if ($breakOnError) { + out += ' ' + ($closingBraces2) + ' '; + } + if ($top) { + if ($async) { + out += ' if (errors === 0) return data; '; + out += ' else throw new ValidationError(vErrors); '; + } else { + out += ' validate.errors = vErrors; '; + out += ' return errors === 0; '; + } + out += ' }); return validate;'; + } else { + out += ' var ' + ($valid) + ' = errors === errs_' + ($lvl) + ';'; + } + out = it.util.cleanUpCode(out); + if ($top) { + out = it.util.finalCleanUpCode(out, $async); + } + + function $shouldUseGroup($rulesGroup) { + var rules = $rulesGroup.rules; + for (var i = 0; i < rules.length; i++) + if ($shouldUseRule(rules[i])) return true; + } + + function $shouldUseRule($rule) { + return it.schema[$rule.keyword] !== undefined || ($rule.implements && $ruleImlementsSomeKeyword($rule)); + } + + function $ruleImlementsSomeKeyword($rule) { + var impl = $rule.implements; + for (var i = 0; i < impl.length; i++) + if (it.schema[impl[i]] !== undefined) return true; + } + return out; +} + +},{}],36:[function(require,module,exports){ +'use strict'; + +var IDENTIFIER = /^[a-z_$][a-z0-9_$-]*$/i; +var customRuleCode = require('./dotjs/custom'); + +module.exports = { + add: addKeyword, + get: getKeyword, + remove: removeKeyword +}; + +/** + * Define custom keyword + * @this Ajv + * @param {String} keyword custom keyword, should be unique (including different from all standard, custom and macro keywords). + * @param {Object} definition keyword definition object with properties `type` (type(s) which the keyword applies to), `validate` or `compile`. + */ +function addKeyword(keyword, definition) { + /* jshint validthis: true */ + /* eslint no-shadow: 0 */ + var RULES = this.RULES; + + if (RULES.keywords[keyword]) + throw new Error('Keyword ' + keyword + ' is already defined'); + + if (!IDENTIFIER.test(keyword)) + throw new Error('Keyword ' + keyword + ' is not a valid identifier'); + + if (definition) { + if (definition.macro && definition.valid !== undefined) + throw new Error('"valid" option cannot be used with macro keywords'); + + var dataType = definition.type; + if (Array.isArray(dataType)) { + var i, len = dataType.length; + for (i=0; i 2) res = slice.call(arguments, 1); + resolve(res); + }); + }); +} + +/** + * Convert an array of "yieldables" to a promise. + * Uses `Promise.all()` internally. + * + * @param {Array} obj + * @return {Promise} + * @api private + */ + +function arrayToPromise(obj) { + return Promise.all(obj.map(toPromise, this)); +} + +/** + * Convert an object of "yieldables" to a promise. + * Uses `Promise.all()` internally. + * + * @param {Object} obj + * @return {Promise} + * @api private + */ + +function objectToPromise(obj){ + var results = new obj.constructor(); + var keys = Object.keys(obj); + var promises = []; + for (var i = 0; i < keys.length; i++) { + var key = keys[i]; + var promise = toPromise.call(this, obj[key]); + if (promise && isPromise(promise)) defer(promise, key); + else results[key] = obj[key]; + } + return Promise.all(promises).then(function () { + return results; + }); + + function defer(promise, key) { + // predefine the key in the result + results[key] = undefined; + promises.push(promise.then(function (res) { + results[key] = res; + })); + } +} + +/** + * Check if `obj` is a promise. + * + * @param {Object} obj + * @return {Boolean} + * @api private + */ + +function isPromise(obj) { + return 'function' == typeof obj.then; +} + +/** + * Check if `obj` is a generator. + * + * @param {Mixed} obj + * @return {Boolean} + * @api private + */ + +function isGenerator(obj) { + return 'function' == typeof obj.next && 'function' == typeof obj.throw; +} + +/** + * Check if `obj` is a generator function. + * + * @param {Mixed} obj + * @return {Boolean} + * @api private + */ +function isGeneratorFunction(obj) { + var constructor = obj.constructor; + if (!constructor) return false; + if ('GeneratorFunction' === constructor.name || 'GeneratorFunction' === constructor.displayName) return true; + return isGenerator(constructor.prototype); +} + +/** + * Check for plain object. + * + * @param {Mixed} val + * @return {Boolean} + * @api private + */ + +function isObject(val) { + return Object == val.constructor; +} + +},{}],41:[function(require,module,exports){ +'use strict'; + +module.exports = function equal(a, b) { + if (a === b) return true; + + var arrA = Array.isArray(a) + , arrB = Array.isArray(b) + , i; + + if (arrA && arrB) { + if (a.length != b.length) return false; + for (i = 0; i < a.length; i++) + if (!equal(a[i], b[i])) return false; + return true; + } + + if (arrA != arrB) return false; + + if (a && b && typeof a === 'object' && typeof b === 'object') { + var keys = Object.keys(a); + if (keys.length !== Object.keys(b).length) return false; + + var dateA = a instanceof Date + , dateB = b instanceof Date; + if (dateA && dateB) return a.getTime() == b.getTime(); + if (dateA != dateB) return false; + + var regexpA = a instanceof RegExp + , regexpB = b instanceof RegExp; + if (regexpA && regexpB) return a.toString() == b.toString(); + if (regexpA != regexpB) return false; + + for (i = 0; i < keys.length; i++) + if (!Object.prototype.hasOwnProperty.call(b, keys[i])) return false; + + for (i = 0; i < keys.length; i++) + if(!equal(a[keys[i]], b[keys[i]])) return false; + + return true; + } + + return false; +}; + +},{}],42:[function(require,module,exports){ +'use strict'; + +module.exports = function (data, opts) { + if (!opts) opts = {}; + if (typeof opts === 'function') opts = { cmp: opts }; + var cycles = (typeof opts.cycles === 'boolean') ? opts.cycles : false; + + var cmp = opts.cmp && (function (f) { + return function (node) { + return function (a, b) { + var aobj = { key: a, value: node[a] }; + var bobj = { key: b, value: node[b] }; + return f(aobj, bobj); + }; + }; + })(opts.cmp); + + var seen = []; + return (function stringify (node) { + if (node && node.toJSON && typeof node.toJSON === 'function') { + node = node.toJSON(); + } + + if (node === undefined) return; + if (typeof node == 'number') return isFinite(node) ? '' + node : 'null'; + if (typeof node !== 'object') return JSON.stringify(node); + + var i, out; + if (Array.isArray(node)) { + out = '['; + for (i = 0; i < node.length; i++) { + if (i) out += ','; + out += stringify(node[i]) || 'null'; + } + return out + ']'; + } + + if (node === null) return 'null'; + + if (seen.indexOf(node) !== -1) { + if (cycles) return JSON.stringify('__cycle__'); + throw new TypeError('Converting circular structure to JSON'); + } + + var seenIndex = seen.push(node) - 1; + var keys = Object.keys(node).sort(cmp && cmp(node)); + out = ''; + for (i = 0; i < keys.length; i++) { + var key = keys[i]; + var value = stringify(node[key]); + + if (!value) continue; + if (out) out += ','; + out += JSON.stringify(key) + ':' + value; + } + seen.splice(seenIndex, 1); + return '{' + out + '}'; + })(data); +}; + +},{}],43:[function(require,module,exports){ +'use strict'; + +var traverse = module.exports = function (schema, opts, cb) { + if (typeof opts == 'function') { + cb = opts; + opts = {}; + } + _traverse(opts, cb, schema, '', schema); +}; + + +traverse.keywords = { + additionalItems: true, + items: true, + contains: true, + additionalProperties: true, + propertyNames: true, + not: true +}; + +traverse.arrayKeywords = { + items: true, + allOf: true, + anyOf: true, + oneOf: true +}; + +traverse.propsKeywords = { + definitions: true, + properties: true, + patternProperties: true, + dependencies: true +}; + +traverse.skipKeywords = { + enum: true, + const: true, + required: true, + maximum: true, + minimum: true, + exclusiveMaximum: true, + exclusiveMinimum: true, + multipleOf: true, + maxLength: true, + minLength: true, + pattern: true, + format: true, + maxItems: true, + minItems: true, + uniqueItems: true, + maxProperties: true, + minProperties: true +}; + + +function _traverse(opts, cb, schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex) { + if (schema && typeof schema == 'object' && !Array.isArray(schema)) { + cb(schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex); + for (var key in schema) { + var sch = schema[key]; + if (Array.isArray(sch)) { + if (key in traverse.arrayKeywords) { + for (var i=0; i= 0x80 (not a basic code point)', + 'invalid-input': 'Invalid input' + }, + + /** Convenience shortcuts */ + baseMinusTMin = base - tMin, + floor = Math.floor, + stringFromCharCode = String.fromCharCode, + + /** Temporary variable */ + key; + + /*--------------------------------------------------------------------------*/ + + /** + * A generic error utility function. + * @private + * @param {String} type The error type. + * @returns {Error} Throws a `RangeError` with the applicable error message. + */ + function error(type) { + throw new RangeError(errors[type]); + } + + /** + * A generic `Array#map` utility function. + * @private + * @param {Array} array The array to iterate over. + * @param {Function} callback The function that gets called for every array + * item. + * @returns {Array} A new array of values returned by the callback function. + */ + function map(array, fn) { + var length = array.length; + var result = []; + while (length--) { + result[length] = fn(array[length]); + } + return result; + } + + /** + * A simple `Array#map`-like wrapper to work with domain name strings or email + * addresses. + * @private + * @param {String} domain The domain name or email address. + * @param {Function} callback The function that gets called for every + * character. + * @returns {Array} A new string of characters returned by the callback + * function. + */ + function mapDomain(string, fn) { + var parts = string.split('@'); + var result = ''; + if (parts.length > 1) { + // In email addresses, only the domain name should be punycoded. Leave + // the local part (i.e. everything up to `@`) intact. + result = parts[0] + '@'; + string = parts[1]; + } + // Avoid `split(regex)` for IE8 compatibility. See #17. + string = string.replace(regexSeparators, '\x2E'); + var labels = string.split('.'); + var encoded = map(labels, fn).join('.'); + return result + encoded; + } + + /** + * Creates an array containing the numeric code points of each Unicode + * character in the string. While JavaScript uses UCS-2 internally, + * this function will convert a pair of surrogate halves (each of which + * UCS-2 exposes as separate characters) into a single code point, + * matching UTF-16. + * @see `punycode.ucs2.encode` + * @see + * @memberOf punycode.ucs2 + * @name decode + * @param {String} string The Unicode input string (UCS-2). + * @returns {Array} The new array of code points. + */ + function ucs2decode(string) { + var output = [], + counter = 0, + length = string.length, + value, + extra; + while (counter < length) { + value = string.charCodeAt(counter++); + if (value >= 0xD800 && value <= 0xDBFF && counter < length) { + // high surrogate, and there is a next character + extra = string.charCodeAt(counter++); + if ((extra & 0xFC00) == 0xDC00) { // low surrogate + output.push(((value & 0x3FF) << 10) + (extra & 0x3FF) + 0x10000); + } else { + // unmatched surrogate; only append this code unit, in case the next + // code unit is the high surrogate of a surrogate pair + output.push(value); + counter--; + } + } else { + output.push(value); + } + } + return output; + } + + /** + * Creates a string based on an array of numeric code points. + * @see `punycode.ucs2.decode` + * @memberOf punycode.ucs2 + * @name encode + * @param {Array} codePoints The array of numeric code points. + * @returns {String} The new Unicode string (UCS-2). + */ + function ucs2encode(array) { + return map(array, function(value) { + var output = ''; + if (value > 0xFFFF) { + value -= 0x10000; + output += stringFromCharCode(value >>> 10 & 0x3FF | 0xD800); + value = 0xDC00 | value & 0x3FF; + } + output += stringFromCharCode(value); + return output; + }).join(''); + } + + /** + * Converts a basic code point into a digit/integer. + * @see `digitToBasic()` + * @private + * @param {Number} codePoint The basic numeric code point value. + * @returns {Number} The numeric value of a basic code point (for use in + * representing integers) in the range `0` to `base - 1`, or `base` if + * the code point does not represent a value. + */ + function basicToDigit(codePoint) { + if (codePoint - 48 < 10) { + return codePoint - 22; + } + if (codePoint - 65 < 26) { + return codePoint - 65; + } + if (codePoint - 97 < 26) { + return codePoint - 97; + } + return base; + } + + /** + * Converts a digit/integer into a basic code point. + * @see `basicToDigit()` + * @private + * @param {Number} digit The numeric value of a basic code point. + * @returns {Number} The basic code point whose value (when used for + * representing integers) is `digit`, which needs to be in the range + * `0` to `base - 1`. If `flag` is non-zero, the uppercase form is + * used; else, the lowercase form is used. The behavior is undefined + * if `flag` is non-zero and `digit` has no uppercase form. + */ + function digitToBasic(digit, flag) { + // 0..25 map to ASCII a..z or A..Z + // 26..35 map to ASCII 0..9 + return digit + 22 + 75 * (digit < 26) - ((flag != 0) << 5); + } + + /** + * Bias adaptation function as per section 3.4 of RFC 3492. + * https://tools.ietf.org/html/rfc3492#section-3.4 + * @private + */ + function adapt(delta, numPoints, firstTime) { + var k = 0; + delta = firstTime ? floor(delta / damp) : delta >> 1; + delta += floor(delta / numPoints); + for (/* no initialization */; delta > baseMinusTMin * tMax >> 1; k += base) { + delta = floor(delta / baseMinusTMin); + } + return floor(k + (baseMinusTMin + 1) * delta / (delta + skew)); + } + + /** + * Converts a Punycode string of ASCII-only symbols to a string of Unicode + * symbols. + * @memberOf punycode + * @param {String} input The Punycode string of ASCII-only symbols. + * @returns {String} The resulting string of Unicode symbols. + */ + function decode(input) { + // Don't use UCS-2 + var output = [], + inputLength = input.length, + out, + i = 0, + n = initialN, + bias = initialBias, + basic, + j, + index, + oldi, + w, + k, + digit, + t, + /** Cached calculation results */ + baseMinusT; + + // Handle the basic code points: let `basic` be the number of input code + // points before the last delimiter, or `0` if there is none, then copy + // the first basic code points to the output. + + basic = input.lastIndexOf(delimiter); + if (basic < 0) { + basic = 0; + } + + for (j = 0; j < basic; ++j) { + // if it's not a basic code point + if (input.charCodeAt(j) >= 0x80) { + error('not-basic'); + } + output.push(input.charCodeAt(j)); + } + + // Main decoding loop: start just after the last delimiter if any basic code + // points were copied; start at the beginning otherwise. + + for (index = basic > 0 ? basic + 1 : 0; index < inputLength; /* no final expression */) { + + // `index` is the index of the next character to be consumed. + // Decode a generalized variable-length integer into `delta`, + // which gets added to `i`. The overflow checking is easier + // if we increase `i` as we go, then subtract off its starting + // value at the end to obtain `delta`. + for (oldi = i, w = 1, k = base; /* no condition */; k += base) { + + if (index >= inputLength) { + error('invalid-input'); + } + + digit = basicToDigit(input.charCodeAt(index++)); + + if (digit >= base || digit > floor((maxInt - i) / w)) { + error('overflow'); + } + + i += digit * w; + t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); + + if (digit < t) { + break; + } + + baseMinusT = base - t; + if (w > floor(maxInt / baseMinusT)) { + error('overflow'); + } + + w *= baseMinusT; + + } + + out = output.length + 1; + bias = adapt(i - oldi, out, oldi == 0); + + // `i` was supposed to wrap around from `out` to `0`, + // incrementing `n` each time, so we'll fix that now: + if (floor(i / out) > maxInt - n) { + error('overflow'); + } + + n += floor(i / out); + i %= out; + + // Insert `n` at position `i` of the output + output.splice(i++, 0, n); + + } + + return ucs2encode(output); + } + + /** + * Converts a string of Unicode symbols (e.g. a domain name label) to a + * Punycode string of ASCII-only symbols. + * @memberOf punycode + * @param {String} input The string of Unicode symbols. + * @returns {String} The resulting Punycode string of ASCII-only symbols. + */ + function encode(input) { + var n, + delta, + handledCPCount, + basicLength, + bias, + j, + m, + q, + k, + t, + currentValue, + output = [], + /** `inputLength` will hold the number of code points in `input`. */ + inputLength, + /** Cached calculation results */ + handledCPCountPlusOne, + baseMinusT, + qMinusT; + + // Convert the input in UCS-2 to Unicode + input = ucs2decode(input); + + // Cache the length + inputLength = input.length; + + // Initialize the state + n = initialN; + delta = 0; + bias = initialBias; + + // Handle the basic code points + for (j = 0; j < inputLength; ++j) { + currentValue = input[j]; + if (currentValue < 0x80) { + output.push(stringFromCharCode(currentValue)); + } + } + + handledCPCount = basicLength = output.length; + + // `handledCPCount` is the number of code points that have been handled; + // `basicLength` is the number of basic code points. + + // Finish the basic string - if it is not empty - with a delimiter + if (basicLength) { + output.push(delimiter); + } + + // Main encoding loop: + while (handledCPCount < inputLength) { + + // All non-basic code points < n have been handled already. Find the next + // larger one: + for (m = maxInt, j = 0; j < inputLength; ++j) { + currentValue = input[j]; + if (currentValue >= n && currentValue < m) { + m = currentValue; + } + } + + // Increase `delta` enough to advance the decoder's state to , + // but guard against overflow + handledCPCountPlusOne = handledCPCount + 1; + if (m - n > floor((maxInt - delta) / handledCPCountPlusOne)) { + error('overflow'); + } + + delta += (m - n) * handledCPCountPlusOne; + n = m; + + for (j = 0; j < inputLength; ++j) { + currentValue = input[j]; + + if (currentValue < n && ++delta > maxInt) { + error('overflow'); + } + + if (currentValue == n) { + // Represent delta as a generalized variable-length integer + for (q = delta, k = base; /* no condition */; k += base) { + t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); + if (q < t) { + break; + } + qMinusT = q - t; + baseMinusT = base - t; + output.push( + stringFromCharCode(digitToBasic(t + qMinusT % baseMinusT, 0)) + ); + q = floor(qMinusT / baseMinusT); + } + + output.push(stringFromCharCode(digitToBasic(q, 0))); + bias = adapt(delta, handledCPCountPlusOne, handledCPCount == basicLength); + delta = 0; + ++handledCPCount; + } + } + + ++delta; + ++n; + + } + return output.join(''); + } + + /** + * Converts a Punycode string representing a domain name or an email address + * to Unicode. Only the Punycoded parts of the input will be converted, i.e. + * it doesn't matter if you call it on a string that has already been + * converted to Unicode. + * @memberOf punycode + * @param {String} input The Punycoded domain name or email address to + * convert to Unicode. + * @returns {String} The Unicode representation of the given Punycode + * string. + */ + function toUnicode(input) { + return mapDomain(input, function(string) { + return regexPunycode.test(string) + ? decode(string.slice(4).toLowerCase()) + : string; + }); + } + + /** + * Converts a Unicode string representing a domain name or an email address to + * Punycode. Only the non-ASCII parts of the domain name will be converted, + * i.e. it doesn't matter if you call it with a domain that's already in + * ASCII. + * @memberOf punycode + * @param {String} input The domain name or email address to convert, as a + * Unicode string. + * @returns {String} The Punycode representation of the given domain name or + * email address. + */ + function toASCII(input) { + return mapDomain(input, function(string) { + return regexNonASCII.test(string) + ? 'xn--' + encode(string) + : string; + }); + } + + /*--------------------------------------------------------------------------*/ + + /** Define the public API */ + punycode = { + /** + * A string representing the current Punycode.js version number. + * @memberOf punycode + * @type String + */ + 'version': '1.4.1', + /** + * An object of methods to convert from JavaScript's internal character + * representation (UCS-2) to Unicode code points, and back. + * @see + * @memberOf punycode + * @type Object + */ + 'ucs2': { + 'decode': ucs2decode, + 'encode': ucs2encode + }, + 'decode': decode, + 'encode': encode, + 'toASCII': toASCII, + 'toUnicode': toUnicode + }; + + /** Expose `punycode` */ + // Some AMD build optimizers, like r.js, check for specific condition patterns + // like the following: + if ( + typeof define == 'function' && + typeof define.amd == 'object' && + define.amd + ) { + define('punycode', function() { + return punycode; + }); + } else if (freeExports && freeModule) { + if (module.exports == freeExports) { + // in Node.js, io.js, or RingoJS v0.8.0+ + freeModule.exports = punycode; + } else { + // in Narwhal or RingoJS v0.7.0- + for (key in punycode) { + punycode.hasOwnProperty(key) && (freeExports[key] = punycode[key]); + } + } + } else { + // in Rhino or a web browser + root.punycode = punycode; + } + +}(this)); + +}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) +},{}],45:[function(require,module,exports){ +// Copyright Joyent, Inc. and other Node contributors. +// +// Permission is hereby granted, free of charge, to any person obtaining a +// copy of this software and associated documentation files (the +// "Software"), to deal in the Software without restriction, including +// without limitation the rights to use, copy, modify, merge, publish, +// distribute, sublicense, and/or sell copies of the Software, and to permit +// persons to whom the Software is furnished to do so, subject to the +// following conditions: +// +// The above copyright notice and this permission notice shall be included +// in all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN +// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR +// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE +// USE OR OTHER DEALINGS IN THE SOFTWARE. + +'use strict'; + +// If obj.hasOwnProperty has been overridden, then calling +// obj.hasOwnProperty(prop) will break. +// See: https://github.com/joyent/node/issues/1707 +function hasOwnProperty(obj, prop) { + return Object.prototype.hasOwnProperty.call(obj, prop); +} + +module.exports = function(qs, sep, eq, options) { + sep = sep || '&'; + eq = eq || '='; + var obj = {}; + + if (typeof qs !== 'string' || qs.length === 0) { + return obj; + } + + var regexp = /\+/g; + qs = qs.split(sep); + + var maxKeys = 1000; + if (options && typeof options.maxKeys === 'number') { + maxKeys = options.maxKeys; + } + + var len = qs.length; + // maxKeys <= 0 means that we should not limit keys count + if (maxKeys > 0 && len > maxKeys) { + len = maxKeys; + } + + for (var i = 0; i < len; ++i) { + var x = qs[i].replace(regexp, '%20'), + idx = x.indexOf(eq), + kstr, vstr, k, v; + + if (idx >= 0) { + kstr = x.substr(0, idx); + vstr = x.substr(idx + 1); + } else { + kstr = x; + vstr = ''; + } + + k = decodeURIComponent(kstr); + v = decodeURIComponent(vstr); + + if (!hasOwnProperty(obj, k)) { + obj[k] = v; + } else if (isArray(obj[k])) { + obj[k].push(v); + } else { + obj[k] = [obj[k], v]; + } + } + + return obj; +}; + +var isArray = Array.isArray || function (xs) { + return Object.prototype.toString.call(xs) === '[object Array]'; +}; + +},{}],46:[function(require,module,exports){ +// Copyright Joyent, Inc. and other Node contributors. +// +// Permission is hereby granted, free of charge, to any person obtaining a +// copy of this software and associated documentation files (the +// "Software"), to deal in the Software without restriction, including +// without limitation the rights to use, copy, modify, merge, publish, +// distribute, sublicense, and/or sell copies of the Software, and to permit +// persons to whom the Software is furnished to do so, subject to the +// following conditions: +// +// The above copyright notice and this permission notice shall be included +// in all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN +// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR +// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE +// USE OR OTHER DEALINGS IN THE SOFTWARE. + +'use strict'; + +var stringifyPrimitive = function(v) { + switch (typeof v) { + case 'string': + return v; + + case 'boolean': + return v ? 'true' : 'false'; + + case 'number': + return isFinite(v) ? v : ''; + + default: + return ''; + } +}; + +module.exports = function(obj, sep, eq, name) { + sep = sep || '&'; + eq = eq || '='; + if (obj === null) { + obj = undefined; + } + + if (typeof obj === 'object') { + return map(objectKeys(obj), function(k) { + var ks = encodeURIComponent(stringifyPrimitive(k)) + eq; + if (isArray(obj[k])) { + return map(obj[k], function(v) { + return ks + encodeURIComponent(stringifyPrimitive(v)); + }).join(sep); + } else { + return ks + encodeURIComponent(stringifyPrimitive(obj[k])); + } + }).join(sep); + + } + + if (!name) return ''; + return encodeURIComponent(stringifyPrimitive(name)) + eq + + encodeURIComponent(stringifyPrimitive(obj)); +}; + +var isArray = Array.isArray || function (xs) { + return Object.prototype.toString.call(xs) === '[object Array]'; +}; + +function map (xs, f) { + if (xs.map) return xs.map(f); + var res = []; + for (var i = 0; i < xs.length; i++) { + res.push(f(xs[i], i)); + } + return res; +} + +var objectKeys = Object.keys || function (obj) { + var res = []; + for (var key in obj) { + if (Object.prototype.hasOwnProperty.call(obj, key)) res.push(key); + } + return res; +}; + +},{}],47:[function(require,module,exports){ +'use strict'; + +exports.decode = exports.parse = require('./decode'); +exports.encode = exports.stringify = require('./encode'); + +},{"./decode":45,"./encode":46}],48:[function(require,module,exports){ +// Copyright Joyent, Inc. and other Node contributors. +// +// Permission is hereby granted, free of charge, to any person obtaining a +// copy of this software and associated documentation files (the +// "Software"), to deal in the Software without restriction, including +// without limitation the rights to use, copy, modify, merge, publish, +// distribute, sublicense, and/or sell copies of the Software, and to permit +// persons to whom the Software is furnished to do so, subject to the +// following conditions: +// +// The above copyright notice and this permission notice shall be included +// in all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN +// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR +// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE +// USE OR OTHER DEALINGS IN THE SOFTWARE. + +'use strict'; + +var punycode = require('punycode'); +var util = require('./util'); + +exports.parse = urlParse; +exports.resolve = urlResolve; +exports.resolveObject = urlResolveObject; +exports.format = urlFormat; + +exports.Url = Url; + +function Url() { + this.protocol = null; + this.slashes = null; + this.auth = null; + this.host = null; + this.port = null; + this.hostname = null; + this.hash = null; + this.search = null; + this.query = null; + this.pathname = null; + this.path = null; + this.href = null; +} + +// Reference: RFC 3986, RFC 1808, RFC 2396 + +// define these here so at least they only have to be +// compiled once on the first module load. +var protocolPattern = /^([a-z0-9.+-]+:)/i, + portPattern = /:[0-9]*$/, + + // Special case for a simple path URL + simplePathPattern = /^(\/\/?(?!\/)[^\?\s]*)(\?[^\s]*)?$/, + + // RFC 2396: characters reserved for delimiting URLs. + // We actually just auto-escape these. + delims = ['<', '>', '"', '`', ' ', '\r', '\n', '\t'], + + // RFC 2396: characters not allowed for various reasons. + unwise = ['{', '}', '|', '\\', '^', '`'].concat(delims), + + // Allowed by RFCs, but cause of XSS attacks. Always escape these. + autoEscape = ['\''].concat(unwise), + // Characters that are never ever allowed in a hostname. + // Note that any invalid chars are also handled, but these + // are the ones that are *expected* to be seen, so we fast-path + // them. + nonHostChars = ['%', '/', '?', ';', '#'].concat(autoEscape), + hostEndingChars = ['/', '?', '#'], + hostnameMaxLen = 255, + hostnamePartPattern = /^[+a-z0-9A-Z_-]{0,63}$/, + hostnamePartStart = /^([+a-z0-9A-Z_-]{0,63})(.*)$/, + // protocols that can allow "unsafe" and "unwise" chars. + unsafeProtocol = { + 'javascript': true, + 'javascript:': true + }, + // protocols that never have a hostname. + hostlessProtocol = { + 'javascript': true, + 'javascript:': true + }, + // protocols that always contain a // bit. + slashedProtocol = { + 'http': true, + 'https': true, + 'ftp': true, + 'gopher': true, + 'file': true, + 'http:': true, + 'https:': true, + 'ftp:': true, + 'gopher:': true, + 'file:': true + }, + querystring = require('querystring'); + +function urlParse(url, parseQueryString, slashesDenoteHost) { + if (url && util.isObject(url) && url instanceof Url) return url; + + var u = new Url; + u.parse(url, parseQueryString, slashesDenoteHost); + return u; +} + +Url.prototype.parse = function(url, parseQueryString, slashesDenoteHost) { + if (!util.isString(url)) { + throw new TypeError("Parameter 'url' must be a string, not " + typeof url); + } + + // Copy chrome, IE, opera backslash-handling behavior. + // Back slashes before the query string get converted to forward slashes + // See: https://code.google.com/p/chromium/issues/detail?id=25916 + var queryIndex = url.indexOf('?'), + splitter = + (queryIndex !== -1 && queryIndex < url.indexOf('#')) ? '?' : '#', + uSplit = url.split(splitter), + slashRegex = /\\/g; + uSplit[0] = uSplit[0].replace(slashRegex, '/'); + url = uSplit.join(splitter); + + var rest = url; + + // trim before proceeding. + // This is to support parse stuff like " http://foo.com \n" + rest = rest.trim(); + + if (!slashesDenoteHost && url.split('#').length === 1) { + // Try fast path regexp + var simplePath = simplePathPattern.exec(rest); + if (simplePath) { + this.path = rest; + this.href = rest; + this.pathname = simplePath[1]; + if (simplePath[2]) { + this.search = simplePath[2]; + if (parseQueryString) { + this.query = querystring.parse(this.search.substr(1)); + } else { + this.query = this.search.substr(1); + } + } else if (parseQueryString) { + this.search = ''; + this.query = {}; + } + return this; + } + } + + var proto = protocolPattern.exec(rest); + if (proto) { + proto = proto[0]; + var lowerProto = proto.toLowerCase(); + this.protocol = lowerProto; + rest = rest.substr(proto.length); + } + + // figure out if it's got a host + // user@server is *always* interpreted as a hostname, and url + // resolution will treat //foo/bar as host=foo,path=bar because that's + // how the browser resolves relative URLs. + if (slashesDenoteHost || proto || rest.match(/^\/\/[^@\/]+@[^@\/]+/)) { + var slashes = rest.substr(0, 2) === '//'; + if (slashes && !(proto && hostlessProtocol[proto])) { + rest = rest.substr(2); + this.slashes = true; + } + } + + if (!hostlessProtocol[proto] && + (slashes || (proto && !slashedProtocol[proto]))) { + + // there's a hostname. + // the first instance of /, ?, ;, or # ends the host. + // + // If there is an @ in the hostname, then non-host chars *are* allowed + // to the left of the last @ sign, unless some host-ending character + // comes *before* the @-sign. + // URLs are obnoxious. + // + // ex: + // http://a@b@c/ => user:a@b host:c + // http://a@b?@c => user:a host:c path:/?@c + + // v0.12 TODO(isaacs): This is not quite how Chrome does things. + // Review our test case against browsers more comprehensively. + + // find the first instance of any hostEndingChars + var hostEnd = -1; + for (var i = 0; i < hostEndingChars.length; i++) { + var hec = rest.indexOf(hostEndingChars[i]); + if (hec !== -1 && (hostEnd === -1 || hec < hostEnd)) + hostEnd = hec; + } + + // at this point, either we have an explicit point where the + // auth portion cannot go past, or the last @ char is the decider. + var auth, atSign; + if (hostEnd === -1) { + // atSign can be anywhere. + atSign = rest.lastIndexOf('@'); + } else { + // atSign must be in auth portion. + // http://a@b/c@d => host:b auth:a path:/c@d + atSign = rest.lastIndexOf('@', hostEnd); + } + + // Now we have a portion which is definitely the auth. + // Pull that off. + if (atSign !== -1) { + auth = rest.slice(0, atSign); + rest = rest.slice(atSign + 1); + this.auth = decodeURIComponent(auth); + } + + // the host is the remaining to the left of the first non-host char + hostEnd = -1; + for (var i = 0; i < nonHostChars.length; i++) { + var hec = rest.indexOf(nonHostChars[i]); + if (hec !== -1 && (hostEnd === -1 || hec < hostEnd)) + hostEnd = hec; + } + // if we still have not hit it, then the entire thing is a host. + if (hostEnd === -1) + hostEnd = rest.length; + + this.host = rest.slice(0, hostEnd); + rest = rest.slice(hostEnd); + + // pull out port. + this.parseHost(); + + // we've indicated that there is a hostname, + // so even if it's empty, it has to be present. + this.hostname = this.hostname || ''; + + // if hostname begins with [ and ends with ] + // assume that it's an IPv6 address. + var ipv6Hostname = this.hostname[0] === '[' && + this.hostname[this.hostname.length - 1] === ']'; + + // validate a little. + if (!ipv6Hostname) { + var hostparts = this.hostname.split(/\./); + for (var i = 0, l = hostparts.length; i < l; i++) { + var part = hostparts[i]; + if (!part) continue; + if (!part.match(hostnamePartPattern)) { + var newpart = ''; + for (var j = 0, k = part.length; j < k; j++) { + if (part.charCodeAt(j) > 127) { + // we replace non-ASCII char with a temporary placeholder + // we need this to make sure size of hostname is not + // broken by replacing non-ASCII by nothing + newpart += 'x'; + } else { + newpart += part[j]; + } + } + // we test again with ASCII char only + if (!newpart.match(hostnamePartPattern)) { + var validParts = hostparts.slice(0, i); + var notHost = hostparts.slice(i + 1); + var bit = part.match(hostnamePartStart); + if (bit) { + validParts.push(bit[1]); + notHost.unshift(bit[2]); + } + if (notHost.length) { + rest = '/' + notHost.join('.') + rest; + } + this.hostname = validParts.join('.'); + break; + } + } + } + } + + if (this.hostname.length > hostnameMaxLen) { + this.hostname = ''; + } else { + // hostnames are always lower case. + this.hostname = this.hostname.toLowerCase(); + } + + if (!ipv6Hostname) { + // IDNA Support: Returns a punycoded representation of "domain". + // It only converts parts of the domain name that + // have non-ASCII characters, i.e. it doesn't matter if + // you call it with a domain that already is ASCII-only. + this.hostname = punycode.toASCII(this.hostname); + } + + var p = this.port ? ':' + this.port : ''; + var h = this.hostname || ''; + this.host = h + p; + this.href += this.host; + + // strip [ and ] from the hostname + // the host field still retains them, though + if (ipv6Hostname) { + this.hostname = this.hostname.substr(1, this.hostname.length - 2); + if (rest[0] !== '/') { + rest = '/' + rest; + } + } + } + + // now rest is set to the post-host stuff. + // chop off any delim chars. + if (!unsafeProtocol[lowerProto]) { + + // First, make 100% sure that any "autoEscape" chars get + // escaped, even if encodeURIComponent doesn't think they + // need to be. + for (var i = 0, l = autoEscape.length; i < l; i++) { + var ae = autoEscape[i]; + if (rest.indexOf(ae) === -1) + continue; + var esc = encodeURIComponent(ae); + if (esc === ae) { + esc = escape(ae); + } + rest = rest.split(ae).join(esc); + } + } + + + // chop off from the tail first. + var hash = rest.indexOf('#'); + if (hash !== -1) { + // got a fragment string. + this.hash = rest.substr(hash); + rest = rest.slice(0, hash); + } + var qm = rest.indexOf('?'); + if (qm !== -1) { + this.search = rest.substr(qm); + this.query = rest.substr(qm + 1); + if (parseQueryString) { + this.query = querystring.parse(this.query); + } + rest = rest.slice(0, qm); + } else if (parseQueryString) { + // no query string, but parseQueryString still requested + this.search = ''; + this.query = {}; + } + if (rest) this.pathname = rest; + if (slashedProtocol[lowerProto] && + this.hostname && !this.pathname) { + this.pathname = '/'; + } + + //to support http.request + if (this.pathname || this.search) { + var p = this.pathname || ''; + var s = this.search || ''; + this.path = p + s; + } + + // finally, reconstruct the href based on what has been validated. + this.href = this.format(); + return this; +}; + +// format a parsed object into a url string +function urlFormat(obj) { + // ensure it's an object, and not a string url. + // If it's an obj, this is a no-op. + // this way, you can call url_format() on strings + // to clean up potentially wonky urls. + if (util.isString(obj)) obj = urlParse(obj); + if (!(obj instanceof Url)) return Url.prototype.format.call(obj); + return obj.format(); +} + +Url.prototype.format = function() { + var auth = this.auth || ''; + if (auth) { + auth = encodeURIComponent(auth); + auth = auth.replace(/%3A/i, ':'); + auth += '@'; + } + + var protocol = this.protocol || '', + pathname = this.pathname || '', + hash = this.hash || '', + host = false, + query = ''; + + if (this.host) { + host = auth + this.host; + } else if (this.hostname) { + host = auth + (this.hostname.indexOf(':') === -1 ? + this.hostname : + '[' + this.hostname + ']'); + if (this.port) { + host += ':' + this.port; + } + } + + if (this.query && + util.isObject(this.query) && + Object.keys(this.query).length) { + query = querystring.stringify(this.query); + } + + var search = this.search || (query && ('?' + query)) || ''; + + if (protocol && protocol.substr(-1) !== ':') protocol += ':'; + + // only the slashedProtocols get the //. Not mailto:, xmpp:, etc. + // unless they had them to begin with. + if (this.slashes || + (!protocol || slashedProtocol[protocol]) && host !== false) { + host = '//' + (host || ''); + if (pathname && pathname.charAt(0) !== '/') pathname = '/' + pathname; + } else if (!host) { + host = ''; + } + + if (hash && hash.charAt(0) !== '#') hash = '#' + hash; + if (search && search.charAt(0) !== '?') search = '?' + search; + + pathname = pathname.replace(/[?#]/g, function(match) { + return encodeURIComponent(match); + }); + search = search.replace('#', '%23'); + + return protocol + host + pathname + search + hash; +}; + +function urlResolve(source, relative) { + return urlParse(source, false, true).resolve(relative); +} + +Url.prototype.resolve = function(relative) { + return this.resolveObject(urlParse(relative, false, true)).format(); +}; + +function urlResolveObject(source, relative) { + if (!source) return relative; + return urlParse(source, false, true).resolveObject(relative); +} + +Url.prototype.resolveObject = function(relative) { + if (util.isString(relative)) { + var rel = new Url(); + rel.parse(relative, false, true); + relative = rel; + } + + var result = new Url(); + var tkeys = Object.keys(this); + for (var tk = 0; tk < tkeys.length; tk++) { + var tkey = tkeys[tk]; + result[tkey] = this[tkey]; + } + + // hash is always overridden, no matter what. + // even href="" will remove it. + result.hash = relative.hash; + + // if the relative url is empty, then there's nothing left to do here. + if (relative.href === '') { + result.href = result.format(); + return result; + } + + // hrefs like //foo/bar always cut to the protocol. + if (relative.slashes && !relative.protocol) { + // take everything except the protocol from relative + var rkeys = Object.keys(relative); + for (var rk = 0; rk < rkeys.length; rk++) { + var rkey = rkeys[rk]; + if (rkey !== 'protocol') + result[rkey] = relative[rkey]; + } + + //urlParse appends trailing / to urls like http://www.example.com + if (slashedProtocol[result.protocol] && + result.hostname && !result.pathname) { + result.path = result.pathname = '/'; + } + + result.href = result.format(); + return result; + } + + if (relative.protocol && relative.protocol !== result.protocol) { + // if it's a known url protocol, then changing + // the protocol does weird things + // first, if it's not file:, then we MUST have a host, + // and if there was a path + // to begin with, then we MUST have a path. + // if it is file:, then the host is dropped, + // because that's known to be hostless. + // anything else is assumed to be absolute. + if (!slashedProtocol[relative.protocol]) { + var keys = Object.keys(relative); + for (var v = 0; v < keys.length; v++) { + var k = keys[v]; + result[k] = relative[k]; + } + result.href = result.format(); + return result; + } + + result.protocol = relative.protocol; + if (!relative.host && !hostlessProtocol[relative.protocol]) { + var relPath = (relative.pathname || '').split('/'); + while (relPath.length && !(relative.host = relPath.shift())); + if (!relative.host) relative.host = ''; + if (!relative.hostname) relative.hostname = ''; + if (relPath[0] !== '') relPath.unshift(''); + if (relPath.length < 2) relPath.unshift(''); + result.pathname = relPath.join('/'); + } else { + result.pathname = relative.pathname; + } + result.search = relative.search; + result.query = relative.query; + result.host = relative.host || ''; + result.auth = relative.auth; + result.hostname = relative.hostname || relative.host; + result.port = relative.port; + // to support http.request + if (result.pathname || result.search) { + var p = result.pathname || ''; + var s = result.search || ''; + result.path = p + s; + } + result.slashes = result.slashes || relative.slashes; + result.href = result.format(); + return result; + } + + var isSourceAbs = (result.pathname && result.pathname.charAt(0) === '/'), + isRelAbs = ( + relative.host || + relative.pathname && relative.pathname.charAt(0) === '/' + ), + mustEndAbs = (isRelAbs || isSourceAbs || + (result.host && relative.pathname)), + removeAllDots = mustEndAbs, + srcPath = result.pathname && result.pathname.split('/') || [], + relPath = relative.pathname && relative.pathname.split('/') || [], + psychotic = result.protocol && !slashedProtocol[result.protocol]; + + // if the url is a non-slashed url, then relative + // links like ../.. should be able + // to crawl up to the hostname, as well. This is strange. + // result.protocol has already been set by now. + // Later on, put the first path part into the host field. + if (psychotic) { + result.hostname = ''; + result.port = null; + if (result.host) { + if (srcPath[0] === '') srcPath[0] = result.host; + else srcPath.unshift(result.host); + } + result.host = ''; + if (relative.protocol) { + relative.hostname = null; + relative.port = null; + if (relative.host) { + if (relPath[0] === '') relPath[0] = relative.host; + else relPath.unshift(relative.host); + } + relative.host = null; + } + mustEndAbs = mustEndAbs && (relPath[0] === '' || srcPath[0] === ''); + } + + if (isRelAbs) { + // it's absolute. + result.host = (relative.host || relative.host === '') ? + relative.host : result.host; + result.hostname = (relative.hostname || relative.hostname === '') ? + relative.hostname : result.hostname; + result.search = relative.search; + result.query = relative.query; + srcPath = relPath; + // fall through to the dot-handling below. + } else if (relPath.length) { + // it's relative + // throw away the existing file, and take the new path instead. + if (!srcPath) srcPath = []; + srcPath.pop(); + srcPath = srcPath.concat(relPath); + result.search = relative.search; + result.query = relative.query; + } else if (!util.isNullOrUndefined(relative.search)) { + // just pull out the search. + // like href='?foo'. + // Put this after the other two cases because it simplifies the booleans + if (psychotic) { + result.hostname = result.host = srcPath.shift(); + //occationaly the auth can get stuck only in host + //this especially happens in cases like + //url.resolveObject('mailto:local1@domain1', 'local2@domain2') + var authInHost = result.host && result.host.indexOf('@') > 0 ? + result.host.split('@') : false; + if (authInHost) { + result.auth = authInHost.shift(); + result.host = result.hostname = authInHost.shift(); + } + } + result.search = relative.search; + result.query = relative.query; + //to support http.request + if (!util.isNull(result.pathname) || !util.isNull(result.search)) { + result.path = (result.pathname ? result.pathname : '') + + (result.search ? result.search : ''); + } + result.href = result.format(); + return result; + } + + if (!srcPath.length) { + // no path at all. easy. + // we've already handled the other stuff above. + result.pathname = null; + //to support http.request + if (result.search) { + result.path = '/' + result.search; + } else { + result.path = null; + } + result.href = result.format(); + return result; + } + + // if a url ENDs in . or .., then it must get a trailing slash. + // however, if it ends in anything else non-slashy, + // then it must NOT get a trailing slash. + var last = srcPath.slice(-1)[0]; + var hasTrailingSlash = ( + (result.host || relative.host || srcPath.length > 1) && + (last === '.' || last === '..') || last === ''); + + // strip single dots, resolve double dots to parent dir + // if the path tries to go above the root, `up` ends up > 0 + var up = 0; + for (var i = srcPath.length; i >= 0; i--) { + last = srcPath[i]; + if (last === '.') { + srcPath.splice(i, 1); + } else if (last === '..') { + srcPath.splice(i, 1); + up++; + } else if (up) { + srcPath.splice(i, 1); + up--; + } + } + + // if the path is allowed to go above the root, restore leading ..s + if (!mustEndAbs && !removeAllDots) { + for (; up--; up) { + srcPath.unshift('..'); + } + } + + if (mustEndAbs && srcPath[0] !== '' && + (!srcPath[0] || srcPath[0].charAt(0) !== '/')) { + srcPath.unshift(''); + } + + if (hasTrailingSlash && (srcPath.join('/').substr(-1) !== '/')) { + srcPath.push(''); + } + + var isAbsolute = srcPath[0] === '' || + (srcPath[0] && srcPath[0].charAt(0) === '/'); + + // put the host back + if (psychotic) { + result.hostname = result.host = isAbsolute ? '' : + srcPath.length ? srcPath.shift() : ''; + //occationaly the auth can get stuck only in host + //this especially happens in cases like + //url.resolveObject('mailto:local1@domain1', 'local2@domain2') + var authInHost = result.host && result.host.indexOf('@') > 0 ? + result.host.split('@') : false; + if (authInHost) { + result.auth = authInHost.shift(); + result.host = result.hostname = authInHost.shift(); + } + } + + mustEndAbs = mustEndAbs || (result.host && srcPath.length); + + if (mustEndAbs && !isAbsolute) { + srcPath.unshift(''); + } + + if (!srcPath.length) { + result.pathname = null; + result.path = null; + } else { + result.pathname = srcPath.join('/'); + } + + //to support request.http + if (!util.isNull(result.pathname) || !util.isNull(result.search)) { + result.path = (result.pathname ? result.pathname : '') + + (result.search ? result.search : ''); + } + result.auth = relative.auth || result.auth; + result.slashes = result.slashes || relative.slashes; + result.href = result.format(); + return result; +}; + +Url.prototype.parseHost = function() { + var host = this.host; + var port = portPattern.exec(host); + if (port) { + port = port[0]; + if (port !== ':') { + this.port = port.substr(1); + } + host = host.substr(0, host.length - port.length); + } + if (host) this.hostname = host; +}; + +},{"./util":49,"punycode":44,"querystring":47}],49:[function(require,module,exports){ +'use strict'; + +module.exports = { + isString: function(arg) { + return typeof(arg) === 'string'; + }, + isObject: function(arg) { + return typeof(arg) === 'object' && arg !== null; + }, + isNull: function(arg) { + return arg === null; + }, + isNullOrUndefined: function(arg) { + return arg == null; + } +}; + +},{}],"ajv":[function(require,module,exports){ +'use strict'; + +var compileSchema = require('./compile') + , resolve = require('./compile/resolve') + , Cache = require('./cache') + , SchemaObject = require('./compile/schema_obj') + , stableStringify = require('fast-json-stable-stringify') + , formats = require('./compile/formats') + , rules = require('./compile/rules') + , $dataMetaSchema = require('./$data') + , patternGroups = require('./patternGroups') + , util = require('./compile/util') + , co = require('co'); + +module.exports = Ajv; + +Ajv.prototype.validate = validate; +Ajv.prototype.compile = compile; +Ajv.prototype.addSchema = addSchema; +Ajv.prototype.addMetaSchema = addMetaSchema; +Ajv.prototype.validateSchema = validateSchema; +Ajv.prototype.getSchema = getSchema; +Ajv.prototype.removeSchema = removeSchema; +Ajv.prototype.addFormat = addFormat; +Ajv.prototype.errorsText = errorsText; + +Ajv.prototype._addSchema = _addSchema; +Ajv.prototype._compile = _compile; + +Ajv.prototype.compileAsync = require('./compile/async'); +var customKeyword = require('./keyword'); +Ajv.prototype.addKeyword = customKeyword.add; +Ajv.prototype.getKeyword = customKeyword.get; +Ajv.prototype.removeKeyword = customKeyword.remove; + +var errorClasses = require('./compile/error_classes'); +Ajv.ValidationError = errorClasses.Validation; +Ajv.MissingRefError = errorClasses.MissingRef; +Ajv.$dataMetaSchema = $dataMetaSchema; + +var META_SCHEMA_ID = 'http://json-schema.org/draft-06/schema'; + +var META_IGNORE_OPTIONS = [ 'removeAdditional', 'useDefaults', 'coerceTypes' ]; +var META_SUPPORT_DATA = ['/properties']; + +/** + * Creates validator instance. + * Usage: `Ajv(opts)` + * @param {Object} opts optional options + * @return {Object} ajv instance + */ +function Ajv(opts) { + if (!(this instanceof Ajv)) return new Ajv(opts); + opts = this._opts = util.copy(opts) || {}; + this._schemas = {}; + this._refs = {}; + this._fragments = {}; + this._formats = formats(opts.format); + var schemaUriFormat = this._schemaUriFormat = this._formats['uri-reference']; + this._schemaUriFormatFunc = function (str) { return schemaUriFormat.test(str); }; + + this._cache = opts.cache || new Cache; + this._loadingSchemas = {}; + this._compilations = []; + this.RULES = rules(); + this._getId = chooseGetId(opts); + + opts.loopRequired = opts.loopRequired || Infinity; + if (opts.errorDataPath == 'property') opts._errorDataPathProperty = true; + if (opts.serialize === undefined) opts.serialize = stableStringify; + this._metaOpts = getMetaSchemaOptions(this); + + if (opts.formats) addInitialFormats(this); + addDraft6MetaSchema(this); + if (typeof opts.meta == 'object') this.addMetaSchema(opts.meta); + addInitialSchemas(this); + if (opts.patternGroups) patternGroups(this); +} + + + +/** + * Validate data using schema + * Schema will be compiled and cached (using serialized JSON as key. [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) is used to serialize. + * @this Ajv + * @param {String|Object} schemaKeyRef key, ref or schema object + * @param {Any} data to be validated + * @return {Boolean} validation result. Errors from the last validation will be available in `ajv.errors` (and also in compiled schema: `schema.errors`). + */ +function validate(schemaKeyRef, data) { + var v; + if (typeof schemaKeyRef == 'string') { + v = this.getSchema(schemaKeyRef); + if (!v) throw new Error('no schema with key or ref "' + schemaKeyRef + '"'); + } else { + var schemaObj = this._addSchema(schemaKeyRef); + v = schemaObj.validate || this._compile(schemaObj); + } + + var valid = v(data); + if (v.$async === true) + return this._opts.async == '*' ? co(valid) : valid; + this.errors = v.errors; + return valid; +} + + +/** + * Create validating function for passed schema. + * @this Ajv + * @param {Object} schema schema object + * @param {Boolean} _meta true if schema is a meta-schema. Used internally to compile meta schemas of custom keywords. + * @return {Function} validating function + */ +function compile(schema, _meta) { + var schemaObj = this._addSchema(schema, undefined, _meta); + return schemaObj.validate || this._compile(schemaObj); +} + + +/** + * Adds schema to the instance. + * @this Ajv + * @param {Object|Array} schema schema or array of schemas. If array is passed, `key` and other parameters will be ignored. + * @param {String} key Optional schema key. Can be passed to `validate` method instead of schema object or id/ref. One schema per instance can have empty `id` and `key`. + * @param {Boolean} _skipValidation true to skip schema validation. Used internally, option validateSchema should be used instead. + * @param {Boolean} _meta true if schema is a meta-schema. Used internally, addMetaSchema should be used instead. + */ +function addSchema(schema, key, _skipValidation, _meta) { + if (Array.isArray(schema)){ + for (var i=0; i} errors optional array of validation errors, if not passed errors from the instance are used. + * @param {Object} options optional options with properties `separator` and `dataVar`. + * @return {String} human readable string with all errors descriptions + */ +function errorsText(errors, options) { + errors = errors || this.errors; + if (!errors) return 'No errors'; + options = options || {}; + var separator = options.separator === undefined ? ', ' : options.separator; + var dataVar = options.dataVar === undefined ? 'data' : options.dataVar; + + var text = ''; + for (var i=0; i=1&&t<=12&&a>=1&&a<=h[t]}function o(e,r){var t=e.match(u);return!!t&&(t[1]<=23&&t[2]<=59&&t[3]<=59&&(!r||t[5]))}function i(e){if(E.test(e))return!1;try{return new RegExp(e),!0}catch(e){return!1}}var 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";var p=e.compositeRule;e.compositeRule=d.compositeRule=!0,d.createErrors=!1;var m;d.opts.allErrors&&(m=d.opts.allErrors,d.opts.allErrors=!1),a+=" "+e.validate(d)+" ",d.createErrors=!0,m&&(d.opts.allErrors=m),e.compositeRule=d.compositeRule=p,a+=" if ("+f+") { ";var v=v||[];v.push(a),a="",!1!==e.createErrors?(a+=" { keyword: 'not' , dataPath: (dataPath || '') + "+e.errorPath+" , schemaPath: "+e.util.toQuotedString(l)+" , params: {} ",!1!==e.opts.messages&&(a+=" , message: 'should NOT be valid' "),e.opts.verbose&&(a+=" , schema: validate.schema"+n+" , parentSchema: validate.schema"+e.schemaPath+" , data: "+u+" "),a+=" } "):a+=" {} ";var y=a;a=v.pop(),a+=!e.compositeRule&&h?e.async?" throw new ValidationError(["+y+"]); ":" validate.errors = ["+y+"]; return false; ":" var err = "+y+"; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; ",a+=" } else { errors = "+c+"; if (vErrors !== null) { if ("+c+") vErrors.length = "+c+"; else vErrors = null; } ",e.opts.allErrors&&(a+=" } ")}else a+=" var err = ",!1!==e.createErrors?(a+=" { keyword: 'not' , dataPath: (dataPath || '') + "+e.errorPath+" , schemaPath: "+e.util.toQuotedString(l)+" , params: {} ",!1!==e.opts.messages&&(a+=" , message: 'should NOT be valid' "),e.opts.verbose&&(a+=" , schema: validate.schema"+n+" , parentSchema: validate.schema"+e.schemaPath+" , data: "+u+" "),a+=" } "):a+=" {} ",a+="; 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this.expectContextual("from"),e.source=this.type===O.string?this.parseExprAtom():this.unexpected(),this.semicolon(),this.finishNode(e,"ExportAllDeclaration");if(this.eat(O._default)){this.checkExport(t,"default",this.lastTokStart);var r;if(this.type===O._function||(r=this.isAsyncFunction())){var i=this.startNode();this.next(),r&&this.next(),e.declaration=this.parseFunction(i,"nullableID",!1,r)}else if(this.type===O._class){var s=this.startNode();e.declaration=this.parseClass(s,"nullableID")}else e.declaration=this.parseMaybeAssign(),this.semicolon();return this.finishNode(e,"ExportDefaultDeclaration")}if(this.shouldParseExportStatement())e.declaration=this.parseStatement(!0),"VariableDeclaration"===e.declaration.type?this.checkVariableExport(t,e.declaration.declarations):this.checkExport(t,e.declaration.id.name,e.declaration.id.start),e.specifiers=[],e.source=null;else{if(e.declaration=null,e.specifiers=this.parseExportSpecifiers(t),this.eatContextual("from"))e.source=this.type===O.string?this.parseExprAtom():this.unexpected();else{for(var o=0,a=e.specifiers;o=6&&e)switch(e.type){case"Identifier":this.inAsync&&"await"===e.name&&this.raise(e.start,"Can not use 'await' as identifier inside an async function");break;case"ObjectPattern":case"ArrayPattern":break;case"ObjectExpression":e.type="ObjectPattern";for(var r=0,i=e.properties;r=6&&(e.computed||e.method||e.shorthand))){var n,r=e.key;switch(r.type){case"Identifier":n=r.name;break;case"Literal":n=String(r.value);break;default:return}var i=e.kind;if(this.options.ecmaVersion>=6)"__proto__"===n&&"init"===i&&(t.proto&&this.raiseRecoverable(r.start,"Redefinition of __proto__ property"),t.proto=!0);else{var s=t[n="$"+n];if(s){("init"===i?this.strict&&s.init||s.get||s.set:s.init||s[i])&&this.raiseRecoverable(r.start,"Redefinition of property")}else s=t[n]={init:!1,get:!1,set:!1};s[i]=!0}}},Z.parseExpression=function(e,t){var n=this,r=this.start,i=this.startLoc,s=this.parseMaybeAssign(e,t);if(this.type===O.comma){var o=this.startNodeAt(r,i);for(o.expressions=[s];this.eat(O.comma);)o.expressions.push(n.parseMaybeAssign(e,t));return this.finishNode(o,"SequenceExpression")}return s},Z.parseMaybeAssign=function(e,t,n){if(this.inGenerator&&this.isContextual("yield"))return this.parseYield();var r=!1,i=-1,s=-1;t?(i=t.parenthesizedAssign,s=t.trailingComma,t.parenthesizedAssign=t.trailingComma=-1):(t=new h,r=!0);var o=this.start,a=this.startLoc;this.type!=O.parenL&&this.type!=O.name||(this.potentialArrowAt=this.start);var u=this.parseMaybeConditional(e,t);if(n&&(u=n.call(this,u,o,a)),this.type.isAssign){this.checkPatternErrors(t,!0),r||h.call(t);var c=this.startNodeAt(o,a);return c.operator=this.value,c.left=this.type===O.eq?this.toAssignable(u):u,t.shorthandAssign=-1,this.checkLVal(u),this.next(),c.right=this.parseMaybeAssign(e),this.finishNode(c,"AssignmentExpression")}return r&&this.checkExpressionErrors(t,!0),i>-1&&(t.parenthesizedAssign=i),s>-1&&(t.trailingComma=s),u},Z.parseMaybeConditional=function(e,t){var n=this.start,r=this.startLoc,i=this.parseExprOps(e,t);if(this.checkExpressionErrors(t))return i;if(this.eat(O.question)){var s=this.startNodeAt(n,r);return s.test=i,s.consequent=this.parseMaybeAssign(),this.expect(O.colon),s.alternate=this.parseMaybeAssign(e),this.finishNode(s,"ConditionalExpression")}return i},Z.parseExprOps=function(e,t){var n=this.start,r=this.startLoc,i=this.parseMaybeUnary(t,!1);return this.checkExpressionErrors(t)?i:i.start==n&&"ArrowFunctionExpression"===i.type?i:this.parseExprOp(i,n,r,-1,e)},Z.parseExprOp=function(e,t,n,r,i){var s=this.type.binop;if(null!=s&&(!i||this.type!==O._in)&&s>r){var o=this.type===O.logicalOR||this.type===O.logicalAND,a=this.value;this.next();var u=this.start,c=this.startLoc,l=this.parseExprOp(this.parseMaybeUnary(null,!1),u,c,s,i),p=this.buildBinary(t,n,e,l,a,o);return this.parseExprOp(p,t,n,r,i)}return e},Z.buildBinary=function(e,t,n,r,i,s){var o=this.startNodeAt(e,t);return o.left=n,o.operator=i,o.right=r,this.finishNode(o,s?"LogicalExpression":"BinaryExpression")},Z.parseMaybeUnary=function(e,t){var n,r=this,i=this.start,s=this.startLoc;if(this.inAsync&&this.isContextual("await"))n=this.parseAwait(e),t=!0;else if(this.type.prefix){var o=this.startNode(),a=this.type===O.incDec;o.operator=this.value,o.prefix=!0,this.next(),o.argument=this.parseMaybeUnary(null,!0),this.checkExpressionErrors(e,!0),a?this.checkLVal(o.argument):this.strict&&"delete"===o.operator&&"Identifier"===o.argument.type?this.raiseRecoverable(o.start,"Deleting local variable in strict mode"):t=!0,n=this.finishNode(o,a?"UpdateExpression":"UnaryExpression")}else{if(n=this.parseExprSubscripts(e),this.checkExpressionErrors(e))return n;for(;this.type.postfix&&!this.canInsertSemicolon();){var u=r.startNodeAt(i,s);u.operator=r.value,u.prefix=!1,u.argument=n,r.checkLVal(n),r.next(),n=r.finishNode(u,"UpdateExpression")}}return!t&&this.eat(O.starstar)?this.buildBinary(i,s,n,this.parseMaybeUnary(null,!1),"**",!1):n},Z.parseExprSubscripts=function(e){var t=this.start,n=this.startLoc,r=this.parseExprAtom(e),i="ArrowFunctionExpression"===r.type&&")"!==this.input.slice(this.lastTokStart,this.lastTokEnd);if(this.checkExpressionErrors(e)||i)return r;var s=this.parseSubscripts(r,t,n);return e&&"MemberExpression"===s.type&&(e.parenthesizedAssign>=s.start&&(e.parenthesizedAssign=-1),e.parenthesizedBind>=s.start&&(e.parenthesizedBind=-1)),s},Z.parseSubscripts=function(e,t,n,r){for(var i=this,s=this.options.ecmaVersion>=8&&"Identifier"===e.type&&"async"===e.name&&this.lastTokEnd==e.end&&!this.canInsertSemicolon(),o=void 0;;)if((o=i.eat(O.bracketL))||i.eat(O.dot)){var a=i.startNodeAt(t,n);a.object=e,a.property=o?i.parseExpression():i.parseIdent(!0),a.computed=!!o,o&&i.expect(O.bracketR),e=i.finishNode(a,"MemberExpression")}else if(!r&&i.eat(O.parenL)){var u=new h,c=i.yieldPos,l=i.awaitPos;i.yieldPos=0,i.awaitPos=0;var p=i.parseExprList(O.parenR,i.options.ecmaVersion>=8,!1,u);if(s&&!i.canInsertSemicolon()&&i.eat(O.arrow))return i.checkPatternErrors(u,!1),i.checkYieldAwaitInDefaultParams(),i.yieldPos=c,i.awaitPos=l,i.parseArrowExpression(i.startNodeAt(t,n),p,!0);i.checkExpressionErrors(u,!0),i.yieldPos=c||i.yieldPos,i.awaitPos=l||i.awaitPos;var f=i.startNodeAt(t,n);f.callee=e,f.arguments=p,e=i.finishNode(f,"CallExpression")}else{if(i.type!==O.backQuote)return e;var d=i.startNodeAt(t,n);d.tag=e,d.quasi=i.parseTemplate({isTagged:!0}),e=i.finishNode(d,"TaggedTemplateExpression")}},Z.parseExprAtom=function(e){var t,n=this.potentialArrowAt==this.start;switch(this.type){case O._super:this.inFunction||this.raise(this.start,"'super' outside of function or class");case O._this:var r=this.type===O._this?"ThisExpression":"Super";return t=this.startNode(),this.next(),this.finishNode(t,r);case O.name:var i=this.start,s=this.startLoc,o=this.parseIdent(this.type!==O.name);if(this.options.ecmaVersion>=8&&"async"===o.name&&!this.canInsertSemicolon()&&this.eat(O._function))return this.parseFunction(this.startNodeAt(i,s),!1,!1,!0);if(n&&!this.canInsertSemicolon()){if(this.eat(O.arrow))return this.parseArrowExpression(this.startNodeAt(i,s),[o],!1);if(this.options.ecmaVersion>=8&&"async"===o.name&&this.type===O.name)return o=this.parseIdent(),!this.canInsertSemicolon()&&this.eat(O.arrow)||this.unexpected(),this.parseArrowExpression(this.startNodeAt(i,s),[o],!0)}return o;case O.regexp:var a=this.value;return t=this.parseLiteral(a.value),t.regex={pattern:a.pattern,flags:a.flags},t;case O.num:case O.string:return this.parseLiteral(this.value);case O._null:case O._true:case O._false:return t=this.startNode(),t.value=this.type===O._null?null:this.type===O._true,t.raw=this.type.keyword,this.next(),this.finishNode(t,"Literal");case O.parenL:var u=this.start,c=this.parseParenAndDistinguishExpression(n);return e&&(e.parenthesizedAssign<0&&!this.isSimpleAssignTarget(c)&&(e.parenthesizedAssign=u),e.parenthesizedBind<0&&(e.parenthesizedBind=u)),c;case O.bracketL:return t=this.startNode(),this.next(),t.elements=this.parseExprList(O.bracketR,!0,!0,e),this.finishNode(t,"ArrayExpression");case O.braceL:return this.parseObj(!1,e);case O._function:return t=this.startNode(),this.next(),this.parseFunction(t,!1);case O._class:return this.parseClass(this.startNode(),!1);case O._new:return this.parseNew();case O.backQuote:return this.parseTemplate();default:this.unexpected()}},Z.parseLiteral=function(e){var t=this.startNode();return t.value=e,t.raw=this.input.slice(this.start,this.end),this.next(),this.finishNode(t,"Literal")},Z.parseParenExpression=function(){this.expect(O.parenL);var e=this.parseExpression();return this.expect(O.parenR),e},Z.parseParenAndDistinguishExpression=function(e){var t,n=this,r=this.start,i=this.startLoc,s=this.options.ecmaVersion>=8;if(this.options.ecmaVersion>=6){this.next();var o,a,u=this.start,c=this.startLoc,l=[],p=!0,f=!1,d=new h,y=this.yieldPos,m=this.awaitPos;for(this.yieldPos=0,this.awaitPos=0;this.type!==O.parenR;){if(p?p=!1:n.expect(O.comma),s&&n.afterTrailingComma(O.parenR,!0)){f=!0;break}if(n.type===O.ellipsis){o=n.start,l.push(n.parseParenItem(n.parseRestBinding())),n.type===O.comma&&n.raise(n.start,"Comma is not permitted after the rest element");break}n.type!==O.parenL||a||(a=n.start),l.push(n.parseMaybeAssign(!1,d,n.parseParenItem))}var g=this.start,v=this.startLoc;if(this.expect(O.parenR),e&&!this.canInsertSemicolon()&&this.eat(O.arrow))return this.checkPatternErrors(d,!1),this.checkYieldAwaitInDefaultParams(),a&&this.unexpected(a),this.yieldPos=y,this.awaitPos=m,this.parseParenArrowList(r,i,l);l.length&&!f||this.unexpected(this.lastTokStart),o&&this.unexpected(o),this.checkExpressionErrors(d,!0),this.yieldPos=y||this.yieldPos,this.awaitPos=m||this.awaitPos,l.length>1?((t=this.startNodeAt(u,c)).expressions=l,this.finishNodeAt(t,"SequenceExpression",g,v)):t=l[0]}else t=this.parseParenExpression();if(this.options.preserveParens){var b=this.startNodeAt(r,i);return b.expression=t,this.finishNode(b,"ParenthesizedExpression")}return t},Z.parseParenItem=function(e){return e},Z.parseParenArrowList=function(e,t,n){return this.parseArrowExpression(this.startNodeAt(e,t),n)};var X=[];Z.parseNew=function(){var e=this.startNode(),t=this.parseIdent(!0);if(this.options.ecmaVersion>=6&&this.eat(O.dot))return e.meta=t,e.property=this.parseIdent(!0),"target"!==e.property.name&&this.raiseRecoverable(e.property.start,"The only valid meta property for new is new.target"),this.inFunction||this.raiseRecoverable(e.start,"new.target can only be used in functions"),this.finishNode(e,"MetaProperty");var n=this.start,r=this.startLoc;return e.callee=this.parseSubscripts(this.parseExprAtom(),n,r,!0),this.eat(O.parenL)?e.arguments=this.parseExprList(O.parenR,this.options.ecmaVersion>=8,!1):e.arguments=X,this.finishNode(e,"NewExpression")},Z.parseTemplateElement=function(e){var t=e.isTagged,n=this.startNode();return this.type===O.invalidTemplate?(t||this.raiseRecoverable(this.start,"Bad escape sequence in untagged template literal"),n.value={raw:this.value,cooked:null}):n.value={raw:this.input.slice(this.start,this.end).replace(/\r\n?/g,"\n"),cooked:this.value},this.next(),n.tail=this.type===O.backQuote,this.finishNode(n,"TemplateElement")},Z.parseTemplate=function(e){var t=this;void 0===e&&(e={});var n=e.isTagged;void 0===n&&(n=!1);var r=this.startNode();this.next(),r.expressions=[];var i=this.parseTemplateElement({isTagged:n});for(r.quasis=[i];!i.tail;)t.expect(O.dollarBraceL),r.expressions.push(t.parseExpression()),t.expect(O.braceR),r.quasis.push(i=t.parseTemplateElement({isTagged:n}));return this.next(),this.finishNode(r,"TemplateLiteral")},Z.isAsyncProp=function(e){return!e.computed&&"Identifier"===e.key.type&&"async"===e.key.name&&(this.type===O.name||this.type===O.num||this.type===O.string||this.type===O.bracketL||this.type.keyword)&&!T.test(this.input.slice(this.lastTokEnd,this.start))},Z.parseObj=function(e,t){var n=this,r=this.startNode(),i=!0,s={};for(r.properties=[],this.next();!this.eat(O.braceR);){if(i)i=!1;else if(n.expect(O.comma),n.afterTrailingComma(O.braceR))break;var o=n.startNode(),a=void 0,u=void 0,c=void 0,l=void 0;n.options.ecmaVersion>=6&&(o.method=!1,o.shorthand=!1,(e||t)&&(c=n.start,l=n.startLoc),e||(a=n.eat(O.star))),n.parsePropertyName(o),!e&&n.options.ecmaVersion>=8&&!a&&n.isAsyncProp(o)?(u=!0,n.parsePropertyName(o,t)):u=!1,n.parsePropertyValue(o,e,a,u,c,l,t),n.checkPropClash(o,s),r.properties.push(n.finishNode(o,"Property"))}return this.finishNode(r,e?"ObjectPattern":"ObjectExpression")},Z.parsePropertyValue=function(e,t,n,r,i,s,o){if((n||r)&&this.type===O.colon&&this.unexpected(),this.eat(O.colon))e.value=t?this.parseMaybeDefault(this.start,this.startLoc):this.parseMaybeAssign(!1,o),e.kind="init";else if(this.options.ecmaVersion>=6&&this.type===O.parenL)t&&this.unexpected(),e.kind="init",e.method=!0,e.value=this.parseMethod(n,r);else if(this.options.ecmaVersion>=5&&!e.computed&&"Identifier"===e.key.type&&("get"===e.key.name||"set"===e.key.name)&&this.type!=O.comma&&this.type!=O.braceR){(n||r||t)&&this.unexpected(),e.kind=e.key.name,this.parsePropertyName(e),e.value=this.parseMethod(!1);var a="get"===e.kind?0:1;if(e.value.params.length!==a){var u=e.value.start;"get"===e.kind?this.raiseRecoverable(u,"getter should have no params"):this.raiseRecoverable(u,"setter should have exactly one param")}else"set"===e.kind&&"RestElement"===e.value.params[0].type&&this.raiseRecoverable(e.value.params[0].start,"Setter cannot use rest params")}else this.options.ecmaVersion>=6&&!e.computed&&"Identifier"===e.key.type?(this.checkUnreserved(e.key),e.kind="init",t?e.value=this.parseMaybeDefault(i,s,e.key):this.type===O.eq&&o?(o.shorthandAssign<0&&(o.shorthandAssign=this.start),e.value=this.parseMaybeDefault(i,s,e.key)):e.value=e.key,e.shorthand=!0):this.unexpected()},Z.parsePropertyName=function(e){if(this.options.ecmaVersion>=6){if(this.eat(O.bracketL))return e.computed=!0,e.key=this.parseMaybeAssign(),this.expect(O.bracketR),e.key;e.computed=!1}return e.key=this.type===O.num||this.type===O.string?this.parseExprAtom():this.parseIdent(!0)},Z.initFunction=function(e){e.id=null,this.options.ecmaVersion>=6&&(e.generator=!1,e.expression=!1),this.options.ecmaVersion>=8&&(e.async=!1)},Z.parseMethod=function(e,t){var n=this.startNode(),r=this.inGenerator,i=this.inAsync,s=this.yieldPos,o=this.awaitPos,a=this.inFunction;return this.initFunction(n),this.options.ecmaVersion>=6&&(n.generator=e),this.options.ecmaVersion>=8&&(n.async=!!t),this.inGenerator=n.generator,this.inAsync=n.async,this.yieldPos=0,this.awaitPos=0,this.inFunction=!0,this.enterFunctionScope(),this.expect(O.parenL),n.params=this.parseBindingList(O.parenR,!1,this.options.ecmaVersion>=8),this.checkYieldAwaitInDefaultParams(),this.parseFunctionBody(n,!1),this.inGenerator=r,this.inAsync=i,this.yieldPos=s,this.awaitPos=o,this.inFunction=a,this.finishNode(n,"FunctionExpression")},Z.parseArrowExpression=function(e,t,n){var r=this.inGenerator,i=this.inAsync,s=this.yieldPos,o=this.awaitPos,a=this.inFunction;return this.enterFunctionScope(),this.initFunction(e),this.options.ecmaVersion>=8&&(e.async=!!n),this.inGenerator=!1,this.inAsync=e.async,this.yieldPos=0,this.awaitPos=0,this.inFunction=!0,e.params=this.toAssignableList(t,!0),this.parseFunctionBody(e,!0),this.inGenerator=r,this.inAsync=i,this.yieldPos=s,this.awaitPos=o,this.inFunction=a,this.finishNode(e,"ArrowFunctionExpression")},Z.parseFunctionBody=function(e,t){var n=t&&this.type!==O.braceL,r=this.strict,i=!1;if(n)e.body=this.parseMaybeAssign(),e.expression=!0,this.checkParams(e,!1);else{var s=this.options.ecmaVersion>=7&&!this.isSimpleParamList(e.params);r&&!s||(i=this.strictDirective(this.end))&&s&&this.raiseRecoverable(e.start,"Illegal 'use strict' directive in function with non-simple parameter list");var o=this.labels;this.labels=[],i&&(this.strict=!0),this.checkParams(e,!r&&!i&&!t&&this.isSimpleParamList(e.params)),e.body=this.parseBlock(!1),e.expression=!1,this.labels=o}this.exitFunctionScope(),this.strict&&e.id&&this.checkLVal(e.id,"none"),this.strict=r},Z.isSimpleParamList=function(e){for(var t=0,n=e;t0;)t[n]=arguments[n+1];for(var r=0,i=t;r=1;t--){var n=e.context[t];if("function"===n.token)return n.generator}return!1},se.updateContext=function(e){var t,n=this.type;n.keyword&&e==O.dot?this.exprAllowed=!1:(t=n.updateContext)?t.call(this,e):this.exprAllowed=n.beforeExpr},O.parenR.updateContext=O.braceR.updateContext=function(){if(1!=this.context.length){var e=this.context.pop();e===ie.b_stat&&"function"===this.curContext().token&&(e=this.context.pop()),this.exprAllowed=!e.isExpr}else this.exprAllowed=!0},O.braceL.updateContext=function(e){this.context.push(this.braceIsBlock(e)?ie.b_stat:ie.b_expr),this.exprAllowed=!0},O.dollarBraceL.updateContext=function(){this.context.push(ie.b_tmpl),this.exprAllowed=!0},O.parenL.updateContext=function(e){var t=e===O._if||e===O._for||e===O._with||e===O._while;this.context.push(t?ie.p_stat:ie.p_expr),this.exprAllowed=!0},O.incDec.updateContext=function(){},O._function.updateContext=O._class.updateContext=function(e){e.beforeExpr&&e!==O.semi&&e!==O._else&&(e!==O.colon&&e!==O.braceL||this.curContext()!==ie.b_stat)?this.context.push(ie.f_expr):this.context.push(ie.f_stat),this.exprAllowed=!1},O.backQuote.updateContext=function(){this.curContext()===ie.q_tmpl?this.context.pop():this.context.push(ie.q_tmpl),this.exprAllowed=!1},O.star.updateContext=function(e){if(e==O._function){var t=this.context.length-1;this.context[t]===ie.f_expr?this.context[t]=ie.f_expr_gen:this.context[t]=ie.f_gen}this.exprAllowed=!0},O.name.updateContext=function(e){var t=!1;this.options.ecmaVersion>=6&&("of"==this.value&&!this.exprAllowed||"yield"==this.value&&this.inGeneratorContext())&&(t=!0),this.exprAllowed=t};var oe=function(e){this.type=e.type,this.value=e.value,this.start=e.start,this.end=e.end,e.options.locations&&(this.loc=new M(e,e.startLoc,e.endLoc)),e.options.ranges&&(this.range=[e.start,e.end])},ae=V.prototype,ue="object"==typeof Packages&&"[object JavaPackage]"==Object.prototype.toString.call(Packages);ae.next=function(){this.options.onToken&&this.options.onToken(new oe(this)),this.lastTokEnd=this.end,this.lastTokStart=this.start,this.lastTokEndLoc=this.endLoc,this.lastTokStartLoc=this.startLoc,this.nextToken()},ae.getToken=function(){return this.next(),new oe(this)},"undefined"!=typeof Symbol&&(ae[Symbol.iterator]=function(){var e=this;return{next:function(){var t=e.getToken();return{done:t.type===O.eof,value:t}}}}),ae.curContext=function(){return this.context[this.context.length-1]},ae.nextToken=function(){var e=this.curContext();return e&&e.preserveSpace||this.skipSpace(),this.start=this.pos,this.options.locations&&(this.startLoc=this.curPosition()),this.pos>=this.input.length?this.finishToken(O.eof):e.override?e.override(this):void this.readToken(this.fullCharCodeAtPos())},ae.readToken=function(e){return n(e,this.options.ecmaVersion>=6)||92===e?this.readWord():this.getTokenFromCode(e)},ae.fullCharCodeAtPos=function(){var e=this.input.charCodeAt(this.pos);return e<=55295||e>=57344?e:(e<<10)+this.input.charCodeAt(this.pos+1)-56613888},ae.skipBlockComment=function(){var e=this,t=this.options.onComment&&this.curPosition(),n=this.pos,r=this.input.indexOf("*/",this.pos+=2);if(-1===r&&this.raise(this.pos-2,"Unterminated comment"),this.pos=r+2,this.options.locations){N.lastIndex=n;for(var i;(i=N.exec(this.input))&&i.index8&&t<14||t>=5760&&P.test(String.fromCharCode(t))))break e;++e.pos}}},ae.finishToken=function(e,t){this.end=this.pos,this.options.locations&&(this.endLoc=this.curPosition());var n=this.type;this.type=e,this.value=t,this.updateContext(n)},ae.readToken_dot=function(){var e=this.input.charCodeAt(this.pos+1);if(e>=48&&e<=57)return this.readNumber(!0);var t=this.input.charCodeAt(this.pos+2);return this.options.ecmaVersion>=6&&46===e&&46===t?(this.pos+=3,this.finishToken(O.ellipsis)):(++this.pos,this.finishToken(O.dot))},ae.readToken_slash=function(){var e=this.input.charCodeAt(this.pos+1);return this.exprAllowed?(++this.pos,this.readRegexp()):61===e?this.finishOp(O.assign,2):this.finishOp(O.slash,1)},ae.readToken_mult_modulo_exp=function(e){var t=this.input.charCodeAt(this.pos+1),n=1,r=42===e?O.star:O.modulo;return this.options.ecmaVersion>=7&&42===t&&(++n,r=O.starstar,t=this.input.charCodeAt(this.pos+2)),61===t?this.finishOp(O.assign,n+1):this.finishOp(r,n)},ae.readToken_pipe_amp=function(e){var t=this.input.charCodeAt(this.pos+1);return t===e?this.finishOp(124===e?O.logicalOR:O.logicalAND,2):61===t?this.finishOp(O.assign,2):this.finishOp(124===e?O.bitwiseOR:O.bitwiseAND,1)},ae.readToken_caret=function(){return 61===this.input.charCodeAt(this.pos+1)?this.finishOp(O.assign,2):this.finishOp(O.bitwiseXOR,1)},ae.readToken_plus_min=function(e){var t=this.input.charCodeAt(this.pos+1);return t===e?45!=t||this.inModule||62!=this.input.charCodeAt(this.pos+2)||0!==this.lastTokEnd&&!T.test(this.input.slice(this.lastTokEnd,this.pos))?this.finishOp(O.incDec,2):(this.skipLineComment(3),this.skipSpace(),this.nextToken()):61===t?this.finishOp(O.assign,2):this.finishOp(O.plusMin,1)},ae.readToken_lt_gt=function(e){var t=this.input.charCodeAt(this.pos+1),n=1;return t===e?(n=62===e&&62===this.input.charCodeAt(this.pos+2)?3:2,61===this.input.charCodeAt(this.pos+n)?this.finishOp(O.assign,n+1):this.finishOp(O.bitShift,n)):33!=t||60!=e||this.inModule||45!=this.input.charCodeAt(this.pos+2)||45!=this.input.charCodeAt(this.pos+3)?(61===t&&(n=2),this.finishOp(O.relational,n)):(this.skipLineComment(4),this.skipSpace(),this.nextToken())},ae.readToken_eq_excl=function(e){var t=this.input.charCodeAt(this.pos+1);return 61===t?this.finishOp(O.equality,61===this.input.charCodeAt(this.pos+2)?3:2):61===e&&62===t&&this.options.ecmaVersion>=6?(this.pos+=2,this.finishToken(O.arrow)):this.finishOp(61===e?O.eq:O.prefix,1)},ae.getTokenFromCode=function(e){switch(e){case 46:return this.readToken_dot();case 40:return++this.pos,this.finishToken(O.parenL);case 41:return++this.pos,this.finishToken(O.parenR);case 59:return++this.pos,this.finishToken(O.semi);case 44:return++this.pos,this.finishToken(O.comma);case 91:return++this.pos,this.finishToken(O.bracketL);case 93:return++this.pos,this.finishToken(O.bracketR);case 123:return++this.pos,this.finishToken(O.braceL);case 125:return++this.pos,this.finishToken(O.braceR);case 58:return++this.pos,this.finishToken(O.colon);case 63:return++this.pos,this.finishToken(O.question);case 96:if(this.options.ecmaVersion<6)break;return++this.pos,this.finishToken(O.backQuote);case 48:var t=this.input.charCodeAt(this.pos+1);if(120===t||88===t)return this.readRadixNumber(16);if(this.options.ecmaVersion>=6){if(111===t||79===t)return this.readRadixNumber(8);if(98===t||66===t)return this.readRadixNumber(2)}case 49:case 50:case 51:case 52:case 53:case 54:case 55:case 56:case 57:return this.readNumber(!1);case 34:case 39:return this.readString(e);case 47:return this.readToken_slash();case 37:case 42:return this.readToken_mult_modulo_exp(e);case 124:case 38:return this.readToken_pipe_amp(e);case 94:return this.readToken_caret();case 43:case 45:return this.readToken_plus_min(e);case 60:case 62:return this.readToken_lt_gt(e);case 61:case 33:return this.readToken_eq_excl(e);case 126:return this.finishOp(O.prefix,1)}this.raise(this.pos,"Unexpected character '"+y(e)+"'")},ae.finishOp=function(e,t){var n=this.input.slice(this.pos,this.pos+t);return this.pos+=t,this.finishToken(e,n)};var ce=!!d("￿","u");ae.readRegexp=function(){for(var e,t,n=this,r=this.pos;;){n.pos>=n.input.length&&n.raise(r,"Unterminated regular expression");var i=n.input.charAt(n.pos);if(T.test(i)&&n.raise(r,"Unterminated regular expression"),e)e=!1;else{if("["===i)t=!0;else if("]"===i&&t)t=!1;else if("/"===i&&!t)break;e="\\"===i}++n.pos}var s=this.input.slice(r,this.pos);++this.pos;var o=this.readWord1(),a=s,u="";if(o){var c=/^[gim]*$/;this.options.ecmaVersion>=6&&(c=/^[gimuy]*$/),c.test(o)||this.raise(r,"Invalid regular expression flag"),o.indexOf("u")>=0&&(ce?u="u":(a=(a=a.replace(/\\u\{([0-9a-fA-F]+)\}/g,function(e,t,i){return(t=Number("0x"+t))>1114111&&n.raise(r+i+3,"Code point out of bounds"),"x"})).replace(/\\u([a-fA-F0-9]{4})|[\uD800-\uDBFF][\uDC00-\uDFFF]/g,"x"),u=u.replace("u","")))}var l=null;return ue||(d(a,u,r,this),l=d(s,o)),this.finishToken(O.regexp,{pattern:s,flags:o,value:l})},ae.readInt=function(e,t){for(var n=this,r=this.pos,i=0,s=0,o=null==t?1/0:t;s=97?a-97+10:a>=65?a-65+10:a>=48&&a<=57?a-48:1/0)>=e)break;++n.pos,i=i*e+u}return this.pos===r||null!=t&&this.pos-r!==t?null:i},ae.readRadixNumber=function(e){this.pos+=2;var t=this.readInt(e);return null==t&&this.raise(this.start+2,"Expected number in radix "+e),n(this.fullCharCodeAtPos())&&this.raise(this.pos,"Identifier directly after number"),this.finishToken(O.num,t)},ae.readNumber=function(e){var t=this.pos,r=!1,i=48===this.input.charCodeAt(this.pos);e||null!==this.readInt(10)||this.raise(t,"Invalid number"),i&&this.pos==t+1&&(i=!1);var s=this.input.charCodeAt(this.pos);46!==s||i||(++this.pos,this.readInt(10),r=!0,s=this.input.charCodeAt(this.pos)),69!==s&&101!==s||i||(43!==(s=this.input.charCodeAt(++this.pos))&&45!==s||++this.pos,null===this.readInt(10)&&this.raise(t,"Invalid number"),r=!0),n(this.fullCharCodeAtPos())&&this.raise(this.pos,"Identifier directly after number");var o,a=this.input.slice(t,this.pos);return r?o=parseFloat(a):i&&1!==a.length?this.strict?this.raise(t,"Invalid number"):o=/[89]/.test(a)?parseInt(a,10):parseInt(a,8):o=parseInt(a,10),this.finishToken(O.num,o)},ae.readCodePoint=function(){var e;if(123===this.input.charCodeAt(this.pos)){this.options.ecmaVersion<6&&this.unexpected();var t=++this.pos;e=this.readHexChar(this.input.indexOf("}",this.pos)-this.pos),++this.pos,e>1114111&&this.invalidStringToken(t,"Code point out of bounds")}else e=this.readHexChar(4);return e},ae.readString=function(e){for(var t=this,n="",r=++this.pos;;){t.pos>=t.input.length&&t.raise(t.start,"Unterminated string 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e.pos!==e.start||e.type!==O.template&&e.type!==O.invalidTemplate?(t+=e.input.slice(n,e.pos),e.finishToken(O.template,t)):36===r?(e.pos+=2,e.finishToken(O.dollarBraceL)):(++e.pos,e.finishToken(O.backQuote));if(92===r)t+=e.input.slice(n,e.pos),t+=e.readEscapedChar(!0),n=e.pos;else if(o(r)){switch(t+=e.input.slice(n,e.pos),++e.pos,r){case 13:10===e.input.charCodeAt(e.pos)&&++e.pos;case 10:t+="\n";break;default:t+=String.fromCharCode(r)}e.options.locations&&(++e.curLine,e.lineStart=e.pos),n=e.pos}else++e.pos}},ae.readInvalidTemplateToken=function(){for(var e=this;this.pos=48&&t<=55){var n=this.input.substr(this.pos-1,3).match(/^[0-7]+/)[0],r=parseInt(n,8);return r>255&&(n=n.slice(0,-1),r=parseInt(n,8)),"0"!==n&&(this.strict||e)&&this.invalidStringToken(this.pos-2,"Octal literal in strict mode"),this.pos+=n.length-1,String.fromCharCode(r)}return String.fromCharCode(t)}},ae.readHexChar=function(e){var t=this.pos,n=this.readInt(16,e);return null===n&&this.invalidStringToken(t,"Bad character 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r=e[t];e[t]=e[n],e[n]=r}function g(e,t,n,r,s){if(0===e.length)return-1;if("string"==typeof n?(r=n,n=0):n>2147483647?n=2147483647:n<-2147483648&&(n=-2147483648),n=+n,G(n)&&(n=s?0:e.length-1),n<0&&(n=e.length+n),n>=e.length){if(s)return-1;n=e.length-1}else if(n<0){if(!s)return-1;n=0}if("string"==typeof t&&(t=i.from(t,r)),i.isBuffer(t))return 0===t.length?-1:v(e,t,n,r,s);if("number"==typeof t)return t&=255,"function"==typeof Uint8Array.prototype.indexOf?s?Uint8Array.prototype.indexOf.call(e,t,n):Uint8Array.prototype.lastIndexOf.call(e,t,n):v(e,[t],n,r,s);throw new TypeError("val must be string, number or Buffer")}function v(e,t,n,r,i){function s(e,t){return 1===o?e[t]:e.readUInt16BE(t*o)}var o=1,a=e.length,u=t.length;if(void 0!==r&&("ucs2"===(r=String(r).toLowerCase())||"ucs-2"===r||"utf16le"===r||"utf-16le"===r)){if(e.length<2||t.length<2)return-1;o=2,a/=2,u/=2,n/=2}var c;if(i){var l=-1;for(c=n;ca&&(n=a-u),c=n;c>=0;c--){for(var p=!0,h=0;hi&&(r=i):r=i;var s=t.length;if(s%2!=0)throw new 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q(this.state)),this.state.lastTokEnd=this.state.end,this.state.lastTokStart=this.state.start,this.state.lastTokEndLoc=this.state.endLoc,this.state.lastTokStartLoc=this.state.startLoc,this.nextToken()},e.prototype.eat=function(e){return!!this.match(e)&&(this.next(),!0)},e.prototype.match=function(e){return this.state.type===e},e.prototype.isKeyword=function(e){return y(e)},e.prototype.lookahead=function(){var e=this.state;this.state=e.clone(!0),this.isLookahead=!0,this.next(),this.isLookahead=!1;var t=this.state.clone(!0);return this.state=e,t},e.prototype.setStrict=function(e){if(this.state.strict=e,this.match(B.num)||this.match(B.string)){for(this.state.pos=this.state.start;this.state.pos=this.input.length?this.finishToken(B.eof):e.override?e.override(this):this.readToken(this.fullCharCodeAtPos())},e.prototype.readToken=function(e){return s(e)||92===e?this.readWord():this.getTokenFromCode(e)},e.prototype.fullCharCodeAtPos=function(){var e=this.input.charCodeAt(this.state.pos);return e<=55295||e>=57344?e:(e<<10)+this.input.charCodeAt(this.state.pos+1)-56613888},e.prototype.pushComment=function(e,t,r,n,i,s){var a={type:e?"CommentBlock":"CommentLine",value:t,start:r,end:n,loc:new V(i,s)};this.isLookahead||(this.state.tokens.push(a),this.state.comments.push(a),this.addComment(a))},e.prototype.skipBlockComment=function(){var e=this.state.curPosition(),t=this.state.pos,r=this.input.indexOf("*/",this.state.pos+=2);-1===r&&this.raise(this.state.pos-2,"Unterminated comment"),this.state.pos=r+2,N.lastIndex=t;for(var n=void 0;(n=N.exec(this.input))&&n.index8&&e<14||e>=5760&&I.test(String.fromCharCode(e))))break e;++this.state.pos}}},e.prototype.finishToken=function(e,t){this.state.end=this.state.pos,this.state.endLoc=this.state.curPosition();var r=this.state.type;this.state.type=e,this.state.value=t,this.updateContext(r)},e.prototype.readToken_dot=function(){var e=this.input.charCodeAt(this.state.pos+1);if(e>=48&&e<=57)return this.readNumber(!0);var t=this.input.charCodeAt(this.state.pos+2);return 46===e&&46===t?(this.state.pos+=3,this.finishToken(B.ellipsis)):(++this.state.pos,this.finishToken(B.dot))},e.prototype.readToken_slash=function(){return this.state.exprAllowed?(++this.state.pos,this.readRegexp()):61===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.assign,2):this.finishOp(B.slash,1)},e.prototype.readToken_mult_modulo=function(e){var t=42===e?B.star:B.modulo,r=1,n=this.input.charCodeAt(this.state.pos+1);return 42===n&&(r++,n=this.input.charCodeAt(this.state.pos+2),t=B.exponent),61===n&&(r++,t=B.assign),this.finishOp(t,r)},e.prototype.readToken_pipe_amp=function(e){var t=this.input.charCodeAt(this.state.pos+1);return t===e?this.finishOp(124===e?B.logicalOR:B.logicalAND,2):61===t?this.finishOp(B.assign,2):124===e&&125===t&&this.hasPlugin("flow")?this.finishOp(B.braceBarR,2):this.finishOp(124===e?B.bitwiseOR:B.bitwiseAND,1)},e.prototype.readToken_caret=function(){return 61===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.assign,2):this.finishOp(B.bitwiseXOR,1)},e.prototype.readToken_plus_min=function(e){var t=this.input.charCodeAt(this.state.pos+1);return t===e?45===t&&62===this.input.charCodeAt(this.state.pos+2)&&j.test(this.input.slice(this.state.lastTokEnd,this.state.pos))?(this.skipLineComment(3),this.skipSpace(),this.nextToken()):this.finishOp(B.incDec,2):61===t?this.finishOp(B.assign,2):this.finishOp(B.plusMin,1)},e.prototype.readToken_lt_gt=function(e){var t=this.input.charCodeAt(this.state.pos+1),r=1;return t===e?(r=62===e&&62===this.input.charCodeAt(this.state.pos+2)?3:2,61===this.input.charCodeAt(this.state.pos+r)?this.finishOp(B.assign,r+1):this.finishOp(B.bitShift,r)):33===t&&60===e&&45===this.input.charCodeAt(this.state.pos+2)&&45===this.input.charCodeAt(this.state.pos+3)?(this.inModule&&this.unexpected(),this.skipLineComment(4),this.skipSpace(),this.nextToken()):(61===t&&(r=2),this.finishOp(B.relational,r))},e.prototype.readToken_eq_excl=function(e){var t=this.input.charCodeAt(this.state.pos+1);return 61===t?this.finishOp(B.equality,61===this.input.charCodeAt(this.state.pos+2)?3:2):61===e&&62===t?(this.state.pos+=2,this.finishToken(B.arrow)):this.finishOp(61===e?B.eq:B.prefix,1)},e.prototype.getTokenFromCode=function(e){switch(e){case 46:return this.readToken_dot();case 40:return++this.state.pos,this.finishToken(B.parenL);case 41:return++this.state.pos,this.finishToken(B.parenR);case 59:return++this.state.pos,this.finishToken(B.semi);case 44:return++this.state.pos,this.finishToken(B.comma);case 91:return++this.state.pos,this.finishToken(B.bracketL);case 93:return++this.state.pos,this.finishToken(B.bracketR);case 123:return this.hasPlugin("flow")&&124===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.braceBarL,2):(++this.state.pos,this.finishToken(B.braceL));case 125:return++this.state.pos,this.finishToken(B.braceR);case 58:return this.hasPlugin("functionBind")&&58===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.doubleColon,2):(++this.state.pos,this.finishToken(B.colon));case 63:return++this.state.pos,this.finishToken(B.question);case 64:return++this.state.pos,this.finishToken(B.at);case 96:return++this.state.pos,this.finishToken(B.backQuote);case 48:var t=this.input.charCodeAt(this.state.pos+1);if(120===t||88===t)return this.readRadixNumber(16);if(111===t||79===t)return this.readRadixNumber(8);if(98===t||66===t)return this.readRadixNumber(2);case 49:case 50:case 51:case 52:case 53:case 54:case 55:case 56:case 57:return this.readNumber(!1);case 34:case 39:return this.readString(e);case 47:return this.readToken_slash();case 37:case 42:return this.readToken_mult_modulo(e);case 124:case 38:return this.readToken_pipe_amp(e);case 94:return this.readToken_caret();case 43:case 45:return this.readToken_plus_min(e);case 60:case 62:return this.readToken_lt_gt(e);case 61:case 33:return this.readToken_eq_excl(e);case 126:return this.finishOp(B.prefix,1)}this.raise(this.state.pos,"Unexpected character '"+c(e)+"'")},e.prototype.finishOp=function(e,t){var r=this.input.slice(this.state.pos,this.state.pos+t);return this.state.pos+=t,this.finishToken(e,r)},e.prototype.readRegexp=function(){for(var e=this.state.pos,t=void 0,r=void 0;;){this.state.pos>=this.input.length&&this.raise(e,"Unterminated regular expression");var n=this.input.charAt(this.state.pos);if(j.test(n)&&this.raise(e,"Unterminated regular expression"),t)t=!1;else{if("["===n)r=!0;else if("]"===n&&r)r=!1;else if("/"===n&&!r)break;t="\\"===n}++this.state.pos}var i=this.input.slice(e,this.state.pos);++this.state.pos;var s=this.readWord1();if(s){/^[gmsiyu]*$/.test(s)||this.raise(e,"Invalid regular expression flag")}return this.finishToken(B.regexp,{pattern:i,flags:s})},e.prototype.readInt=function(e,t){for(var r=this.state.pos,n=0,i=0,s=null==t?1/0:t;i=97?a-97+10:a>=65?a-65+10:a>=48&&a<=57?a-48:1/0)>=e)break;++this.state.pos,n=n*e+o}return this.state.pos===r||null!=t&&this.state.pos-r!==t?null:n},e.prototype.readRadixNumber=function(e){this.state.pos+=2;var t=this.readInt(e);return null==t&&this.raise(this.state.start+2,"Expected number in radix "+e),s(this.fullCharCodeAtPos())&&this.raise(this.state.pos,"Identifier directly after number"),this.finishToken(B.num,t)},e.prototype.readNumber=function(e){var t=this.state.pos,r=48===this.input.charCodeAt(t),n=!1;e||null!==this.readInt(10)||this.raise(t,"Invalid number"),r&&this.state.pos==t+1&&(r=!1);var i=this.input.charCodeAt(this.state.pos);46!==i||r||(++this.state.pos,this.readInt(10),n=!0,i=this.input.charCodeAt(this.state.pos)),69!==i&&101!==i||r||(43!==(i=this.input.charCodeAt(++this.state.pos))&&45!==i||++this.state.pos,null===this.readInt(10)&&this.raise(t,"Invalid number"),n=!0),s(this.fullCharCodeAtPos())&&this.raise(this.state.pos,"Identifier directly after number");var a=this.input.slice(t,this.state.pos),o=void 0;return n?o=parseFloat(a):r&&1!==a.length?this.state.strict?this.raise(t,"Invalid number"):o=/[89]/.test(a)?parseInt(a,10):parseInt(a,8):o=parseInt(a,10),this.finishToken(B.num,o)},e.prototype.readCodePoint=function(e){var t=void 0;if(123===this.input.charCodeAt(this.state.pos)){var r=++this.state.pos;if(t=this.readHexChar(this.input.indexOf("}",this.state.pos)-this.state.pos,e),++this.state.pos,null===t)--this.state.invalidTemplateEscapePosition;else if(t>1114111){if(!e)return this.state.invalidTemplateEscapePosition=r-2,null;this.raise(r,"Code point out of bounds")}}else t=this.readHexChar(4,e);return t},e.prototype.readString=function(e){for(var t="",r=++this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated string constant");var n=this.input.charCodeAt(this.state.pos);if(n===e)break;92===n?(t+=this.input.slice(r,this.state.pos),t+=this.readEscapedChar(!1),r=this.state.pos):(u(n)&&this.raise(this.state.start,"Unterminated string constant"),++this.state.pos)}return t+=this.input.slice(r,this.state.pos++),this.finishToken(B.string,t)},e.prototype.readTmplToken=function(){for(var e="",t=this.state.pos,r=!1;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated template");var n=this.input.charCodeAt(this.state.pos);if(96===n||36===n&&123===this.input.charCodeAt(this.state.pos+1))return this.state.pos===this.state.start&&this.match(B.template)?36===n?(this.state.pos+=2,this.finishToken(B.dollarBraceL)):(++this.state.pos,this.finishToken(B.backQuote)):(e+=this.input.slice(t,this.state.pos),this.finishToken(B.template,r?null:e));if(92===n){e+=this.input.slice(t,this.state.pos);var i=this.readEscapedChar(!0);null===i?r=!0:e+=i,t=this.state.pos}else if(u(n)){switch(e+=this.input.slice(t,this.state.pos),++this.state.pos,n){case 13:10===this.input.charCodeAt(this.state.pos)&&++this.state.pos;case 10:e+="\n";break;default:e+=String.fromCharCode(n)}++this.state.curLine,this.state.lineStart=this.state.pos,t=this.state.pos}else++this.state.pos}},e.prototype.readEscapedChar=function(e){var t=!e,r=this.input.charCodeAt(++this.state.pos);switch(++this.state.pos,r){case 110:return"\n";case 114:return"\r";case 120:var n=this.readHexChar(2,t);return null===n?null:String.fromCharCode(n);case 117:var i=this.readCodePoint(t);return null===i?null:c(i);case 116:return"\t";case 98:return"\b";case 118:return"\v";case 102:return"\f";case 13:10===this.input.charCodeAt(this.state.pos)&&++this.state.pos;case 10:return this.state.lineStart=this.state.pos,++this.state.curLine,"";default:if(r>=48&&r<=55){var s=this.state.pos-1,a=this.input.substr(this.state.pos-1,3).match(/^[0-7]+/)[0],o=parseInt(a,8);if(o>255&&(a=a.slice(0,-1),o=parseInt(a,8)),o>0){if(e)return this.state.invalidTemplateEscapePosition=s,null;this.state.strict?this.raise(s,"Octal literal in strict mode"):this.state.containsOctal||(this.state.containsOctal=!0,this.state.octalPosition=s)}return this.state.pos+=a.length-1,String.fromCharCode(o)}return String.fromCharCode(r)}},e.prototype.readHexChar=function(e,t){var r=this.state.pos,n=this.readInt(16,e);return null===n&&(t?this.raise(r,"Bad character escape sequence"):(this.state.pos=r-1,this.state.invalidTemplateEscapePosition=r-1)),n},e.prototype.readWord1=function(){this.state.containsEsc=!1;for(var e="",t=!0,r=this.state.pos;this.state.pos1&&void 0!==arguments[1]?arguments[1]:"Unexpected token";t&&"object"===(void 0===t?"undefined":C(t))&&t.label&&(t="Unexpected token, expected "+t.label),this.raise(null!=e?e:this.state.start,t)};var K=W.prototype;K.parseTopLevel=function(e,t){return t.sourceType=this.options.sourceType,this.parseBlockBody(t,!0,!0,B.eof),e.program=this.finishNode(t,"Program"),e.comments=this.state.comments,e.tokens=this.state.tokens,this.finishNode(e,"File")};var z={kind:"loop"},Y={kind:"switch"};K.stmtToDirective=function(e){var t=e.expression,r=this.startNodeAt(t.start,t.loc.start),n=this.startNodeAt(e.start,e.loc.start),i=this.input.slice(t.start,t.end),s=r.value=i.slice(1,-1);return this.addExtra(r,"raw",i),this.addExtra(r,"rawValue",s),n.value=this.finishNodeAt(r,"DirectiveLiteral",t.end,t.loc.end),this.finishNodeAt(n,"Directive",e.end,e.loc.end)},K.parseStatement=function(e,t){this.match(B.at)&&this.parseDecorators(!0);var r=this.state.type,n=this.startNode();switch(r){case B._break:case B._continue:return this.parseBreakContinueStatement(n,r.keyword);case B._debugger:return this.parseDebuggerStatement(n);case B._do:return this.parseDoStatement(n);case B._for:return this.parseForStatement(n);case B._function:return e||this.unexpected(),this.parseFunctionStatement(n);case B._class:return e||this.unexpected(),this.parseClass(n,!0);case B._if:return this.parseIfStatement(n);case B._return:return this.parseReturnStatement(n);case B._switch:return this.parseSwitchStatement(n);case B._throw:return this.parseThrowStatement(n);case B._try:return this.parseTryStatement(n);case B._let:case B._const:e||this.unexpected();case B._var:return this.parseVarStatement(n,r);case B._while:return this.parseWhileStatement(n);case B._with:return this.parseWithStatement(n);case B.braceL:return this.parseBlock();case B.semi:return this.parseEmptyStatement(n);case B._export:case B._import:if(this.hasPlugin("dynamicImport")&&this.lookahead().type===B.parenL)break;return this.options.allowImportExportEverywhere||(t||this.raise(this.state.start,"'import' and 'export' may only appear at the top level"),this.inModule||this.raise(this.state.start,"'import' and 'export' may appear only with 'sourceType: \"module\"'")),r===B._import?this.parseImport(n):this.parseExport(n);case B.name:if("async"===this.state.value){var i=this.state.clone();if(this.next(),this.match(B._function)&&!this.canInsertSemicolon())return this.expect(B._function),this.parseFunction(n,!0,!1,!0);this.state=i}}var s=this.state.value,a=this.parseExpression();return r===B.name&&"Identifier"===a.type&&this.eat(B.colon)?this.parseLabeledStatement(n,s,a):this.parseExpressionStatement(n,a)},K.takeDecorators=function(e){this.state.decorators.length&&(e.decorators=this.state.decorators,this.state.decorators=[])},K.parseDecorators=function(e){for(;this.match(B.at);){var t=this.parseDecorator();this.state.decorators.push(t)}e&&this.match(B._export)||this.match(B._class)||this.raise(this.state.start,"Leading decorators must be attached to a class declaration")},K.parseDecorator=function(){this.hasPlugin("decorators")||this.unexpected();var e=this.startNode();return this.next(),e.expression=this.parseMaybeAssign(),this.finishNode(e,"Decorator")},K.parseBreakContinueStatement=function(e,t){var r="break"===t;this.next(),this.isLineTerminator()?e.label=null:this.match(B.name)?(e.label=this.parseIdentifier(),this.semicolon()):this.unexpected();var n=void 0;for(n=0;n=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}a.name===t&&this.raise(r.start,"Label '"+t+"' is already declared")}for(var o=this.state.type.isLoop?"loop":this.match(B._switch)?"switch":null,u=this.state.labels.length-1;u>=0;u--){var l=this.state.labels[u];if(l.statementStart!==e.start)break;l.statementStart=this.state.start,l.kind=o}return this.state.labels.push({name:t,kind:o,statementStart:this.state.start}),e.body=this.parseStatement(!0),this.state.labels.pop(),e.label=r,this.finishNode(e,"LabeledStatement")},K.parseExpressionStatement=function(e,t){return e.expression=t,this.semicolon(),this.finishNode(e,"ExpressionStatement")},K.parseBlock=function(e){var t=this.startNode();return this.expect(B.braceL),this.parseBlockBody(t,e,!1,B.braceR),this.finishNode(t,"BlockStatement")},K.isValidDirective=function(e){return"ExpressionStatement"===e.type&&"StringLiteral"===e.expression.type&&!e.expression.extra.parenthesized},K.parseBlockBody=function(e,t,r,n){e.body=[],e.directives=[];for(var i=!1,s=void 0,a=void 0;!this.eat(n);){i||!this.state.containsOctal||a||(a=this.state.octalPosition);var o=this.parseStatement(!0,r);if(t&&!i&&this.isValidDirective(o)){var u=this.stmtToDirective(o);e.directives.push(u),void 0===s&&"use strict"===u.value.value&&(s=this.state.strict,this.setStrict(!0),a&&this.raise(a,"Octal literal in strict mode"))}else i=!0,e.body.push(o)}!1===s&&this.setStrict(!1)},K.parseFor=function(e,t){return e.init=t,this.expect(B.semi),e.test=this.match(B.semi)?null:this.parseExpression(),this.expect(B.semi),e.update=this.match(B.parenR)?null:this.parseExpression(),this.expect(B.parenR),e.body=this.parseStatement(!1),this.state.labels.pop(),this.finishNode(e,"ForStatement")},K.parseForIn=function(e,t,r){var n=void 0;return r?(this.eatContextual("of"),n="ForAwaitStatement"):(n=this.match(B._in)?"ForInStatement":"ForOfStatement",this.next()),e.left=t,e.right=this.parseExpression(),this.expect(B.parenR),e.body=this.parseStatement(!1),this.state.labels.pop(),this.finishNode(e,n)},K.parseVar=function(e,t,r){for(e.declarations=[],e.kind=r.keyword;;){var n=this.startNode();if(this.parseVarHead(n),this.eat(B.eq)?n.init=this.parseMaybeAssign(t):r!==B._const||this.match(B._in)||this.isContextual("of")?"Identifier"===n.id.type||t&&(this.match(B._in)||this.isContextual("of"))?n.init=null:this.raise(this.state.lastTokEnd,"Complex binding patterns require an initialization value"):this.unexpected(),e.declarations.push(this.finishNode(n,"VariableDeclarator")),!this.eat(B.comma))break}return e},K.parseVarHead=function(e){e.id=this.parseBindingAtom(),this.checkLVal(e.id,!0,void 0,"variable declaration")},K.parseFunction=function(e,t,r,n,i){var s=this.state.inMethod;return this.state.inMethod=!1,this.initFunction(e,n),this.match(B.star)&&(e.async&&!this.hasPlugin("asyncGenerators")?this.unexpected():(e.generator=!0,this.next())),!t||i||this.match(B.name)||this.match(B._yield)||this.unexpected(),(this.match(B.name)||this.match(B._yield))&&(e.id=this.parseBindingIdentifier()),this.parseFunctionParams(e),this.parseFunctionBody(e,r),this.state.inMethod=s,this.finishNode(e,t?"FunctionDeclaration":"FunctionExpression")},K.parseFunctionParams=function(e){this.expect(B.parenL),e.params=this.parseBindingList(B.parenR)},K.parseClass=function(e,t,r){return this.next(),this.takeDecorators(e),this.parseClassId(e,t,r),this.parseClassSuper(e),this.parseClassBody(e),this.finishNode(e,t?"ClassDeclaration":"ClassExpression")},K.isClassProperty=function(){return this.match(B.eq)||this.match(B.semi)||this.match(B.braceR)},K.isClassMethod=function(){return this.match(B.parenL)},K.isNonstaticConstructor=function(e){return!(e.computed||e.static||"constructor"!==e.key.name&&"constructor"!==e.key.value)},K.parseClassBody=function(e){var t=this.state.strict;this.state.strict=!0;var r=!1,n=!1,i=[],s=this.startNode();for(s.body=[],this.expect(B.braceL);!this.eat(B.braceR);)if(this.eat(B.semi))i.length>0&&this.raise(this.state.lastTokEnd,"Decorators must not be followed by a semicolon");else if(this.match(B.at))i.push(this.parseDecorator());else{var a=this.startNode();if(i.length&&(a.decorators=i,i=[]),a.static=!1,this.match(B.name)&&"static"===this.state.value){var o=this.parseIdentifier(!0);if(this.isClassMethod()){a.kind="method",a.computed=!1,a.key=o,this.parseClassMethod(s,a,!1,!1);continue}if(this.isClassProperty()){a.computed=!1,a.key=o,s.body.push(this.parseClassProperty(a));continue}a.static=!0}if(this.eat(B.star))a.kind="method",this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't be a generator"),a.computed||!a.static||"prototype"!==a.key.name&&"prototype"!==a.key.value||this.raise(a.key.start,"Classes may not have static property named prototype"),this.parseClassMethod(s,a,!0,!1);else{var u=this.match(B.name),l=this.parsePropertyName(a);if(a.computed||!a.static||"prototype"!==a.key.name&&"prototype"!==a.key.value||this.raise(a.key.start,"Classes may not have static property named prototype"),this.isClassMethod())this.isNonstaticConstructor(a)?(n?this.raise(l.start,"Duplicate constructor in the same class"):a.decorators&&this.raise(a.start,"You can't attach decorators to a class constructor"),n=!0,a.kind="constructor"):a.kind="method",this.parseClassMethod(s,a,!1,!1);else if(this.isClassProperty())this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Classes may not have a non-static field named 'constructor'"),s.body.push(this.parseClassProperty(a));else if(u&&"async"===l.name&&!this.isLineTerminator()){var c=this.hasPlugin("asyncGenerators")&&this.eat(B.star);a.kind="method",this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't be an async function"),this.parseClassMethod(s,a,c,!0)}else!u||"get"!==l.name&&"set"!==l.name||this.isLineTerminator()&&this.match(B.star)?this.hasPlugin("classConstructorCall")&&u&&"call"===l.name&&this.match(B.name)&&"constructor"===this.state.value?(r?this.raise(a.start,"Duplicate constructor call in the same class"):a.decorators&&this.raise(a.start,"You can't attach decorators to a class constructor"),r=!0,a.kind="constructorCall",this.parsePropertyName(a),this.parseClassMethod(s,a,!1,!1)):this.isLineTerminator()?(this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Classes may not have a non-static field named 'constructor'"),s.body.push(this.parseClassProperty(a))):this.unexpected():(a.kind=l.name,this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't have get/set modifier"),this.parseClassMethod(s,a,!1,!1),this.checkGetterSetterParamCount(a))}}i.length&&this.raise(this.state.start,"You have trailing decorators with no method"),e.body=this.finishNode(s,"ClassBody"),this.state.strict=t},K.parseClassProperty=function(e){return this.state.inClassProperty=!0,this.match(B.eq)?(this.hasPlugin("classProperties")||this.unexpected(),this.next(),e.value=this.parseMaybeAssign()):e.value=null,this.semicolon(),this.state.inClassProperty=!1,this.finishNode(e,"ClassProperty")},K.parseClassMethod=function(e,t,r,n){this.parseMethod(t,r,n),e.body.push(this.finishNode(t,"ClassMethod"))},K.parseClassId=function(e,t,r){this.match(B.name)?e.id=this.parseIdentifier():r||!t?e.id=null:this.unexpected()},K.parseClassSuper=function(e){e.superClass=this.eat(B._extends)?this.parseExprSubscripts():null},K.parseExport=function(e){if(this.next(),this.match(B.star)){var t=this.startNode();if(this.next(),!this.hasPlugin("exportExtensions")||!this.eatContextual("as"))return this.parseExportFrom(e,!0),this.finishNode(e,"ExportAllDeclaration");t.exported=this.parseIdentifier(),e.specifiers=[this.finishNode(t,"ExportNamespaceSpecifier")],this.parseExportSpecifiersMaybe(e),this.parseExportFrom(e,!0)}else if(this.hasPlugin("exportExtensions")&&this.isExportDefaultSpecifier()){var r=this.startNode();if(r.exported=this.parseIdentifier(!0),e.specifiers=[this.finishNode(r,"ExportDefaultSpecifier")],this.match(B.comma)&&this.lookahead().type===B.star){this.expect(B.comma);var n=this.startNode();this.expect(B.star),this.expectContextual("as"),n.exported=this.parseIdentifier(),e.specifiers.push(this.finishNode(n,"ExportNamespaceSpecifier"))}else this.parseExportSpecifiersMaybe(e);this.parseExportFrom(e,!0)}else{if(this.eat(B._default)){var i=this.startNode(),s=!1;return this.eat(B._function)?i=this.parseFunction(i,!0,!1,!1,!0):this.match(B._class)?i=this.parseClass(i,!0,!0):(s=!0,i=this.parseMaybeAssign()),e.declaration=i,s&&this.semicolon(),this.checkExport(e,!0,!0),this.finishNode(e,"ExportDefaultDeclaration")}this.shouldParseExportDeclaration()?(e.specifiers=[],e.source=null,e.declaration=this.parseExportDeclaration(e)):(e.declaration=null,e.specifiers=this.parseExportSpecifiers(),this.parseExportFrom(e))}return this.checkExport(e,!0),this.finishNode(e,"ExportNamedDeclaration")},K.parseExportDeclaration=function(){return this.parseStatement(!0)},K.isExportDefaultSpecifier=function(){if(this.match(B.name))return"async"!==this.state.value;if(!this.match(B._default))return!1;var e=this.lookahead();return e.type===B.comma||e.type===B.name&&"from"===e.value},K.parseExportSpecifiersMaybe=function(e){this.eat(B.comma)&&(e.specifiers=e.specifiers.concat(this.parseExportSpecifiers()))},K.parseExportFrom=function(e,t){this.eatContextual("from")?(e.source=this.match(B.string)?this.parseExprAtom():this.unexpected(),this.checkExport(e)):t?this.unexpected():e.source=null,this.semicolon()},K.shouldParseExportDeclaration=function(){return"var"===this.state.type.keyword||"const"===this.state.type.keyword||"let"===this.state.type.keyword||"function"===this.state.type.keyword||"class"===this.state.type.keyword||this.isContextual("async")},K.checkExport=function(e,t,r){if(t)if(r)this.checkDuplicateExports(e,"default");else if(e.specifiers&&e.specifiers.length)for(var n=e.specifiers,i=Array.isArray(n),s=0,n=i?n:n[Symbol.iterator]();;){var a;if(i){if(s>=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}var o=a;this.checkDuplicateExports(o,o.exported.name)}else if(e.declaration)if("FunctionDeclaration"===e.declaration.type||"ClassDeclaration"===e.declaration.type)this.checkDuplicateExports(e,e.declaration.id.name);else if("VariableDeclaration"===e.declaration.type)for(var u=e.declaration.declarations,l=Array.isArray(u),c=0,u=l?u:u[Symbol.iterator]();;){var p;if(l){if(c>=u.length)break;p=u[c++]}else{if((c=u.next()).done)break;p=c.value}var h=p;this.checkDeclaration(h.id)}if(this.state.decorators.length){var f=e.declaration&&("ClassDeclaration"===e.declaration.type||"ClassExpression"===e.declaration.type);e.declaration&&f||this.raise(e.start,"You can only use decorators on an export when exporting a class"),this.takeDecorators(e.declaration)}},K.checkDeclaration=function(e){if("ObjectPattern"===e.type)for(var t=e.properties,r=Array.isArray(t),n=0,t=r?t:t[Symbol.iterator]();;){var i;if(r){if(n>=t.length)break;i=t[n++]}else{if((n=t.next()).done)break;i=n.value}var s=i;this.checkDeclaration(s)}else if("ArrayPattern"===e.type)for(var a=e.elements,o=Array.isArray(a),u=0,a=o?a:a[Symbol.iterator]();;){var l;if(o){if(u>=a.length)break;l=a[u++]}else{if((u=a.next()).done)break;l=u.value}var c=l;c&&this.checkDeclaration(c)}else"ObjectProperty"===e.type?this.checkDeclaration(e.value):"RestElement"===e.type||"RestProperty"===e.type?this.checkDeclaration(e.argument):"Identifier"===e.type&&this.checkDuplicateExports(e,e.name)},K.checkDuplicateExports=function(e,t){this.state.exportedIdentifiers.indexOf(t)>-1&&this.raiseDuplicateExportError(e,t),this.state.exportedIdentifiers.push(t)},K.raiseDuplicateExportError=function(e,t){this.raise(e.start,"default"===t?"Only one default export allowed per module.":"`"+t+"` has already been exported. 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a;if(i){if(s>=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}var o=a;"ObjectMethod"===o.type?"get"===o.kind||"set"===o.kind?this.raise(o.key.start,"Object pattern can't contain getter or setter"):this.raise(o.key.start,"Object pattern can't contain methods"):this.toAssignable(o,t,"object destructuring pattern")}break;case"ObjectProperty":this.toAssignable(e.value,t,r);break;case"SpreadProperty":e.type="RestProperty";var u=e.argument;this.toAssignable(u,t,r);break;case"ArrayExpression":e.type="ArrayPattern",this.toAssignableList(e.elements,t,r);break;case"AssignmentExpression":"="===e.operator?(e.type="AssignmentPattern",delete e.operator):this.raise(e.left.end,"Only '=' operator can be used for specifying default value.");break;case"MemberExpression":if(!t)break;default:var l="Invalid left-hand side"+(r?" in "+r:"expression");this.raise(e.start,l)}return e},$.toAssignableList=function(e,t,r){var n=e.length;if(n){var i=e[n-1];if(i&&"RestElement"===i.type)--n;else if(i&&"SpreadElement"===i.type){i.type="RestElement";var s=i.argument;this.toAssignable(s,t,r),"Identifier"!==s.type&&"MemberExpression"!==s.type&&"ArrayPattern"!==s.type&&this.unexpected(s.start),--n}}for(var a=0;a=s.length)break;u=s[o++]}else{if((o=s.next()).done)break;u=o.value}var l=u;"ObjectProperty"===l.type&&(l=l.value),this.checkLVal(l,t,r,"object destructuring pattern")}break;case"ArrayPattern":for(var c=e.elements,p=Array.isArray(c),h=0,c=p?c:c[Symbol.iterator]();;){var f;if(p){if(h>=c.length)break;f=c[h++]}else{if((h=c.next()).done)break;f=h.value}var d=f;d&&this.checkLVal(d,t,r,"array destructuring pattern")}break;case"AssignmentPattern":this.checkLVal(e.left,t,r,"assignment pattern");break;case"RestProperty":this.checkLVal(e.argument,t,r,"rest property");break;case"RestElement":this.checkLVal(e.argument,t,r,"rest element");break;default:var m=(t?"Binding invalid":"Invalid")+" left-hand side"+(n?" in "+n:"expression");this.raise(e.start,m)}};var Q=W.prototype;Q.checkPropClash=function(e,t){if(!e.computed&&!e.kind){var r=e.key;"__proto__"===("Identifier"===r.type?r.name:String(r.value))&&(t.proto&&this.raise(r.start,"Redefinition of __proto__ property"),t.proto=!0)}},Q.getExpression=function(){this.nextToken();var e=this.parseExpression();return this.match(B.eof)||this.unexpected(),e},Q.parseExpression=function(e,t){var r=this.state.start,n=this.state.startLoc,i=this.parseMaybeAssign(e,t);if(this.match(B.comma)){var s=this.startNodeAt(r,n);for(s.expressions=[i];this.eat(B.comma);)s.expressions.push(this.parseMaybeAssign(e,t));return this.toReferencedList(s.expressions),this.finishNode(s,"SequenceExpression")}return i},Q.parseMaybeAssign=function(e,t,r,n){var i=this.state.start,s=this.state.startLoc;if(this.match(B._yield)&&this.state.inGenerator){var a=this.parseYield();return r&&(a=r.call(this,a,i,s)),a}var o=void 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t&&t.start?s:this.parseConditional(s,e,n,i,r)},Q.parseConditional=function(e,t,r,n){if(this.eat(B.question)){var i=this.startNodeAt(r,n);return i.test=e,i.consequent=this.parseMaybeAssign(),this.expect(B.colon),i.alternate=this.parseMaybeAssign(t),this.finishNode(i,"ConditionalExpression")}return e},Q.parseExprOps=function(e,t){var r=this.state.start,n=this.state.startLoc,i=this.parseMaybeUnary(t);return t&&t.start?i:this.parseExprOp(i,r,n,-1,e)},Q.parseExprOp=function(e,t,r,n,i){var s=this.state.type.binop;if(!(null==s||i&&this.match(B._in))&&s>n){var a=this.startNodeAt(t,r);a.left=e,a.operator=this.state.value,"**"!==a.operator||"UnaryExpression"!==e.type||!e.extra||e.extra.parenthesizedArgument||e.extra.parenthesized||this.raise(e.argument.start,"Illegal expression. 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i=this.state.start,s=this.state.startLoc,a=this.parseExprSubscripts(e);if(e&&e.start)return a;for(;this.state.type.postfix&&!this.canInsertSemicolon();){var o=this.startNodeAt(i,s);o.operator=this.state.value,o.prefix=!1,o.argument=a,this.checkLVal(a,void 0,void 0,"postfix operation"),this.next(),a=this.finishNode(o,"UpdateExpression")}return a},Q.parseExprSubscripts=function(e){var t=this.state.start,r=this.state.startLoc,n=this.state.potentialArrowAt,i=this.parseExprAtom(e);return"ArrowFunctionExpression"===i.type&&i.start===n?i:e&&e.start?i:this.parseSubscripts(i,t,r)},Q.parseSubscripts=function(e,t,r,n){for(;;){if(!n&&this.eat(B.doubleColon)){var i=this.startNodeAt(t,r);return i.object=e,i.callee=this.parseNoCallExpr(),this.parseSubscripts(this.finishNode(i,"BindExpression"),t,r,n)}if(this.eat(B.dot)){var s=this.startNodeAt(t,r);s.object=e,s.property=this.parseIdentifier(!0),s.computed=!1,e=this.finishNode(s,"MemberExpression")}else if(this.eat(B.bracketL)){var a=this.startNodeAt(t,r);a.object=e,a.property=this.parseExpression(),a.computed=!0,this.expect(B.bracketR),e=this.finishNode(a,"MemberExpression")}else if(!n&&this.match(B.parenL)){var o=this.state.potentialArrowAt===e.start&&"Identifier"===e.type&&"async"===e.name&&!this.canInsertSemicolon();this.next();var u=this.startNodeAt(t,r);if(u.callee=e,u.arguments=this.parseCallExpressionArguments(B.parenR,o),"Import"===u.callee.type&&1!==u.arguments.length&&this.raise(u.start,"import() requires exactly one argument"),e=this.finishNode(u,"CallExpression"),o&&this.shouldParseAsyncArrow())return this.parseAsyncArrowFromCallExpression(this.startNodeAt(t,r),u);this.toReferencedList(u.arguments)}else{if(!this.match(B.backQuote))return e;var l=this.startNodeAt(t,r);l.tag=e,l.quasi=this.parseTemplate(!0),e=this.finishNode(l,"TaggedTemplateExpression")}}},Q.parseCallExpressionArguments=function(e,t){for(var r=[],n=void 0,i=!0;!this.eat(e);){if(i)i=!1;else if(this.expect(B.comma),this.eat(e))break;this.match(B.parenL)&&!n&&(n=this.state.start),r.push(this.parseExprListItem(!1,t?{start:0}:void 0,t?{start:0}:void 0))}return t&&n&&this.shouldParseAsyncArrow()&&this.unexpected(),r},Q.shouldParseAsyncArrow=function(){return this.match(B.arrow)},Q.parseAsyncArrowFromCallExpression=function(e,t){return this.expect(B.arrow),this.parseArrowExpression(e,t.arguments,!0)},Q.parseNoCallExpr=function(){var e=this.state.start,t=this.state.startLoc;return this.parseSubscripts(this.parseExprAtom(),e,t,!0)},Q.parseExprAtom=function(e){var t=this.state.potentialArrowAt===this.state.start,r=void 0;switch(this.state.type){case B._super:return this.state.inMethod||this.state.inClassProperty||this.options.allowSuperOutsideMethod||this.raise(this.state.start,"'super' outside of function or class"),r=this.startNode(),this.next(),this.match(B.parenL)||this.match(B.bracketL)||this.match(B.dot)||this.unexpected(),this.match(B.parenL)&&"constructor"!==this.state.inMethod&&!this.options.allowSuperOutsideMethod&&this.raise(r.start,"super() outside of class constructor"),this.finishNode(r,"Super");case B._import:return this.hasPlugin("dynamicImport")||this.unexpected(),r=this.startNode(),this.next(),this.match(B.parenL)||this.unexpected(null,B.parenL),this.finishNode(r,"Import");case B._this:return r=this.startNode(),this.next(),this.finishNode(r,"ThisExpression");case B._yield:this.state.inGenerator&&this.unexpected();case B.name:r=this.startNode();var n="await"===this.state.value&&this.state.inAsync,i=this.shouldAllowYieldIdentifier(),s=this.parseIdentifier(n||i);if("await"===s.name){if(this.state.inAsync||this.inModule)return this.parseAwait(r)}else{if("async"===s.name&&this.match(B._function)&&!this.canInsertSemicolon())return this.next(),this.parseFunction(r,!1,!1,!0);if(t&&"async"===s.name&&this.match(B.name)){var a=[this.parseIdentifier()];return this.expect(B.arrow),this.parseArrowExpression(r,a,!0)}}return t&&!this.canInsertSemicolon()&&this.eat(B.arrow)?this.parseArrowExpression(r,[s]):s;case B._do:if(this.hasPlugin("doExpressions")){var o=this.startNode();this.next();var u=this.state.inFunction,l=this.state.labels;return this.state.labels=[],this.state.inFunction=!1,o.body=this.parseBlock(!1,!0),this.state.inFunction=u,this.state.labels=l,this.finishNode(o,"DoExpression")}case B.regexp:var c=this.state.value;return r=this.parseLiteral(c.value,"RegExpLiteral"),r.pattern=c.pattern,r.flags=c.flags,r;case B.num:return this.parseLiteral(this.state.value,"NumericLiteral");case B.string:return this.parseLiteral(this.state.value,"StringLiteral");case B._null:return r=this.startNode(),this.next(),this.finishNode(r,"NullLiteral");case B._true:case B._false:return r=this.startNode(),r.value=this.match(B._true),this.next(),this.finishNode(r,"BooleanLiteral");case B.parenL:return this.parseParenAndDistinguishExpression(null,null,t);case B.bracketL:return r=this.startNode(),this.next(),r.elements=this.parseExprList(B.bracketR,!0,e),this.toReferencedList(r.elements),this.finishNode(r,"ArrayExpression");case B.braceL:return this.parseObj(!1,e);case B._function:return this.parseFunctionExpression();case B.at:this.parseDecorators();case B._class:return r=this.startNode(),this.takeDecorators(r),this.parseClass(r,!1);case B._new:return this.parseNew();case B.backQuote:return this.parseTemplate(!1);case B.doubleColon:r=this.startNode(),this.next(),r.object=null;var p=r.callee=this.parseNoCallExpr();if("MemberExpression"===p.type)return this.finishNode(r,"BindExpression");this.raise(p.start,"Binding should be performed on object property.");default:this.unexpected()}},Q.parseFunctionExpression=function(){var e=this.startNode(),t=this.parseIdentifier(!0);return this.state.inGenerator&&this.eat(B.dot)&&this.hasPlugin("functionSent")?this.parseMetaProperty(e,t,"sent"):this.parseFunction(e,!1)},Q.parseMetaProperty=function(e,t,r){return e.meta=t,e.property=this.parseIdentifier(!0),e.property.name!==r&&this.raise(e.property.start,"The only valid meta property for new is "+t.name+"."+r),this.finishNode(e,"MetaProperty")},Q.parseLiteral=function(e,t,r,n){r=r||this.state.start,n=n||this.state.startLoc;var i=this.startNodeAt(r,n);return this.addExtra(i,"rawValue",e),this.addExtra(i,"raw",this.input.slice(r,this.state.end)),i.value=e,this.next(),this.finishNode(i,t)},Q.parseParenExpression=function(){this.expect(B.parenL);var e=this.parseExpression();return this.expect(B.parenR),e},Q.parseParenAndDistinguishExpression=function(e,t,r){e=e||this.state.start,t=t||this.state.startLoc;var n=void 0;this.expect(B.parenL);for(var i=this.state.start,s=this.state.startLoc,a=[],o={start:0},u={start:0},l=!0,c=void 0,p=void 0;!this.match(B.parenR);){if(l)l=!1;else if(this.expect(B.comma,u.start||null),this.match(B.parenR)){p=this.state.start;break}if(this.match(B.ellipsis)){var h=this.state.start,f=this.state.startLoc;c=this.state.start,a.push(this.parseParenItem(this.parseRest(),h,f));break}a.push(this.parseMaybeAssign(!1,o,this.parseParenItem,u))}var d=this.state.start,m=this.state.startLoc;this.expect(B.parenR);var y=this.startNodeAt(e,t);if(r&&this.shouldParseArrow()&&(y=this.parseArrow(y))){for(var g=a,b=Array.isArray(g),v=0,g=b?g:g[Symbol.iterator]();;){var x;if(b){if(v>=g.length)break;x=g[v++]}else{if((v=g.next()).done)break;x=v.value}var E=x;E.extra&&E.extra.parenthesized&&this.unexpected(E.extra.parenStart)}return this.parseArrowExpression(y,a)}return a.length||this.unexpected(this.state.lastTokStart),p&&this.unexpected(p),c&&this.unexpected(c),o.start&&this.unexpected(o.start),u.start&&this.unexpected(u.start),a.length>1?((n=this.startNodeAt(i,s)).expressions=a,this.toReferencedList(n.expressions),this.finishNodeAt(n,"SequenceExpression",d,m)):n=a[0],this.addExtra(n,"parenthesized",!0),this.addExtra(n,"parenStart",e),n},Q.shouldParseArrow=function(){return!this.canInsertSemicolon()},Q.parseArrow=function(e){if(this.eat(B.arrow))return e},Q.parseParenItem=function(e){return e},Q.parseNew=function(){var e=this.startNode(),t=this.parseIdentifier(!0);if(this.eat(B.dot)){var r=this.parseMetaProperty(e,t,"target");return this.state.inFunction||this.raise(r.property.start,"new.target can only be used in functions"),r}return e.callee=this.parseNoCallExpr(),this.eat(B.parenL)?(e.arguments=this.parseExprList(B.parenR),this.toReferencedList(e.arguments)):e.arguments=[],this.finishNode(e,"NewExpression")},Q.parseTemplateElement=function(e){var t=this.startNode();return null===this.state.value&&(e&&this.hasPlugin("templateInvalidEscapes")?this.state.invalidTemplateEscapePosition=null:this.raise(this.state.invalidTemplateEscapePosition,"Invalid escape sequence in template")),t.value={raw:this.input.slice(this.state.start,this.state.end).replace(/\r\n?/g,"\n"),cooked:this.state.value},this.next(),t.tail=this.match(B.backQuote),this.finishNode(t,"TemplateElement")},Q.parseTemplate=function(e){var t=this.startNode();this.next(),t.expressions=[];var r=this.parseTemplateElement(e);for(t.quasis=[r];!r.tail;)this.expect(B.dollarBraceL),t.expressions.push(this.parseExpression()),this.expect(B.braceR),t.quasis.push(r=this.parseTemplateElement(e));return this.next(),this.finishNode(t,"TemplateLiteral")},Q.parseObj=function(e,t){var r=[],n=Object.create(null),i=!0,s=this.startNode();s.properties=[],this.next();for(var a=null;!this.eat(B.braceR);){if(i)i=!1;else if(this.expect(B.comma),this.eat(B.braceR))break;for(;this.match(B.at);)r.push(this.parseDecorator());var o=this.startNode(),u=!1,l=!1,c=void 0,p=void 0;if(r.length&&(o.decorators=r,r=[]),this.hasPlugin("objectRestSpread")&&this.match(B.ellipsis)){if(o=this.parseSpread(e?{start:0}:void 0),o.type=e?"RestProperty":"SpreadProperty",e&&this.toAssignable(o.argument,!0,"object pattern"),s.properties.push(o),!e)continue;var h=this.state.start;if(null===a){if(this.eat(B.braceR))break;if(this.match(B.comma)&&this.lookahead().type===B.braceR)continue;a=h;continue}this.unexpected(a,"Cannot have multiple rest elements when destructuring")}if(o.method=!1,o.shorthand=!1,(e||t)&&(c=this.state.start,p=this.state.startLoc),e||(u=this.eat(B.star)),!e&&this.isContextual("async")){u&&this.unexpected();var f=this.parseIdentifier();this.match(B.colon)||this.match(B.parenL)||this.match(B.braceR)||this.match(B.eq)||this.match(B.comma)?(o.key=f,o.computed=!1):(l=!0,this.hasPlugin("asyncGenerators")&&(u=this.eat(B.star)),this.parsePropertyName(o))}else this.parsePropertyName(o);this.parseObjPropValue(o,c,p,u,l,e,t),this.checkPropClash(o,n),o.shorthand&&this.addExtra(o,"shorthand",!0),s.properties.push(o)}return null!==a&&this.unexpected(a,"The rest element has to be the last element when destructuring"),r.length&&this.raise(this.state.start,"You have trailing decorators with no property"),this.finishNode(s,e?"ObjectPattern":"ObjectExpression")},Q.isGetterOrSetterMethod=function(e,t){return!t&&!e.computed&&"Identifier"===e.key.type&&("get"===e.key.name||"set"===e.key.name)&&(this.match(B.string)||this.match(B.num)||this.match(B.bracketL)||this.match(B.name)||this.state.type.keyword)},Q.checkGetterSetterParamCount=function(e){var t="get"===e.kind?0:1;if(e.params.length!==t){var r=e.start;"get"===e.kind?this.raise(r,"getter should have no params"):this.raise(r,"setter should have exactly one param")}},Q.parseObjectMethod=function(e,t,r,n){return r||t||this.match(B.parenL)?(n&&this.unexpected(),e.kind="method",e.method=!0,this.parseMethod(e,t,r),this.finishNode(e,"ObjectMethod")):this.isGetterOrSetterMethod(e,n)?((t||r)&&this.unexpected(),e.kind=e.key.name,this.parsePropertyName(e),this.parseMethod(e),this.checkGetterSetterParamCount(e),this.finishNode(e,"ObjectMethod")):void 0},Q.parseObjectProperty=function(e,t,r,n,i){return this.eat(B.colon)?(e.value=n?this.parseMaybeDefault(this.state.start,this.state.startLoc):this.parseMaybeAssign(!1,i),this.finishNode(e,"ObjectProperty")):e.computed||"Identifier"!==e.key.type?void 0:(this.checkReservedWord(e.key.name,e.key.start,!0,!0),n?e.value=this.parseMaybeDefault(t,r,e.key.__clone()):this.match(B.eq)&&i?(i.start||(i.start=this.state.start),e.value=this.parseMaybeDefault(t,r,e.key.__clone())):e.value=e.key.__clone(),e.shorthand=!0,this.finishNode(e,"ObjectProperty"))},Q.parseObjPropValue=function(e,t,r,n,i,s,a){var o=this.parseObjectMethod(e,n,i,s)||this.parseObjectProperty(e,t,r,s,a);return o||this.unexpected(),o},Q.parsePropertyName=function(e){if(this.eat(B.bracketL))e.computed=!0,e.key=this.parseMaybeAssign(),this.expect(B.bracketR);else{e.computed=!1;var t=this.state.inPropertyName;this.state.inPropertyName=!0,e.key=this.match(B.num)||this.match(B.string)?this.parseExprAtom():this.parseIdentifier(!0),this.state.inPropertyName=t}return e.key},Q.initFunction=function(e,t){e.id=null,e.generator=!1,e.expression=!1,e.async=!!t},Q.parseMethod=function(e,t,r){var n=this.state.inMethod;return this.state.inMethod=e.kind||!0,this.initFunction(e,r),this.expect(B.parenL),e.params=this.parseBindingList(B.parenR),e.generator=!!t,this.parseFunctionBody(e),this.state.inMethod=n,e},Q.parseArrowExpression=function(e,t,r){return this.initFunction(e,r),e.params=this.toAssignableList(t,!0,"arrow function parameters"),this.parseFunctionBody(e,!0),this.finishNode(e,"ArrowFunctionExpression")},Q.isStrictBody=function(e,t){if(!t&&e.body.directives.length)for(var r=e.body.directives,n=Array.isArray(r),i=0,r=n?r:r[Symbol.iterator]();;){var s;if(n){if(i>=r.length)break;s=r[i++]}else{if((i=r.next()).done)break;s=i.value}if("use strict"===s.value.value)return!0}return!1},Q.parseFunctionBody=function(e,t){var r=t&&!this.match(B.braceL),n=this.state.inAsync;if(this.state.inAsync=e.async,r)e.body=this.parseMaybeAssign(),e.expression=!0;else{var i=this.state.inFunction,s=this.state.inGenerator,a=this.state.labels;this.state.inFunction=!0,this.state.inGenerator=e.generator,this.state.labels=[],e.body=this.parseBlock(!0),e.expression=!1,this.state.inFunction=i,this.state.inGenerator=s,this.state.labels=a}this.state.inAsync=n;var o=this.isStrictBody(e,r),u=this.state.strict||t||o;if(o&&e.id&&"Identifier"===e.id.type&&"yield"===e.id.name&&this.raise(e.id.start,"Binding yield in strict mode"),u){var l=Object.create(null),c=this.state.strict;o&&(this.state.strict=!0),e.id&&this.checkLVal(e.id,!0,void 0,"function name");for(var p=e.params,h=Array.isArray(p),f=0,p=h?p:p[Symbol.iterator]();;){var d;if(h){if(f>=p.length)break;d=p[f++]}else{if((f=p.next()).done)break;d=f.value}var m=d;o&&"Identifier"!==m.type&&this.raise(m.start,"Non-simple parameter in strict mode"),this.checkLVal(m,!0,l,"function parameter list")}this.state.strict=c}},Q.parseExprList=function(e,t,r){for(var n=[],i=!0;!this.eat(e);){if(i)i=!1;else if(this.expect(B.comma),this.eat(e))break;n.push(this.parseExprListItem(t,r))}return n},Q.parseExprListItem=function(e,t,r){return e&&this.match(B.comma)?null:this.match(B.ellipsis)?this.parseSpread(t):this.parseMaybeAssign(!1,t,this.parseParenItem,r)},Q.parseIdentifier=function(e){var t=this.startNode();return e||this.checkReservedWord(this.state.value,this.state.start,!!this.state.type.keyword,!1),this.match(B.name)?t.name=this.state.value:this.state.type.keyword?t.name=this.state.type.keyword:this.unexpected(),!e&&"await"===t.name&&this.state.inAsync&&this.raise(t.start,"invalid use of await inside of an async function"),t.loc.identifierName=t.name,this.next(),this.finishNode(t,"Identifier")},Q.checkReservedWord=function(e,t,r,n){(this.isReservedWord(e)||r&&this.isKeyword(e))&&this.raise(t,e+" is a reserved word"),this.state.strict&&(m.strict(e)||n&&m.strictBind(e))&&this.raise(t,e+" is a reserved word in strict mode")},Q.parseAwait=function(e){return this.state.inAsync||this.unexpected(),this.match(B.star)&&this.raise(e.start,"await* has been removed from the async functions proposal. Use Promise.all() instead."),e.argument=this.parseMaybeUnary(),this.finishNode(e,"AwaitExpression")},Q.parseYield=function(){var e=this.startNode();return this.next(),this.match(B.semi)||this.canInsertSemicolon()||!this.match(B.star)&&!this.state.type.startsExpr?(e.delegate=!1,e.argument=null):(e.delegate=this.eat(B.star),e.argument=this.parseMaybeAssign()),this.finishNode(e,"YieldExpression")};var Z=W.prototype,ee=["leadingComments","trailingComments","innerComments"],te=function(){function e(t,r,n){S(this,e),this.type="",this.start=t,this.end=0,this.loc=new V(r),n&&(this.loc.filename=n)}return e.prototype.__clone=function(){var t=new e;for(var r in this)ee.indexOf(r)<0&&(t[r]=this[r]);return t},e}();Z.startNode=function(){return new te(this.state.start,this.state.startLoc,this.filename)},Z.startNodeAt=function(e,t){return new te(e,t,this.filename)},Z.finishNode=function(e,t){return p.call(this,e,t,this.state.lastTokEnd,this.state.lastTokEndLoc)},Z.finishNodeAt=function(e,t,r,n){return p.call(this,e,t,r,n)},W.prototype.raise=function(e,t){var r=l(this.input,e);t+=" ("+r.line+":"+r.column+")";var n=new SyntaxError(t);throw n.pos=e,n.loc=r,n};var re=W.prototype;re.addComment=function(e){this.filename&&(e.loc.filename=this.filename),this.state.trailingComments.push(e),this.state.leadingComments.push(e)},re.processComment=function(e){if(!("Program"===e.type&&e.body.length>0)){var t=this.state.commentStack,r=void 0,n=void 0,i=void 0,s=void 0,a=void 0;if(this.state.trailingComments.length>0)this.state.trailingComments[0].start>=e.end?(i=this.state.trailingComments,this.state.trailingComments=[]):this.state.trailingComments.length=0;else{var o=h(t);t.length>0&&o.trailingComments&&o.trailingComments[0].start>=e.end&&(i=o.trailingComments,o.trailingComments=null)}for(t.length>0&&h(t).start>=e.start&&(r=t.pop());t.length>0&&h(t).start>=e.start;)n=t.pop();if(!n&&r&&(n=r),r&&this.state.leadingComments.length>0){var u=h(this.state.leadingComments);if("ObjectProperty"===r.type){if(u.start>=e.start&&this.state.commentPreviousNode){for(a=0;a0&&(r.trailingComments=this.state.leadingComments,this.state.leadingComments=[])}}else if("CallExpression"===e.type&&e.arguments&&e.arguments.length){var l=h(e.arguments);l&&u.start>=l.start&&u.end<=e.end&&this.state.commentPreviousNode&&this.state.leadingComments.length>0&&(l.trailingComments=this.state.leadingComments,this.state.leadingComments=[])}}if(n){if(n.leadingComments)if(n!==e&&h(n.leadingComments).end<=e.start)e.leadingComments=n.leadingComments,n.leadingComments=null;else for(s=n.leadingComments.length-2;s>=0;--s)if(n.leadingComments[s].end<=e.start){e.leadingComments=n.leadingComments.splice(0,s+1);break}}else if(this.state.leadingComments.length>0)if(h(this.state.leadingComments).end<=e.start){if(this.state.commentPreviousNode)for(a=0;a0&&(e.leadingComments=this.state.leadingComments,this.state.leadingComments=[])}else{for(s=0;se.start);s++);e.leadingComments=this.state.leadingComments.slice(0,s),0===e.leadingComments.length&&(e.leadingComments=null),0===(i=this.state.leadingComments.slice(s)).length&&(i=null)}this.state.commentPreviousNode=e,i&&(i.length&&i[0].start>=e.start&&h(i).end<=e.end?e.innerComments=i:e.trailingComments=i),t.push(e)}};var ne=W.prototype;ne.estreeParseRegExpLiteral=function(e){var t=e.pattern,r=e.flags,n=null;try{n=new RegExp(t,r)}catch(e){}var i=this.estreeParseLiteral(n);return i.regex={pattern:t,flags:r},i},ne.estreeParseLiteral=function(e){return this.parseLiteral(e,"Literal")},ne.directiveToStmt=function(e){var t=e.value,r=this.startNodeAt(e.start,e.loc.start),n=this.startNodeAt(t.start,t.loc.start);return n.value=t.value,n.raw=t.extra.raw,r.expression=this.finishNodeAt(n,"Literal",t.end,t.loc.end),r.directive=t.extra.raw.slice(1,-1),this.finishNodeAt(r,"ExpressionStatement",e.end,e.loc.end)};var ie=["any","mixed","empty","bool","boolean","number","string","void","null"],se=W.prototype;se.flowParseTypeInitialiser=function(e){var t=this.state.inType;this.state.inType=!0,this.expect(e||B.colon);var r=this.flowParseType();return this.state.inType=t,r},se.flowParsePredicate=function(){var e=this.startNode(),t=this.state.startLoc,r=this.state.start;this.expect(B.modulo);var n=this.state.startLoc;return this.expectContextual("checks"),t.line===n.line&&t.column===n.column-1||this.raise(r,"Spaces between ´%´ and ´checks´ are not allowed here."),this.eat(B.parenL)?(e.expression=this.parseExpression(),this.expect(B.parenR),this.finishNode(e,"DeclaredPredicate")):this.finishNode(e,"InferredPredicate")},se.flowParseTypeAndPredicateInitialiser=function(){var e=this.state.inType;this.state.inType=!0,this.expect(B.colon);var t=null,r=null;return this.match(B.modulo)?(this.state.inType=e,r=this.flowParsePredicate()):(t=this.flowParseType(),this.state.inType=e,this.match(B.modulo)&&(r=this.flowParsePredicate())),[t,r]},se.flowParseDeclareClass=function(e){return this.next(),this.flowParseInterfaceish(e,!0),this.finishNode(e,"DeclareClass")},se.flowParseDeclareFunction=function(e){this.next();var t=e.id=this.parseIdentifier(),r=this.startNode(),n=this.startNode();this.isRelational("<")?r.typeParameters=this.flowParseTypeParameterDeclaration():r.typeParameters=null,this.expect(B.parenL);var i=this.flowParseFunctionTypeParams();r.params=i.params,r.rest=i.rest,this.expect(B.parenR);var s=null,a=this.flowParseTypeAndPredicateInitialiser();return r.returnType=a[0],s=a[1],n.typeAnnotation=this.finishNode(r,"FunctionTypeAnnotation"),n.predicate=s,t.typeAnnotation=this.finishNode(n,"TypeAnnotation"),this.finishNode(t,t.type),this.semicolon(),this.finishNode(e,"DeclareFunction")},se.flowParseDeclare=function(e){return this.match(B._class)?this.flowParseDeclareClass(e):this.match(B._function)?this.flowParseDeclareFunction(e):this.match(B._var)?this.flowParseDeclareVariable(e):this.isContextual("module")?this.lookahead().type===B.dot?this.flowParseDeclareModuleExports(e):this.flowParseDeclareModule(e):this.isContextual("type")?this.flowParseDeclareTypeAlias(e):this.isContextual("opaque")?this.flowParseDeclareOpaqueType(e):this.isContextual("interface")?this.flowParseDeclareInterface(e):this.match(B._export)?this.flowParseDeclareExportDeclaration(e):void this.unexpected()},se.flowParseDeclareExportDeclaration=function(e){if(this.expect(B._export),this.isContextual("opaque"))return e.declaration=this.flowParseDeclare(this.startNode()),e.default=!1,this.finishNode(e,"DeclareExportDeclaration");throw this.unexpected()},se.flowParseDeclareVariable=function(e){return this.next(),e.id=this.flowParseTypeAnnotatableIdentifier(),this.semicolon(),this.finishNode(e,"DeclareVariable")},se.flowParseDeclareModule=function(e){this.next(),this.match(B.string)?e.id=this.parseExprAtom():e.id=this.parseIdentifier();var t=e.body=this.startNode(),r=t.body=[];for(this.expect(B.braceL);!this.match(B.braceR);){var n=this.startNode();if(this.match(B._import)){var i=this.lookahead();"type"!==i.value&&"typeof"!==i.value&&this.unexpected(null,"Imports within a `declare module` body must always be `import type` or `import typeof`"),this.parseImport(n)}else this.expectContextual("declare","Only declares and type imports are allowed inside declare module"),n=this.flowParseDeclare(n,!0);r.push(n)}return this.expect(B.braceR),this.finishNode(t,"BlockStatement"),this.finishNode(e,"DeclareModule")},se.flowParseDeclareModuleExports=function(e){return this.expectContextual("module"),this.expect(B.dot),this.expectContextual("exports"),e.typeAnnotation=this.flowParseTypeAnnotation(),this.semicolon(),this.finishNode(e,"DeclareModuleExports")},se.flowParseDeclareTypeAlias=function(e){return this.next(),this.flowParseTypeAlias(e),this.finishNode(e,"DeclareTypeAlias")},se.flowParseDeclareOpaqueType=function(e){return this.next(),this.flowParseOpaqueType(e,!0),this.finishNode(e,"DeclareOpaqueType")},se.flowParseDeclareInterface=function(e){return this.next(),this.flowParseInterfaceish(e),this.finishNode(e,"DeclareInterface")},se.flowParseInterfaceish=function(e){if(e.id=this.parseIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.extends=[],e.mixins=[],this.eat(B._extends))do{e.extends.push(this.flowParseInterfaceExtends())}while(this.eat(B.comma));if(this.isContextual("mixins")){this.next();do{e.mixins.push(this.flowParseInterfaceExtends())}while(this.eat(B.comma))}e.body=this.flowParseObjectType(!0,!1,!1)},se.flowParseInterfaceExtends=function(){var e=this.startNode();return e.id=this.flowParseQualifiedTypeIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterInstantiation():e.typeParameters=null,this.finishNode(e,"InterfaceExtends")},se.flowParseInterface=function(e){return this.flowParseInterfaceish(e,!1),this.finishNode(e,"InterfaceDeclaration")},se.flowParseRestrictedIdentifier=function(e){return ie.indexOf(this.state.value)>-1&&this.raise(this.state.start,"Cannot overwrite primitive type "+this.state.value),this.parseIdentifier(e)},se.flowParseTypeAlias=function(e){return e.id=this.flowParseRestrictedIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.right=this.flowParseTypeInitialiser(B.eq),this.semicolon(),this.finishNode(e,"TypeAlias")},se.flowParseOpaqueType=function(e,t){return this.expectContextual("type"),e.id=this.flowParseRestrictedIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.supertype=null,this.match(B.colon)&&(e.supertype=this.flowParseTypeInitialiser(B.colon)),e.impltype=null,t||(e.impltype=this.flowParseTypeInitialiser(B.eq)),this.semicolon(),this.finishNode(e,"OpaqueType")},se.flowParseTypeParameter=function(){var e=this.startNode(),t=this.flowParseVariance(),r=this.flowParseTypeAnnotatableIdentifier();return e.name=r.name,e.variance=t,e.bound=r.typeAnnotation,this.match(B.eq)&&(this.eat(B.eq),e.default=this.flowParseType()),this.finishNode(e,"TypeParameter")},se.flowParseTypeParameterDeclaration=function(){var e=this.state.inType,t=this.startNode();t.params=[],this.state.inType=!0,this.isRelational("<")||this.match(B.jsxTagStart)?this.next():this.unexpected();do{t.params.push(this.flowParseTypeParameter()),this.isRelational(">")||this.expect(B.comma)}while(!this.isRelational(">"));return this.expectRelational(">"),this.state.inType=e,this.finishNode(t,"TypeParameterDeclaration")},se.flowParseTypeParameterInstantiation=function(){var e=this.startNode(),t=this.state.inType;for(e.params=[],this.state.inType=!0,this.expectRelational("<");!this.isRelational(">");)e.params.push(this.flowParseType()),this.isRelational(">")||this.expect(B.comma);return this.expectRelational(">"),this.state.inType=t,this.finishNode(e,"TypeParameterInstantiation")},se.flowParseObjectPropertyKey=function(){return this.match(B.num)||this.match(B.string)?this.parseExprAtom():this.parseIdentifier(!0)},se.flowParseObjectTypeIndexer=function(e,t,r){return e.static=t,this.expect(B.bracketL),this.lookahead().type===B.colon?(e.id=this.flowParseObjectPropertyKey(),e.key=this.flowParseTypeInitialiser()):(e.id=null,e.key=this.flowParseType()),this.expect(B.bracketR),e.value=this.flowParseTypeInitialiser(),e.variance=r,this.flowObjectTypeSemicolon(),this.finishNode(e,"ObjectTypeIndexer")},se.flowParseObjectTypeMethodish=function(e){for(e.params=[],e.rest=null,e.typeParameters=null,this.isRelational("<")&&(e.typeParameters=this.flowParseTypeParameterDeclaration()),this.expect(B.parenL);!this.match(B.parenR)&&!this.match(B.ellipsis);)e.params.push(this.flowParseFunctionTypeParam()),this.match(B.parenR)||this.expect(B.comma);return this.eat(B.ellipsis)&&(e.rest=this.flowParseFunctionTypeParam()),this.expect(B.parenR),e.returnType=this.flowParseTypeInitialiser(),this.finishNode(e,"FunctionTypeAnnotation")},se.flowParseObjectTypeMethod=function(e,t,r,n){var i=this.startNodeAt(e,t);return i.value=this.flowParseObjectTypeMethodish(this.startNodeAt(e,t)),i.static=r,i.key=n,i.optional=!1,this.flowObjectTypeSemicolon(),this.finishNode(i,"ObjectTypeProperty")},se.flowParseObjectTypeCallProperty=function(e,t){var r=this.startNode();return e.static=t,e.value=this.flowParseObjectTypeMethodish(r),this.flowObjectTypeSemicolon(),this.finishNode(e,"ObjectTypeCallProperty")},se.flowParseObjectType=function(e,t,r){var n=this.state.inType;this.state.inType=!0;var i=this.startNode(),s=void 0,a=void 0,o=!1;i.callProperties=[],i.properties=[],i.indexers=[];var u=void 0,l=void 0;for(t&&this.match(B.braceBarL)?(this.expect(B.braceBarL),u=B.braceBarR,l=!0):(this.expect(B.braceL),u=B.braceR,l=!1),i.exact=l;!this.match(u);){var c=!1,p=this.state.start,h=this.state.startLoc;s=this.startNode(),e&&this.isContextual("static")&&this.lookahead().type!==B.colon&&(this.next(),o=!0);var f=this.state.start,d=this.flowParseVariance();this.match(B.bracketL)?i.indexers.push(this.flowParseObjectTypeIndexer(s,o,d)):this.match(B.parenL)||this.isRelational("<")?(d&&this.unexpected(f),i.callProperties.push(this.flowParseObjectTypeCallProperty(s,o))):this.match(B.ellipsis)?(r||this.unexpected(null,"Spread operator cannot appear in class or interface definitions"),d&&this.unexpected(d.start,"Spread properties cannot have variance"),this.expect(B.ellipsis),s.argument=this.flowParseType(),this.flowObjectTypeSemicolon(),i.properties.push(this.finishNode(s,"ObjectTypeSpreadProperty"))):(a=this.flowParseObjectPropertyKey(),this.isRelational("<")||this.match(B.parenL)?(d&&this.unexpected(d.start),i.properties.push(this.flowParseObjectTypeMethod(p,h,o,a))):(this.eat(B.question)&&(c=!0),s.key=a,s.value=this.flowParseTypeInitialiser(),s.optional=c,s.static=o,s.variance=d,this.flowObjectTypeSemicolon(),i.properties.push(this.finishNode(s,"ObjectTypeProperty")))),o=!1}this.expect(u);var m=this.finishNode(i,"ObjectTypeAnnotation");return this.state.inType=n,m},se.flowObjectTypeSemicolon=function(){this.eat(B.semi)||this.eat(B.comma)||this.match(B.braceR)||this.match(B.braceBarR)||this.unexpected()},se.flowParseQualifiedTypeIdentifier=function(e,t,r){e=e||this.state.start,t=t||this.state.startLoc;for(var n=r||this.parseIdentifier();this.eat(B.dot);){var i=this.startNodeAt(e,t);i.qualification=n,i.id=this.parseIdentifier(),n=this.finishNode(i,"QualifiedTypeIdentifier")}return n},se.flowParseGenericType=function(e,t,r){var n=this.startNodeAt(e,t);return n.typeParameters=null,n.id=this.flowParseQualifiedTypeIdentifier(e,t,r),this.isRelational("<")&&(n.typeParameters=this.flowParseTypeParameterInstantiation()),this.finishNode(n,"GenericTypeAnnotation")},se.flowParseTypeofType=function(){var e=this.startNode();return this.expect(B._typeof),e.argument=this.flowParsePrimaryType(),this.finishNode(e,"TypeofTypeAnnotation")},se.flowParseTupleType=function(){var e=this.startNode();for(e.types=[],this.expect(B.bracketL);this.state.pos0&&void 0!==arguments[0]?arguments[0]:[],rest:null};!this.match(B.parenR)&&!this.match(B.ellipsis);)e.params.push(this.flowParseFunctionTypeParam()),this.match(B.parenR)||this.expect(B.comma);return this.eat(B.ellipsis)&&(e.rest=this.flowParseFunctionTypeParam()),e},se.flowIdentToTypeAnnotation=function(e,t,r,n){switch(n.name){case"any":return this.finishNode(r,"AnyTypeAnnotation");case"void":return this.finishNode(r,"VoidTypeAnnotation");case"bool":case"boolean":return this.finishNode(r,"BooleanTypeAnnotation");case"mixed":return this.finishNode(r,"MixedTypeAnnotation");case"empty":return this.finishNode(r,"EmptyTypeAnnotation");case"number":return this.finishNode(r,"NumberTypeAnnotation");case"string":return this.finishNode(r,"StringTypeAnnotation");default:return this.flowParseGenericType(e,t,n)}},se.flowParsePrimaryType=function(){var e=this.state.start,t=this.state.startLoc,r=this.startNode(),n=void 0,i=void 0,s=!1,a=this.state.noAnonFunctionType;switch(this.state.type){case B.name:return this.flowIdentToTypeAnnotation(e,t,r,this.parseIdentifier());case B.braceL:return this.flowParseObjectType(!1,!1,!0);case B.braceBarL:return this.flowParseObjectType(!1,!0,!0);case B.bracketL:return this.flowParseTupleType();case B.relational:if("<"===this.state.value)return r.typeParameters=this.flowParseTypeParameterDeclaration(),this.expect(B.parenL),n=this.flowParseFunctionTypeParams(),r.params=n.params,r.rest=n.rest,this.expect(B.parenR),this.expect(B.arrow),r.returnType=this.flowParseType(),this.finishNode(r,"FunctionTypeAnnotation");break;case B.parenL:if(this.next(),!this.match(B.parenR)&&!this.match(B.ellipsis))if(this.match(B.name)){var o=this.lookahead().type;s=o!==B.question&&o!==B.colon}else s=!0;if(s){if(this.state.noAnonFunctionType=!1,i=this.flowParseType(),this.state.noAnonFunctionType=a,this.state.noAnonFunctionType||!(this.match(B.comma)||this.match(B.parenR)&&this.lookahead().type===B.arrow))return this.expect(B.parenR),i;this.eat(B.comma)}return n=i?this.flowParseFunctionTypeParams([this.reinterpretTypeAsFunctionTypeParam(i)]):this.flowParseFunctionTypeParams(),r.params=n.params,r.rest=n.rest,this.expect(B.parenR),this.expect(B.arrow),r.returnType=this.flowParseType(),r.typeParameters=null,this.finishNode(r,"FunctionTypeAnnotation");case B.string:return this.parseLiteral(this.state.value,"StringLiteralTypeAnnotation");case B._true:case B._false:return r.value=this.match(B._true),this.next(),this.finishNode(r,"BooleanLiteralTypeAnnotation");case B.plusMin:if("-"===this.state.value)return this.next(),this.match(B.num)||this.unexpected(null,"Unexpected token, expected number"),this.parseLiteral(-this.state.value,"NumericLiteralTypeAnnotation",r.start,r.loc.start);this.unexpected();case B.num:return this.parseLiteral(this.state.value,"NumericLiteralTypeAnnotation");case B._null:return r.value=this.match(B._null),this.next(),this.finishNode(r,"NullLiteralTypeAnnotation");case B._this:return r.value=this.match(B._this),this.next(),this.finishNode(r,"ThisTypeAnnotation");case B.star:return this.next(),this.finishNode(r,"ExistentialTypeParam");default:if("typeof"===this.state.type.keyword)return this.flowParseTypeofType()}this.unexpected()},se.flowParsePostfixType=function(){for(var e=this.state.start,t=this.state.startLoc,r=this.flowParsePrimaryType();!this.canInsertSemicolon()&&this.match(B.bracketL);){var n=this.startNodeAt(e,t);n.elementType=r,this.expect(B.bracketL),this.expect(B.bracketR),r=this.finishNode(n,"ArrayTypeAnnotation")}return r},se.flowParsePrefixType=function(){var e=this.startNode();return this.eat(B.question)?(e.typeAnnotation=this.flowParsePrefixType(),this.finishNode(e,"NullableTypeAnnotation")):this.flowParsePostfixType()},se.flowParseAnonFunctionWithoutParens=function(){var e=this.flowParsePrefixType();if(!this.state.noAnonFunctionType&&this.eat(B.arrow)){var t=this.startNodeAt(e.start,e.loc.start);return t.params=[this.reinterpretTypeAsFunctionTypeParam(e)],t.rest=null,t.returnType=this.flowParseType(),t.typeParameters=null,this.finishNode(t,"FunctionTypeAnnotation")}return e},se.flowParseIntersectionType=function(){var e=this.startNode();this.eat(B.bitwiseAND);var t=this.flowParseAnonFunctionWithoutParens();for(e.types=[t];this.eat(B.bitwiseAND);)e.types.push(this.flowParseAnonFunctionWithoutParens());return 1===e.types.length?t:this.finishNode(e,"IntersectionTypeAnnotation")},se.flowParseUnionType=function(){var e=this.startNode();this.eat(B.bitwiseOR);var t=this.flowParseIntersectionType();for(e.types=[t];this.eat(B.bitwiseOR);)e.types.push(this.flowParseIntersectionType());return 1===e.types.length?t:this.finishNode(e,"UnionTypeAnnotation")},se.flowParseType=function(){var e=this.state.inType;this.state.inType=!0;var t=this.flowParseUnionType();return this.state.inType=e,t},se.flowParseTypeAnnotation=function(){var e=this.startNode();return e.typeAnnotation=this.flowParseTypeInitialiser(),this.finishNode(e,"TypeAnnotation")},se.flowParseTypeAndPredicateAnnotation=function(){var e=this.startNode(),t=this.flowParseTypeAndPredicateInitialiser();return e.typeAnnotation=t[0],e.predicate=t[1],this.finishNode(e,"TypeAnnotation")},se.flowParseTypeAnnotatableIdentifier=function(){var e=this.flowParseRestrictedIdentifier();return this.match(B.colon)&&(e.typeAnnotation=this.flowParseTypeAnnotation(),this.finishNode(e,e.type)),e},se.typeCastToParameter=function(e){return e.expression.typeAnnotation=e.typeAnnotation,this.finishNodeAt(e.expression,e.expression.type,e.typeAnnotation.end,e.typeAnnotation.loc.end)},se.flowParseVariance=function(){var e=null;return this.match(B.plusMin)&&("+"===this.state.value?e="plus":"-"===this.state.value&&(e="minus"),this.next()),e};var ae=String.fromCodePoint;if(!ae){var oe=String.fromCharCode,ue=Math.floor;ae=function(){var e=[],t=void 0,r=void 0,n=-1,i=arguments.length;if(!i)return"";for(var s="";++n1114111||ue(a)!=a)throw RangeError("Invalid code point: "+a);a<=65535?e.push(a):(t=55296+((a-=65536)>>10),r=a%1024+56320,e.push(t,r)),(n+1==i||e.length>16384)&&(s+=oe.apply(null,e),e.length=0)}return s}}var le=ae,ce={quot:'"',amp:"&",apos:"'",lt:"<",gt:">",nbsp:" ",iexcl:"¡",cent:"¢",pound:"£",curren:"¤",yen:"¥",brvbar:"¦",sect:"§",uml:"¨",copy:"©",ordf:"ª",laquo:"«",not:"¬",shy:"­",reg:"®",macr:"¯",deg:"°",plusmn:"±",sup2:"²",sup3:"³",acute:"´",micro:"µ",para:"¶",middot:"·",cedil:"¸",sup1:"¹",ordm:"º",raquo:"»",frac14:"¼",frac12:"½",frac34:"¾",iquest:"¿",Agrave:"À",Aacute:"Á",Acirc:"Â",Atilde:"Ã",Auml:"Ä",Aring:"Å",AElig:"Æ",Ccedil:"Ç",Egrave:"È",Eacute:"É",Ecirc:"Ê",Euml:"Ë",Igrave:"Ì",Iacute:"Í",Icirc:"Î",Iuml:"Ï",ETH:"Ð",Ntilde:"Ñ",Ograve:"Ò",Oacute:"Ó",Ocirc:"Ô",Otilde:"Õ",Ouml:"Ö",times:"×",Oslash:"Ø",Ugrave:"Ù",Uacute:"Ú",Ucirc:"Û",Uuml:"Ü",Yacute:"Ý",THORN:"Þ",szlig:"ß",agrave:"à",aacute:"á",acirc:"â",atilde:"ã",auml:"ä",aring:"å",aelig:"æ",ccedil:"ç",egrave:"è",eacute:"é",ecirc:"ê",euml:"ë",igrave:"ì",iacute:"í",icirc:"î",iuml:"ï",eth:"ð",ntilde:"ñ",ograve:"ò",oacute:"ó",ocirc:"ô",otilde:"õ",ouml:"ö",divide:"÷",oslash:"ø",ugrave:"ù",uacute:"ú",ucirc:"û",uuml:"ü",yacute:"ý",thorn:"þ",yuml:"ÿ",OElig:"Œ",oelig:"œ",Scaron:"Š",scaron:"š",Yuml:"Ÿ",fnof:"ƒ",circ:"ˆ",tilde:"˜",Alpha:"Α",Beta:"Β",Gamma:"Γ",Delta:"Δ",Epsilon:"Ε",Zeta:"Ζ",Eta:"Η",Theta:"Θ",Iota:"Ι",Kappa:"Κ",Lambda:"Λ",Mu:"Μ",Nu:"Ν",Xi:"Ξ",Omicron:"Ο",Pi:"Π",Rho:"Ρ",Sigma:"Σ",Tau:"Τ",Upsilon:"Υ",Phi:"Φ",Chi:"Χ",Psi:"Ψ",Omega:"Ω",alpha:"α",beta:"β",gamma:"γ",delta:"δ",epsilon:"ε",zeta:"ζ",eta:"η",theta:"θ",iota:"ι",kappa:"κ",lambda:"λ",mu:"μ",nu:"ν",xi:"ξ",omicron:"ο",pi:"π",rho:"ρ",sigmaf:"ς",sigma:"σ",tau:"τ",upsilon:"υ",phi:"φ",chi:"χ",psi:"ψ",omega:"ω",thetasym:"ϑ",upsih:"ϒ",piv:"ϖ",ensp:" ",emsp:" ",thinsp:" ",zwnj:"‌",zwj:"‍",lrm:"‎",rlm:"‏",ndash:"–",mdash:"—",lsquo:"‘",rsquo:"’",sbquo:"‚",ldquo:"“",rdquo:"”",bdquo:"„",dagger:"†",Dagger:"‡",bull:"•",hellip:"…",permil:"‰",prime:"′",Prime:"″",lsaquo:"‹",rsaquo:"›",oline:"‾",frasl:"⁄",euro:"€",image:"ℑ",weierp:"℘",real:"ℜ",trade:"™",alefsym:"ℵ",larr:"←",uarr:"↑",rarr:"→",darr:"↓",harr:"↔",crarr:"↵",lArr:"⇐",uArr:"⇑",rArr:"⇒",dArr:"⇓",hArr:"⇔",forall:"∀",part:"∂",exist:"∃",empty:"∅",nabla:"∇",isin:"∈",notin:"∉",ni:"∋",prod:"∏",sum:"∑",minus:"−",lowast:"∗",radic:"√",prop:"∝",infin:"∞",ang:"∠",and:"∧",or:"∨",cap:"∩",cup:"∪",int:"∫",there4:"∴",sim:"∼",cong:"≅",asymp:"≈",ne:"≠",equiv:"≡",le:"≤",ge:"≥",sub:"⊂",sup:"⊃",nsub:"⊄",sube:"⊆",supe:"⊇",oplus:"⊕",otimes:"⊗",perp:"⊥",sdot:"⋅",lceil:"⌈",rceil:"⌉",lfloor:"⌊",rfloor:"⌋",lang:"〈",rang:"〉",loz:"◊",spades:"♠",clubs:"♣",hearts:"♥",diams:"♦"},pe=/^[\da-fA-F]+$/,he=/^\d+$/;M.j_oTag=new L("...",!0,!0),B.jsxName=new F("jsxName"),B.jsxText=new F("jsxText",{beforeExpr:!0}),B.jsxTagStart=new F("jsxTagStart",{startsExpr:!0}),B.jsxTagEnd=new F("jsxTagEnd"),B.jsxTagStart.updateContext=function(){this.state.context.push(M.j_expr),this.state.context.push(M.j_oTag),this.state.exprAllowed=!1},B.jsxTagEnd.updateContext=function(e){var t=this.state.context.pop();t===M.j_oTag&&e===B.slash||t===M.j_cTag?(this.state.context.pop(),this.state.exprAllowed=this.curContext()===M.j_expr):this.state.exprAllowed=!0};var fe=W.prototype;fe.jsxReadToken=function(){for(var e="",t=this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated JSX contents");var r=this.input.charCodeAt(this.state.pos);switch(r){case 60:case 123:return this.state.pos===this.state.start?60===r&&this.state.exprAllowed?(++this.state.pos,this.finishToken(B.jsxTagStart)):this.getTokenFromCode(r):(e+=this.input.slice(t,this.state.pos),this.finishToken(B.jsxText,e));case 38:e+=this.input.slice(t,this.state.pos),e+=this.jsxReadEntity(),t=this.state.pos;break;default:u(r)?(e+=this.input.slice(t,this.state.pos),e+=this.jsxReadNewLine(!0),t=this.state.pos):++this.state.pos}}},fe.jsxReadNewLine=function(e){var t=this.input.charCodeAt(this.state.pos),r=void 0;return++this.state.pos,13===t&&10===this.input.charCodeAt(this.state.pos)?(++this.state.pos,r=e?"\n":"\r\n"):r=String.fromCharCode(t),++this.state.curLine,this.state.lineStart=this.state.pos,r},fe.jsxReadString=function(e){for(var t="",r=++this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated string constant");var n=this.input.charCodeAt(this.state.pos);if(n===e)break;38===n?(t+=this.input.slice(r,this.state.pos),t+=this.jsxReadEntity(),r=this.state.pos):u(n)?(t+=this.input.slice(r,this.state.pos),t+=this.jsxReadNewLine(!1),r=this.state.pos):++this.state.pos}return t+=this.input.slice(r,this.state.pos++),this.finishToken(B.string,t)},fe.jsxReadEntity=function(){for(var e="",t=0,r=void 0,n=this.input[this.state.pos],i=++this.state.pos;this.state.pos")}return r.openingElement=i,r.closingElement=s,r.children=n,this.match(B.relational)&&"<"===this.state.value&&this.raise(this.state.start,"Adjacent JSX elements must be wrapped in an enclosing tag"),this.finishNode(r,"JSXElement")},fe.jsxParseElement=function(){var e=this.state.start,t=this.state.startLoc;return this.next(),this.jsxParseElementAt(e,t)};G.estree=function(e){e.extend("checkDeclaration",function(e){return function(t){f(t)?this.checkDeclaration(t.value):e.call(this,t)}}),e.extend("checkGetterSetterParamCount",function(){return function(e){var t="get"===e.kind?0:1;if(e.value.params.length!==t){var r=e.start;"get"===e.kind?this.raise(r,"getter should have no params"):this.raise(r,"setter should have exactly one param")}}}),e.extend("checkLVal",function(e){return function(t,r,n){var i=this;switch(t.type){case"ObjectPattern":t.properties.forEach(function(e){i.checkLVal("Property"===e.type?e.value:e,r,n,"object destructuring pattern")});break;default:for(var s=arguments.length,a=Array(s>3?s-3:0),o=3;o0)for(var r=e.body.body,n=Array.isArray(r),i=0,r=n?r:r[Symbol.iterator]();;){var s;if(n){if(i>=r.length)break;s=r[i++]}else{if((i=r.next()).done)break;s=i.value}var a=s;if("ExpressionStatement"!==a.type||"Literal"!==a.expression.type)break;if("use strict"===a.expression.value)return!0}return!1}}),e.extend("isValidDirective",function(){return function(e){return!("ExpressionStatement"!==e.type||"Literal"!==e.expression.type||"string"!=typeof e.expression.value||e.expression.extra&&e.expression.extra.parenthesized)}}),e.extend("stmtToDirective",function(e){return function(t){var r=e.call(this,t),n=t.expression.value;return r.value.value=n,r}}),e.extend("parseBlockBody",function(e){return function(t){for(var r=this,n=arguments.length,i=Array(n>1?n-1:0),s=1;s1?n-1:0),s=1;s2?n-2:0),s=2;s=a.length)break;l=a[u++]}else{if((u=a.next()).done)break;l=u.value}var c=l;"get"===c.kind||"set"===c.kind?this.raise(c.key.start,"Object pattern can't contain getter or setter"):c.method?this.raise(c.key.start,"Object pattern can't contain methods"):this.toAssignable(c,r,"object destructuring pattern")}return t}return e.call.apply(e,[this,t,r].concat(i))}})},G.flow=function(e){e.extend("parseFunctionBody",function(e){return function(t,r){return this.match(B.colon)&&!r&&(t.returnType=this.flowParseTypeAndPredicateAnnotation()),e.call(this,t,r)}}),e.extend("parseStatement",function(e){return function(t,r){if(this.state.strict&&this.match(B.name)&&"interface"===this.state.value){var n=this.startNode();return this.next(),this.flowParseInterface(n)}return e.call(this,t,r)}}),e.extend("parseExpressionStatement",function(e){return 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to call when the current element has been dealt with + * `element` a single element of the aforementioned array + * `index` the index of the current element + * `array` the same array mentioned above + * `thisArg` Object to use as `this` when executing `callback` + +**`forEachAsync#then(done)`** + +Parameters + + * `then` is in the return value of `forEachAsync` and accepts a final `done` callback. + * `done` called after `forEachAsync` is complete, takes no arguments + +Internal API +=== + +`forEachAsync.__BREAK` + +This is used internally for the purposes of the `ArrayAsync` library. + +Please don't `break` stuff; use [`ArrayAsync`](https://github.com/FuturesJS/ArrayAsync)`.someAsync` or [`ArrayAsync`](https://github.com/FuturesJS/ArrayAsync)`.everyAsync` instead. diff --git a/src/js-validator/node_modules/foreachasync/bower.json b/src/js-validator/node_modules/foreachasync/bower.json new file mode 100644 index 000000000..085a7d9dc --- /dev/null +++ b/src/js-validator/node_modules/foreachasync/bower.json @@ -0,0 +1,27 @@ +{ + "name": "forEachAsync", + "main": "forEachAsync.js", + "version": "3.0.0", + "homepage": "https://github.com/FuturesJS/forEachAsync", + "authors": [ + "AJ ONeal " + ], + "description": "A node- and browser-ready async counterpart of Array.prototype.forEach", + "keywords": [ + "futuresjs", + "forEachAsync", + "forEach", + "for", + "async", + "each", + "asynchronous" + ], + "license": "Apache-v2", + "ignore": [ + "**/.*", + "node_modules", + "bower_components", + "test", + "tests" + ] +} diff --git a/src/js-validator/node_modules/foreachasync/forEachAsync.js b/src/js-validator/node_modules/foreachasync/forEachAsync.js new file mode 100644 index 000000000..8790d7817 --- /dev/null +++ b/src/js-validator/node_modules/foreachasync/forEachAsync.js @@ -0,0 +1,35 @@ +/*jshint -W054 */ +;(function (exports) { + 'use strict'; + + function forEachAsync(arr, fn, thisArg) { + var dones = [] + , index = -1 + ; + + function next(BREAK, result) { + index += 1; + + if (index === arr.length || BREAK === forEachAsync.__BREAK) { + dones.forEach(function (done) { + done.call(thisArg, result); + }); + return; + } + + fn.call(thisArg, next, arr[index], index, arr); + } + + setTimeout(next, 4); + + return { + then: function (_done) { + dones.push(_done); + return this; + } + }; + } + forEachAsync.__BREAK = {}; + + exports.forEachAsync = forEachAsync; +}('undefined' !== typeof exports && exports || new Function('return this')())); diff --git a/src/js-validator/node_modules/foreachasync/package.json b/src/js-validator/node_modules/foreachasync/package.json new file mode 100644 index 000000000..dfa595b7c --- /dev/null +++ b/src/js-validator/node_modules/foreachasync/package.json @@ -0,0 +1,82 @@ +{ + "_args": [ + [ + "foreachasync@^3.0.0", + "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/walk" + ] + ], + "_from": "foreachasync@>=3.0.0 <4.0.0", + "_id": "foreachasync@3.0.0", + "_inCache": true, + "_installable": true, + "_location": "/foreachasync", + "_npmUser": { + "email": "coolaj86@gmail.com", + "name": "coolaj86" + }, + "_npmVersion": "1.3.22", + "_phantomChildren": {}, + "_requested": { + "name": "foreachasync", + "raw": "foreachasync@^3.0.0", + "rawSpec": "^3.0.0", + "scope": null, + "spec": ">=3.0.0 <4.0.0", + "type": "range" + }, + "_requiredBy": [ + "/walk" + ], + "_resolved": "https://registry.npmjs.org/foreachasync/-/foreachasync-3.0.0.tgz", + "_shasum": "5502987dc8714be3392097f32e0071c9dee07cf6", + "_shrinkwrap": null, + "_spec": "foreachasync@^3.0.0", + "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/walk", + "author": { + "email": "coolaj86@gmail.com", + "name": "AJ ONeal", + "url": "http://coolaj86.com/" + }, + "bugs": { + "url": "https://github.com/FuturesJS/forEachAsync/issues" + }, + "dependencies": {}, + "description": "A node- and browser-ready async counterpart of Array.prototype.forEach", + "devDependencies": {}, + "directories": { + "test": "test" + }, + "dist": { + "shasum": "5502987dc8714be3392097f32e0071c9dee07cf6", + "tarball": "https://registry.npmjs.org/foreachasync/-/foreachasync-3.0.0.tgz" + }, + "homepage": "https://github.com/FuturesJS/forEachAsync", + "keywords": [ + "async", + "each", + "for", + "forEach", + "forEachAsync", + "futures", + "futuresjs" + ], + "license": "Apache2", + "main": "forEachAsync.js", + "maintainers": [ + { + "name": "coolaj86", + "email": "coolaj86@gmail.com" + } + ], + "name": "foreachasync", + "optionalDependencies": {}, + "readme": "ERROR: No README data found!", + "repository": { + "type": "git", + "url": "git://github.com/FuturesJS/forEachAsync.git" + }, + "scripts": { + "test": "echo \"Error: no test specified\" && exit 1" + }, + "version": "3.0.0" +} diff --git a/src/js-validator/node_modules/foreachasync/test.js b/src/js-validator/node_modules/foreachasync/test.js new file mode 100644 index 000000000..7c1cfe952 --- /dev/null +++ b/src/js-validator/node_modules/foreachasync/test.js @@ -0,0 +1,29 @@ +(function () { + "use strict"; + + var forEachAsync = require('./forEachAsync').forEachAsync + ; + + forEachAsync([0, 500, 70, 200, 400, 100], function (next, element, i, arr) { + // test that array order is as expected + console.log(element, 'is element', i, 'of', arr.length); + + // test that thisness is applied + this[element] = i; + + if (i > 2) { + // test that synchronous callbacks don't mess things up + next(); + } else { + // test asynchronous callbacks + setTimeout(next, element); + } + }, {}).then(function () { + // test that thisness carries + console.log(this); + }).then(function () { + // test then chaining + console.log("now wasn't that nice?"); + }); + +}()); diff --git a/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml b/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml new file mode 100644 index 000000000..ab1762da9 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml @@ -0,0 +1,27 @@ +extends: eslint:recommended +env: + node: true + browser: true +rules: + block-scoped-var: 2 + complexity: [2, 13] + curly: [2, multi-or-nest, consistent] + dot-location: [2, property] + dot-notation: 2 + indent: [2, 2, SwitchCase: 1] + linebreak-style: [2, unix] + new-cap: 2 + no-console: [2, allow: [warn, error]] + no-else-return: 2 + no-eq-null: 2 + no-fallthrough: 2 + no-invalid-this: 2 + no-return-assign: 2 + no-shadow: 1 + no-trailing-spaces: 2 + no-use-before-define: [2, nofunc] + quotes: [2, single, avoid-escape] + semi: [2, always] + strict: [2, global] + valid-jsdoc: [2, requireReturn: false] + no-control-regex: 0 diff --git a/src/js-validator/node_modules/json-schema-traverse/.npmignore b/src/js-validator/node_modules/json-schema-traverse/.npmignore new file mode 100644 index 000000000..d09355793 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/.npmignore @@ -0,0 +1,60 @@ +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* + +# Runtime data +pids +*.pid +*.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# Bower dependency directory (https://bower.io/) +bower_components + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (http://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules/ +jspm_packages/ + +# Typescript v1 declaration files +typings/ + +# Optional npm cache directory +.npm + +# Optional eslint cache +.eslintcache + +# Optional REPL history +.node_repl_history + +# Output of 'npm pack' +*.tgz + +# Yarn Integrity file +.yarn-integrity + +# dotenv environment variables file +.env + +.DS_Store diff --git a/src/js-validator/node_modules/json-schema-traverse/.travis.yml b/src/js-validator/node_modules/json-schema-traverse/.travis.yml new file mode 100644 index 000000000..7ddce74b8 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/.travis.yml @@ -0,0 +1,8 @@ +language: node_js +node_js: + - "4" + - "6" + - "7" + - "8" +after_script: + - coveralls < coverage/lcov.info diff --git a/src/js-validator/node_modules/json-schema-traverse/LICENSE b/src/js-validator/node_modules/json-schema-traverse/LICENSE new file mode 100644 index 000000000..7f1543566 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/LICENSE @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2017 Evgeny Poberezkin + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/src/js-validator/node_modules/json-schema-traverse/README.md b/src/js-validator/node_modules/json-schema-traverse/README.md new file mode 100644 index 000000000..d4286a23b --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/README.md @@ -0,0 +1,69 @@ +# json-schema-traverse +Traverse JSON Schema passing each schema object to callback + +[![Build Status](https://travis-ci.org/epoberezkin/json-schema-traverse.svg?branch=master)](https://travis-ci.org/epoberezkin/json-schema-traverse) +[![npm version](https://badge.fury.io/js/json-schema-traverse.svg)](https://www.npmjs.com/package/json-schema-traverse) +[![Coverage Status](https://coveralls.io/repos/github/epoberezkin/json-schema-traverse/badge.svg?branch=master)](https://coveralls.io/github/epoberezkin/json-schema-traverse?branch=master) + + +## Install + +``` +npm install json-schema-traverse +``` + + +## Usage + +```javascript +const traverse = require('json-schema-traverse'); +const schema = { + properties: { + foo: {type: 'string'}, + bar: {type: 'integer'} + } +}; + +traverse(schema, cb); +// cb is called 3 times with: +// 1. root schema +// 2. {type: 'string'} +// 3. {type: 'integer'} +``` + +Callback function is called for each schema object (not including draft-06 boolean schemas), including the root schema. Schema references ($ref) are not resolved, they are passed as is. + +Callback is passed these parameters: + +- _schema_: the current schema object +- _JSON pointer_: from the root schema to the current schema object +- _root schema_: the schema passed to `traverse` object +- _parent JSON pointer_: from the root schema to the parent schema object (see below) +- _parent keyword_: the keyword inside which this schema appears (e.g. `properties`, `anyOf`, etc.) +- _parent schema_: not necessarily parent object/array; in the example above the parent schema for `{type: 'string'}` is the root schema +- _index/property_: index or property name in the array/object containing multiple schemas; in the example above for `{type: 'string'}` the property name is `'foo'` + + +## Traverse objects in all unknown keywords + +```javascript +const traverse = require('json-schema-traverse'); +const schema = { + mySchema: { + minimum: 1, + maximum: 2 + } +}; + +traverse(schema, {allKeys: true}, cb); +// cb is called 2 times with: +// 1. root schema +// 2. mySchema +``` + +Without option `allKeys: true` callback will be called only with root schema. + + +## License + +[MIT](https://github.com/epoberezkin/json-schema-traverse/blob/master/LICENSE) diff --git a/src/js-validator/node_modules/json-schema-traverse/index.js b/src/js-validator/node_modules/json-schema-traverse/index.js new file mode 100644 index 000000000..79eeb6a05 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/index.js @@ -0,0 +1,81 @@ +'use strict'; + +var traverse = module.exports = function (schema, opts, cb) { + if (typeof opts == 'function') { + cb = opts; + opts = {}; + } + _traverse(opts, cb, schema, '', schema); +}; + + +traverse.keywords = { + additionalItems: true, + items: true, + contains: true, + additionalProperties: true, + propertyNames: true, + not: true +}; + +traverse.arrayKeywords = { + items: true, + allOf: true, + anyOf: true, + oneOf: true +}; + +traverse.propsKeywords = { + definitions: true, + properties: true, + patternProperties: true, + dependencies: true +}; + +traverse.skipKeywords = { + enum: true, + const: true, + required: true, + maximum: true, + minimum: true, + exclusiveMaximum: true, + exclusiveMinimum: true, + multipleOf: true, + maxLength: true, + minLength: true, + pattern: true, + format: true, + maxItems: true, + minItems: true, + uniqueItems: true, + maxProperties: true, + minProperties: true +}; + + +function _traverse(opts, cb, schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex) { + if (schema && typeof schema == 'object' && !Array.isArray(schema)) { + cb(schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex); + for (var key in schema) { + var sch = schema[key]; + if (Array.isArray(sch)) { + if (key in traverse.arrayKeywords) { + for (var i=0; i=0.3.0 <0.4.0", + "_id": "json-schema-traverse@0.3.1", + "_inCache": true, + "_installable": true, + "_location": "/json-schema-traverse", + "_nodeVersion": "6.9.1", + "_npmOperationalInternal": { + "host": "s3://npm-registry-packages", + "tmp": "tmp/json-schema-traverse-0.3.1.tgz_1498261856588_0.601617609616369" + }, + "_npmUser": { + "email": "e.poberezkin@me.com", + "name": "esp" + }, + "_npmVersion": "3.10.8", + "_phantomChildren": {}, + "_requested": { + "name": "json-schema-traverse", + "raw": "json-schema-traverse@^0.3.0", + "rawSpec": "^0.3.0", + "scope": null, + "spec": ">=0.3.0 <0.4.0", + "type": "range" + }, + "_requiredBy": [ + "/ajv" + ], + "_resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-0.3.1.tgz", + "_shasum": "349a6d44c53a51de89b40805c5d5e59b417d3340", + "_shrinkwrap": null, + "_spec": "json-schema-traverse@^0.3.0", + "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/ajv", + "author": { + "name": "Evgeny Poberezkin" + }, + "bugs": { + "url": "https://github.com/epoberezkin/json-schema-traverse/issues" + }, + "dependencies": {}, + "description": "Traverse JSON Schema passing each schema object to callback", + "devDependencies": { + "coveralls": "^2.13.1", + "eslint": "^3.19.0", + "mocha": "^3.4.2", + "nyc": "^11.0.2", + "pre-commit": "^1.2.2" + }, + "directories": {}, + "dist": { + "shasum": "349a6d44c53a51de89b40805c5d5e59b417d3340", + "tarball": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-0.3.1.tgz" + }, + "gitHead": "f0a6627655525debea519dc8ebb4cf35f3c8e85f", + "homepage": "https://github.com/epoberezkin/json-schema-traverse#readme", + "keywords": [ + "JSON-Schema", + "iterate", + "traverse" + ], + "license": "MIT", + "main": "index.js", + "maintainers": [ + { + "name": "esp", + "email": "e.poberezkin@me.com" + } + ], + "name": "json-schema-traverse", + "nyc": { + "exclude": [ + "**/spec/**", + "node_modules" + ], + "reporter": [ + "lcov", + "text-summary" + ] + }, + "optionalDependencies": {}, + "readme": "ERROR: No README data found!", + "repository": { + "type": "git", + "url": "git+https://github.com/epoberezkin/json-schema-traverse.git" + }, + "scripts": { + "eslint": "eslint index.js spec", + "test": "npm run eslint && nyc npm run test-spec", + "test-spec": "mocha spec -R spec" + }, + "version": "0.3.1" +} diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml b/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml new file mode 100644 index 000000000..3344da7eb --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml @@ -0,0 +1,6 @@ +parserOptions: + ecmaVersion: 6 +globals: + beforeEach: false + describe: false + it: false diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js b/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js new file mode 100644 index 000000000..c51430cdc --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js @@ -0,0 +1,125 @@ +'use strict'; + +var schema = { + additionalItems: subschema('additionalItems'), + items: subschema('items'), + contains: subschema('contains'), + additionalProperties: subschema('additionalProperties'), + propertyNames: subschema('propertyNames'), + not: subschema('not'), + allOf: [ + subschema('allOf_0'), + subschema('allOf_1'), + { + items: [ + subschema('items_0'), + subschema('items_1'), + ] + } + ], + anyOf: [ + subschema('anyOf_0'), + subschema('anyOf_1'), + ], + oneOf: [ + subschema('oneOf_0'), + subschema('oneOf_1'), + ], + definitions: { + foo: subschema('definitions_foo'), + bar: subschema('definitions_bar'), + }, + properties: { + foo: subschema('properties_foo'), + bar: subschema('properties_bar'), + }, + patternProperties: { + foo: subschema('patternProperties_foo'), + bar: subschema('patternProperties_bar'), + }, + dependencies: { + foo: subschema('dependencies_foo'), + bar: subschema('dependencies_bar'), + }, + required: ['foo', 'bar'] +}; + + +function subschema(keyword) { + var sch = { + properties: {}, + additionalProperties: false, + additionalItems: false, + anyOf: [ + {format: 'email'}, + {format: 'hostname'} + ] + }; + sch.properties['foo_' + keyword] = {title: 'foo'}; + sch.properties['bar_' + keyword] = {title: 'bar'}; + return sch; +} + + +module.exports = { + schema: schema, + + // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex + expectedCalls: [[schema, '', schema, undefined, undefined, undefined, undefined]] + .concat(expectedCalls('additionalItems')) + .concat(expectedCalls('items')) + .concat(expectedCalls('contains')) + .concat(expectedCalls('additionalProperties')) + .concat(expectedCalls('propertyNames')) + .concat(expectedCalls('not')) + .concat(expectedCallsChild('allOf', 0)) + .concat(expectedCallsChild('allOf', 1)) + .concat([ + [schema.allOf[2], '/allOf/2', schema, '', 'allOf', schema, 2], + [schema.allOf[2].items[0], '/allOf/2/items/0', schema, '/allOf/2', 'items', schema.allOf[2], 0], + [schema.allOf[2].items[0].properties.foo_items_0, '/allOf/2/items/0/properties/foo_items_0', schema, '/allOf/2/items/0', 'properties', schema.allOf[2].items[0], 'foo_items_0'], + [schema.allOf[2].items[0].properties.bar_items_0, '/allOf/2/items/0/properties/bar_items_0', schema, '/allOf/2/items/0', 'properties', schema.allOf[2].items[0], 'bar_items_0'], + [schema.allOf[2].items[0].anyOf[0], '/allOf/2/items/0/anyOf/0', schema, '/allOf/2/items/0', 'anyOf', schema.allOf[2].items[0], 0], + [schema.allOf[2].items[0].anyOf[1], '/allOf/2/items/0/anyOf/1', schema, '/allOf/2/items/0', 'anyOf', schema.allOf[2].items[0], 1], + + [schema.allOf[2].items[1], '/allOf/2/items/1', schema, '/allOf/2', 'items', schema.allOf[2], 1], + [schema.allOf[2].items[1].properties.foo_items_1, '/allOf/2/items/1/properties/foo_items_1', schema, '/allOf/2/items/1', 'properties', schema.allOf[2].items[1], 'foo_items_1'], + [schema.allOf[2].items[1].properties.bar_items_1, '/allOf/2/items/1/properties/bar_items_1', schema, '/allOf/2/items/1', 'properties', schema.allOf[2].items[1], 'bar_items_1'], + [schema.allOf[2].items[1].anyOf[0], '/allOf/2/items/1/anyOf/0', schema, '/allOf/2/items/1', 'anyOf', schema.allOf[2].items[1], 0], + [schema.allOf[2].items[1].anyOf[1], '/allOf/2/items/1/anyOf/1', schema, '/allOf/2/items/1', 'anyOf', schema.allOf[2].items[1], 1] + ]) + .concat(expectedCallsChild('anyOf', 0)) + .concat(expectedCallsChild('anyOf', 1)) + .concat(expectedCallsChild('oneOf', 0)) + .concat(expectedCallsChild('oneOf', 1)) + .concat(expectedCallsChild('definitions', 'foo')) + .concat(expectedCallsChild('definitions', 'bar')) + .concat(expectedCallsChild('properties', 'foo')) + .concat(expectedCallsChild('properties', 'bar')) + .concat(expectedCallsChild('patternProperties', 'foo')) + .concat(expectedCallsChild('patternProperties', 'bar')) + .concat(expectedCallsChild('dependencies', 'foo')) + .concat(expectedCallsChild('dependencies', 'bar')) +}; + + +function expectedCalls(keyword) { + return [ + [schema[keyword], `/${keyword}`, schema, '', keyword, schema, undefined], + [schema[keyword].properties[`foo_${keyword}`], `/${keyword}/properties/foo_${keyword}`, schema, `/${keyword}`, 'properties', schema[keyword], `foo_${keyword}`], + [schema[keyword].properties[`bar_${keyword}`], `/${keyword}/properties/bar_${keyword}`, schema, `/${keyword}`, 'properties', schema[keyword], `bar_${keyword}`], + [schema[keyword].anyOf[0], `/${keyword}/anyOf/0`, schema, `/${keyword}`, 'anyOf', schema[keyword], 0], + [schema[keyword].anyOf[1], `/${keyword}/anyOf/1`, schema, `/${keyword}`, 'anyOf', schema[keyword], 1] + ]; +} + + +function expectedCallsChild(keyword, i) { + return [ + [schema[keyword][i], `/${keyword}/${i}`, schema, '', keyword, schema, i], + [schema[keyword][i].properties[`foo_${keyword}_${i}`], `/${keyword}/${i}/properties/foo_${keyword}_${i}`, schema, `/${keyword}/${i}`, 'properties', schema[keyword][i], `foo_${keyword}_${i}`], + [schema[keyword][i].properties[`bar_${keyword}_${i}`], `/${keyword}/${i}/properties/bar_${keyword}_${i}`, schema, `/${keyword}/${i}`, 'properties', schema[keyword][i], `bar_${keyword}_${i}`], + [schema[keyword][i].anyOf[0], `/${keyword}/${i}/anyOf/0`, schema, `/${keyword}/${i}`, 'anyOf', schema[keyword][i], 0], + [schema[keyword][i].anyOf[1], `/${keyword}/${i}/anyOf/1`, schema, `/${keyword}/${i}`, 'anyOf', schema[keyword][i], 1] + ]; +} diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js b/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js new file mode 100644 index 000000000..7e66143d3 --- /dev/null +++ b/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js @@ -0,0 +1,102 @@ +'use strict'; + +var traverse = require('../index'); +var assert = require('assert'); + +describe('json-schema-traverse', function() { + var calls; + + beforeEach(function() { + calls = []; + }); + + it('should traverse all keywords containing schemas recursively', function() { + var schema = require('./fixtures/schema').schema; + var expectedCalls = require('./fixtures/schema').expectedCalls; + + traverse(schema, callback); + assert.deepStrictEqual(calls, expectedCalls); + }); + + + describe('allKeys option', function() { + var schema = { + someObject: { + minimum: 1, + maximum: 2 + } + }; + + it('should traverse objects with allKeys: true option', function() { + // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex + var expectedCalls = [ + [schema, '', schema, undefined, undefined, undefined, undefined], + [schema.someObject, '/someObject', schema, '', 'someObject', schema, undefined] + ]; + + traverse(schema, {allKeys: true}, callback); + assert.deepStrictEqual(calls, expectedCalls); + }); + + + it('should NOT traverse objects with allKeys: false option', function() { + // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex + var expectedCalls = [ + [schema, '', schema, undefined, undefined, undefined, undefined] + ]; + + traverse(schema, {allKeys: false}, callback); + assert.deepStrictEqual(calls, expectedCalls); + }); + + + it('should NOT traverse objects without allKeys option', function() { + // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex + var expectedCalls = [ + [schema, '', schema, undefined, undefined, undefined, undefined] + ]; + + traverse(schema, callback); + assert.deepStrictEqual(calls, expectedCalls); + }); + + + it('should NOT travers objects in standard keywords which value is not a schema', function() { + var schema2 = { + const: {foo: 'bar'}, + enum: ['a', 'b'], + required: ['foo'], + another: { + + }, + patternProperties: {}, // will not traverse - no properties + dependencies: true, // will not traverse - invalid + properties: { + smaller: { + type: 'number' + }, + larger: { + type: 'number', + minimum: {$data: '1/smaller'} + } + } + }; + + // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex + var expectedCalls = [ + [schema2, '', schema2, undefined, undefined, undefined, undefined], + [schema2.another, '/another', schema2, '', 'another', schema2, undefined], + [schema2.properties.smaller, '/properties/smaller', schema2, '', 'properties', schema2, 'smaller'], + [schema2.properties.larger, '/properties/larger', schema2, '', 'properties', schema2, 'larger'], + ]; + + traverse(schema2, {allKeys: true}, callback); + assert.deepStrictEqual(calls, expectedCalls); + }); + }); + + + function callback() { + calls.push(Array.prototype.slice.call(arguments)); + } +}); diff --git a/src/js-validator/node_modules/walk/README.md b/src/js-validator/node_modules/walk/README.md new file mode 100644 index 000000000..c323d8a68 --- /dev/null +++ b/src/js-validator/node_modules/walk/README.md @@ -0,0 +1,307 @@ +node-walk +==== + +nodejs walk implementation. + +This is somewhat of a port python's `os.walk`, but using Node.JS conventions. + + * EventEmitter + * Asynchronous + * Chronological (optionally) + * Built-in flow-control + * includes Synchronous version (same API as Asynchronous) + +As few file descriptors are opened at a time as possible. +This is particularly well suited for single hard disks which are not flash or solid state. + +Installation +---- + +```bash +npm install --save walk +``` + +Getting Started +==== + +```javascript +(function () { + "use strict"; + + var walk = require('walk') + , fs = require('fs') + , walker + ; + + walker = walk.walk("/tmp", options); + + walker.on("file", function (root, fileStats, next) { + fs.readFile(fileStats.name, function () { + // doStuff + next(); + }); + }); + + walker.on("errors", function (root, nodeStatsArray, next) { + next(); + }); + + walker.on("end", function () { + console.log("all done"); + }); +}()); +``` + +Common Events +----- + +All single event callbacks are in the form of `function (root, stat, next) {}`. + +All multiple event callbacks callbacks are in the form of `function (root, stats, next) {}`, except **names** which is an array of strings. + +All **error** event callbacks are in the form `function (root, stat/stats, next) {}`. +**`stat.error`** contains the error. + +* `names` +* `directory` +* `directories` +* `file` +* `files` +* `end` +* `nodeError` (`stat` failed) +* `directoryError` (`stat` succedded, but `readdir` failed) +* `errors` (a collection of any errors encountered) + + +A typical `stat` event looks like this: + +```javascript +{ dev: 16777223, + mode: 33188, + nlink: 1, + uid: 501, + gid: 20, + rdev: 0, + blksize: 4096, + ino: 49868100, + size: 5617, + blocks: 16, + atime: Mon Jan 05 2015 18:18:10 GMT-0700 (MST), + mtime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), + ctime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), + birthtime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), + name: 'README.md', + type: 'file' } +``` + +Advanced Example +==== + +Both Asynchronous and Synchronous versions are provided. + +```javascript +(function () { + "use strict"; + + var walk = require('walk') + , fs = require('fs') + , options + , walker + ; + + options = { + followLinks: false + // directories with these keys will be skipped + , filters: ["Temp", "_Temp"] + }; + + walker = walk.walk("/tmp", options); + + // OR + // walker = walk.walkSync("/tmp", options); + + walker.on("names", function (root, nodeNamesArray) { + nodeNamesArray.sort(function (a, b) { + if (a > b) return 1; + if (a < b) return -1; + return 0; + }); + }); + + walker.on("directories", function (root, dirStatsArray, next) { + // dirStatsArray is an array of `stat` objects with the additional attributes + // * type + // * error + // * name + + next(); + }); + + walker.on("file", function (root, fileStats, next) { + fs.readFile(fileStats.name, function () { + // doStuff + next(); + }); + }); + + walker.on("errors", function (root, nodeStatsArray, next) { + next(); + }); + + walker.on("end", function () { + console.log("all done"); + }); +}()); +``` + +### Sync + +Note: You **can't use EventEmitter** if you want truly synchronous walker +(although it's synchronous under the hood, it appears not to be due to the use of `process.nextTick()`). + +Instead **you must use `options.listeners`** for truly synchronous walker. + +Although the sync version uses all of the `fs.readSync`, `fs.readdirSync`, and other sync methods, +I don't think I can prevent the `process.nextTick()` that `EventEmitter` calls. + +```javascript +(function () { + "use strict"; + + var walk = require('walk') + , fs = require('fs') + , options + , walker + ; + + // To be truly synchronous in the emitter and maintain a compatible api, + // the listeners must be listed before the object is created + options = { + listeners: { + names: function (root, nodeNamesArray) { + nodeNamesArray.sort(function (a, b) { + if (a > b) return 1; + if (a < b) return -1; + return 0; + }); + } + , directories: function (root, dirStatsArray, next) { + // dirStatsArray is an array of `stat` objects with the additional attributes + // * type + // * error + // * name + + next(); + } + , file: function (root, fileStats, next) { + fs.readFile(fileStats.name, function () { + // doStuff + next(); + }); + } + , errors: function (root, nodeStatsArray, next) { + next(); + } + } + }; + + walker = walk.walkSync("/tmp", options); + + console.log("all done"); +}()); +``` + +API +==== + +Emitted Values + + * `on('XYZ', function(root, stats, next) {})` + + * `root` - the containing the files to be inspected + * *stats[Array]* - a single `stats` object or an array with some added attributes + * type - 'file', 'directory', etc + * error + * name - the name of the file, dir, etc + * next - no more files will be read until this is called + +Single Events - fired immediately + + * `end` - No files, dirs, etc left to inspect + + * `directoryError` - Error when `fstat` succeeded, but reading path failed (Probably due to permissions). + * `nodeError` - Error `fstat` did not succeeded. + * `node` - a `stats` object for a node of any type + * `file` - includes links when `followLinks` is `true` + * `directory` - **NOTE** you could get a recursive loop if `followLinks` and a directory links to its parent + * `symbolicLink` - always empty when `followLinks` is `true` + * `blockDevice` + * `characterDevice` + * `FIFO` + * `socket` + +Events with Array Arguments - fired after all files in the dir have been `stat`ed + + * `names` - before any `stat` takes place. Useful for sorting and filtering. + * Note: the array is an array of `string`s, not `stat` objects + * Note: the `next` argument is a `noop` + + * `errors` - errors encountered by `fs.stat` when reading ndes in a directory + * `nodes` - an array of `stats` of any type + * `files` + * `directories` - modification of this array - sorting, removing, etc - affects traversal + * `symbolicLinks` + * `blockDevices` + * `characterDevices` + * `FIFOs` + * `sockets` + +**Warning** beware of infinite loops when `followLinks` is true (using `walk-recurse` varient). + +Comparisons +==== + +Tested on my `/System` containing 59,490 (+ self) directories (and lots of files). +The size of the text output was 6mb. + +`find`: + time bash -c "find /System -type d | wc" + 59491 97935 6262916 + + real 2m27.114s + user 0m1.193s + sys 0m14.859s + +`find.js`: + +Note that `find.js` omits the start directory + + time bash -c "node examples/find.js /System -type d | wc" + 59490 97934 6262908 + + # Test 1 + real 2m52.273s + user 0m20.374s + sys 0m27.800s + + # Test 2 + real 2m23.725s + user 0m18.019s + sys 0m23.202s + + # Test 3 + real 2m50.077s + user 0m17.661s + sys 0m24.008s + +In conclusion node.js asynchronous walk is much slower than regular "find". + +LICENSE +=== + +`node-walk` is available under the following licenses: + + * MIT + * Apache 2 + +Copyright 2011 - Present AJ ONeal diff --git a/src/js-validator/node_modules/walk/lib/node-type-emitter.js b/src/js-validator/node_modules/walk/lib/node-type-emitter.js new file mode 100644 index 000000000..9a1e01c8b --- /dev/null +++ b/src/js-validator/node_modules/walk/lib/node-type-emitter.js @@ -0,0 +1,89 @@ +/*jshint strict:true node:true es5:true onevar:true laxcomma:true laxbreak:true*/ +(function () { + "use strict"; + + // "FIFO" isn't easy to convert to camelCase and back reliably + var isFnodeTypes = [ + "isFile", "isDirectory", "isSymbolicLink", "isBlockDevice", "isCharacterDevice", "isFIFO", "isSocket" + ], + fnodeTypes = [ + "file", "directory", "symbolicLink", "blockDevice", "characterDevice", "FIFO", "socket" + ], + fnodeTypesPlural = [ + "files", "directories", "symbolicLinks", "blockDevices", "characterDevices", "FIFOs", "sockets" + ]; + + + // + function createNodeGroups() { + var nodeGroups = {}; + fnodeTypesPlural.concat("nodes", "errors").forEach(function (fnodeTypePlural) { + nodeGroups[fnodeTypePlural] = []; + }); + return nodeGroups; + } + + + // Determine each file node's type + // + function sortFnodesByType(stat, fnodes) { + var i, isType; + + for (i = 0; i < isFnodeTypes.length; i += 1) { + isType = isFnodeTypes[i]; + if (stat[isType]()) { + stat.type = fnodeTypes[i]; + fnodes[fnodeTypesPlural[i]].push(stat); + return; + } + } + } + + + // Get the current number of listeners (which may change) + // Emit events to each listener + // Wait for all listeners to `next()` before continueing + // (in theory this may avoid disk thrashing) + function emitSingleEvents(emitter, path, stats, next, self) { + var num = 1 + emitter.listeners(stats.type).length + emitter.listeners("node").length; + + function nextWhenReady() { + num -= 1; + if (0 === num) { next.call(self); } + } + + emitter.emit(stats.type, path, stats, nextWhenReady); + emitter.emit("node", path, stats, nextWhenReady); + nextWhenReady(); + } + + + // Since the risk for disk thrashing among anything + // other than files is relatively low, all types are + // emitted at once, but all must complete before advancing + function emitPluralEvents(emitter, path, nodes, next, self) { + var num = 1; + + function nextWhenReady() { + num -= 1; + if (0 === num) { next.call(self); } + } + + fnodeTypesPlural.concat(["nodes", "errors"]).forEach(function (fnodeType) { + if (0 === nodes[fnodeType].length) { return; } + num += emitter.listeners(fnodeType).length; + emitter.emit(fnodeType, path, nodes[fnodeType], nextWhenReady); + }); + nextWhenReady(); + } + + module.exports = { + emitNodeType: emitSingleEvents, + emitNodeTypeGroups: emitPluralEvents, + isFnodeTypes: isFnodeTypes, + fnodeTypes: fnodeTypes, + fnodeTypesPlural: fnodeTypesPlural, + sortFnodesByType: sortFnodesByType, + createNodeGroups: createNodeGroups + }; +}()); diff --git a/src/js-validator/node_modules/walk/lib/walk-async-only.js b/src/js-validator/node_modules/walk/lib/walk-async-only.js new file mode 100644 index 000000000..41b30ca53 --- /dev/null +++ b/src/js-validator/node_modules/walk/lib/walk-async-only.js @@ -0,0 +1,93 @@ +(function () { + "use strict" + + // Array.prototype.forEachAsync(next, item, i, collection) + require('futures/forEachAsync'); + + function noop() {} + + var fs = require('fs'), + path = require('path'), + EventEmitter = require('events').EventEmitter, + TypeEmitter = require('./node-type-emitter'); + + // 2010-11-25 jorge@jorgechamorro.com + function create(pathname, cb) { + var emitter = new EventEmitter(), + q = [], + queue = [q], + curpath; + + function walk() { + fs.readdir(curpath, function(err, files) { + if (err) { + emitter.emit('directoryError', curpath, { error: err }, noop); + //emitter.emit('error', curpath, { error: err }); + } + // XXX bug was here. next() was omitted + if (!files || 0 == files.length) { + return next(); + } + + var fnodeGroups = TypeEmitter.createNodeGroups(); + + // TODO could allow user to selectively stat + // and don't stat if there are no stat listeners + emitter.emit('names', curpath, files, noop); + files.forEachAsync(function (cont, file) { + emitter.emit('name', curpath, file, noop); + fs.lstat(curpath + path.sep + file, function (err, stat) { + stat = stat || {}; + stat.name = file; + if (err) { + stat.error = err; + //emitter.emit('error', curpath, stat); + emitter.emit('nodeError', curpath, stat, noop); + fnodeGroups.errors.push(stat); + cont(); + } else { + TypeEmitter.sortFnodesByType(stat, fnodeGroups); + TypeEmitter.emitNodeType(emitter, curpath, stat, cont); + } + }); + }).then(function () { + if (fnodeGroups.errors.length) { + emitter.emit('errors', curpath, fnodeGroups.errors, noop); + } + TypeEmitter.emitNodeTypeGroups(emitter, curpath, fnodeGroups, function () { + var dirs = []; + fnodeGroups.directories.forEach(function (stat) { + dirs.push(stat.name); + }); + dirs.forEach(fullPath); + queue.push(q = dirs); + next(); + }); + }); + }); + } + + function next() { + if (q.length) { + curpath = q.pop(); + return walk(); + } + if (queue.length -= 1) { + q = queue[queue.length-1]; + return next(); + } + emitter.emit('end'); + } + + function fullPath(v,i,o) { + o[i]= [curpath, path.sep, v].join(''); + } + + curpath = pathname; + walk(); + + return emitter; + } + + module.exports = create; +}()); diff --git a/src/js-validator/node_modules/walk/lib/walk.js b/src/js-validator/node_modules/walk/lib/walk.js new file mode 100644 index 000000000..93c40ed26 --- /dev/null +++ b/src/js-validator/node_modules/walk/lib/walk.js @@ -0,0 +1,301 @@ +// Adapted from work by jorge@jorgechamorro.com on 2010-11-25 +(function () { + "use strict"; + + function noop() {} + + var fs = require('fs') + , forEachAsync = require('foreachasync').forEachAsync + , EventEmitter = require('events').EventEmitter + , TypeEmitter = require('./node-type-emitter') + , util = require('util') + , path = require('path') + ; + + function appendToDirs(stat) { + /*jshint validthis:true*/ + this.push(stat.name); + } + + function wFilesHandlerWrapper(items) { + /*jshint validthis:true*/ + this._wFilesHandler(noop, items); + } + + function Walker(pathname, options, sync) { + EventEmitter.call(this); + + var me = this + ; + + options = options || {}; + me._wStat = options.followLinks && 'stat' || 'lstat'; + me._wStatSync = me._wStat + 'Sync'; + me._wsync = sync; + me._wq = []; + me._wqueue = [me._wq]; + me._wcurpath = undefined; + me._wfilters = options.filters || []; + me._wfirstrun = true; + me._wcurpath = pathname; + + if (me._wsync) { + //console.log('_walkSync'); + me._wWalk = me._wWalkSync; + } else { + //console.log('_walkASync'); + me._wWalk = me._wWalkAsync; + } + + options.listeners = options.listeners || {}; + Object.keys(options.listeners).forEach(function (event) { + var callbacks = options.listeners[event] + ; + + if ('function' === typeof callbacks) { + callbacks = [callbacks]; + } + + callbacks.forEach(function (callback) { + me.on(event, callback); + }); + }); + + me._wWalk(); + } + + // Inherits must come before prototype additions + util.inherits(Walker, EventEmitter); + + Walker.prototype._wLstatHandler = function (err, stat) { + var me = this + ; + + stat = stat || {}; + stat.name = me._wcurfile; + + if (err) { + stat.error = err; + //me.emit('error', curpath, stat); + // TODO v3.0 (don't noop the next if there are listeners) + me.emit('nodeError', me._wcurpath, stat, noop); + me._wfnodegroups.errors.push(stat); + me._wCurFileCallback(); + } else { + TypeEmitter.sortFnodesByType(stat, me._wfnodegroups); + // NOTE: wCurFileCallback doesn't need thisness, so this is okay + TypeEmitter.emitNodeType(me, me._wcurpath, stat, me._wCurFileCallback, me); + } + }; + Walker.prototype._wFilesHandler = function (cont, file) { + var statPath + , me = this + ; + + + me._wcurfile = file; + me._wCurFileCallback = cont; + me.emit('name', me._wcurpath, file, noop); + + statPath = me._wcurpath + path.sep + file; + + if (!me._wsync) { + // TODO how to remove this anony? + fs[me._wStat](statPath, function (err, stat) { + me._wLstatHandler(err, stat); + }); + return; + } + + try { + me._wLstatHandler(null, fs[me._wStatSync](statPath)); + } catch(e) { + me._wLstatHandler(e); + } + }; + Walker.prototype._wOnEmitDone = function () { + var me = this + , dirs = [] + ; + + me._wfnodegroups.directories.forEach(appendToDirs, dirs); + dirs.forEach(me._wJoinPath, me); + me._wqueue.push(me._wq = dirs); + me._wNext(); + }; + Walker.prototype._wPostFilesHandler = function () { + var me = this + ; + + if (me._wfnodegroups.errors.length) { + // TODO v3.0 (don't noop the next) + // .errors is an array of stats with { name: name, error: error } + me.emit('errors', me._wcurpath, me._wfnodegroups.errors, noop); + } + // XXX emitNodeTypes still needs refactor + TypeEmitter.emitNodeTypeGroups(me, me._wcurpath, me._wfnodegroups, me._wOnEmitDone, me); + }; + Walker.prototype._wReadFiles = function () { + var me = this + ; + + if (!me._wcurfiles || 0 === me._wcurfiles.length) { + return me._wNext(); + } + + // TODO could allow user to selectively stat + // and don't stat if there are no stat listeners + me.emit('names', me._wcurpath, me._wcurfiles, noop); + + if (me._wsync) { + me._wcurfiles.forEach(wFilesHandlerWrapper, me); + me._wPostFilesHandler(); + } else { + forEachAsync(me._wcurfiles, me._wFilesHandler, me).then(me._wPostFilesHandler); + } + }; + Walker.prototype._wReaddirHandler = function (err, files) { + var fnodeGroups = TypeEmitter.createNodeGroups() + , me = this + , parent + , child + ; + + me._wfnodegroups = fnodeGroups; + me._wcurfiles = files; + + // no error, great + if (!err) { + me._wReadFiles(); + return; + } + + // TODO path.sep + me._wcurpath = me._wcurpath.replace(/\/$/, ''); + + // error? not first run? => directory error + if (!me._wfirstrun) { + // TODO v3.0 (don't noop the next if there are listeners) + me.emit('directoryError', me._wcurpath, { error: err }, noop); + // TODO v3.0 + //me.emit('directoryError', me._wcurpath.replace(/^(.*)\/.*$/, '$1'), { name: me._wcurpath.replace(/^.*\/(.*)/, '$1'), error: err }, noop); + me._wReadFiles(); + return; + } + + // error? first run? => maybe a file, maybe a true error + me._wfirstrun = false; + + // readdir failed (might be a file), try a stat on the parent + parent = me._wcurpath.replace(/^(.*)\/.*$/, '$1'); + fs[me._wStat](parent, function (e, stat) { + + if (stat) { + // success + // now try stat on this as a child of the parent directory + child = me._wcurpath.replace(/^.*\/(.*)$/, '$1'); + me._wcurfiles = [child]; + me._wcurpath = parent; + } else { + // TODO v3.0 + //me.emit('directoryError', me._wcurpath.replace(/^(.*)\/.*$/, '$1'), { name: me._wcurpath.replace(/^.*\/(.*)/, '$1'), error: err }, noop); + // TODO v3.0 (don't noop the next) + // the original readdir error, not the parent stat error + me.emit('nodeError', me._wcurpath, { error: err }, noop); + } + + me._wReadFiles(); + }); + }; + Walker.prototype._wFilter = function () { + var me = this + , exclude + ; + + // Stop directories that contain filter keywords + // from continuing through the walk process + exclude = me._wfilters.some(function (filter) { + if (me._wcurpath.match(filter)) { + return true; + } + }); + + return exclude; + }; + Walker.prototype._wWalkSync = function () { + //console.log('walkSync'); + var err + , files + , me = this + ; + + try { + files = fs.readdirSync(me._wcurpath); + } catch(e) { + err = e; + } + + me._wReaddirHandler(err, files); + }; + Walker.prototype._wWalkAsync = function () { + //console.log('walkAsync'); + var me = this + ; + + // TODO how to remove this anony? + fs.readdir(me._wcurpath, function (err, files) { + me._wReaddirHandler(err, files); + }); + }; + Walker.prototype._wNext = function () { + var me = this + ; + + if (me._paused) { + return; + } + if (me._wq.length) { + me._wcurpath = me._wq.pop(); + while (me._wq.length && me._wFilter()) { + me._wcurpath = me._wq.pop(); + } + if (me._wcurpath && !me._wFilter()) { + me._wWalk(); + } else { + me._wNext(); + } + return; + } + me._wqueue.length -= 1; + if (me._wqueue.length) { + me._wq = me._wqueue[me._wqueue.length - 1]; + return me._wNext(); + } + + // To not break compatibility + //process.nextTick(function () { + me.emit('end'); + //}); + }; + Walker.prototype._wJoinPath = function (v, i, o) { + var me = this + ; + + o[i] = [me._wcurpath, path.sep, v].join(''); + }; + Walker.prototype.pause = function () { + this._paused = true; + }; + Walker.prototype.resume = function () { + this._paused = false; + this._wNext(); + }; + + exports.walk = function (path, opts) { + return new Walker(path, opts, false); + }; + + exports.walkSync = function (path, opts) { + return new Walker(path, opts, true); + }; +}()); diff --git a/src/js-validator/node_modules/walk/package.json b/src/js-validator/node_modules/walk/package.json new file mode 100644 index 000000000..113f5a645 --- /dev/null +++ b/src/js-validator/node_modules/walk/package.json @@ -0,0 +1,98 @@ +{ + "_args": [ + [ + "walk", + "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator" + ] + ], + "_from": "walk@latest", + "_id": "walk@2.3.9", + "_inCache": true, + "_installable": true, + "_location": "/walk", + "_npmUser": { + "email": "coolaj86@gmail.com", + "name": "coolaj86" + }, + "_npmVersion": "2.0.0", + "_phantomChildren": {}, + "_requested": { + "name": "walk", + "raw": "walk", + "rawSpec": "", + "scope": null, + "spec": "latest", + "type": "tag" + }, + "_requiredBy": [ + "#USER" + ], + "_resolved": "https://registry.npmjs.org/walk/-/walk-2.3.9.tgz", + "_shasum": "31b4db6678f2ae01c39ea9fb8725a9031e558a7b", + "_shrinkwrap": null, + "_spec": "walk", + "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator", + "author": { + "email": "coolaj86@gmail.com", + "name": "AJ ONeal" + }, + "bugs": { + "url": "https://github.com/coolaj86/node-walk/issues" + }, + "contributors": [], + "dependencies": { + "foreachasync": "^3.0.0" + }, + "description": "A node port of python's os.walk", + "devDependencies": {}, + "directories": { + "example": "examples", + "test": "test" + }, + "dist": { + "shasum": "31b4db6678f2ae01c39ea9fb8725a9031e558a7b", + "tarball": "https://registry.npmjs.org/walk/-/walk-2.3.9.tgz" + }, + "files": [ + "lib" + ], + "gitHead": "cccd13e0fc6847443e9dd8cab468a27213b068cf", + "homepage": "https://github.com/coolaj86/node-walk", + "keywords": [ + "fs", + "os", + "sys", + "util", + "walk", + "walkSync" + ], + "lib": ".", + "licenses": [ + { + "type": "MIT", + "url": "http://www.opensource.org/licenses/mit-license.php" + }, + { + "type": "Apache2", + "url": "http://opensource.org/licenses/apache2.0.php" + } + ], + "main": "./lib/walk.js", + "maintainers": [ + { + "name": "coolaj86", + "email": "coolaj86@gmail.com" + } + ], + "name": "walk", + "optionalDependencies": {}, + "readme": "ERROR: No README data found!", + "repository": { + "url": "git://github.com/coolaj86/node-walk.git" + }, + "scripts": { + "test": "./test/walk-test.sh" + }, + "url": "http://github.com/coolaj86/node-walk", + "version": "2.3.9" +} diff --git a/src/js-validator/package.json b/src/js-validator/package.json new file mode 100644 index 000000000..86ebe954c --- /dev/null +++ b/src/js-validator/package.json @@ -0,0 +1,11 @@ +{ + "name": "js-validator", + "version": "0.0.1", + "dependencies": { + + }, + + "scripts": { + "test": "mocha" + } +} diff --git a/src/js-validator/test-json/test-donor.json b/src/js-validator/test-json/test-donor.json new file mode 100644 index 000000000..38c215556 --- /dev/null +++ b/src/js-validator/test-json/test-donor.json @@ -0,0 +1,16 @@ +{ + "core" : { + "id": "d1", + "type": "sample" + }, + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + +} \ No newline at end of file diff --git a/src/js-validator/test-json/test-sample.json b/src/js-validator/test-json/test-sample.json new file mode 100644 index 000000000..a51fbf963 --- /dev/null +++ b/src/js-validator/test-json/test-sample.json @@ -0,0 +1,75 @@ +{ + "core": { + "validationState": "Valid", + "uuid": "28b6cc77-6426-4686-b838-f845683fb320", + "accession": null, + "submissionDate": { + "date": "2017-09-29T14:47:00.395Z" + }, + "updateDate": { + "date": "2017-09-29T14:47:50.724Z" + }, + "events": [ + { + "endState": "Validating", + "originalState": "Draft", + "submissionDate": { + "date": "2017-09-29T14:47:40.669+0000" + } + }, + { + "endState": "Valid", + "originalState": "Validating", + "submissionDate": { + "date": "2017-09-29T14:47:50.724+0000" + } + } + ] + }, + "name": "Q3_DEMO-Single cell mRNA-seq_MGH30_A01", + "organ": { + "text": "glioblastoma" + }, + "body_part": { + "text": "brain" + }, + "donor_id": "Q3_DEMO-donor_MGH30", + "donor": { + "species": { + "text": "Homo sapiens", + "ontology": 9606 + }, + "is_living": "yes", + "core": { + "validationState": "Valid", + "uuid": "d9180483-1121-4d62-ae1c-fde00ba701c8", + "accession": null, + "submissionDate": { + "date": "2017-09-29T14:47:00.377Z" + }, + "updateDate": { + "date": "2017-09-29T14:47:51.699Z" + }, + "events": [ + { + "endState": "Validating", + "originalState": "Draft", + "submissionDate": { + "date": "2017-09-29T14:47:40.663+0000" + } + }, + { + "endState": "Valid", + "originalState": "Validating", + "submissionDate": { + "date": "2017-09-29T14:47:51.699+0000" + } + } + ] + }, + "ncbi_taxon": 9606, + "id": "Q3_DEMO-donor_MGH30" + }, + "id": "Q3_DEMO-sample_SAMN02797092", + "protocols": [] +} \ No newline at end of file diff --git a/src/js-validator/test/validate_json.js b/src/js-validator/test/validate_json.js new file mode 100644 index 000000000..6da62741e --- /dev/null +++ b/src/js-validator/test/validate_json.js @@ -0,0 +1,100 @@ +var Ajv = require('ajv'); +var ajv = new Ajv({allErrors: true, + verbose : true, + meta: false, // optional, to prevent adding draft-06 meta-schema + extendRefs: true, // optional, current default is to 'fail', spec behaviour is to 'ignore' + unknownFormats: 'ignore', // optional, current default is true (fail) +}); + +var metaSchema = require('ajv/lib/refs/json-schema-draft-04.json'); +ajv.addMetaSchema(metaSchema); +ajv._opts.defaultMeta = metaSchema.id; + +// optional, using unversioned URI is out of spec, see https://github.com/json-schema-org/json-schema-spec/issues/216 +ajv._refs['http://json-schema.org/schema'] = 'http://json-schema.org/draft-04/schema'; + +// Optionally you can also disable keywords defined in draft-06 +ajv.removeKeyword('propertyNames'); +ajv.removeKeyword('contains'); +ajv.removeKeyword('const'); + + +var fs = require('fs'); +var path = require('path') + +var f = []; + +function fromDir(startPath,filter){ + if (!fs.existsSync(startPath)){ + console.log("no dir ",startPath); + return; + } + + var files=fs.readdirSync(startPath); + for(var i=0;i=0) { + console.log('-- found: ',filename); + f.push(filename) + }; + }; + return f; +}; + + +var jsonFiles = fromDir("../../../json_schema/", ".json"); + + + + + +function getCompiledSchemas(){ + + var schemas = [] + + for(var i=0; i< jsonFiles.length; i++){ + + if(jsonFiles[i].indexOf("analysis") == -1){ + var filename = jsonFiles[i]; + var schema = require(filename); + + if(schema.id === undefined){ + schema.id = filename + } + ajv.addSchema(schema); + schemas.push(schema) + + } + else{ + console.log("we don't want to look at " + jsonFiles[i]); + } + } + + var validate; + for(var j=0; j< schemas.length; j++){ + + validate = ajv.compile(schemas[j]); + console.log("Schema " + schemas[j].title + ".json is a valid json schema") + } + return validate; +} + + +var donor = require("../test-json/test-donor.json"); +var sample = require("../test-json/test-sample.json"); + +var validate = getCompiledSchemas(); + +test(donor); +test(sample); + +function test(data) { + var valid = validate(data); + if (valid) console.log('Valid!'); + else console.log('Invalid: ' + ajv.errorsText(validate.errors)); + +} \ No newline at end of file From 9267622d91e378309dc595fa3fd1c9679b6689d2 Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 26 Oct 2017 12:00:44 +0100 Subject: [PATCH 058/128] modified local_test function to work from directories --- src/schema_test_suite.py | 26 ++++++++++++++++---------- 1 file changed, 16 insertions(+), 10 deletions(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 0c07f9580..2453dfb50 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -3,6 +3,7 @@ import warnings import subprocess import os +import glob def get_json_from_file(filename): @@ -47,23 +48,28 @@ def recurse_through_errors(es, level = 0): and schema path until context is empty""" # Assuming blank context is a sufficient escape clause here. for e in es: - warnings.warn("***"*level + "subschema level " + str(level) + "\t".join([e.message, - "Path to error:" + str(e.absolute_schema_path)]) + "\n") + warnings.warn( + "***"*level + "subschema level " + str(level) + "\t".join([e.message, + "Path to error:" + str(e.absolute_schema_path)]) + "\n") if e.context: level += 1 recurse_through_errors(e.context, level = level) -def test_local(path_to_schema_dir, schema_file, instance_file): - """Tests a single instance against a single schema. +def test_local(path_to_schema_dir, schema_file, test_dir): + """Tests a instances in a test_folder against a single schema. Assumes all schema files in single dir. - path_to_schema_dir may be relative. - schema_file and instance_file may be local to schema dir or full path.""" + Assumes all *.json files in the test_dir should validate against the schema. + * path_to_schema_dir: Absolute or relative path to schema dir + * schema_file: schema file name + * test_dir: path to test directory (absolute or local to schema dir) + """ os.chdir(path_to_schema_dir) pwd = subprocess.check_output('pwd').decode("utf-8").rstrip() base_uri = "file://" + pwd + "/" sv = get_validator(schema_file, base_uri) - i = get_json_from_file(instance_file) - print("Testing: %s" % instance_file) - validate(sv, i) - + test_files = glob.glob(pathname=test_dir + '/*.json') + for instance_file in test_files: + i = get_json_from_file(instance_file) + print("Testing: %s" % instance_file) + validate(sv, i) From 8949ab21682583bb0b92e29698675e42cdc0d22b Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Thu, 26 Oct 2017 12:01:26 +0100 Subject: [PATCH 059/128] Moved some files around --- .../sample/sample-test-current.json | 0 src/js-validator/test-json/test-donor.json | 16 ---------------- src/js-validator/test/validate_json.js | 4 ++-- 3 files changed, 2 insertions(+), 18 deletions(-) rename src/js-validator/test-json/test-sample.json => schema_tests/sample/sample-test-current.json (100%) delete mode 100644 src/js-validator/test-json/test-donor.json diff --git a/src/js-validator/test-json/test-sample.json b/schema_tests/sample/sample-test-current.json similarity index 100% rename from src/js-validator/test-json/test-sample.json rename to schema_tests/sample/sample-test-current.json diff --git a/src/js-validator/test-json/test-donor.json b/src/js-validator/test-json/test-donor.json deleted file mode 100644 index 38c215556..000000000 --- a/src/js-validator/test-json/test-donor.json +++ /dev/null @@ -1,16 +0,0 @@ -{ - "core" : { - "id": "d1", - "type": "sample" - }, - "donor" : { - "is_living": true, - "life_stage": "adult", - "species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } - }, - "ncbi_taxon_id": 9606 - -} \ No newline at end of file diff --git a/src/js-validator/test/validate_json.js b/src/js-validator/test/validate_json.js index 6da62741e..b5c9ab9f2 100644 --- a/src/js-validator/test/validate_json.js +++ b/src/js-validator/test/validate_json.js @@ -84,8 +84,8 @@ function getCompiledSchemas(){ } -var donor = require("../test-json/test-donor.json"); -var sample = require("../test-json/test-sample.json"); +var donor = require("../../../schema_tests/sample/donor_test1.json"); +var sample = require("../../../schema_tests/sample/sample-test-current.json"); var validate = getCompiledSchemas(); From 3b67ff8c7502ee56cd864692c33d5585fe067b7a Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 26 Oct 2017 13:56:16 +0200 Subject: [PATCH 060/128] Update 10x_pbmc8k_sample_bundle.json --- schema_test_files/10x_pbmc8k_sample_bundle.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/schema_test_files/10x_pbmc8k_sample_bundle.json b/schema_test_files/10x_pbmc8k_sample_bundle.json index a37573ad7..eac118891 100644 --- a/schema_test_files/10x_pbmc8k_sample_bundle.json +++ b/schema_test_files/10x_pbmc8k_sample_bundle.json @@ -43,6 +43,6 @@ }, "ncbi_taxon_id": 9606 }, - "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1"git add + "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1" } -] \ No newline at end of file +] From df061dabd47365c2cd734349ab0e668299f34efc Mon Sep 17 00:00:00 2001 From: daniwelter Date: Thu, 26 Oct 2017 13:06:12 +0100 Subject: [PATCH 061/128] Update donor.json Corrected smoking_history to alcohol_history as smoking was present twice and once was obviously alcohol --- json_schema/donor.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index b0b0c411e..344d40f68 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -22,7 +22,7 @@ "year" ] }, - "smoking_history": { + "alcohol_history": { "description": "Number of drinks consumed on a typical day", "type": "string" }, From 8f0dfc74fffa7b60d2b8e17c1b5b3e58592cdcc0 Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 30 Oct 2017 09:09:39 +0000 Subject: [PATCH 062/128] Added derivation_protocols property to sample_ingest.json --- json_schema/sample_ingest.json | 7 +++++++ schema_tests/sample/{ => fail}/sample-test-current.json | 0 schema_tests/sample/{ => pass}/donor_test1.json | 0 3 files changed, 7 insertions(+) rename schema_tests/sample/{ => fail}/sample-test-current.json (100%) rename schema_tests/sample/{ => pass}/donor_test1.json (100%) diff --git a/json_schema/sample_ingest.json b/json_schema/sample_ingest.json index bdb58fefc..06e6d38a7 100644 --- a/json_schema/sample_ingest.json +++ b/json_schema/sample_ingest.json @@ -15,6 +15,13 @@ }, "derived_from" : { "type": "string" + }, + "derivation_protocols": { + "items": { + "$ref": "protocol.json", + "description": "An array of protocols used in derivation of this sample." + }, + "type": "array" } }, "required": [ diff --git a/schema_tests/sample/sample-test-current.json b/schema_tests/sample/fail/sample-test-current.json similarity index 100% rename from schema_tests/sample/sample-test-current.json rename to schema_tests/sample/fail/sample-test-current.json diff --git a/schema_tests/sample/donor_test1.json b/schema_tests/sample/pass/donor_test1.json similarity index 100% rename from schema_tests/sample/donor_test1.json rename to schema_tests/sample/pass/donor_test1.json From 64a63bd14248c3dd59e86a7a6dfb2cf505d9475c Mon Sep 17 00:00:00 2001 From: dosumis Date: Mon, 30 Oct 2017 09:12:17 +0000 Subject: [PATCH 063/128] Added directory structure and script to automate testing. More work needed to work with pass vs fail tests cleanly & to put this into a test framework for travis integration. --- schema_tests/README.md | 15 ++++++ schema_tests/conf.json | 4 ++ .../sample/pass/10x_pbmc8k_donor_0.json | 14 ++++++ .../sample/pass/10x_pbmc8k_sample_0.json | 16 +++++++ .../pass/10x_pbmc8k_sample_bundle.json | 48 +++++++++++++++++++ .../pass/10x_pbmc8k_donor_0-ingest.json | 21 ++++++++ .../pass/10x_pbmc8k_sample_0-ingest.json | 24 ++++++++++ src/schema_test_suite.py | 3 +- src/test.py | 10 ++++ 9 files changed, 154 insertions(+), 1 deletion(-) create mode 100644 schema_tests/README.md create mode 100644 schema_tests/conf.json create mode 100644 schema_tests/sample/pass/10x_pbmc8k_donor_0.json create mode 100644 schema_tests/sample/pass/10x_pbmc8k_sample_0.json create mode 100644 schema_tests/sample_bundle/pass/10x_pbmc8k_sample_bundle.json create mode 100644 schema_tests/sample_ingest/pass/10x_pbmc8k_donor_0-ingest.json create mode 100644 schema_tests/sample_ingest/pass/10x_pbmc8k_sample_0-ingest.json create mode 100644 src/test.py diff --git a/schema_tests/README.md b/schema_tests/README.md new file mode 100644 index 000000000..6d1d89d3e --- /dev/null +++ b/schema_tests/README.md @@ -0,0 +1,15 @@ +## Schema test files + +* For each schema to be tested: + * Add a directory to this folder named for the schema. + - e.g. to test sample.json, add a directory called 'sample'. + + * Add the name of the schema to conf.json + * Under this add a directory called 'pass' (for all instances that are meant + to pass), and a directory called 'fail' (for all instances that are meant + to fail). Any files with the .json extension in these directories will be + tested against the relevant schema. + + + + This behavior relies on /src/test.py. \ No newline at end of file diff --git a/schema_tests/conf.json b/schema_tests/conf.json new file mode 100644 index 000000000..f799166fc --- /dev/null +++ b/schema_tests/conf.json @@ -0,0 +1,4 @@ +{ "schemas_to_test": ["sample", + "sample_ingest", + "sample_bundle"] +} \ No newline at end of file diff --git a/schema_tests/sample/pass/10x_pbmc8k_donor_0.json b/schema_tests/sample/pass/10x_pbmc8k_donor_0.json new file mode 100644 index 000000000..b4ae3611c --- /dev/null +++ b/schema_tests/sample/pass/10x_pbmc8k_donor_0.json @@ -0,0 +1,14 @@ +{ + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + +} \ No newline at end of file diff --git a/schema_tests/sample/pass/10x_pbmc8k_sample_0.json b/schema_tests/sample/pass/10x_pbmc8k_sample_0.json new file mode 100644 index 000000000..f61b1471d --- /dev/null +++ b/schema_tests/sample/pass/10x_pbmc8k_sample_0.json @@ -0,0 +1,16 @@ +{ + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } +} \ No newline at end of file diff --git a/schema_tests/sample_bundle/pass/10x_pbmc8k_sample_bundle.json b/schema_tests/sample_bundle/pass/10x_pbmc8k_sample_bundle.json new file mode 100644 index 000000000..eac118891 --- /dev/null +++ b/schema_tests/sample_bundle/pass/10x_pbmc8k_sample_bundle.json @@ -0,0 +1,48 @@ +[ + { + "core": { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0888697" + }, + "content": { + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism": { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } + } + }, + { + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0999697" + }, + "content" : { + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + }, + "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1" + } +] diff --git a/schema_tests/sample_ingest/pass/10x_pbmc8k_donor_0-ingest.json b/schema_tests/sample_ingest/pass/10x_pbmc8k_donor_0-ingest.json new file mode 100644 index 000000000..0a949b1f5 --- /dev/null +++ b/schema_tests/sample_ingest/pass/10x_pbmc8k_donor_0-ingest.json @@ -0,0 +1,21 @@ +{ + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0999697" + }, + "content" : { + "id": "d1", + "type": "donor", + "donor" : { + "is_living": true, + "life_stage": "adult", + "species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } + }, + "ncbi_taxon_id": 9606 + } +} \ No newline at end of file diff --git a/schema_tests/sample_ingest/pass/10x_pbmc8k_sample_0-ingest.json b/schema_tests/sample_ingest/pass/10x_pbmc8k_sample_0-ingest.json new file mode 100644 index 000000000..a7bba3c92 --- /dev/null +++ b/schema_tests/sample_ingest/pass/10x_pbmc8k_sample_0-ingest.json @@ -0,0 +1,24 @@ +{ + "core" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0888697" + }, + "content" : { + "id": "s1", + "type": "sample_from_organism", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "sample_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + }, + "donor_id": "d1" + } + } +} \ No newline at end of file diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 2453dfb50..9f0334f88 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -57,7 +57,7 @@ def recurse_through_errors(es, level = 0): def test_local(path_to_schema_dir, schema_file, test_dir): - """Tests a instances in a test_folder against a single schema. + """Tests all instances in a test_folder against a single schema. Assumes all schema files in single dir. Assumes all *.json files in the test_dir should validate against the schema. * path_to_schema_dir: Absolute or relative path to schema dir @@ -69,6 +69,7 @@ def test_local(path_to_schema_dir, schema_file, test_dir): base_uri = "file://" + pwd + "/" sv = get_validator(schema_file, base_uri) test_files = glob.glob(pathname=test_dir + '/*.json') + #print("Found test files: %s in %s" % (str(test_files), test_dir)) for instance_file in test_files: i = get_json_from_file(instance_file) print("Testing: %s" % instance_file) diff --git a/src/test.py b/src/test.py new file mode 100644 index 000000000..3635a48d5 --- /dev/null +++ b/src/test.py @@ -0,0 +1,10 @@ +from schema_test_suite import test_local, get_json_from_file + +path_to_schemas = '../json_schema' +path_to_test = '../schema_tests/' +schemas_to_test = get_json_from_file(path_to_test + "conf.json")['schemas_to_test'] + +for s in schemas_to_test: + test_local(path_to_schema_dir = path_to_schemas , + schema_file = s + '.json', + test_dir = path_to_test + s + '/pass/') \ No newline at end of file From 2ea13588a442363fceb294047d682dfa422c8007 Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 31 Oct 2017 13:10:46 +0000 Subject: [PATCH 064/128] Converted test.py to config based on dir names. --- src/schema_test_suite.py | 18 +++++++++++------- src/test.py | 15 ++++++++++++++- 2 files changed, 25 insertions(+), 8 deletions(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 9f0334f88..56dbbb25c 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -6,8 +6,11 @@ import glob -def get_json_from_file(filename): - f = open(filename, 'r') +def get_json_from_file(filename, warn = False): + """Loads json from a file. + Optionally specify warn = True to warn, rather than + fail if file not found.""" + f = open(filename, 'r') return json.loads(f.read()) def get_validator(filename, base_uri = ''): @@ -15,15 +18,16 @@ def get_validator(filename, base_uri = ''): Check whether it's a valid schema; Return a Draft4Validator object. Optionally specify a base URI for relative path - resolution of JSON pointers. This is especially useful - for local resolution via base_uri of form file://{some_path}/ + resolution of JSON pointers (This is especially useful + for local resolution via base_uri of form file://{some_path}/) """ + schema = get_json_from_file(filename) try: - # Check schema via class method call. - Draft4Validator.check_schema(schema) # IDE complaining but seems to work. + # Check schema via class method call. Works, despite IDE complaining + Draft4Validator.check_schema(schema) print("Schema %s is valid" % filename) - except SchemaError: + except SchemaError: raise if base_uri: resolver = RefResolver(base_uri = base_uri, diff --git a/src/test.py b/src/test.py index 3635a48d5..d36a7d96c 100644 --- a/src/test.py +++ b/src/test.py @@ -1,9 +1,22 @@ from schema_test_suite import test_local, get_json_from_file +import re +import os +# Could move these into config path_to_schemas = '../json_schema' path_to_test = '../schema_tests/' -schemas_to_test = get_json_from_file(path_to_test + "conf.json")['schemas_to_test'] +# Assume all dir in test directory not +# beginning with a '.' are the names of schemas to test. +# (Note - maybe simpler to use glob?) +dtree = list(os.walk(top = path_to_test)) +dlist = dtree[0][1] +schemas_to_test = [] +for d in dlist: + if not re.match('\..+', d): + schemas_to_test.append(d) + +valid = True for s in schemas_to_test: test_local(path_to_schema_dir = path_to_schemas , schema_file = s + '.json', From 62504e366197f4535e9fef0b7738784e210840c9 Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 31 Oct 2017 14:24:33 +0000 Subject: [PATCH 065/128] Sample.json composition scheme now follows new agreed pattern for v4 --- ..._line.json => immortalized_cell_line.json} | 0 json_schema/sample.json | 72 +++++++++++-------- ...anism.json => specimen_from_organism.json} | 0 3 files changed, 43 insertions(+), 29 deletions(-) rename json_schema/{cell_line.json => immortalized_cell_line.json} (100%) rename json_schema/{sample_from_organism.json => specimen_from_organism.json} (100%) diff --git a/json_schema/cell_line.json b/json_schema/immortalized_cell_line.json similarity index 100% rename from json_schema/cell_line.json rename to json_schema/immortalized_cell_line.json diff --git a/json_schema/sample.json b/json_schema/sample.json index b97a8bd61..5ccb0df06 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,5 +1,5 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "Information about a biosample." , "additionalProperties" : false, "patternProperties": { @@ -9,50 +9,67 @@ } }, + "allOf" : [{"required" : ["id", "type", "ncbi_taxon_id"]}], + "oneOf" : [{"required" : ["donor_description"], "properties": { "type": { "enum" : ["donor"]}}}, + {"required" : ["immortalized_cell_line_description"], "properties": { "type": { "enum" : ["immortalized_cell_line"]}}}, + {"required" : ["cell_suspension_description"], "properties": { "type": { "enum" : ["cell_suspension"]}}}, + {"required" : ["organoid_description"], "properties": { "type": { "enum" : ["organoid"]}}}, + {"required" : ["primary_cell_line_description"], "properties": { "type": { "enum" : ["primary_cell_line"]}}}, + {"required" : ["specimen_from_organism_description"], "properties": { "type": { "enum" : ["specimen_from_organism"]}}} + ], + "properties": { - "schema_url": { - "description": "URL of json schema document that validates this version of this module.", - "type": "string" - }, - "schema_version": { - "description": "Version number in major.minor.patch format. Example 3.2.4. Major version changes likely require change to software. Patches are just documentation changes", - "pattern": "^...*..*$", - "type": "string" - }, + "core": { "$ref": "core.json" }, "type": { "description": "The name of the core metadata entity type.", "enum": [ - "donor", - "sample_from_organism", - "cell_suspension" + "donor", + "specimen_from_organism", + "cell_suspension", + "organoid", + "immortalized_cell_line", + "primary_cell_line" ] }, - "id":{ - "description": "A local identifier for the entity (e.g. sample, assay, protocol, file, analysis).", + "sample_id":{ + "description": "A local identifier for the sample. Should be unique in the context of the submission (project).", "type": "string" }, "name": { - "description": "A short descriptive name for the entity (e.g. sample, assay, protocol, file, analysis). Should be enough to distinguish it from other samples in the project.", - "type": "string" - }, - "comment": { - "description": "A free text commment capturing any relevant information not captured by other fields.", + "description": "A short descriptive name for the entity sample.", "type": "string" }, "description": { - "description": "A general description of the item being submitted (e.g. sample, assay, protocol, file, analysis).", + "description": "A general description of the sample.", "type": "string" }, - "donor" : { + "donor_description" : { "$ref": "donor.json" }, - "sample_from_organism" : { - "$ref": "sample_from_organism.json" + "specimen_from_organism_description" : { + "$ref": "specimen_from_organism.json" + }, + "immortalized_cell_line_description" : { + "$ref": "immortalized_cell_line.json" }, + "primary_cell_line_description" : { + "$ref": "primary_cell_line.json" + }, + "organoid_description" : { + "$ref": "organoid.json" + }, + "cell_suspension_description" : { + "$ref": "cell_suspension.json" + }, + "ncbi_taxon_id" : { "description": "Taxon id from NCBI", "type" : "integer" }, + "genus_species": { + "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", + "$ref": "ontology.json" + }, "supplementary_files": { "description": "Sample level supplementary files.", "items": { @@ -85,8 +102,5 @@ } } } - }, - "allOf" : [{"required" : ["id", "type"]}], - "oneOf" : [{"required" : ["donor"]}, {"required" : ["sample_from_organism"]}] - -} \ No newline at end of file + } +} diff --git a/json_schema/sample_from_organism.json b/json_schema/specimen_from_organism.json similarity index 100% rename from json_schema/sample_from_organism.json rename to json_schema/specimen_from_organism.json From 4d77d15e4c8831d5ee7148dd1bdb74339ae2714b Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 31 Oct 2017 15:04:43 +0000 Subject: [PATCH 066/128] Changing balance of content between sample & donor/core --- json_schema/core.json | 20 ++------------------ json_schema/donor.json | 7 +------ 2 files changed, 3 insertions(+), 24 deletions(-) diff --git a/json_schema/core.json b/json_schema/core.json index 03bf18dd8..d38cc234c 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -21,25 +21,9 @@ "file", "analysis" ] - }, - "id":{ - "description": "A local identifier for the entity (e.g. sample, assay, protocol, file, analysis).", - "type": "string" - }, - "name": { - "description": "A short descriptive name for the entity (e.g. sample, assay, protocol, file, analysis). Should be enough to distinguish it from other samples in the project.", - "type": "string" - }, - "comment": { - "description": "A free text commment capturing any relevant information not captured by other fields.", - "type": "string" - }, - "description": { - "description": "A general description of the item being submitted (e.g. sample, assay, protocol, file, analysis).", - "type": "string" } }, "required": [ - "type","id" - ] + "type" + ] } diff --git a/json_schema/donor.json b/json_schema/donor.json index 929067fdb..f624a74ea 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -101,10 +101,6 @@ "smoking_history": { "description": "Estimated # of cigarattes smoked per day and for how many years", "type": "string" - }, - "genus_species": { - "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", - "$ref": "ontology.json" }, "strain": { "description": "Mouse inbred strain. Example C57BL/6.", @@ -121,8 +117,7 @@ } }, "required": [ - "species", "is_living" - + "is_living" ], "title": "donor", "type": "object" From 0bd04406f099f9cf1bc8dc3a3b7ef57267ed5fe2 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 31 Oct 2017 16:25:15 +0000 Subject: [PATCH 067/128] Added primary_cell_line.json as per #45 plus some clean-up and standardisation of json fields across files, incl moving core properties id, name and description into from core.json into core entities --- json_schema/analysis.json | 9 +++++ json_schema/assay.json | 10 ++++- json_schema/cell_suspension.json | 3 +- json_schema/death.json | 2 +- json_schema/donor.json | 2 +- json_schema/immortalized_cell_line.json | 4 +- .../ontology_json/body_part_ontology.json | 2 +- json_schema/organoid.json | 1 + json_schema/primary_cell_line.json | 40 +++++++++++++++++++ json_schema/project.json | 18 ++++++--- json_schema/protocol.json | 19 ++++++--- json_schema/sample.json | 6 +-- json_schema/specimen_from_organism.json | 4 +- json_schema/state_of_specimen.json | 2 +- 14 files changed, 98 insertions(+), 24 deletions(-) create mode 100644 json_schema/primary_cell_line.json diff --git a/json_schema/analysis.json b/json_schema/analysis.json index 171e9834e..6aad29c46 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -15,6 +15,14 @@ "description" : "ID give to the analysis run which refers back to the analysis instance in the green box.", "type" : "number" }, + "name": { + "description": "A short descriptive name for the entity analysis.", + "type": "string" + }, + "description": { + "description": "A general description of the analysis.", + "type": "string" + }, "computational_method" : { "description" : "A URI to a versioned workflow and versioned execution environment in a GA4GH compliant repository.", "type" : "uri" @@ -126,6 +134,7 @@ "type" : "object" } }, + "title" : "analysis", "required" : [ "timestamp_start_utc", "timestamp_stop_utc", diff --git a/json_schema/assay.json b/json_schema/assay.json index 3fdaac50e..cad58f5ae 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -8,9 +8,17 @@ "description": "type and schema for this object", "$ref": "core.json" }, - "id": { + "assay_id": { "description": "unique id for this assay", "type": "string" + }, + "name": { + "description": "A short descriptive name for the entity assay.", + "type": "string" + }, + "description": { + "description": "A general description of the assay.", + "type": "string" }, "imaging": { "description": "Information on image based RNA quantification assays", diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index facafa28d..77abeb5fe 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "", + "description": "Information about the cell suspension derived from the collected or cultured specimen", "properties": { "sample_type": { "type": "string", @@ -27,6 +27,7 @@ "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" } }, + "title" : "cell_suspension", "required":[ "sample_type" ] diff --git a/json_schema/death.json b/json_schema/death.json index c651f7b1a..55ab3e0d3 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -2,7 +2,7 @@ "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, - "description": "death schema generate by tagSchemaToJson from death", + "description": "Information relating to the death of the donor", "properties": { "cause_of_death": { "description": "Cause of death from death report for human donor, from research lab for mouse", diff --git a/json_schema/donor.json b/json_schema/donor.json index f624a74ea..d61e76286 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "donor schema generate by tagSchemaToJson from donor", + "description": "Information about the donor from which a specimen was collected", "additionalProperties" : false, "properties": { "age": { diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index 0275bd027..0466082e8 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "Information about the cell line used in the sample", + "description": "Information about the immortalized cell line used in the sample", "properties": { "sample_type": { "type": "string", @@ -51,6 +51,6 @@ "sample_type", "name" ], - "title": "cell_line", + "title": "immortalised_cell_line", "type": "object" } diff --git a/json_schema/ontology_json/body_part_ontology.json b/json_schema/ontology_json/body_part_ontology.json index e59112045..99adbd7cd 100644 --- a/json_schema/ontology_json/body_part_ontology.json +++ b/json_schema/ontology_json/body_part_ontology.json @@ -15,6 +15,6 @@ "required": [ "text" ], - "title": "ontology", + "title": "body_part_ontology", "type": "object" } diff --git a/json_schema/organoid.json b/json_schema/organoid.json index f4a50d668..a1be665af 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -11,6 +11,7 @@ "$ref": "ontology.json" } }, + "title" : "organoid", "required":[ "sample_type" ] diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json new file mode 100644 index 000000000..0dcc808dc --- /dev/null +++ b/json_schema/primary_cell_line.json @@ -0,0 +1,40 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "Information about the primary cell line used in the sample", + "properties": { + "sample_type": { + "type": "string", + "enum": ["cell line"] + }, + "cell_type": { + "description": "what cell type was the line derived from, CLO ontology usually", + "$ref": "ontology_json/cell_type_ontology.json" + }, + "date_established": { + "description": "when was the cell line established", + "format": "date-time", + "type": "string" + }, + "disease": { + "description": "text describing disease association, preferable a disease found in EFO", + "$ref": "ontology_json/disease_ontology.json" + }, + "passage_number": { + "description": "how many passages the cell line as been through", + "maximum": 1000, + "minimum": 0, + "type": "integer" + }, + "cell_cycle": { + "$ref": "ontology.json", + "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." + } + }, + "required":[ + "sample_type", + "name" + ], + "title": "primary_cell_line", + "type": "object" +} diff --git a/json_schema/project.json b/json_schema/project.json index 32e00fd80..bb137cd64 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -10,6 +10,18 @@ } }, "properties": { + "project_id":{ + "description": "A unique ID for project", + "type": "string" + }, + "name": { + "description": "A short descriptive name for the entity project.", + "type": "string" + }, + "description": { + "description": "A general description of the project.", + "type": "string" + }, "array_express_investigation": { "description": "EBI Array Express investigation accession", "pattern": "^E-....-.*$" @@ -48,11 +60,7 @@ "description": "NCBI GEO series accession", "pattern": "^GSE.*$", "type": "string" - }, - "id": { - "description": "A unique ID for project", - "type": "string" - }, + }, "ncbi_bioproject": { "description": "NCBI bioproject ID", "pattern": "^PRJNA.*$", diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 7c0d15f79..087f15e7c 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -4,6 +4,18 @@ "definitions": {}, "description": "protocol schema generate by tagSchemaToJson from protocol", "properties": { + "protocol_id":{ + "description": "Unique ID for this protocol.", + "type": "string" + }, + "name": { + "description": "A short descriptive name for the entity protocol.", + "type": "string" + }, + "description": { + "description": "A general description of the protocol.", + "type": "string" + }, "batch_number": { "description": "the batch of kit used", "type": "string" @@ -15,12 +27,7 @@ "description": { "description": "a text based desciption about the protocol", "type": "string" - }, - "id": { - "description": "Unique ID for this protocol.", - "pattern": "^.*-....-.*$", - "type": "string" - }, + }, "pdf": { "description": "A pdf containing the details of the protocol", "pattern": "^.*.pdf$", diff --git a/json_schema/sample.json b/json_schema/sample.json index 5ccb0df06..90204b248 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,7 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "Information about a biosample." , - "additionalProperties" : false, + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", "additionalProperties" : false, "patternProperties": { "^characteristics_.*$": { "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", @@ -102,5 +101,6 @@ } } } - } + }, + "title": "sample" } diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 134977813..ceae9c858 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -1,8 +1,8 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", - "title": "sample from organism", + "description": "Information about the specimen that was extracted from the donor organism", + "title": "specimen_from_organism", "type": "object", "properties": { "body_part": { diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 4e2a0458f..fcf5a2bbc 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -49,6 +49,6 @@ "type": "integer" } }, - "title": "preservation", + "title": "state_of_specimen", "type": "object" } From b4b2e31107e44a3f1ee5b6e9e7e7e0b2b5c33738 Mon Sep 17 00:00:00 2001 From: dosumis Date: Tue, 31 Oct 2017 16:56:20 +0000 Subject: [PATCH 068/128] First draft of ontology schema extension, implmented in two ontology subschema files. --- json_meta_schema/ontology_meta.json | 35 +++++++++++++++++ json_meta_schema/ontology_meta.yaml | 38 +++++++++++++++++++ .../ontology_json/body_part_ontology.json | 9 ++++- .../ontology_json/cell_type_ontology.json | 13 +++++-- 4 files changed, 91 insertions(+), 4 deletions(-) create mode 100644 json_meta_schema/ontology_meta.json create mode 100644 json_meta_schema/ontology_meta.yaml diff --git a/json_meta_schema/ontology_meta.json b/json_meta_schema/ontology_meta.json new file mode 100644 index 000000000..fb544df31 --- /dev/null +++ b/json_meta_schema/ontology_meta.json @@ -0,0 +1,35 @@ +{ + "graph_restriction": { + "description": "A JSON schema extension field used to specify which ontology terms are valid for a\n field, based on their graph location. A graph consists of edges representing \n classification (subClassOf) and simple existential restrictions \n (e.g. eye subClassOf part_of some head). Graph location is specified via a list \n of objectProperties to follow and a list of grouping classes. \n All ontologies and OWL entities are specified using CURIEs. \n CURIE resolution depends on an extenal resolution service (e.g. identifiers.org) \n or JSON-LD mapping file. \n", + "type": "object", + "required": [ + "ontologies", + "relations", + "classes", + "include_self", + "direct" + ], + "additionalProperties": false, + "properties": { + "ontologies": { + "description": "A list of valid ontologies. Each ontology is specified using a CURIE.\n", + "type": "array", + "items": "string" + } + }, + "relations": { + "description": "A list of relations (object properties) to use for graph-based term grouping. Each property is specified using a CURIE. type: array Items: string \n" + }, + "classes": { + "description": "A list of grouping classes. Each class is specified using a CURIE\n type: array\n items: string \n" + }, + "include_self": { + "description": "A boolean allowing specification of whether the graph query should return the specified grouping classes(es).\n", + "type": "boolean" + }, + "direct": { + "description": "A bolean specifying return of all descendant classes (False) or direct child classes only (True).\n", + "type": "boolean" + } + } +} \ No newline at end of file diff --git a/json_meta_schema/ontology_meta.yaml b/json_meta_schema/ontology_meta.yaml new file mode 100644 index 000000000..47860c855 --- /dev/null +++ b/json_meta_schema/ontology_meta.yaml @@ -0,0 +1,38 @@ +graph_restriction: + description: > + A JSON schema extension field used to specify which ontology terms are valid for a + field, based on their graph location. A graph consists of edges representing + classification (subClassOf) and simple existential restrictions + (e.g. eye subClassOf part_of some head). Graph location is specified via a list + of objectProperties to follow and a list of grouping classes. + All ontologies and OWL entities are specified using CURIEs. + CURIE resolution depends on an extenal resolution service (e.g. identifiers.org) + or JSON-LD mapping file. + # Question: Should the mapping service or file be specified in schema? + type: object + required: [ontologies, relations, classes, include_self, direct] # we could potentially make relations optional if subClassOf-only is default. + additionalProperties: False + properties: + ontologies: + description: > + A list of valid ontologies. Each ontology is specified using a CURIE. + type: array + items: string + relations: + description: > + A list of relations (object properties) to use for graph-based term grouping. Each property is specified using a CURIE. + type: array + Items: string + classes: + description: > + A list of grouping classes. Each class is specified using a CURIE + type: array + items: string + include_self: + description: > + A boolean allowing specification of whether the graph query should return the specified grouping classes(es). + type: boolean + direct: + description: > + A bolean specifying return of all descendant classes (False) or direct child classes only (True). + type: boolean diff --git a/json_schema/ontology_json/body_part_ontology.json b/json_schema/ontology_json/body_part_ontology.json index e59112045..ed895e658 100644 --- a/json_schema/ontology_json/body_part_ontology.json +++ b/json_schema/ontology_json/body_part_ontology.json @@ -9,7 +9,14 @@ }, "ontology": { "description": "An optional ontology reference in format where prefix_ indicates which ontology", - "type": "string" + "type": "string", + "graph_restriction": { + "ontologies" : ["obo:uberon", "obo:efo"], + "classes": ["obo:UBERON_0000465"], + "relations": ["rdfs:subClassOf"], + "direct": false, + "include_self": true + } } }, "required": [ diff --git a/json_schema/ontology_json/cell_type_ontology.json b/json_schema/ontology_json/cell_type_ontology.json index 93c41b195..9b17220d9 100644 --- a/json_schema/ontology_json/cell_type_ontology.json +++ b/json_schema/ontology_json/cell_type_ontology.json @@ -4,12 +4,19 @@ "description": "A term that may be associated with a cell type-related ontology term", "properties": { "text": { - "description": "The text for the term as the user provides it.", + "description": "The name of a cell type supplied by a user.", "type": "string" }, "ontology": { - "description": "An optional ontology reference in format where prefix_ indicates which ontology", - "type": "string" + "description": "An ontology term identifier in the form prefix:accession", + "type": "string", + "graph_restriction": { + "ontologies" : ["obo:cl", "obo:efo"], + "classes": ["obo:CL_0000003"], + "relations": ["rdfs:subClassOf"], + "direct": false, + "include_self": true + } } }, "required": [ From bfc3a5ab9439541a71f857af0a66c660318a1207 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 09:51:33 +0000 Subject: [PATCH 069/128] Beautified field descriptions for protocol.json. --- json_schema/protocol.json | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 7c0d15f79..fe9919553 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -5,34 +5,34 @@ "description": "protocol schema generate by tagSchemaToJson from protocol", "properties": { "batch_number": { - "description": "the batch of kit used", + "description": "The batch number of the kit used.", "type": "string" }, "core": { - "description": "type and schema for this object", + "description": "Type and schema for this object.", "$ref": "core.json" }, "description": { - "description": "a text based desciption about the protocol", + "description": "A text-based description of the protocol.", "type": "string" }, "id": { - "description": "Unique ID for this protocol.", + "description": "A unique ID for this protocol.", "pattern": "^.*-....-.*$", "type": "string" }, "pdf": { - "description": "A pdf containing the details of the protocol", + "description": "The name of a PDF file containing the details of the protocol.", "pattern": "^.*.pdf$", "type": "string" }, "retail_name": { - "description": "the retail name of the kit used e.g SureCell WTA 3\u2032 Library Prep Kit", + "description": "The retail name of the kit used. e.g. TruSeq RNA Library Prep Kit v2.", "type": "string" }, "type": { "$ref": "ontology.json", - "description": "Type of protocol, ideally an EFO term" + "description": "Type of protocol. Ideally an EFO term." } }, "required": [ From 16572888b3fcaa24192e5834adf05a24958b2924 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 09:55:41 +0000 Subject: [PATCH 070/128] Beautified field descriptions for sample.json. --- json_schema/sample.json | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index e76a29cbf..974b08ec4 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -5,17 +5,17 @@ "description": "Information about a biosample." , "patternProperties": { "^characteristics_.*$": { - "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", "type": "string" } }, "properties": { "core": { "$ref": "core.json", - "description": "type and schema for this object" + "description": "Type and schema for this object." }, "id": { - "description": "A unique ID for this sample", + "description": "A unique ID for this sample.", "type": "string" }, "details": { @@ -30,12 +30,12 @@ "protocols": { "items": { "$ref": "protocol.json", - "description": "An array of protocol modules. Assay and project protocols reference this." + "description": "An array of protocol modules. Assay and project protocols reference this." }, "type": "array" }, "supplementary_files": { - "description": "Sample level supplementary files.", + "description": "A list of filenames of sample-level supplementary files.", "items": { "type": "string" }, @@ -47,20 +47,20 @@ "additionalProperties" : false, "properties": { "biosd_sample": { - "description": "EBI biosample ID", + "description": "An EBI BioSamples ID.", "type": "string" }, "ncbi_biosample": { - "description": "NCBI biosample ID", + "description": "An NCBI BioSample ID.", "type": "string" }, "geo_sample": { - "description": "NCBI GEO sample accession", + "description": "An NCBI GEO sample accession.", "pattern": "^GSM.*$", "type": "string" }, "ena_sample": { - "description": "European nucleotide archive sample ID", + "description": "A European Nucleotide Archive sample ID.", "pattern": "^ERS.*$", "type": "string" } From 2d0c9833cce01ed6c60a4900805b756dc5098922 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 09:59:17 +0000 Subject: [PATCH 071/128] Beautified field descriptions for assay.json. --- json_schema/assay.json | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index 3fdaac50e..e34a1a583 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -2,22 +2,22 @@ "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, - "description": "An assay contains Information relevant to how RNA expression levels were assayed or otherwise the sample was converted into digital information", + "description": "An assay contains information relevant to how a sample (in vivo) was converted into digital information (in silico).", "properties": { "core": { - "description": "type and schema for this object", + "description": "Type and schema for this object.", "$ref": "core.json" }, "id": { - "description": "unique id for this assay", + "description": "A unique ID for this assay.", "type": "string" }, "imaging": { - "description": "Information on image based RNA quantification assays", + "description": "Information on image-based RNA quantification assays.", "$ref": "imaging.json" }, "rna": { - "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", + "description": "Information about how a sample was prepared for the assay. e.g. how RNA was converted to cDNA.", "$ref": "rna.json" }, "seq": { @@ -25,7 +25,7 @@ "$ref": "seq.json" }, "single_cell": { - "description": "Contains information on single cell aspects of an assay.", + "description": "Information about single cell aspects of an assay.", "$ref": "single_cell.json" } }, From 71d568f5bb5d55bafb22ae0f377441b4c5a538a6 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 10:08:02 +0000 Subject: [PATCH 072/128] Beautified field descriptions for project.json. --- json_schema/project.json | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index 32e00fd80..91d301706 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -2,20 +2,20 @@ "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, - "description": "project schema generate by tagSchemaToJson from project", + "description": "Project schema generate by tagSchemaToJson from project.", "patternProperties": { "^characteristics_.*$": { - "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", "type": "string" } }, "properties": { "array_express_investigation": { - "description": "EBI Array Express investigation accession", + "description": "An EBI ArrayExpress investigation accession.", "pattern": "^E-....-.*$" }, "contributors": { - "description": "List of scientists contributing to project", + "description": "A list of people who contributed to project.", "items": { "$ref": "contact.json" }, @@ -23,38 +23,38 @@ }, "core": { "$ref": "core.json", - "description": "type and schema for this object" + "description": "Type and schema for this object." }, "ddjb_trace": { - "description": "Japanese trace archive project accession.", + "description": "A Japanese trace archive project accession.", "pattern": "^ERP.*$", "type": "string" }, "experimental_design": { "items": { "$ref": "ontology.json", - "description": "A short description of overall experiment type, such as \"single cell RNA sequencing.\"" + "description": "A short description of the experiment type. e.g. \"single cell RNA sequencing\"." }, "type": "array" }, "experimental_factor_name": { - "description": "A list of the factors that vary between samples in the experiment.", + "description": "A list of the factors that vary between samples in the experiment. e.g. time, disease state.", "items": { "type": "string" }, "type": "array" }, "geo_series": { - "description": "NCBI GEO series accession", + "description": "An NCBI GEO series accession.", "pattern": "^GSE.*$", "type": "string" }, "id": { - "description": "A unique ID for project", + "description": "A unique ID for project.", "type": "string" }, "ncbi_bioproject": { - "description": "NCBI bioproject ID", + "description": "An NCBI BioProject ID.", "pattern": "^PRJNA.*$", "type": "string" }, @@ -66,19 +66,19 @@ "type": "array" }, "related_projects": { - "description": "List of other projects that may be logically grouped with this one.", + "description": "A list of other projects that may be logically grouped with this one.", "items": { "type": "string" }, "type": "array" }, "sra_project": { - "description": "NCBI SRA project accession", + "description": "An NCBI SRA project accession.", "pattern": "^SRP.*$", "type": "string" }, "supplementary_files": { - "description": "Project level supplementary files such as experimental design documents, lab spreadsheets, manuscripts in preparation.", + "description": "A list filenames of project-level supplementary files. e.g. experimental design documents, lab spreadsheets, or manuscripts in preparation.", "items": { "type": "string" }, From 8355e6087a7f0ca268194d7e4e653e94fef93fcd Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 13:21:06 +0000 Subject: [PATCH 073/128] Beautified field descriptions for core.json. --- json_schema/core.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/json_schema/core.json b/json_schema/core.json index d38cc234c..b961ce724 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -1,13 +1,13 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "core object found in all modules", + "description": "Core object found in all modules.", "properties": { "schema_url": { - "description": "URL of json schema document that validates this version of this module.", + "description": "URL of JSON schema document that validates this version of this module.", "type": "string" }, "schema_version": { - "description": "Version number in major.minor.patch format. Example 3.2.4. Major version changes likely require change to software. Patches are just documentation changes", + "description": "Version number in major.minor.patch format. e.g. 3.2.4. Major version changes likely require changes to software. Minor version changes should not require software changes. Patches are just documentation changes.", "pattern": "^...*..*$", "type": "string" }, From 6bd47001e4729324924e5122601f573002b3d175 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 13:29:55 +0000 Subject: [PATCH 074/128] Beautified field descriptions for project.json. --- json_schema/project.json | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index bb137cd64..6c8072654 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -11,11 +11,11 @@ }, "properties": { "project_id":{ - "description": "A unique ID for project", + "description": "A unique ID for the project.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity project.", + "description": "A short descriptive name for the entity project. Does not need to be unique.", "type": "string" }, "description": { @@ -23,11 +23,11 @@ "type": "string" }, "array_express_investigation": { - "description": "EBI Array Express investigation accession", + "description": "An EBI ArrayExpress investigation accession.", "pattern": "^E-....-.*$" }, "contributors": { - "description": "List of scientists contributing to project", + "description": "List of people contributing to the project.", "items": { "$ref": "contact.json" }, @@ -45,24 +45,24 @@ "experimental_design": { "items": { "$ref": "ontology.json", - "description": "A short description of overall experiment type, such as \"single cell RNA sequencing.\"" + "description": "A short description of overall experiment type. e.g. \"single cell RNA sequencing.\"" }, "type": "array" }, "experimental_factor_name": { - "description": "A list of the factors that vary between samples in the experiment.", + "description": "A list of the factors that vary between samples in the experiment. e.g. \"time since collection\", \"preservation method\"", "items": { "type": "string" }, "type": "array" }, "geo_series": { - "description": "NCBI GEO series accession", + "description": "An NCBI GEO series accession.", "pattern": "^GSE.*$", "type": "string" }, "ncbi_bioproject": { - "description": "NCBI bioproject ID", + "description": "An NCBI BioProject ID.", "pattern": "^PRJNA.*$", "type": "string" }, @@ -74,19 +74,19 @@ "type": "array" }, "related_projects": { - "description": "List of other projects that may be logically grouped with this one.", + "description": "A list of other projects that may be logically grouped with this one.", "items": { "type": "string" }, "type": "array" }, "sra_project": { - "description": "NCBI SRA project accession", + "description": "An NCBI SRA project accession.", "pattern": "^SRP.*$", "type": "string" }, "supplementary_files": { - "description": "Project level supplementary files such as experimental design documents, lab spreadsheets, manuscripts in preparation.", + "description": "Project-level supplementary files. e.g. experimental design documents, lab spreadsheets, manuscripts in preparation.", "items": { "type": "string" }, From fce7c85c4bb7b3b899d7b5ba21f05284e3438b30 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 13:56:52 +0000 Subject: [PATCH 075/128] Beautified field descriptions for assay.json and sample.json. --- json_schema/assay.json | 14 +++++++------- json_schema/sample.json | 14 +++++++------- 2 files changed, 14 insertions(+), 14 deletions(-) diff --git a/json_schema/assay.json b/json_schema/assay.json index cad58f5ae..ad694f989 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -2,18 +2,18 @@ "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, - "description": "An assay contains Information relevant to how RNA expression levels were assayed or otherwise the sample was converted into digital information", + "description": "An assay contains information relevant to how a sample (in vitro) was converted into digital information (in silico).", "properties": { "core": { "description": "type and schema for this object", "$ref": "core.json" }, "assay_id": { - "description": "unique id for this assay", + "description": "A unique ID for this assay.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity assay.", + "description": "A short, descriptive name for the assay that need not be unique.", "type": "string" }, "description": { @@ -21,19 +21,19 @@ "type": "string" }, "imaging": { - "description": "Information on image based RNA quantification assays", + "description": "Information on image-based RNA quantification assays.", "$ref": "imaging.json" }, "rna": { - "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", + "description": "Information about how RNA was converted to cDNA.", "$ref": "rna.json" }, "seq": { - "description": "Information about how a sample was sequenced.", + "description": "Information about how a cDNA sample was sequenced.", "$ref": "seq.json" }, "single_cell": { - "description": "Contains information on single cell aspects of an assay.", + "description": "Information on single-cell aspects of an assay.", "$ref": "single_cell.json" } }, diff --git a/json_schema/sample.json b/json_schema/sample.json index 90204b248..c5a2cd9a3 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,9 +1,9 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a body and the assay.", "additionalProperties" : false, + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a donor and the assay.", "additionalProperties" : false, "patternProperties": { "^characteristics_.*$": { - "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", "type": "string" } @@ -31,11 +31,11 @@ ] }, "sample_id":{ - "description": "A local identifier for the sample. Should be unique in the context of the submission (project).", + "description": "A local identifier for the sample. Should be unique in the context of the project.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity sample.", + "description": "A short, descriptive name for the sample that need not be unique.", "type": "string" }, "description": { @@ -62,15 +62,15 @@ }, "ncbi_taxon_id" : { - "description": "Taxon id from NCBI", + "description": "A taxonomy ID (taxonID) from NCBI.", "type" : "integer" }, "genus_species": { - "description": "Scientific binomial name of donor species in text field, NCBI taxon in ontology field", + "description": "Scientific binomial name of donor species. e.g. \"homo sapiens\". NCBI taxon in ontology field.", "$ref": "ontology.json" }, "supplementary_files": { - "description": "Sample level supplementary files.", + "description": "A list of filenames of sample-level supplementary files.", "items": { "type": "string" }, From 82edbf4e8afe56b9521993d49a5a61925d7deb6a Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 13:59:01 +0000 Subject: [PATCH 076/128] Beautified field descriptions for protocol.json. --- json_schema/protocol.json | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 087f15e7c..c2b7164c7 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -5,11 +5,11 @@ "description": "protocol schema generate by tagSchemaToJson from protocol", "properties": { "protocol_id":{ - "description": "Unique ID for this protocol.", + "description": "A unique ID for the protocol.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity protocol.", + "description": "A short, descriptive name for the protocol that need not be unique.", "type": "string" }, "description": { @@ -17,7 +17,7 @@ "type": "string" }, "batch_number": { - "description": "the batch of kit used", + "description": "The batch of kit used.", "type": "string" }, "core": { @@ -25,21 +25,21 @@ "$ref": "core.json" }, "description": { - "description": "a text based desciption about the protocol", + "description": "A text-based description of the protocol.", "type": "string" }, "pdf": { - "description": "A pdf containing the details of the protocol", + "description": "A filename of a PDF containing the details of the protocol.", "pattern": "^.*.pdf$", "type": "string" }, "retail_name": { - "description": "the retail name of the kit used e.g SureCell WTA 3\u2032 Library Prep Kit", + "description": "The retail name of the kit used. e.g SureCell WTA 3\' Library Prep Kit", "type": "string" }, "type": { "$ref": "ontology.json", - "description": "Type of protocol, ideally an EFO term" + "description": "The yype of protocol. Ideally an EFO term." } }, "required": [ From c0c2a97755a8a9436ce3802f584dfe7f1f972e35 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 16:00:14 +0000 Subject: [PATCH 077/128] Reorganising external accession IDs from INSDC database --- json_schema/project.json | 28 ++++++++---------- json_schema/sample.json | 18 ++++------- json_schema/seq.json | 64 ++++++++++++++++++---------------------- 3 files changed, 46 insertions(+), 64 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index 6c8072654..eb6745ad4 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -24,8 +24,9 @@ }, "array_express_investigation": { "description": "An EBI ArrayExpress investigation accession.", - "pattern": "^E-....-.*$" - }, + "pattern": "^E-....-.*$", + "type": "string" + }, "contributors": { "description": "List of people contributing to the project.", "items": { @@ -37,11 +38,6 @@ "$ref": "core.json", "description": "type and schema for this object" }, - "ddjb_trace": { - "description": "Japanese trace archive project accession.", - "pattern": "^ERP.*$", - "type": "string" - }, "experimental_design": { "items": { "$ref": "ontology.json", @@ -61,9 +57,14 @@ "pattern": "^GSE.*$", "type": "string" }, - "ncbi_bioproject": { - "description": "An NCBI BioProject ID.", - "pattern": "^PRJNA.*$", + "insdc_project": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) project accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRP, ERP, or SRP.", + "pattern": "^[D|E|S]RP\d+$", + "type": "string" + }, + "insdc_study": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) study accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with PRJE, PRJN, or PRJD", + "pattern": "^PRJ[E|N|D]\w\d+$", "type": "string" }, "publications": { @@ -80,11 +81,6 @@ }, "type": "array" }, - "sra_project": { - "description": "An NCBI SRA project accession.", - "pattern": "^SRP.*$", - "type": "string" - }, "supplementary_files": { "description": "Project-level supplementary files. e.g. experimental design documents, lab spreadsheets, manuscripts in preparation.", "items": { @@ -92,7 +88,7 @@ }, "type": "array" } - }, + }, "required": [ "core", "contributors", diff --git a/json_schema/sample.json b/json_schema/sample.json index c5a2cd9a3..d84f07f13 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -82,21 +82,13 @@ "additionalProperties" : false, "properties": { "biosd_sample": { - "description": "EBI biosample ID", + "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", + "pattern": "^SAM[N|E|D]\d+$", "type": "string" }, - "ncbi_biosample": { - "description": "NCBI biosample ID", - "type": "string" - }, - "geo_sample": { - "description": "NCBI GEO sample accession", - "pattern": "^GSM.*$", - "type": "string" - }, - "ena_sample": { - "description": "European nucleotide archive sample ID", - "pattern": "^ERS.*$", + "insdc_sample": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) sample accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRS, ERS, or SRS.", + "pattern": "^[D|E|S]RS\d+$", "type": "string" } } diff --git a/json_schema/seq.json b/json_schema/seq.json index 787636492..7f43eec1b 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -39,37 +39,43 @@ }, "description": "Information about how a sample was sequenced.", "properties": { - "ena_experiment": { - "description": "European Nucleotide Archive experiment accession", - "pattern": "^ERX.*$", + "insdc_experiment": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) experiment accession. Accession must start with DRX, ERX, or SRX.", + "pattern": "^[D|E|S]RX\d+$", "type": "string" }, - "ena_run": { - "description": "European Nucleotide Archive run accession", - "pattern": "^ERR.*$", - "type": "string" + "insdc_run": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) run accession. Accession must start with DRR, ERR, or SRR.", + "items": { + "pattern": "^[D|E|S]RR\d+$", + "type": "string" + }, + "type": "array" }, "instrument_model": { - "description": "Examples: HiSeq 200, Pac Bio SEQuel", + "description": "The model of the sequencer used. e.g. HiSeq 2000, Sequel.", "enum": [ - "Illumina HiSeq 2000", - "Illumina HiSeq 2500", - "Illumina HiSeq 4000", - "Illumina MiSeq", - "Illumina NextSeq 500" + "HiSeq 2000", + "HiSeq 2500", + "HiSeq 4000", + "MiSeq", + "NextSeq 500", + "Sequel" ] }, "instrument_platform": { - "description": "Examples: Illumina, Ion Torrent, Pac Bio", + "description": "The sequencing platform used. e.g. Illumina, Ion Torrent, Pacific Biosciences.", "enum": [ - "Illumina" + "Illumina", + "Ion Torrent", + "Pacific Biosciences" ] }, "lanes": { "$ref": "#/definitions/lanes" }, "library_construction": { - "description": "How dna sequencing library was prepared from sample or rna library. Examples: \"Nextera XT\" \"TrueSeq\"", + "description": "How the DNA sequencing library was prepared. e.g. \"Nextera XT\" \"TrueSeq\".", "enum": [ "Nextera XT", "TruSeq", @@ -77,41 +83,29 @@ ] }, "library_protocol": { - "description": "DNA sequencing library preparation protocol", + "description": "DNA sequencing library preparation protocol.", "pattern": "^P-....-.*$", "type": "string" }, "local_machine_name": { - "description": "Local lab name for particular machine of given platform and model this was run on.", + "description": "Local name for the particular machine on which the sample was sequenced.", "type": "string" }, "molecule": { - "description": "RNA, DNA, or protein, or more specifically \"total RNA,\" \"genomic DNA,\" etc.", + "description": "Specific type of molecule sequenced. e.g. total RNA, genomic DNA, polyA RNA.", "enum": [ "RNA", "polyA RNA", - "total RNA" + "total RNA", + "genomic DNA" ] }, "paired_ends": { - "description": "Is a paired end sequencing strategy used? Values are yes/no", + "description": "Was a paired-end sequencing strategy used? Must be either yes or no.", "type": "boolean" }, - "sra_experiment": { - "description": "NCBI Short Read Archive experiment accession (SRX)", - "pattern": "^SRX.*$", - "type": "string" - }, - "sra_run": { - "description": "NCBI Short Read Archive run accession (SRR)", - "items": { - "pattern": "^SRR.*$", - "type": "string" - }, - "type": "array" - }, "umi_barcode": { - "description": "Information about unique molecular identifier barcode", + "description": "Information about unique molecular identifier (umi) barcode.", "$ref": "barcode.json" } }, From 0f5bdf543f447454b1e4996a1b49c0c8c88d232f Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 16:11:42 +0000 Subject: [PATCH 078/128] Reorganised INSDC accession fields Combined DDBJ, NCBI, and ENA accession fields for runs, samples, experiments, projects, and biosamples. Also fixed minor typos and formatting of the field descriptions. This addresses issue #48. --- json_schema/project.json | 159 +++++++++++++++++++-------------------- 1 file changed, 77 insertions(+), 82 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index 6c8072654..d84f07f13 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -1,103 +1,98 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, - "description": "project schema generate by tagSchemaToJson from project", + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a donor and the assay.", "additionalProperties" : false, "patternProperties": { - "^characteristics_.*$": { - "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", - "type": "string" - } - }, + "^characteristics_.*$": { + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", + "type": "string" + + } + }, + "allOf" : [{"required" : ["id", "type", "ncbi_taxon_id"]}], + "oneOf" : [{"required" : ["donor_description"], "properties": { "type": { "enum" : ["donor"]}}}, + {"required" : ["immortalized_cell_line_description"], "properties": { "type": { "enum" : ["immortalized_cell_line"]}}}, + {"required" : ["cell_suspension_description"], "properties": { "type": { "enum" : ["cell_suspension"]}}}, + {"required" : ["organoid_description"], "properties": { "type": { "enum" : ["organoid"]}}}, + {"required" : ["primary_cell_line_description"], "properties": { "type": { "enum" : ["primary_cell_line"]}}}, + {"required" : ["specimen_from_organism_description"], "properties": { "type": { "enum" : ["specimen_from_organism"]}}} + ], + "properties": { - "project_id":{ - "description": "A unique ID for the project.", + "core": { "$ref": "core.json" }, + "type": { + "description": "The name of the core metadata entity type.", + "enum": [ + "donor", + "specimen_from_organism", + "cell_suspension", + "organoid", + "immortalized_cell_line", + "primary_cell_line" + ] + }, + "sample_id":{ + "description": "A local identifier for the sample. Should be unique in the context of the project.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity project. Does not need to be unique.", + "description": "A short, descriptive name for the sample that need not be unique.", "type": "string" }, "description": { - "description": "A general description of the project.", + "description": "A general description of the sample.", "type": "string" }, - "array_express_investigation": { - "description": "An EBI ArrayExpress investigation accession.", - "pattern": "^E-....-.*$" - }, - "contributors": { - "description": "List of people contributing to the project.", - "items": { - "$ref": "contact.json" - }, - "type": "array" - }, - "core": { - "$ref": "core.json", - "description": "type and schema for this object" - }, - "ddjb_trace": { - "description": "Japanese trace archive project accession.", - "pattern": "^ERP.*$", - "type": "string" + "donor_description" : { + "$ref": "donor.json" }, - "experimental_design": { - "items": { - "$ref": "ontology.json", - "description": "A short description of overall experiment type. e.g. \"single cell RNA sequencing.\"" - }, - "type": "array" - }, - "experimental_factor_name": { - "description": "A list of the factors that vary between samples in the experiment. e.g. \"time since collection\", \"preservation method\"", - "items": { - "type": "string" - }, - "type": "array" - }, - "geo_series": { - "description": "An NCBI GEO series accession.", - "pattern": "^GSE.*$", - "type": "string" + "specimen_from_organism_description" : { + "$ref": "specimen_from_organism.json" }, - "ncbi_bioproject": { - "description": "An NCBI BioProject ID.", - "pattern": "^PRJNA.*$", - "type": "string" + "immortalized_cell_line_description" : { + "$ref": "immortalized_cell_line.json" + }, + "primary_cell_line_description" : { + "$ref": "primary_cell_line.json" + }, + "organoid_description" : { + "$ref": "organoid.json" + }, + "cell_suspension_description" : { + "$ref": "cell_suspension.json" + }, + + "ncbi_taxon_id" : { + "description": "A taxonomy ID (taxonID) from NCBI.", + "type" : "integer" + }, + "genus_species": { + "description": "Scientific binomial name of donor species. e.g. \"homo sapiens\". NCBI taxon in ontology field.", + "$ref": "ontology.json" }, - "publications": { - "items": { - "$ref": "publication.json", - "description": "An array of publication modules." - }, - "type": "array" - }, - "related_projects": { - "description": "A list of other projects that may be logically grouped with this one.", - "items": { - "type": "string" - }, - "type": "array" - }, - "sra_project": { - "description": "An NCBI SRA project accession.", - "pattern": "^SRP.*$", - "type": "string" - }, "supplementary_files": { - "description": "Project-level supplementary files. e.g. experimental design documents, lab spreadsheets, manuscripts in preparation.", + "description": "A list of filenames of sample-level supplementary files.", "items": { "type": "string" - }, + }, "type": "array" + }, + "sample_accessions": { + "type": "object", + "description": "One or more accession numbers from a standard archive.", + "additionalProperties" : false, + "properties": { + "biosd_sample": { + "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", + "pattern": "^SAM[N|E|D]\d+$", + "type": "string" + }, + "insdc_sample": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) sample accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRS, ERS, or SRS.", + "pattern": "^[D|E|S]RS\d+$", + "type": "string" + } + } } - }, - "required": [ - "core", - "contributors", - "id" - ], - "title": "project", - "type": "object" + }, + "title": "sample" } From 71c91f081418bc03c0fd842f7d40ab0432ecc106 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 16:15:58 +0000 Subject: [PATCH 079/128] Reorganisation of seq and sample JSON. --- json_schema/sample.json | 18 +++----- json_schema/seq.json | 94 +++++++++++++++++++---------------------- 2 files changed, 49 insertions(+), 63 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index c5a2cd9a3..d84f07f13 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -82,21 +82,13 @@ "additionalProperties" : false, "properties": { "biosd_sample": { - "description": "EBI biosample ID", + "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", + "pattern": "^SAM[N|E|D]\d+$", "type": "string" }, - "ncbi_biosample": { - "description": "NCBI biosample ID", - "type": "string" - }, - "geo_sample": { - "description": "NCBI GEO sample accession", - "pattern": "^GSM.*$", - "type": "string" - }, - "ena_sample": { - "description": "European nucleotide archive sample ID", - "pattern": "^ERS.*$", + "insdc_sample": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) sample accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRS, ERS, or SRS.", + "pattern": "^[D|E|S]RS\d+$", "type": "string" } } diff --git a/json_schema/seq.json b/json_schema/seq.json index 787636492..f2c4db1ee 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -39,79 +39,73 @@ }, "description": "Information about how a sample was sequenced.", "properties": { - "ena_experiment": { - "description": "European Nucleotide Archive experiment accession", - "pattern": "^ERX.*$", + "insdc_experiment": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) experiment accession. Accession must start with DRX, ERX, or SRX.", + "pattern": "^[D|E|S]RX\d+$", "type": "string" - }, - "ena_run": { - "description": "European Nucleotide Archive run accession", - "pattern": "^ERR.*$", - "type": "string" - }, + }, + "insdc_run": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) run accession. Accession must start with DRR, ERR, or SRR.", + "items": { + "pattern": "^[D|E|S]RR\d+$", + "type": "string" + }, + "type": "array" + }, "instrument_model": { - "description": "Examples: HiSeq 200, Pac Bio SEQuel", + "description": "The model of the sequencer used. e.g. HiSeq 2000, Sequel.", "enum": [ - "Illumina HiSeq 2000", - "Illumina HiSeq 2500", - "Illumina HiSeq 4000", - "Illumina MiSeq", - "Illumina NextSeq 500" + "HiSeq 2000", + "HiSeq 2500", + "HiSeq 4000", + "MiSeq", + "NextSeq 500", + "Sequel" ] - }, + }, "instrument_platform": { - "description": "Examples: Illumina, Ion Torrent, Pac Bio", + "description": "The sequencing platform used. e.g. Illumina, Ion Torrent, Pacific Biosciences.", "enum": [ - "Illumina" + "Illumina", + "Ion Torrent", + "Pacific Biosciences" ] - }, + }, "lanes": { "$ref": "#/definitions/lanes" - }, + }, "library_construction": { - "description": "How dna sequencing library was prepared from sample or rna library. Examples: \"Nextera XT\" \"TrueSeq\"", + "description": "How the DNA sequencing library was prepared. e.g. \"Nextera XT\" \"TrueSeq\".", "enum": [ - "Nextera XT", - "TruSeq", + "Nextera XT", + "TruSeq", "modified Nextera XT" ] - }, + }, "library_protocol": { - "description": "DNA sequencing library preparation protocol", - "pattern": "^P-....-.*$", + "description": "DNA sequencing library preparation protocol.", + "pattern": "^P-....-.*$", "type": "string" - }, + }, "local_machine_name": { - "description": "Local lab name for particular machine of given platform and model this was run on.", + "description": "Local name for the particular machine on which the sample was sequenced.", "type": "string" - }, + }, "molecule": { - "description": "RNA, DNA, or protein, or more specifically \"total RNA,\" \"genomic DNA,\" etc.", + "description": "Specific type of molecule sequenced. e.g. total RNA, genomic DNA, polyA RNA.", "enum": [ - "RNA", - "polyA RNA", - "total RNA" + "RNA", + "polyA RNA", + "total RNA", + "genomic DNA" ] - }, + }, "paired_ends": { - "description": "Is a paired end sequencing strategy used? Values are yes/no", + "description": "Was a paired-end sequencing strategy used? Must be either yes or no.", "type": "boolean" - }, - "sra_experiment": { - "description": "NCBI Short Read Archive experiment accession (SRX)", - "pattern": "^SRX.*$", - "type": "string" - }, - "sra_run": { - "description": "NCBI Short Read Archive run accession (SRR)", - "items": { - "pattern": "^SRR.*$", - "type": "string" - }, - "type": "array" - }, + }, "umi_barcode": { - "description": "Information about unique molecular identifier barcode", + "description": "Information about unique molecular identifier (umi) barcode.", "$ref": "barcode.json" } }, From baf6736b03e950ff2ee2ed48d5be2b6fe6d3216a Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 16:34:38 +0000 Subject: [PATCH 080/128] Beautified field descriptions for donor.json. --- json_schema/donor.json | 34 +++++++++++++++++----------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index d61e76286..2bdc77cde 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -4,13 +4,13 @@ "additionalProperties" : false, "properties": { "age": { - "description": "Age in age_units. Expressed since birth. For embryos measured since fertilization.", + "description": "Age in age_units. For embryos, measured since fertilization. For all others, measured since birth.", "maximum": 150, "minimum": 0, "type": "number" }, "age_unit": { - "description": "Unit age is expressed, typically day, week, month, or year", + "description": "The unit in which age is expressed. Must be one of day, week, month, or year.", "enum": [ "hour", "day", @@ -19,29 +19,29 @@ ] }, "alcohol_history": { - "description": "Number of drinks consumed on a typical day", + "description": "Number of drinks consumed on a typical day.", "type": "string" }, "ancestry": { - "description": "term from https://www.ebi.ac.uk/ols/ontologies/ancestro", + "description": "An array of ontology terms from EMBL-EBI's Ancestry Ontology describing ancestral groups, uncategorised ancestral groups, and population isolates.", "type": "array", "items": { "$ref": "ontology.json" } }, "body_mass_index": { - "description": "Body mass index of donor", + "description": "The body mass index of the donor.", "maximum": 100, "minimum": 5, "type": "number" }, "death": { - "description": "Information about conditions of death (or info that donor was living at time of collection)", + "description": "Information about conditions of death (or info that donor was living at time of collection).", "$ref": "death.json" }, "development_stage": { - "description": "More detailed (especially for embryos) version of life_stage. Might be \"E9\" or \"P17\" for a mouse.", + "description": "More detailed (especially for embryos) version of life_stage. e.g. \"E9\" or \"P17\" for mouse.", "$ref": "ontology.json" }, "disease": { @@ -52,21 +52,21 @@ } }, "genotype": { - "description": "Genotype. List of genetic changes from usual. Should be strain, cross and genetic modification info in MGI format for mice.", + "description": "Genotype of donor including strain, cross, and genetic modification information. Must be in MGI format for mice.", "type": "string" }, "height": { - "description": "Height of donor in meters", + "description": "Height of donor in meters.", "maximum": 10, "minimum": 0, "type": "number" }, "is_living": { - "description": "If yes donor is living at time of sample donation.", + "description": "Should be yes if donor is living at time of sample donation. Otherwise, should be no.", "type": "boolean" }, "life_stage": { - "description": "describe_me_please", + "description": "Should be one of adult, child, embryo, or postpartum.", "enum": [ "adult", "child", @@ -75,14 +75,14 @@ ] }, "medication": { - "description": "List of medications donor is on", + "description": "List of medications the donor was currently taking at time of sample donation.", "type": "array", "items": { "$ref": "ontology.json" } }, "nutritional_state": { - "description": "Normal, fasting, feeding tube removed, etc", + "description": "Should be one of normal, fasting, or feeding tube removed.", "enum": [ "normal", "fasting", @@ -90,7 +90,7 @@ ] }, "sex": { - "description": "Sex of donor. Either 'male' 'female' 'mixed' or 'unknown'", + "description": "Sex of donor. Should be one of male, female, mixed, or unknown.", "enum": [ "female", "male", @@ -99,18 +99,18 @@ ] }, "smoking_history": { - "description": "Estimated # of cigarattes smoked per day and for how many years", + "description": "Estimated number of cigarettes smoked per day and for how many years.", "type": "string" }, "strain": { - "description": "Mouse inbred strain. Example C57BL/6.", + "description": "The name of th mouse inbred strain. e.g. C57BL/6.", "type": "array", "items": { "$ref": "ontology.json" } }, "weight": { - "description": "Weight of donor in kg", + "description": "Weight of donor in kilograms.", "maximum": 1000, "minimum": 0, "type": "number" From 37bcf4435ed5bbdc957fc0290cf27f4bf0789f51 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 16:57:58 +0000 Subject: [PATCH 081/128] Beautified field descriptions for specimen_from_organism.json. --- json_schema/specimen_from_organism.json | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index ceae9c858..659cd456f 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "Information about the specimen that was extracted from the donor organism", + "description": "Information about the specimen that was extracted from the donor organism.", "title": "specimen_from_organism", "type": "object", "properties": { @@ -9,17 +9,17 @@ "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, + "donor_id" : { + "type" : "string", + "description" : "The ID of the donor from which this sample was collected." + }, "organ": { "$ref": "ontology.json", - "description": "The organ that the sample came from. \"Blood\" and \"connective tissue\" count as organs." + "description": "The organ that the sample came from. e.g. liver, spleen. \"Blood\" and \"connective tissue\" count as organs." }, "state_of_specimen": { "$ref": "state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." - }, - "donor_id" : { - "type" : "string", - "description" : "the local identifier for the donor of this sample" } }, "required": [ From 408bee71e19047c08ed3c8cf7ebae3f027319fa2 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 1 Nov 2017 17:03:10 +0000 Subject: [PATCH 082/128] Corrected project.json --- json_schema/project.json | 139 ++++++++++++++++++++------------------- 1 file changed, 70 insertions(+), 69 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index d84f07f13..a8d1eb38a 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -1,98 +1,99 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a donor and the assay.", "additionalProperties" : false, + "additionalProperties": false, + "definitions": {}, + "description": "project schema generate by tagSchemaToJson from project", "patternProperties": { - "^characteristics_.*$": { - "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", - "type": "string" - - } + "^characteristics_.*$": { + "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", + "type": "string" + } }, - "allOf" : [{"required" : ["id", "type", "ncbi_taxon_id"]}], - "oneOf" : [{"required" : ["donor_description"], "properties": { "type": { "enum" : ["donor"]}}}, - {"required" : ["immortalized_cell_line_description"], "properties": { "type": { "enum" : ["immortalized_cell_line"]}}}, - {"required" : ["cell_suspension_description"], "properties": { "type": { "enum" : ["cell_suspension"]}}}, - {"required" : ["organoid_description"], "properties": { "type": { "enum" : ["organoid"]}}}, - {"required" : ["primary_cell_line_description"], "properties": { "type": { "enum" : ["primary_cell_line"]}}}, - {"required" : ["specimen_from_organism_description"], "properties": { "type": { "enum" : ["specimen_from_organism"]}}} - ], - "properties": { - "core": { "$ref": "core.json" }, - "type": { - "description": "The name of the core metadata entity type.", - "enum": [ - "donor", - "specimen_from_organism", - "cell_suspension", - "organoid", - "immortalized_cell_line", - "primary_cell_line" - ] - }, - "sample_id":{ - "description": "A local identifier for the sample. Should be unique in the context of the project.", + "project_id":{ + "description": "A unique ID for the project.", "type": "string" }, "name": { - "description": "A short, descriptive name for the sample that need not be unique.", + "description": "A short descriptive name for the entity project. Does not need to be unique.", "type": "string" }, "description": { - "description": "A general description of the sample.", + "description": "A general description of the project.", "type": "string" }, - "donor_description" : { - "$ref": "donor.json" + "array_express_investigation": { + "description": "An EBI ArrayExpress investigation accession.", + "pattern": "^E-....-.*$", + "type": "string" }, - "specimen_from_organism_description" : { - "$ref": "specimen_from_organism.json" + "contributors": { + "description": "List of people contributing to the project.", + "items": { + "$ref": "contact.json" + }, + "type": "array" }, - "immortalized_cell_line_description" : { - "$ref": "immortalized_cell_line.json" + "core": { + "$ref": "core.json", + "description": "type and schema for this object" }, - "primary_cell_line_description" : { - "$ref": "primary_cell_line.json" + "experimental_design": { + "items": { + "$ref": "ontology.json", + "description": "A short description of overall experiment type. e.g. \"single cell RNA sequencing.\"" + }, + "type": "array" }, - "organoid_description" : { - "$ref": "organoid.json" + "experimental_factor_name": { + "description": "A list of the factors that vary between samples in the experiment. e.g. \"time since collection\", \"preservation method\"", + "items": { + "type": "string" + }, + "type": "array" }, - "cell_suspension_description" : { - "$ref": "cell_suspension.json" + "geo_series": { + "description": "An NCBI GEO series accession.", + "pattern": "^GSE.*$", + "type": "string" }, - - "ncbi_taxon_id" : { - "description": "A taxonomy ID (taxonID) from NCBI.", - "type" : "integer" + "insdc_project": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) project accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRP, ERP, or SRP.", + "pattern": "^[D|E|S]RP\d+$", + "type": "string" }, - "genus_species": { - "description": "Scientific binomial name of donor species. e.g. \"homo sapiens\". NCBI taxon in ontology field.", - "$ref": "ontology.json" + "insdc_study": { + "description": "An INSDC (International Nucleotide Sequence Database Collaboration) study accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with PRJE, PRJN, or PRJD", + "pattern": "^PRJ[E|N|D]\w\d+$", + "type": "string" }, - "supplementary_files": { - "description": "A list of filenames of sample-level supplementary files.", + "publications": { + "items": { + "$ref": "publication.json", + "description": "An array of publication modules." + }, + "type": "array" + }, + "related_projects": { + "description": "A list of other projects that may be logically grouped with this one.", "items": { "type": "string" }, "type": "array" }, - "sample_accessions": { - "type": "object", - "description": "One or more accession numbers from a standard archive.", - "additionalProperties" : false, - "properties": { - "biosd_sample": { - "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", - "pattern": "^SAM[N|E|D]\d+$", - "type": "string" - }, - "insdc_sample": { - "description": "An INSDC (International Nucleotide Sequence Database Collaboration) sample accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRS, ERS, or SRS.", - "pattern": "^[D|E|S]RS\d+$", - "type": "string" - } - } + "supplementary_files": { + "description": "Project-level supplementary files. e.g. experimental design documents, lab spreadsheets, manuscripts in preparation.", + "items": { + "type": "string" + }, + "type": "array" } }, - "title": "sample" + "required": [ + "core", + "contributors", + "id" + ], + "title": "project", + "type": "object" } From aebc483230bb619ea09bfaeafc3d0c176efa47b6 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 10:22:31 +0000 Subject: [PATCH 083/128] Removed sample_type from sample subschema --- json_schema/cell_suspension.json | 4 ---- json_schema/immortalized_cell_line.json | 4 ---- json_schema/organoid.json | 4 ---- json_schema/primary_cell_line.json | 4 ---- 4 files changed, 16 deletions(-) diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 77abeb5fe..298954135 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -2,10 +2,6 @@ "$schema": "http://json-schema.org/draft-04/schema#", "description": "Information about the cell suspension derived from the collected or cultured specimen", "properties": { - "sample_type": { - "type": "string", - "enum": ["cell suspension"] - }, "target_cell_type": { "description" : "cell types present in suspension", "type": "array", diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index 0466082e8..a708003ce 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -3,10 +3,6 @@ "additionalProperties": false, "description": "Information about the immortalized cell line used in the sample", "properties": { - "sample_type": { - "type": "string", - "enum": ["cell line"] - }, "catalog_number": { "description": "the supplier catalogue number for the cell line", "type": "string" diff --git a/json_schema/organoid.json b/json_schema/organoid.json index a1be665af..06fd261e0 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -2,10 +2,6 @@ "$schema": "http://json-schema.org/draft-04/schema#", "description": "A description of an organoid sample.", "properties": { - "sample_type": { - "type": "string", - "enum": ["organoid"] - }, "model_for_organ": { "description": "Organ that this organoid is a model system for.", "$ref": "ontology.json" diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json index 0dcc808dc..d35b65298 100644 --- a/json_schema/primary_cell_line.json +++ b/json_schema/primary_cell_line.json @@ -3,10 +3,6 @@ "additionalProperties": false, "description": "Information about the primary cell line used in the sample", "properties": { - "sample_type": { - "type": "string", - "enum": ["cell line"] - }, "cell_type": { "description": "what cell type was the line derived from, CLO ontology usually", "$ref": "ontology_json/cell_type_ontology.json" From f61e98efc5b159ce95174310c302f2ffc1e4ddff Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 10:35:05 +0000 Subject: [PATCH 084/128] Deleted duplicate description field in protocol.json --- json_schema/protocol.json | 4 ---- 1 file changed, 4 deletions(-) diff --git a/json_schema/protocol.json b/json_schema/protocol.json index c2b7164c7..26f50c6ef 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -23,10 +23,6 @@ "core": { "description": "type and schema for this object", "$ref": "core.json" - }, - "description": { - "description": "A text-based description of the protocol.", - "type": "string" }, "pdf": { "description": "A filename of a PDF containing the details of the protocol.", From 40bdc8ceef846ae203f7dc15551d6ef9e41992b0 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 10:39:19 +0000 Subject: [PATCH 085/128] Fixed typo in protocol.json --- json_schema/protocol.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 26f50c6ef..d5b344d4e 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -35,7 +35,7 @@ }, "type": { "$ref": "ontology.json", - "description": "The yype of protocol. Ideally an EFO term." + "description": "The type of protocol. Ideally an EFO term." } }, "required": [ From e921de02b8538079e6f5a51109b96e90545bc0e8 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 10:48:22 +0000 Subject: [PATCH 086/128] Fixed regex in project, sample, seq --- json_schema/project.json | 2 +- json_schema/sample.json | 4 ++-- json_schema/seq.json | 14 +++++++------- 3 files changed, 10 insertions(+), 10 deletions(-) diff --git a/json_schema/project.json b/json_schema/project.json index a8d1eb38a..7dd2c9db0 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -64,7 +64,7 @@ }, "insdc_study": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) study accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with PRJE, PRJN, or PRJD", - "pattern": "^PRJ[E|N|D]\w\d+$", + "pattern": "^PRJ[E|N|D][a-zA-Z][0-9]+$", "type": "string" }, "publications": { diff --git a/json_schema/sample.json b/json_schema/sample.json index d84f07f13..856f88290 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -83,12 +83,12 @@ "properties": { "biosd_sample": { "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", - "pattern": "^SAM[N|E|D]\d+$", + "pattern": "^SAM[N|E|D][0-9]+$", "type": "string" }, "insdc_sample": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) sample accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRS, ERS, or SRS.", - "pattern": "^[D|E|S]RS\d+$", + "pattern": "^[D|E|S]RS[0-9]+$", "type": "string" } } diff --git a/json_schema/seq.json b/json_schema/seq.json index f2c4db1ee..1512ce8fd 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -11,26 +11,26 @@ "type": "number" }, "r1": { - "description": "File name of first read in paired read sequencing assay, or only read for unpaired", + "description": "File name of first read in paired-end read sequencing assay, or only read for unpaired.", "type": "string" }, "r2": { - "description": "File name of second read in paired read assay", + "description": "File name of second read in paired-end read assay.", "type": "string" }, "i1": { - "description": "A barcode index file. Often index off of first read", + "description": "A barcode index file. Often index off of first read.", "type": "string" }, "i2": { - "description": "A barcode index file. Often index off of second read", + "description": "A barcode index file. Often index off of second read.", "type": "string" } }, "required": [ "r1" ], - "title": "a sequencing lane", + "title": "A sequencing lane.", "type": "object" }, "title": "lane array", @@ -41,13 +41,13 @@ "properties": { "insdc_experiment": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) experiment accession. Accession must start with DRX, ERX, or SRX.", - "pattern": "^[D|E|S]RX\d+$", + "pattern": "^[D|E|S]RX[0-9]+$", "type": "string" }, "insdc_run": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) run accession. Accession must start with DRR, ERR, or SRR.", "items": { - "pattern": "^[D|E|S]RR\d+$", + "pattern": "^[D|E|S]RR[0-9]+$", "type": "string" }, "type": "array" From 5b90943d1e0d7f9c765a49fc285f4a47edae76e0 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 11:00:58 +0000 Subject: [PATCH 087/128] Fixed regex in project.json --- json_schema/project.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/project.json b/json_schema/project.json index 7dd2c9db0..9defa2ac7 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -59,7 +59,7 @@ }, "insdc_project": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) project accession. Can be from the DDBJ, EMBL-EBI, or NCBI. Accession must start with DRP, ERP, or SRP.", - "pattern": "^[D|E|S]RP\d+$", + "pattern": "^[D|E|S]RP[0-9]+$", "type": "string" }, "insdc_study": { From 54a8fa82aa33086a832e22d0df8c9ed31134d21c Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 11:10:00 +0000 Subject: [PATCH 088/128] Beautified field descriptions for primary_cell_line.json. --- json_schema/primary_cell_line.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json index d35b65298..0cb6e5e39 100644 --- a/json_schema/primary_cell_line.json +++ b/json_schema/primary_cell_line.json @@ -4,27 +4,27 @@ "description": "Information about the primary cell line used in the sample", "properties": { "cell_type": { - "description": "what cell type was the line derived from, CLO ontology usually", + "description": "The cell type that the cell line was derived from. Should be a CLO ontology.", "$ref": "ontology_json/cell_type_ontology.json" }, "date_established": { - "description": "when was the cell line established", + "description": "When the cell line was established, in date-time format.", "format": "date-time", "type": "string" }, "disease": { - "description": "text describing disease association, preferable a disease found in EFO", + "description": "Free text describing any disease association to the cell type. Should be found in EFO ontology.", "$ref": "ontology_json/disease_ontology.json" }, "passage_number": { - "description": "how many passages the cell line as been through", + "description": "The number of passages the cell line has been through.", "maximum": 1000, "minimum": 0, "type": "integer" }, "cell_cycle": { "$ref": "ontology.json", - "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." + "description": "The cell cycle phase if the cell line is synchronized growing cells or the phase is known." } }, "required":[ From b5e200a63d88fca84f650101949ede5fef7c4210 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 11:14:41 +0000 Subject: [PATCH 089/128] Beautified field descriptions for publication.json. --- json_schema/publication.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/json_schema/publication.json b/json_schema/publication.json index 5161fbc59..20856d7aa 100644 --- a/json_schema/publication.json +++ b/json_schema/publication.json @@ -4,26 +4,26 @@ "description": "A publication contains information about a journal article, book, web page or other external available documentation on a project", "properties": { "authors": { - "description": "Authors associated with piblication. Each is in last-name initials format such as: \"Tran NM\" or \"Kowalczyk M\" or \"de Silva-Schmidt CKJ\"", + "description": "A list of authors associated with the publication. Should be in \"surname initials\" format. e.g. \"Tran NM\", \"Kowalczyk M\", \"de Silva-Schmidt CKJ\"", "items": { "type": "string" }, "type": "array" }, "doi": { - "description": "Publication digital object identifier. Example \"10.1016/j.cell.2016.07.054\"", + "description": "The publication digital object identifier (doi), if available. e.g. \"10.1016/j.cell.2016.07.054\"", "type": "string" }, "pmid": { - "description": "PubMed ID of publication", + "description": "A PubMed ID of the publication, if available. e.g. 27565351", "type": "integer" }, "title": { - "description": "Title of publication", + "description": "The full title of the publication.", "type": "string" }, "url": { - "description": "URL, preferably not behind a paywall, for publication", + "description": "A URL, preferably not behind a paywall, for the publication.", "type": "string" } }, From d73faac278e04a2f3fcc9a7a06a8e5ae572f6797 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 11:29:17 +0000 Subject: [PATCH 090/128] Beautified field descriptions for contact.json. --- json_schema/contact.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/json_schema/contact.json b/json_schema/contact.json index ae7a2b661..8b82c85d4 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -86,24 +86,24 @@ ] }, "email": { - "description": "Email of contact for contributingauthors", + "description": "An email address for the contact.", "pattern": "^.*@.*..*$", "type": "string" }, "institution": { - "description": "Name of primary institute where contact works", + "description": "Name of primary institute where contact works.", "type": "string" }, "laboratory": { - "description": "Name of lab (often the PI name) within institute where contact works", + "description": "Name of lab (often the PI name) within institute where contact works.", "type": "string" }, "name": { - "description": "Text formatted with first name, middle, last in that order separated by commas. Usually middle is just an initial.", + "description": "The contact's name. Should be in the format first, middle, last name. Middle can be initial or left blank. e.g. John,D,Doe or Jane,,Smith", "type": "string" }, "phone":{ - "description": "Phone number (including country code) of submitter or submitter's lab", + "description": "Phone number (including country code) of contact or contact's lab.", "type": "string" } }, From 339577186b6266bdd6ad32ca7ae5fcb0d24b7883 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 11:43:03 +0000 Subject: [PATCH 091/128] Beautified field descriptions for death.json. --- json_schema/death.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/json_schema/death.json b/json_schema/death.json index 55ab3e0d3..a884a2d5d 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -5,27 +5,27 @@ "description": "Information relating to the death of the donor", "properties": { "cause_of_death": { - "description": "Cause of death from death report for human donor, from research lab for mouse", + "description": "Cause of death from death report for human donor, from research lab for mouse.", "$ref": "ontology.json" }, "cold_perfused": { - "description": "If yes, was perfused with cold fluid to help preserve tissues before heart stopped", + "description": "Yes if perfused with cold fluid to help preserve tissues before heart stopped. No otherwise.", "type": "boolean" }, "days_on_ventilator": { - "description": "Days on ventilator before dying", + "description": "Days on ventilator before dying.", "maximum": 10000, "minimum": 0, "type": "number" }, "hardy_scale": { - "description": "ventilator case, fast death -violent, fast-death -natural causes, intermediate death, slow death", + "description": "Should be integer representing: (0) ventilator case, (1) violent and fast death, (2) fast death of natural causes, (3) intermediate death, or (4) slow death.", "maximum": 4, "minimum": 0, "type": "integer" }, "time_of_death": { - "description": "Date and time of death on death certificate for deceased donor", + "description": "Date and time of death on death certificate for deceased donor.", "format": "date-time", "type": "string" } From 71013024f6a6f73822266cb2e93e45c74531fb5f Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 15:01:44 +0000 Subject: [PATCH 092/128] pushed sample type down to speicifc sub schema --- json_schema/donor.json | 6 +++++- json_schema/sample.json | 25 +++++++------------------ json_schema/specimen_from_organism.json | 5 +++++ 3 files changed, 17 insertions(+), 19 deletions(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index 2bdc77cde..525aa4957 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -3,6 +3,10 @@ "description": "Information about the donor from which a specimen was collected", "additionalProperties" : false, "properties": { + "type" : { + "enum" : ["donor"], + "description" : "This should always be a specimen_from_organism" + }, "age": { "description": "Age in age_units. For embryos, measured since fertilization. For all others, measured since birth.", "maximum": 150, @@ -117,7 +121,7 @@ } }, "required": [ - "is_living" + "is_living", "type" ], "title": "donor", "type": "object" diff --git a/json_schema/sample.json b/json_schema/sample.json index 856f88290..972d20030 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -8,28 +8,17 @@ } }, - "allOf" : [{"required" : ["id", "type", "ncbi_taxon_id"]}], - "oneOf" : [{"required" : ["donor_description"], "properties": { "type": { "enum" : ["donor"]}}}, - {"required" : ["immortalized_cell_line_description"], "properties": { "type": { "enum" : ["immortalized_cell_line"]}}}, - {"required" : ["cell_suspension_description"], "properties": { "type": { "enum" : ["cell_suspension"]}}}, - {"required" : ["organoid_description"], "properties": { "type": { "enum" : ["organoid"]}}}, - {"required" : ["primary_cell_line_description"], "properties": { "type": { "enum" : ["primary_cell_line"]}}}, - {"required" : ["specimen_from_organism_description"], "properties": { "type": { "enum" : ["specimen_from_organism"]}}} + "allOf" : [{"required" : ["id", "ncbi_taxon_id"]}], + "oneOf" : [{"required" : ["donor_description"]}, + {"required" : ["immortalized_cell_line_description"]}, + {"required" : ["cell_suspension_description"]}, + {"required" : ["organoid_description"]}, + {"required" : ["primary_cell_line_description"]}, + {"required" : ["specimen_from_organism_description"]} ], "properties": { "core": { "$ref": "core.json" }, - "type": { - "description": "The name of the core metadata entity type.", - "enum": [ - "donor", - "specimen_from_organism", - "cell_suspension", - "organoid", - "immortalized_cell_line", - "primary_cell_line" - ] - }, "sample_id":{ "description": "A local identifier for the sample. Should be unique in the context of the project.", "type": "string" diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 659cd456f..7531938ab 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -5,6 +5,10 @@ "title": "specimen_from_organism", "type": "object", "properties": { + "type" : { + "enum" : ["specimen_from_organism"], + "description" : "This should always be a specimen_from_organism" + }, "body_part": { "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." @@ -24,6 +28,7 @@ }, "required": [ "body_part", + "type", "organ" ] } From dceb90f6b3a1f10d8096ee3dfe6fc9e64947b750 Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 15:11:50 +0000 Subject: [PATCH 093/128] pushed sample type down to speicifc sub schema --- json_schema/donor.json | 2 +- json_schema/sample.json | 26 +++++++++++------------ schema_test_files/10x_pbmc8k_donor_0.json | 17 ++++++++------- src/sample_test.py | 26 +++++++++++------------ 4 files changed, 36 insertions(+), 35 deletions(-) diff --git a/json_schema/donor.json b/json_schema/donor.json index 525aa4957..c35bba080 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -5,7 +5,7 @@ "properties": { "type" : { "enum" : ["donor"], - "description" : "This should always be a specimen_from_organism" + "description" : "This should always be a donor" }, "age": { "description": "Age in age_units. For embryos, measured since fertilization. For all others, measured since birth.", diff --git a/json_schema/sample.json b/json_schema/sample.json index 972d20030..ea24cd553 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -8,13 +8,13 @@ } }, - "allOf" : [{"required" : ["id", "ncbi_taxon_id"]}], - "oneOf" : [{"required" : ["donor_description"]}, - {"required" : ["immortalized_cell_line_description"]}, - {"required" : ["cell_suspension_description"]}, - {"required" : ["organoid_description"]}, - {"required" : ["primary_cell_line_description"]}, - {"required" : ["specimen_from_organism_description"]} + "allOf" : [{"required" : ["sample_id", "ncbi_taxon_id"]}], + "oneOf" : [{"required" : ["donor"]}, + {"required" : ["immortalized_cell_line"]}, + {"required" : ["cell_suspension"]}, + {"required" : ["organoid"]}, + {"required" : ["primary_cell_line"]}, + {"required" : ["specimen_from_organism"]} ], "properties": { @@ -31,22 +31,22 @@ "description": "A general description of the sample.", "type": "string" }, - "donor_description" : { + "donor" : { "$ref": "donor.json" }, - "specimen_from_organism_description" : { + "specimen_from_organism" : { "$ref": "specimen_from_organism.json" }, - "immortalized_cell_line_description" : { + "immortalized_cell_line" : { "$ref": "immortalized_cell_line.json" }, - "primary_cell_line_description" : { + "primary_cell_line" : { "$ref": "primary_cell_line.json" }, - "organoid_description" : { + "organoid" : { "$ref": "organoid.json" }, - "cell_suspension_description" : { + "cell_suspension" : { "$ref": "cell_suspension.json" }, diff --git a/schema_test_files/10x_pbmc8k_donor_0.json b/schema_test_files/10x_pbmc8k_donor_0.json index b4ae3611c..d35a1f75c 100644 --- a/schema_test_files/10x_pbmc8k_donor_0.json +++ b/schema_test_files/10x_pbmc8k_donor_0.json @@ -1,14 +1,15 @@ { - "id": "d1", - "type": "donor", + "sample_id": "d1", "donor" : { + "type": "donor", "is_living": true, - "life_stage": "adult", - "species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } + "life_stage": "adult" + }, - "ncbi_taxon_id": 9606 + "ncbi_taxon_id": 9606, + "genus_species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } } \ No newline at end of file diff --git a/src/sample_test.py b/src/sample_test.py index a0bbfb2d7..1539940c2 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -14,16 +14,16 @@ # Specific schema tests to follow . validate(sv, dt1) -sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') -validate(sv, sfo1) - -sample_ingest_validator = get_validator('sample_ingest.json', base_uri) -sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0-ingest.json') -validate(sample_ingest_validator, sample_ingest_file) - -sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0-ingest.json') -validate(sample_ingest_validator, sample_ingest_file) - -sample_bundle_validator = get_validator('sample_bundle.json', base_uri) -sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') -validate(sample_bundle_validator, sample_bundle_file) +# sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') +# validate(sv, sfo1) +# +# sample_ingest_validator = get_validator('sample_ingest.json', base_uri) +# sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0-ingest.json') +# validate(sample_ingest_validator, sample_ingest_file) +# +# sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0-ingest.json') +# validate(sample_ingest_validator, sample_ingest_file) +# +# sample_bundle_validator = get_validator('sample_bundle.json', base_uri) +# sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') +# validate(sample_bundle_validator, sample_bundle_file) From 922e3b0f1d8955b0ba5cccb2fa05899464afdbfd Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 15:16:50 +0000 Subject: [PATCH 094/128] pushed sample type down to speicifc sub schema --- schema_test_files/10x_pbmc8k_sample_0.json | 7 ++++--- src/sample_test.py | 4 ++-- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/schema_test_files/10x_pbmc8k_sample_0.json b/schema_test_files/10x_pbmc8k_sample_0.json index f61b1471d..f6a76fab4 100644 --- a/schema_test_files/10x_pbmc8k_sample_0.json +++ b/schema_test_files/10x_pbmc8k_sample_0.json @@ -1,9 +1,10 @@ { - "id": "s1", - "type": "sample_from_organism", + "sample_id": "s1", "name": "PBMCs", "description": "peripheral blood mononuclear cells (PBMCs)", - "sample_from_organism" : { + "ncbi_taxon_id": 9606, + "specimen_from_organism" : { + "type": "specimen_from_organism", "organ": { "text": "blood", "ontology": "UBERON_0000178" diff --git a/src/sample_test.py b/src/sample_test.py index 1539940c2..9b1ebaef2 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -14,8 +14,8 @@ # Specific schema tests to follow . validate(sv, dt1) -# sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') -# validate(sv, sfo1) +sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') +validate(sv, sfo1) # # sample_ingest_validator = get_validator('sample_ingest.json', base_uri) # sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0-ingest.json') From 0101e95c1cde857639794e26a28e4bad5d382a77 Mon Sep 17 00:00:00 2001 From: David Osumi-Sutherland Date: Thu, 2 Nov 2017 15:33:56 +0000 Subject: [PATCH 095/128] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 674d0aee4..e92ae8074 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -[![Build Status](https://travis-ci.org/HumanCellAtlas/metadata-schema.svg?branch=master)](https://travis-ci.org/HumanCellAtlas/metadata-schema) +[![Build Status](https://travis-ci.org/HumanCellAtlas/metadata-schema.svg)](https://travis-ci.org/HumanCellAtlas/metadata-schema) # The Human Cell Atlas Metadata Schema From 8ae10fdfca9068be536dca686580fdf38a3221b8 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 16:16:28 +0000 Subject: [PATCH 096/128] Beautified field descriptions for sample, specimen, and state_of_specimen. --- json_schema/sample.json | 2 +- json_schema/specimen_from_organism.json | 4 ++-- json_schema/state_of_specimen.json | 14 +++++++------- 3 files changed, 10 insertions(+), 10 deletions(-) diff --git a/json_schema/sample.json b/json_schema/sample.json index ea24cd553..1249b7586 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -55,7 +55,7 @@ "type" : "integer" }, "genus_species": { - "description": "Scientific binomial name of donor species. e.g. \"homo sapiens\". NCBI taxon in ontology field.", + "description": "Scientific binomial name of donor species. e.g. Homo sapiens.", "$ref": "ontology.json" }, "supplementary_files": { diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 7531938ab..0d680cef3 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -7,7 +7,7 @@ "properties": { "type" : { "enum" : ["specimen_from_organism"], - "description" : "This should always be a specimen_from_organism" + "description" : "This should always be a specimen_from_organism." }, "body_part": { "$ref": "ontology_json/body_part_ontology.json", @@ -19,7 +19,7 @@ }, "organ": { "$ref": "ontology.json", - "description": "The organ that the sample came from. e.g. liver, spleen. \"Blood\" and \"connective tissue\" count as organs." + "description": "The organ that the sample came from. e.g. liver, spleen. Blood and connective tissue count as organs." }, "state_of_specimen": { "$ref": "state_of_specimen.json", diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index fcf5a2bbc..9c54ed2c5 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -5,7 +5,7 @@ "description": "State of body part at collection and how it was preserved after removal and/or cell enrichment", "properties": { "autolysis_score": { - "description": "State of tissue breakdown due to self-digestion: none, mild, moderate", + "description": "State of tissue breakdown due to self-digestion. Must be one of: none, mild, moderate.", "enum": [ "none", "mild", @@ -13,11 +13,11 @@ ] }, "gross_description": { - "description": "Color, size and other aspects of specimen as visible to naked eye", + "description": "Color, size, and other aspects of specimen as visible to naked eye.", "type": "string" }, "gross_image": { - "description": "Photographs of body part without magnification", + "description": "List of filenames of photographs of body part without magnification. Must be of format JPEG, TIFF, or PNG.", "items": { "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", "type": "string" @@ -25,17 +25,17 @@ "type": "array" }, "ischemic_time": { - "description": "Time in seconds when body part had insufficient blood supply.", + "description": "Duration of time, in seconds, that the body part had insufficient blood supply.", "maximum": 100000, "minimum": 0, "type": "integer" }, "microscopic_description": { - "description": "How the sample looks under the microscope and how it compares with normal cells", + "description": "How the sample looks under the microscope and how it compares with normal cells.", "type": "string" }, "microscopic_image": { - "description": "Photographs of body part under microscope", + "description": "List of filenames of photographs of body part under microscope. Must be of format JPEG, TIFF, or PNG.", "items": { "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", "type": "string" @@ -43,7 +43,7 @@ "type": "array" }, "postmortem_interval": { - "description": "Time in seconds between when death declared and time the tissue is preserved or processed", + "description": "Duration of time, in seconds, between when death is declared and when the tissue is preserved or processed.", "maximum": 100000, "minimum": 0, "type": "integer" From dbb9551951869398832616699ac0421290a6724e Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 16:17:40 +0000 Subject: [PATCH 097/128] Removed sample_type (as type) from specimen_from_organism. --- json_schema/specimen_from_organism.json | 5 ----- 1 file changed, 5 deletions(-) diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 0d680cef3..03efab46a 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -5,10 +5,6 @@ "title": "specimen_from_organism", "type": "object", "properties": { - "type" : { - "enum" : ["specimen_from_organism"], - "description" : "This should always be a specimen_from_organism." - }, "body_part": { "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." @@ -28,7 +24,6 @@ }, "required": [ "body_part", - "type", "organ" ] } From da227b90c04cce10c678dff4a135b1e2db1cc3f5 Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 2 Nov 2017 16:28:20 +0000 Subject: [PATCH 098/128] Updated travis.yml to point to lastest version testing script. --- .travis.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.travis.yml b/.travis.yml index ad278981d..62b936f34 100644 --- a/.travis.yml +++ b/.travis.yml @@ -8,5 +8,4 @@ install: - pip install -r requirements.txt script: - - cd tests - - python simple_test.py + - python test.py From 1bf9271f1af933cc2229fe732d967c59ded22c1b Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 16:31:51 +0000 Subject: [PATCH 099/128] Added type field back to specimen_from_organism.json --- json_schema/specimen_from_organism.json | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 03efab46a..0d680cef3 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -5,6 +5,10 @@ "title": "specimen_from_organism", "type": "object", "properties": { + "type" : { + "enum" : ["specimen_from_organism"], + "description" : "This should always be a specimen_from_organism." + }, "body_part": { "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." @@ -24,6 +28,7 @@ }, "required": [ "body_part", + "type", "organ" ] } From 3e53a7552c171499536202546a94bfa5d7e3abca Mon Sep 17 00:00:00 2001 From: dosumis Date: Thu, 2 Nov 2017 16:36:55 +0000 Subject: [PATCH 100/128] Updated travis.yml to point to lastest version testing script. --- .travis.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.travis.yml b/.travis.yml index 62b936f34..40a671ec3 100644 --- a/.travis.yml +++ b/.travis.yml @@ -8,4 +8,5 @@ install: - pip install -r requirements.txt script: + - cs src - python test.py From fe941a7f1fbc0f43e9cf2221507301fb36d57ae1 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 2 Nov 2017 16:55:40 +0000 Subject: [PATCH 101/128] cs to cd to change to src dir --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 40a671ec3..4d8ec1701 100644 --- a/.travis.yml +++ b/.travis.yml @@ -8,5 +8,5 @@ install: - pip install -r requirements.txt script: - - cs src + - cd src - python test.py From 76650589c7b3fec9b89f4e3d831ec970b416ad6a Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 20:48:24 +0000 Subject: [PATCH 102/128] did a round of cleanup of inconsistencies around required fields, removed type from sample sub schemas, updated examples --- json_schema/assay.json | 2 +- json_schema/cell_suspension.json | 5 +---- json_schema/donor.json | 6 +----- json_schema/immortalized_cell_line.json | 6 +----- json_schema/organoid.json | 2 +- json_schema/primary_cell_line.json | 4 ---- json_schema/project.json | 2 +- json_schema/protocol.json | 2 +- json_schema/sample.json | 7 ++++++- json_schema/specimen_from_organism.json | 9 --------- schema_test_files/10x_pbmc8k_donor_0.json | 3 +-- ...st.json => 10x_pbmc8k_donor_0_ingest.json} | 19 +++++++++++-------- ...t.json => 10x_pbmc8k_sample_0_ingest.json} | 0 13 files changed, 25 insertions(+), 42 deletions(-) rename schema_test_files/{10x_pbmc8k_donor_0-ingest.json => 10x_pbmc8k_donor_0_ingest.json} (52%) rename schema_test_files/{10x_pbmc8k_sample_0-ingest.json => 10x_pbmc8k_sample_0_ingest.json} (100%) diff --git a/json_schema/assay.json b/json_schema/assay.json index a207cb79f..e82d4087c 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -38,7 +38,7 @@ } }, "required": [ - "core", "id" + "core", "assay_id" ], "title": "assay", "type": "object" diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 298954135..0fdb8ef4f 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -23,8 +23,5 @@ "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" } }, - "title" : "cell_suspension", - "required":[ - "sample_type" - ] + "title" : "cell_suspension" } \ No newline at end of file diff --git a/json_schema/donor.json b/json_schema/donor.json index c35bba080..2bdc77cde 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -3,10 +3,6 @@ "description": "Information about the donor from which a specimen was collected", "additionalProperties" : false, "properties": { - "type" : { - "enum" : ["donor"], - "description" : "This should always be a donor" - }, "age": { "description": "Age in age_units. For embryos, measured since fertilization. For all others, measured since birth.", "maximum": 150, @@ -121,7 +117,7 @@ } }, "required": [ - "is_living", "type" + "is_living" ], "title": "donor", "type": "object" diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index a708003ce..630f6d958 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -43,10 +43,6 @@ "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." } }, - "required":[ - "sample_type", - "name" - ], - "title": "immortalised_cell_line", + "title": "immortalized_cell_line", "type": "object" } diff --git a/json_schema/organoid.json b/json_schema/organoid.json index 06fd261e0..eb83b910c 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -9,6 +9,6 @@ }, "title" : "organoid", "required":[ - "sample_type" + "model_for_organ" ] } \ No newline at end of file diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json index 0cb6e5e39..a42e3cc79 100644 --- a/json_schema/primary_cell_line.json +++ b/json_schema/primary_cell_line.json @@ -27,10 +27,6 @@ "description": "The cell cycle phase if the cell line is synchronized growing cells or the phase is known." } }, - "required":[ - "sample_type", - "name" - ], "title": "primary_cell_line", "type": "object" } diff --git a/json_schema/project.json b/json_schema/project.json index 97d3698ad..7e7aa0bbe 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -92,7 +92,7 @@ "required": [ "core", "contributors", - "id" + "project_id" ], "title": "project", "type": "object" diff --git a/json_schema/protocol.json b/json_schema/protocol.json index d5b344d4e..7eef0750a 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -40,7 +40,7 @@ }, "required": [ "core", - "id", + "protocol_id", "type" ], "title": "protocol", diff --git a/json_schema/sample.json b/json_schema/sample.json index ea24cd553..d2e5588fa 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -8,7 +8,7 @@ } }, - "allOf" : [{"required" : ["sample_id", "ncbi_taxon_id"]}], + "allOf" : [{"required" : ["sample_id", "core", "ncbi_taxon_id"]}], "oneOf" : [{"required" : ["donor"]}, {"required" : ["immortalized_cell_line"]}, {"required" : ["cell_suspension"]}, @@ -58,6 +58,11 @@ "description": "Scientific binomial name of donor species. e.g. \"homo sapiens\". NCBI taxon in ontology field.", "$ref": "ontology.json" }, + "derived_from" : { + "type" : "string", + "description" : "If this sample is derived from another sample e.g. a tissue or donor, enter the sample_id for the sample this was derived from", + "comment" : "This field is primarily required for spreadsheet based submissions" + }, "supplementary_files": { "description": "A list of filenames of sample-level supplementary files.", "items": { diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 7531938ab..f24a643d0 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -5,18 +5,10 @@ "title": "specimen_from_organism", "type": "object", "properties": { - "type" : { - "enum" : ["specimen_from_organism"], - "description" : "This should always be a specimen_from_organism" - }, "body_part": { "$ref": "ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, - "donor_id" : { - "type" : "string", - "description" : "The ID of the donor from which this sample was collected." - }, "organ": { "$ref": "ontology.json", "description": "The organ that the sample came from. e.g. liver, spleen. \"Blood\" and \"connective tissue\" count as organs." @@ -28,7 +20,6 @@ }, "required": [ "body_part", - "type", "organ" ] } diff --git a/schema_test_files/10x_pbmc8k_donor_0.json b/schema_test_files/10x_pbmc8k_donor_0.json index d35a1f75c..ea4ba429a 100644 --- a/schema_test_files/10x_pbmc8k_donor_0.json +++ b/schema_test_files/10x_pbmc8k_donor_0.json @@ -4,10 +4,9 @@ "type": "donor", "is_living": true, "life_stage": "adult" - }, "ncbi_taxon_id": 9606, - "genus_species": { + "genus_species": { "text": "Homo sapiens", "ontology": "NCBITAXON_9606" } diff --git a/schema_test_files/10x_pbmc8k_donor_0-ingest.json b/schema_test_files/10x_pbmc8k_donor_0_ingest.json similarity index 52% rename from schema_test_files/10x_pbmc8k_donor_0-ingest.json rename to schema_test_files/10x_pbmc8k_donor_0_ingest.json index 0a949b1f5..7333a3d41 100644 --- a/schema_test_files/10x_pbmc8k_donor_0-ingest.json +++ b/schema_test_files/10x_pbmc8k_donor_0_ingest.json @@ -6,16 +6,19 @@ "accession": "SAM0999697" }, "content" : { - "id": "d1", - "type": "donor", + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, + "sample_id": "d1", "donor" : { "is_living": true, - "life_stage": "adult", - "species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } + "life_stage": "adult" }, - "ncbi_taxon_id": 9606 + "ncbi_taxon_id": 9606, + "genus_species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" + } } } \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0-ingest.json b/schema_test_files/10x_pbmc8k_sample_0_ingest.json similarity index 100% rename from schema_test_files/10x_pbmc8k_sample_0-ingest.json rename to schema_test_files/10x_pbmc8k_sample_0_ingest.json From d6d33fbc83787befd5c421898b65eb4cea5abe35 Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 20:48:49 +0000 Subject: [PATCH 103/128] did a round of cleanup of inconsistencies around required fields, removed type from sample sub schemas, updated examples --- schema_test_files/10x_pbmc8k_donor_0.json | 6 ++- schema_test_files/10x_pbmc8k_sample_0.json | 11 ++-- .../10x_pbmc8k_sample_0_ingest.json | 32 ++++++----- .../10x_pbmc8k_sample_bundle.json | 53 +++++++++++-------- src/sample_test.py | 18 +++---- 5 files changed, 68 insertions(+), 52 deletions(-) diff --git a/schema_test_files/10x_pbmc8k_donor_0.json b/schema_test_files/10x_pbmc8k_donor_0.json index ea4ba429a..8d5874691 100644 --- a/schema_test_files/10x_pbmc8k_donor_0.json +++ b/schema_test_files/10x_pbmc8k_donor_0.json @@ -1,7 +1,10 @@ { + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, "sample_id": "d1", "donor" : { - "type": "donor", "is_living": true, "life_stage": "adult" }, @@ -10,5 +13,4 @@ "text": "Homo sapiens", "ontology": "NCBITAXON_9606" } - } \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0.json b/schema_test_files/10x_pbmc8k_sample_0.json index f6a76fab4..e8858452c 100644 --- a/schema_test_files/10x_pbmc8k_sample_0.json +++ b/schema_test_files/10x_pbmc8k_sample_0.json @@ -1,17 +1,20 @@ { + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, "sample_id": "s1", "name": "PBMCs", "description": "peripheral blood mononuclear cells (PBMCs)", "ncbi_taxon_id": 9606, "specimen_from_organism" : { - "type": "specimen_from_organism", "organ": { "text": "blood", "ontology": "UBERON_0000178" }, "body_part": { "text": "peripheral blood mononuclear cells (PBMCs)" - }, - "donor_id": "d1" - } + } + }, + "derived_from": "d1" } \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0_ingest.json b/schema_test_files/10x_pbmc8k_sample_0_ingest.json index a7bba3c92..ed058ed81 100644 --- a/schema_test_files/10x_pbmc8k_sample_0_ingest.json +++ b/schema_test_files/10x_pbmc8k_sample_0_ingest.json @@ -6,19 +6,23 @@ "accession": "SAM0888697" }, "content" : { - "id": "s1", - "type": "sample_from_organism", - "name": "PBMCs", - "description": "peripheral blood mononuclear cells (PBMCs)", - "sample_from_organism" : { - "organ": { - "text": "blood", - "ontology": "UBERON_0000178" - }, - "body_part": { - "text": "peripheral blood mononuclear cells (PBMCs)" - }, - "donor_id": "d1" - } + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, + "sample_id": "s1", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "ncbi_taxon_id": 9606, + "specimen_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + } + }, + "derived_from": "d1" } } \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_bundle.json b/schema_test_files/10x_pbmc8k_sample_bundle.json index eac118891..74c936c2d 100644 --- a/schema_test_files/10x_pbmc8k_sample_bundle.json +++ b/schema_test_files/10x_pbmc8k_sample_bundle.json @@ -7,19 +7,19 @@ "accession": "SAM0888697" }, "content": { - "id": "s1", - "type": "sample_from_organism", - "name": "PBMCs", - "description": "peripheral blood mononuclear cells (PBMCs)", - "sample_from_organism": { - "organ": { - "text": "blood", - "ontology": "UBERON_0000178" - }, - "body_part": { - "text": "peripheral blood mononuclear cells (PBMCs)" - }, - "donor_id": "d1" + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, + "sample_id": "d1", + "donor" : { + "is_living": true, + "life_stage": "adult" + }, + "ncbi_taxon_id": 9606, + "genus_species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" } } }, @@ -31,17 +31,24 @@ "accession": "SAM0999697" }, "content" : { - "id": "d1", - "type": "donor", - "donor" : { - "is_living": true, - "life_stage": "adult", - "species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, + "sample_id": "s1", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "ncbi_taxon_id": 9606, + "specimen_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + } }, - "ncbi_taxon_id": 9606 + "derived_from": "d1" }, "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1" } diff --git a/src/sample_test.py b/src/sample_test.py index 9b1ebaef2..4591dafba 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -17,13 +17,13 @@ sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') validate(sv, sfo1) # -# sample_ingest_validator = get_validator('sample_ingest.json', base_uri) -# sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0-ingest.json') -# validate(sample_ingest_validator, sample_ingest_file) -# -# sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0-ingest.json') -# validate(sample_ingest_validator, sample_ingest_file) +sample_ingest_validator = get_validator('sample_ingest.json', base_uri) +sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0_ingest.json') +validate(sample_ingest_validator, sample_ingest_file) + +sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0_ingest.json') +validate(sample_ingest_validator, sample_ingest_file) # -# sample_bundle_validator = get_validator('sample_bundle.json', base_uri) -# sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') -# validate(sample_bundle_validator, sample_bundle_file) +sample_bundle_validator = get_validator('sample_bundle.json', base_uri) +sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') +validate(sample_bundle_validator, sample_bundle_file) From 03224d4821f59cf9ab00234c04f23d45ea794290 Mon Sep 17 00:00:00 2001 From: Simon Jupp Date: Thu, 2 Nov 2017 23:14:15 +0000 Subject: [PATCH 104/128] moved to sample_ingest.json into definitions in sample_bundle, we don't need sample_ingest as standalone so this simplifies the files we need --- json_schema/assay_bundle.json | 33 +++++++ json_schema/project_bundle.json | 26 ++++++ json_schema/sample_bundle.json | 38 ++++++-- json_schema/sample_ingest.json | 30 ------- .../10x_pbmc8k_donor_0_ingest.json | 24 ----- .../10x_pbmc8k_sample_0_ingest.json | 28 ------ .../10x_pbmc8k_sample_bundle.json | 90 +++++++++---------- src/sample_test.py | 7 -- 8 files changed, 137 insertions(+), 139 deletions(-) create mode 100644 json_schema/assay_bundle.json create mode 100644 json_schema/project_bundle.json delete mode 100644 json_schema/sample_ingest.json delete mode 100644 schema_test_files/10x_pbmc8k_donor_0_ingest.json delete mode 100644 schema_test_files/10x_pbmc8k_sample_0_ingest.json diff --git a/json_schema/assay_bundle.json b/json_schema/assay_bundle.json new file mode 100644 index 000000000..922f77918 --- /dev/null +++ b/json_schema/assay_bundle.json @@ -0,0 +1,33 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for an assay bundle" , + "type": "array", + "definitions" : { + "assay_ingest" : { + "type": "object", + "required": ["hca_ingest", "content"], + "properties": { + "hca_ingest": { + "$ref": "ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "assay.json", + "description": "Assay content", + "type": "object" + }, + "derivation_protocols": { + "items": { + "$ref": "protocol.json", + "description": "An array of protocols used in derivation of this sample." + }, + "type": "array" + } + } + } + }, + "items": { + "$ref": "assay_bundle.json#/definitions/assay_ingest" + } +} \ No newline at end of file diff --git a/json_schema/project_bundle.json b/json_schema/project_bundle.json new file mode 100644 index 000000000..504ef0391 --- /dev/null +++ b/json_schema/project_bundle.json @@ -0,0 +1,26 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for a project bundle" , + "type": "array", + "definitions" : { + "project_ingest" : { + "type": "object", + "required": ["hca_ingest", "content"], + "properties": { + "hca_ingest": { + "$ref": "ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "project.json", + "description": "Project content", + "type": "object" + } + } + } + }, + "items": { + "$ref": "project_bundle.json#/definitions/project_ingest" + } +} \ No newline at end of file diff --git a/json_schema/sample_bundle.json b/json_schema/sample_bundle.json index c6bad86ed..95d8ec1a0 100644 --- a/json_schema/sample_bundle.json +++ b/json_schema/sample_bundle.json @@ -1,8 +1,36 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A schema for a sample bundle" , - "type": "array", - "items": { - "$ref" : "sample_ingest.json" + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for a sample bundle" , + "type": "array", + "definitions" : { + "sample_ingest" : { + "type": "object", + "required": ["hca_ingest", "content"], + "properties": { + "hca_ingest": { + "$ref": "ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "sample.json", + "description": "Sample content", + "type": "object" + }, + "derived_from": { + "type": "string" + }, + "derivation_protocols": { + "items": { + "$ref": "protocol.json", + "description": "An array of protocols used in derivation of this sample." + }, + "type": "array" + } + } } + }, + "items": { + "$ref": "sample_bundle.json#/definitions/sample_ingest" + } } \ No newline at end of file diff --git a/json_schema/sample_ingest.json b/json_schema/sample_ingest.json deleted file mode 100644 index 06e6d38a7..000000000 --- a/json_schema/sample_ingest.json +++ /dev/null @@ -1,30 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "A schema for a sample entity with added ingest data" , - "properties": { - "core" : { - "$ref": "ingest.json", - "description": "Sample content", - "type": "object" - }, - "content": { - "$ref": "sample.json", - "description": "Sample content", - "type": "object" - }, - "derived_from" : { - "type": "string" - }, - "derivation_protocols": { - "items": { - "$ref": "protocol.json", - "description": "An array of protocols used in derivation of this sample." - }, - "type": "array" - } - }, - "required": [ - "core", "content" - ] -} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_donor_0_ingest.json b/schema_test_files/10x_pbmc8k_donor_0_ingest.json deleted file mode 100644 index 7333a3d41..000000000 --- a/schema_test_files/10x_pbmc8k_donor_0_ingest.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "core" : { - "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", - "submissionDate": "2017-10-13T09:18:49.422Z", - "updateDate": "2017-10-13T09:19:40.069Z", - "accession": "SAM0999697" - }, - "content" : { - "core" : { - "schema_version" : "4.0.0", - "type" : "sample" - }, - "sample_id": "d1", - "donor" : { - "is_living": true, - "life_stage": "adult" - }, - "ncbi_taxon_id": 9606, - "genus_species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } - } -} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_0_ingest.json b/schema_test_files/10x_pbmc8k_sample_0_ingest.json deleted file mode 100644 index ed058ed81..000000000 --- a/schema_test_files/10x_pbmc8k_sample_0_ingest.json +++ /dev/null @@ -1,28 +0,0 @@ -{ - "core" : { - "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", - "submissionDate": "2017-10-13T09:18:49.422Z", - "updateDate": "2017-10-13T09:19:40.069Z", - "accession": "SAM0888697" - }, - "content" : { - "core" : { - "schema_version" : "4.0.0", - "type" : "sample" - }, - "sample_id": "s1", - "name": "PBMCs", - "description": "peripheral blood mononuclear cells (PBMCs)", - "ncbi_taxon_id": 9606, - "specimen_from_organism" : { - "organ": { - "text": "blood", - "ontology": "UBERON_0000178" - }, - "body_part": { - "text": "peripheral blood mononuclear cells (PBMCs)" - } - }, - "derived_from": "d1" - } -} \ No newline at end of file diff --git a/schema_test_files/10x_pbmc8k_sample_bundle.json b/schema_test_files/10x_pbmc8k_sample_bundle.json index 74c936c2d..8c2fb6a35 100644 --- a/schema_test_files/10x_pbmc8k_sample_bundle.json +++ b/schema_test_files/10x_pbmc8k_sample_bundle.json @@ -1,55 +1,55 @@ [ { - "core": { - "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", - "submissionDate": "2017-10-13T09:18:49.422Z", - "updateDate": "2017-10-13T09:19:40.069Z", - "accession": "SAM0888697" + "hca_ingest": { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d0", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0888697" + }, + "content": { + "core" : { + "schema_version" : "4.0.0", + "type" : "sample" + }, + "sample_id": "d1", + "donor" : { + "is_living": true, + "life_stage": "adult" }, - "content": { - "core" : { - "schema_version" : "4.0.0", - "type" : "sample" - }, - "sample_id": "d1", - "donor" : { - "is_living": true, - "life_stage": "adult" - }, - "ncbi_taxon_id": 9606, - "genus_species": { - "text": "Homo sapiens", - "ontology": "NCBITAXON_9606" - } + "ncbi_taxon_id": 9606, + "genus_species": { + "text": "Homo sapiens", + "ontology": "NCBITAXON_9606" } - }, + } + }, { + "hca_ingest" : { + "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", + "submissionDate": "2017-10-13T09:18:49.422Z", + "updateDate": "2017-10-13T09:19:40.069Z", + "accession": "SAM0999697" + }, + "content" : { "core" : { - "document_id": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1", - "submissionDate": "2017-10-13T09:18:49.422Z", - "updateDate": "2017-10-13T09:19:40.069Z", - "accession": "SAM0999697" + "schema_version" : "4.0.0", + "type" : "sample" }, - "content" : { - "core" : { - "schema_version" : "4.0.0", - "type" : "sample" - }, - "sample_id": "s1", - "name": "PBMCs", - "description": "peripheral blood mononuclear cells (PBMCs)", - "ncbi_taxon_id": 9606, - "specimen_from_organism" : { - "organ": { - "text": "blood", - "ontology": "UBERON_0000178" - }, - "body_part": { - "text": "peripheral blood mononuclear cells (PBMCs)" - } - }, - "derived_from": "d1" + "sample_id": "s1", + "name": "PBMCs", + "description": "peripheral blood mononuclear cells (PBMCs)", + "ncbi_taxon_id": 9606, + "specimen_from_organism" : { + "organ": { + "text": "blood", + "ontology": "UBERON_0000178" + }, + "body_part": { + "text": "peripheral blood mononuclear cells (PBMCs)" + } }, - "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1" + "derived_from": "d1" + }, + "derived_from": "a37dbd93-b93a-4838-a7bb-cd0796b3d9d1" } ] diff --git a/src/sample_test.py b/src/sample_test.py index 4591dafba..f7bbed5b1 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -16,14 +16,7 @@ sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') validate(sv, sfo1) -# -sample_ingest_validator = get_validator('sample_ingest.json', base_uri) -sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0_ingest.json') -validate(sample_ingest_validator, sample_ingest_file) -sample_ingest_file = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0_ingest.json') -validate(sample_ingest_validator, sample_ingest_file) -# sample_bundle_validator = get_validator('sample_bundle.json', base_uri) sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') validate(sample_bundle_validator, sample_bundle_file) From f9f22fe3ebc16c6b118f498caa3b0317bafd7bce Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 11:51:26 +0000 Subject: [PATCH 105/128] Added file.json schema --- json_schema/file.json | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 json_schema/file.json diff --git a/json_schema/file.json b/json_schema/file.json new file mode 100644 index 000000000..ac8fe1535 --- /dev/null +++ b/json_schema/file.json @@ -0,0 +1,33 @@ +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": false, + "description": "Information about the data files produced from single cells.", + "title": "file", + "type": "object", + "properties": { + "filename": { + "description": "A filename for a data file. Must have a valid extension.", + "pattern": "^.*.fastq$|^.*.fastq.gz$|^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", + "type": "string" + }, + "file_format": { + "description": "The format that the data file is in. Must be one of: fastq, fastq.gz, tiff, jpg, png." + "enum": [ + "fastq", + "fastq.gz", + "tiff", + "jpg", + "png" + ] + }, + "sample_id" : { + "type" : "string", + "description" : "The ID of the sample from which the data file was generated.", + }, + + }, + "required": [ + "filename", + "sample_id" + ] +} From 3a39e45364cf02f879c5f7f32f32177e5cbcd09c Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 12:06:46 +0000 Subject: [PATCH 106/128] Added print statement to test.py --- src/test.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/test.py b/src/test.py index d36a7d96c..aa67a954e 100644 --- a/src/test.py +++ b/src/test.py @@ -18,6 +18,7 @@ valid = True for s in schemas_to_test: - test_local(path_to_schema_dir = path_to_schemas , + print("Checking whether %s.json is a valid json schema" % s) + test_local(path_to_schema_dir = path_to_schemas , schema_file = s + '.json', test_dir = path_to_test + s + '/pass/') \ No newline at end of file From cf6cef7d4244d4888de27b3ed7361d449992fb8a Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 14:16:02 +0000 Subject: [PATCH 107/128] Switched to sample_test.py in travis --- .travis.yml | 4 +++- src/sample_test.py | 16 +++++++++++++--- 2 files changed, 16 insertions(+), 4 deletions(-) diff --git a/.travis.yml b/.travis.yml index 4d8ec1701..7888dfd64 100644 --- a/.travis.yml +++ b/.travis.yml @@ -9,4 +9,6 @@ install: script: - cd src - - python test.py + # python test.py + ## temporary patch + - python sample_test.py diff --git a/src/sample_test.py b/src/sample_test.py index f7bbed5b1..d374ed5ad 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -5,18 +5,28 @@ # Simple first test - are json files in json_schema folder # valid json schema docs? +## Flag for tracking the exit status of validate() calls +status_flag = True + os.chdir('../json_schema') pwd = subprocess.check_output('pwd').decode("utf-8").rstrip() base_uri = "file://" + pwd + "/" print(base_uri) + sv = get_validator('sample.json', base_uri) dt1 = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0.json') # Specific schema tests to follow . -validate(sv, dt1) +if not validate(sv, dt1): ## will return False if fails (show return value) + status_flag = False sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') -validate(sv, sfo1) +if not validate(sv, sfo1): + status_flag = False sample_bundle_validator = get_validator('sample_bundle.json', base_uri) sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') -validate(sample_bundle_validator, sample_bundle_file) +if not validate(sample_bundle_validator, sample_bundle_file): + status_flag = False + +if not status_flag: + print('validate() failed.') \ No newline at end of file From 1729a0fc7a0bb83daaed452facc46034d0a5f8ff Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 14:52:41 +0000 Subject: [PATCH 108/128] Fixed single quote in protocol. Updated file.json and sample_test.py --- json_schema/file.json | 7 +++---- json_schema/protocol.json | 2 +- src/sample_test.py | 26 ++++++++++++++++++++++---- 3 files changed, 26 insertions(+), 9 deletions(-) diff --git a/json_schema/file.json b/json_schema/file.json index ac8fe1535..a09c0eb8b 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -11,7 +11,7 @@ "type": "string" }, "file_format": { - "description": "The format that the data file is in. Must be one of: fastq, fastq.gz, tiff, jpg, png." + "description": "The format that the data file is in. Must be one of: fastq, fastq.gz, tiff, jpg, png.", "enum": [ "fastq", "fastq.gz", @@ -22,9 +22,8 @@ }, "sample_id" : { "type" : "string", - "description" : "The ID of the sample from which the data file was generated.", - }, - + "description" : "The ID of the sample from which the data file was generated." + } }, "required": [ "filename", diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 7eef0750a..69a945a31 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -30,7 +30,7 @@ "type": "string" }, "retail_name": { - "description": "The retail name of the kit used. e.g SureCell WTA 3\' Library Prep Kit", + "description": "The retail name of the kit used. e.g SureCell WTA 3' Library Prep Kit", "type": "string" }, "type": { diff --git a/src/sample_test.py b/src/sample_test.py index d374ed5ad..2b96f8bb3 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -1,11 +1,12 @@ from schema_test_suite import get_validator, get_json_from_file, validate import os +import sys import subprocess # Simple first test - are json files in json_schema folder # valid json schema docs? -## Flag for tracking the exit status of validate() calls +# Flag for tracking the exit status of validate() calls status_flag = True os.chdir('../json_schema') @@ -13,20 +14,37 @@ base_uri = "file://" + pwd + "/" print(base_uri) +print('\nValidating sample.json') sv = get_validator('sample.json', base_uri) + +# Specific schema tests follow + +print('\nValidating schema_test_files/10x_pbmc8k_donor_0.json') dt1 = get_json_from_file('../schema_test_files/10x_pbmc8k_donor_0.json') -# Specific schema tests to follow . -if not validate(sv, dt1): ## will return False if fails (show return value) +if not validate(sv, dt1): # will return False if fails (show return value) status_flag = False +print('\nValidating schema_test_files/10x_pbmc8k_sample_0.json') sfo1 = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_0.json') if not validate(sv, sfo1): status_flag = False +print('\nValidating schema_tests/sample/fail/sample-test-current.json') +sf1 = get_json_from_file('../schema_tests/sample/fail/sample-test-current.json') +if not validate(sv, sf1): + status_flag = False + +# Specific bundle tests follow + +print('\nValidating sample_bundle.json') sample_bundle_validator = get_validator('sample_bundle.json', base_uri) + +print('\nValidating schema_test_files/10x_pbmc8k_sample_bundle.json') sample_bundle_file = get_json_from_file('../schema_test_files/10x_pbmc8k_sample_bundle.json') if not validate(sample_bundle_validator, sample_bundle_file): status_flag = False +# If any of the validate() calls failed, set exit status to 1 +# Without this line, failed validate() will result in exit status 0 if not status_flag: - print('validate() failed.') \ No newline at end of file + sys.exit(1) From 76959b76f67ceceb8e9eace8bd035106bfb1deb6 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 15:39:19 +0000 Subject: [PATCH 109/128] Added print statements to schema_test_suite.py --- src/schema_test_suite.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/schema_test_suite.py b/src/schema_test_suite.py index 56dbbb25c..b8abbd353 100644 --- a/src/schema_test_suite.py +++ b/src/schema_test_suite.py @@ -40,11 +40,12 @@ def get_validator(filename, base_uri = ''): def validate(validator, instance): """Validate an instance of a schema and report errors.""" if validator.is_valid(instance): - print("Passes") + print("Validation Passes") return True else: es = validator.iter_errors(instance) recurse_through_errors(es) + print("Validation Fails") return False def recurse_through_errors(es, level = 0): From f509bd27248eda46d7989a506141e59ab7ccfdfa Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Fri, 3 Nov 2017 15:58:33 +0000 Subject: [PATCH 110/128] Updated sample validation test --- src/sample_test.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/src/sample_test.py b/src/sample_test.py index 2b96f8bb3..56bcb5217 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -29,9 +29,10 @@ if not validate(sv, sfo1): status_flag = False -print('\nValidating schema_tests/sample/fail/sample-test-current.json') +print('\nValidating schema_tests/sample/fail/sample-test-current.json (This should fail)') sf1 = get_json_from_file('../schema_tests/sample/fail/sample-test-current.json') -if not validate(sv, sf1): +# This should fail. If it fails, keep status_flag = True +if validate(sv, sf1): status_flag = False # Specific bundle tests follow @@ -44,7 +45,8 @@ if not validate(sample_bundle_validator, sample_bundle_file): status_flag = False -# If any of the validate() calls failed, set exit status to 1 -# Without this line, failed validate() will result in exit status 0 +# If any of the validate() calls fail, set exit status to 1 +# Failed validate() calls on things that are supposed to fail will not affect exit status +# Without the following line, failed validate() will result in exit status 0, which is not desirable if not status_flag: sys.exit(1) From e26d00fe32950e66797a2f2dc6473b95c8ee84ae Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Mon, 6 Nov 2017 12:00:27 +0000 Subject: [PATCH 111/128] Added missing "submitters" property to project.json --- json_schema/project.json | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/json_schema/project.json b/json_schema/project.json index 7e7aa0bbe..5ba57e09c 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -81,6 +81,13 @@ }, "type": "array" }, + "submitters": { + "description": "List of people submitting data to the project.", + "items": { + "$ref": "contact.json" + }, + "type": "array" + }, "supplementary_files": { "description": "Project-level supplementary files. e.g. experimental design documents, lab spreadsheets, manuscripts in preparation.", "items": { From 16885d1575f4a5412b1836b52c13527fecdd3da7 Mon Sep 17 00:00:00 2001 From: David Osumi-Sutherland Date: Mon, 6 Nov 2017 15:09:46 +0000 Subject: [PATCH 112/128] Adding back simple schema checks Adding back test of all schema files for validity as JSON schema. 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ajv = new Ajv({allErrors: true}); - -var schema = { - "properties": { - "foo": { "type": "string" }, - "bar": { "type": "number", "maximum": 3 } - } -}; - -var validate = ajv.compile(schema); - -test({"foo": "abc", "bar": 2}); -test({"foo": 2, "bar": 4}); - -function test(data) { - var valid = validate(data); - if (valid) console.log('Valid!'); - else console.log('Invalid: ' + ajv.errorsText(validate.errors)); -} \ No newline at end of file diff --git a/src/js-validator/node_modules/ajv/LICENSE b/src/js-validator/node_modules/ajv/LICENSE deleted file mode 100644 index 810539685..000000000 --- a/src/js-validator/node_modules/ajv/LICENSE +++ /dev/null @@ -1,22 +0,0 @@ -The MIT License (MIT) - -Copyright (c) 2015 Evgeny Poberezkin - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. - diff --git a/src/js-validator/node_modules/ajv/README.md b/src/js-validator/node_modules/ajv/README.md deleted file mode 100644 index 384825cde..000000000 --- a/src/js-validator/node_modules/ajv/README.md +++ /dev/null @@ -1,1302 +0,0 @@ -Ajv logo - -# Ajv: Another JSON Schema Validator - -The fastest JSON Schema validator for Node.js and browser with draft 6 support. - - -[![Build Status](https://travis-ci.org/epoberezkin/ajv.svg?branch=master)](https://travis-ci.org/epoberezkin/ajv) -[![npm version](https://badge.fury.io/js/ajv.svg)](https://www.npmjs.com/package/ajv) -[![npm downloads](https://img.shields.io/npm/dm/ajv.svg)](https://www.npmjs.com/package/ajv) -[![Code Climate](https://codeclimate.com/github/epoberezkin/ajv/badges/gpa.svg)](https://codeclimate.com/github/epoberezkin/ajv) -[![Coverage Status](https://coveralls.io/repos/epoberezkin/ajv/badge.svg?branch=master&service=github)](https://coveralls.io/github/epoberezkin/ajv?branch=master) -[![Greenkeeper badge](https://badges.greenkeeper.io/epoberezkin/ajv.svg)](https://greenkeeper.io/) -[![Gitter](https://img.shields.io/gitter/room/ajv-validator/ajv.svg)](https://gitter.im/ajv-validator/ajv) - - -## Using version 5 - -[JSON Schema draft-06](https://trac.tools.ietf.org/html/draft-wright-json-schema-validation-01) is published. - -[Ajv version 5.0.0](https://github.com/epoberezkin/ajv/releases/tag/5.0.0) that supports draft-06 is released. It may require either migrating your schemas or updating your code (to continue using draft-04 and v5 schemas). - -__Please note__: To use Ajv with draft-04 schemas you need to explicitly add meta-schema to the validator instance: - -```javascript -ajv.addMetaSchema(require('ajv/lib/refs/json-schema-draft-04.json')); -``` - - -## Contents - -- [Performance](#performance) -- [Features](#features) -- [Getting started](#getting-started) -- [Frequently Asked Questions](https://github.com/epoberezkin/ajv/blob/master/FAQ.md) -- [Using in browser](#using-in-browser) -- [Command line interface](#command-line-interface) -- Validation - - [Keywords](#validation-keywords) - - [Formats](#formats) - - [Combining schemas with $ref](#ref) - - [$data reference](#data-reference) - - NEW: [$merge and $patch keywords](#merge-and-patch-keywords) - - [Defining custom keywords](#defining-custom-keywords) - - [Asynchronous schema compilation](#asynchronous-schema-compilation) - - [Asynchronous validation](#asynchronous-validation) -- Modifying data during validation - - [Filtering data](#filtering-data) - - [Assigning defaults](#assigning-defaults) - - [Coercing data types](#coercing-data-types) -- API - - [Methods](#api) - - [Options](#options) - - [Validation errors](#validation-errors) -- [Related packages](#related-packages) -- [Packages using Ajv](#some-packages-using-ajv) -- [Tests, Contributing, History, License](#tests) - - -## Performance - -Ajv generates code using [doT templates](https://github.com/olado/doT) to turn JSON schemas into super-fast validation functions that are efficient for v8 optimization. - -Currently Ajv is the fastest and the most standard compliant validator according to these benchmarks: - -- [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark) - 50% faster than the second place -- [jsck benchmark](https://github.com/pandastrike/jsck#benchmarks) - 20-190% faster -- [z-schema benchmark](https://rawgit.com/zaggino/z-schema/master/benchmark/results.html) -- [themis benchmark](https://cdn.rawgit.com/playlyfe/themis/master/benchmark/results.html) - - -Performance of different validators by [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark): - -[![performance](https://chart.googleapis.com/chart?chxt=x,y&cht=bhs&chco=76A4FB&chls=2.0&chbh=32,4,1&chs=600x416&chxl=-1:%7Cajv%7Cis-my-json-valid%7Cjsen%7Cschemasaurus%7Cthemis%7Cz-schema%7Cjsck%7Cjsonschema%7Cskeemas%7Ctv4%7Cjayschema&chd=t:100,68,61,22.8,17.6,6.6,2.7,0.9,0.7,0.4,0.1)](https://github.com/ebdrup/json-schema-benchmark/blob/master/README.md#performance) - - -## Features - -- Ajv implements full JSON Schema [draft 6](http://json-schema.org/) and draft 4 standards: - - all validation keywords (see [JSON Schema validation keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md)) - - full support of remote refs (remote schemas have to be added with `addSchema` or compiled to be available) - - support of circular references between schemas - - correct string lengths for strings with unicode pairs (can be turned off) - - [formats](#formats) defined by JSON Schema draft 4 standard and custom formats (can be turned off) - - [validates schemas against meta-schema](#api-validateschema) -- supports [browsers](#using-in-browser) and Node.js 0.10-8.x -- [asynchronous loading](#asynchronous-schema-compilation) of referenced schemas during compilation -- "All errors" validation mode with [option allErrors](#options) -- [error messages with parameters](#validation-errors) describing error reasons to allow creating custom error messages -- i18n error messages support with [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) package -- [filtering data](#filtering-data) from additional properties -- [assigning defaults](#assigning-defaults) to missing properties and items -- [coercing data](#coercing-data-types) to the types specified in `type` keywords -- [custom keywords](#defining-custom-keywords) -- draft-6 keywords `const`, `contains` and `propertyNames` -- draft-6 boolean schemas (`true`/`false` as a schema to always pass/fail). -- keywords `switch`, `patternRequired`, `formatMaximum` / `formatMinimum` and `formatExclusiveMaximum` / `formatExclusiveMinimum` from [JSON-schema extension proposals](https://github.com/json-schema/json-schema/wiki/v5-Proposals) with [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package -- [$data reference](#data-reference) to use values from the validated data as values for the schema keywords -- [asynchronous validation](#asynchronous-validation) of custom formats and keywords - -Currently Ajv is the only validator that passes all the tests from [JSON Schema Test Suite](https://github.com/json-schema/JSON-Schema-Test-Suite) (according to [json-schema-benchmark](https://github.com/ebdrup/json-schema-benchmark), apart from the test that requires that `1.0` is not an integer that is impossible to satisfy in JavaScript). - - -## Install - -``` -npm install ajv -``` - - -## Getting started - -Try it in the Node.js REPL: https://tonicdev.com/npm/ajv - - -The fastest validation call: - -```javascript -var Ajv = require('ajv'); -var ajv = new Ajv(); // options can be passed, e.g. {allErrors: true} -var validate = ajv.compile(schema); -var valid = validate(data); -if (!valid) console.log(validate.errors); -``` - -or with less code - -```javascript -// ... -var valid = ajv.validate(schema, data); -if (!valid) console.log(ajv.errors); -// ... -``` - -or - -```javascript -// ... -ajv.addSchema(schema, 'mySchema'); -var valid = ajv.validate('mySchema', data); -if (!valid) console.log(ajv.errorsText()); -// ... -``` - -See [API](#api) and [Options](#options) for more details. - -Ajv compiles schemas to functions and caches them in all cases (using schema serialized with [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) or a custom function as a key), so that the next time the same schema is used (not necessarily the same object instance) it won't be compiled again. - -The best performance is achieved when using compiled functions returned by `compile` or `getSchema` methods (there is no additional function call). - -__Please note__: every time a validation function or `ajv.validate` are called `errors` property is overwritten. You need to copy `errors` array reference to another variable if you want to use it later (e.g., in the callback). See [Validation errors](#validation-errors) - - -## Using in browser - -You can require Ajv directly from the code you browserify - in this case Ajv will be a part of your bundle. - -If you need to use Ajv in several bundles you can create a separate UMD bundle using `npm run bundle` script (thanks to [siddo420](https://github.com/siddo420)). - -Then you need to load Ajv in the browser: -```html - -``` - -This bundle can be used with different module systems; it creates global `Ajv` if no module system is found. - -The browser bundle is available on [cdnjs](https://cdnjs.com/libraries/ajv). - -Ajv is tested with these browsers: - -[![Sauce Test Status](https://saucelabs.com/browser-matrix/epoberezkin.svg)](https://saucelabs.com/u/epoberezkin) - -__Please note__: some frameworks, e.g. Dojo, may redefine global require in such way that is not compatible with CommonJS module format. In such case Ajv bundle has to be loaded before the framework and then you can use global Ajv (see issue [#234](https://github.com/epoberezkin/ajv/issues/234)). - - -## Command line interface - -CLI is available as a separate npm package [ajv-cli](https://github.com/jessedc/ajv-cli). It supports: - -- compiling JSON-schemas to test their validity -- BETA: generating standalone module exporting a validation function to be used without Ajv (using [ajv-pack](https://github.com/epoberezkin/ajv-pack)) -- migrate schemas to draft-06 (using [json-schema-migrate](https://github.com/epoberezkin/json-schema-migrate)) -- validating data file(s) against JSON-schema -- testing expected validity of data against JSON-schema -- referenced schemas -- custom meta-schemas -- files in JSON and JavaScript format -- all Ajv options -- reporting changes in data after validation in [JSON-patch](https://tools.ietf.org/html/rfc6902) format - - -## Validation keywords - -Ajv supports all validation keywords from draft 4 of JSON-schema standard: - -- [type](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#type) -- [for numbers](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-numbers) - maximum, minimum, exclusiveMaximum, exclusiveMinimum, multipleOf -- [for strings](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-strings) - maxLength, minLength, pattern, format -- [for arrays](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-arrays) - maxItems, minItems, uniqueItems, items, additionalItems, [contains](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#contains) -- [for objects](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-objects) - maxProperties, minProperties, required, properties, patternProperties, additionalProperties, dependencies, [propertyNames](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#propertynames) -- [for all types](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#keywords-for-all-types) - enum, [const](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#const) -- [compound keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#compound-keywords) - not, oneOf, anyOf, allOf - -With [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package Ajv also supports validation keywords from [JSON Schema extension proposals](https://github.com/json-schema/json-schema/wiki/v5-Proposals) for JSON-schema standard: - -- [switch](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#switch-proposed) - conditional validation with a sequence of if/then clauses -- [patternRequired](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#patternrequired-proposed) - like `required` but with patterns that some property should match. -- [formatMaximum, formatMinimum, formatExclusiveMaximum, formatExclusiveMinimum](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md#formatmaximum--formatminimum-and-exclusiveformatmaximum--exclusiveformatminimum-proposed) - setting limits for date, time, etc. - -See [JSON Schema validation keywords](https://github.com/epoberezkin/ajv/blob/master/KEYWORDS.md) for more details. - - -## Formats - -The following formats are supported for string validation with "format" keyword: - -- _date_: full-date according to [RFC3339](http://tools.ietf.org/html/rfc3339#section-5.6). -- _time_: time with optional time-zone. -- _date-time_: date-time from the same source (time-zone is mandatory). `date`, `time` and `date-time` validate ranges in `full` mode and only regexp in `fast` mode (see [options](#options)). -- _uri_: full uri with optional protocol. -- _url_: [URL record](https://url.spec.whatwg.org/#concept-url). -- _uri-template_: URI template according to [RFC6570](https://tools.ietf.org/html/rfc6570) -- _email_: email address. -- _hostname_: host name according to [RFC1034](http://tools.ietf.org/html/rfc1034#section-3.5). -- _ipv4_: IP address v4. -- _ipv6_: IP address v6. -- _regex_: tests whether a string is a valid regular expression by passing it to RegExp constructor. -- _uuid_: Universally Unique IDentifier according to [RFC4122](http://tools.ietf.org/html/rfc4122). -- _json-pointer_: JSON-pointer according to [RFC6901](https://tools.ietf.org/html/rfc6901). -- _relative-json-pointer_: relative JSON-pointer according to [this draft](http://tools.ietf.org/html/draft-luff-relative-json-pointer-00). - -There are two modes of format validation: `fast` and `full`. This mode affects formats `date`, `time`, `date-time`, `uri`, `email`, and `hostname`. See [Options](#options) for details. - -You can add additional formats and replace any of the formats above using [addFormat](#api-addformat) method. - -The option `unknownFormats` allows changing the default behaviour when an unknown format is encountered. In this case Ajv can either fail schema compilation (default) or ignore it (default in versions before 5.0.0). You also can whitelist specific format(s) to be ignored. See [Options](#options) for details. - -You can find patterns used for format validation and the sources that were used in [formats.js](https://github.com/epoberezkin/ajv/blob/master/lib/compile/formats.js). - - -## Combining schemas with $ref - -You can structure your validation logic across multiple schema files and have schemas reference each other using `$ref` keyword. - -Example: - -```javascript -var schema = { - "$id": "http://example.com/schemas/schema.json", - "type": "object", - "properties": { - "foo": { "$ref": "defs.json#/definitions/int" }, - "bar": { "$ref": "defs.json#/definitions/str" } - } -}; - -var defsSchema = { - "$id": "http://example.com/schemas/defs.json", - "definitions": { - "int": { "type": "integer" }, - "str": { "type": "string" } - } -}; -``` - -Now to compile your schema you can either pass all schemas to Ajv instance: - -```javascript -var ajv = new Ajv({schemas: [schema, defsSchema]}); -var validate = ajv.getSchema('http://example.com/schemas/schema.json'); -``` - -or use `addSchema` method: - -```javascript -var ajv = new Ajv; -ajv.addSchema(defsSchema); -var validate = ajv.compile(schema); -``` - -See [Options](#options) and [addSchema](#api) method. - -__Please note__: -- `$ref` is resolved as the uri-reference using schema $id as the base URI (see the example). -- References can be recursive (and mutually recursive) to implement the schemas for different data structures (such as linked lists, trees, graphs, etc.). -- You don't have to host your schema files at the URIs that you use as schema $id. These URIs are only used to identify the schemas, and according to JSON Schema specification validators should not expect to be able to download the schemas from these URIs. -- The actual location of the schema file in the file system is not used. -- You can pass the identifier of the schema as the second parameter of `addSchema` method or as a property name in `schemas` option. This identifier can be used instead of (or in addition to) schema $id. -- You cannot have the same $id (or the schema identifier) used for more than one schema - the exception will be thrown. -- You can implement dynamic resolution of the referenced schemas using `compileAsync` method. In this way you can store schemas in any system (files, web, database, etc.) and reference them without explicitly adding to Ajv instance. See [Asynchronous schema compilation](#asynchronous-schema-compilation). - - -## $data reference - -With `$data` option you can use values from the validated data as the values for the schema keywords. See [proposal](https://github.com/json-schema/json-schema/wiki/$data-(v5-proposal)) for more information about how it works. - -`$data` reference is supported in the keywords: const, enum, format, maximum/minimum, exclusiveMaximum / exclusiveMinimum, maxLength / minLength, maxItems / minItems, maxProperties / minProperties, formatMaximum / formatMinimum, formatExclusiveMaximum / formatExclusiveMinimum, multipleOf, pattern, required, uniqueItems. - -The value of "$data" should be a [JSON-pointer](https://tools.ietf.org/html/rfc6901) to the data (the root is always the top level data object, even if the $data reference is inside a referenced subschema) or a [relative JSON-pointer](http://tools.ietf.org/html/draft-luff-relative-json-pointer-00) (it is relative to the current point in data; if the $data reference is inside a referenced subschema it cannot point to the data outside of the root level for this subschema). - -Examples. - -This schema requires that the value in property `smaller` is less or equal than the value in the property larger: - -```javascript -var ajv = new Ajv({$data: true}); - -var schema = { - "properties": { - "smaller": { - "type": "number", - "maximum": { "$data": "1/larger" } - }, - "larger": { "type": "number" } - } -}; - -var validData = { - smaller: 5, - larger: 7 -}; - -ajv.validate(schema, validData); // true -``` - -This schema requires that the properties have the same format as their field names: - -```javascript -var schema = { - "additionalProperties": { - "type": "string", - "format": { "$data": "0#" } - } -}; - -var validData = { - 'date-time': '1963-06-19T08:30:06.283185Z', - email: 'joe.bloggs@example.com' -} -``` - -`$data` reference is resolved safely - it won't throw even if some property is undefined. If `$data` resolves to `undefined` the validation succeeds (with the exclusion of `const` keyword). If `$data` resolves to incorrect type (e.g. not "number" for maximum keyword) the validation fails. - - -## $merge and $patch keywords - -With the package [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) you can use the keywords `$merge` and `$patch` that allow extending JSON-schemas with patches using formats [JSON Merge Patch (RFC 7396)](https://tools.ietf.org/html/rfc7396) and [JSON Patch (RFC 6902)](https://tools.ietf.org/html/rfc6902). - -To add keywords `$merge` and `$patch` to Ajv instance use this code: - -```javascript -require('ajv-merge-patch')(ajv); -``` - -Examples. - -Using `$merge`: - -```json -{ - "$merge": { - "source": { - "type": "object", - "properties": { "p": { "type": "string" } }, - "additionalProperties": false - }, - "with": { - "properties": { "q": { "type": "number" } } - } - } -} -``` - -Using `$patch`: - -```json -{ - "$patch": { - "source": { - "type": "object", - "properties": { "p": { "type": "string" } }, - "additionalProperties": false - }, - "with": [ - { "op": "add", "path": "/properties/q", "value": { "type": "number" } } - ] - } -} -``` - -The schemas above are equivalent to this schema: - -```json -{ - "type": "object", - "properties": { - "p": { "type": "string" }, - "q": { "type": "number" } - }, - "additionalProperties": false -} -``` - -The properties `source` and `with` in the keywords `$merge` and `$patch` can use absolute or relative `$ref` to point to other schemas previously added to the Ajv instance or to the fragments of the current schema. - -See the package [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) for more information. - - -## Defining custom keywords - -The advantages of using custom keywords are: - -- allow creating validation scenarios that cannot be expressed using JSON Schema -- simplify your schemas -- help bringing a bigger part of the validation logic to your schemas -- make your schemas more expressive, less verbose and closer to your application domain -- implement custom data processors that modify your data (`modifying` option MUST be used in keyword definition) and/or create side effects while the data is being validated - -If a keyword is used only for side-effects and its validation result is pre-defined, use option `valid: true/false` in keyword definition to simplify both generated code (no error handling in case of `valid: true`) and your keyword functions (no need to return any validation result). - -The concerns you have to be aware of when extending JSON-schema standard with custom keywords are the portability and understanding of your schemas. You will have to support these custom keywords on other platforms and to properly document these keywords so that everybody can understand them in your schemas. - -You can define custom keywords with [addKeyword](#api-addkeyword) method. Keywords are defined on the `ajv` instance level - new instances will not have previously defined keywords. - -Ajv allows defining keywords with: -- validation function -- compilation function -- macro function -- inline compilation function that should return code (as string) that will be inlined in the currently compiled schema. - -Example. `range` and `exclusiveRange` keywords using compiled schema: - -```javascript -ajv.addKeyword('range', { type: 'number', compile: function (sch, parentSchema) { - var min = sch[0]; - var max = sch[1]; - - return parentSchema.exclusiveRange === true - ? function (data) { return data > min && data < max; } - : function (data) { return data >= min && data <= max; } -} }); - -var schema = { "range": [2, 4], "exclusiveRange": true }; -var validate = ajv.compile(schema); -console.log(validate(2.01)); // true -console.log(validate(3.99)); // true -console.log(validate(2)); // false -console.log(validate(4)); // false -``` - -Several custom keywords (typeof, instanceof, range and propertyNames) are defined in [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package - they can be used for your schemas and as a starting point for your own custom keywords. - -See [Defining custom keywords](https://github.com/epoberezkin/ajv/blob/master/CUSTOM.md) for more details. - - -## Asynchronous schema compilation - -During asynchronous compilation remote references are loaded using supplied function. See `compileAsync` [method](#api-compileAsync) and `loadSchema` [option](#options). - -Example: - -```javascript -var ajv = new Ajv({ loadSchema: loadSchema }); - -ajv.compileAsync(schema).then(function (validate) { - var valid = validate(data); - // ... -}); - -function loadSchema(uri) { - return request.json(uri).then(function (res) { - if (res.statusCode >= 400) - throw new Error('Loading error: ' + res.statusCode); - return res.body; - }); -} -``` - -__Please note__: [Option](#options) `missingRefs` should NOT be set to `"ignore"` or `"fail"` for asynchronous compilation to work. - - -## Asynchronous validation - -Example in Node.js REPL: https://tonicdev.com/esp/ajv-asynchronous-validation - -You can define custom formats and keywords that perform validation asynchronously by accessing database or some other service. You should add `async: true` in the keyword or format definition (see [addFormat](#api-addformat), [addKeyword](#api-addkeyword) and [Defining custom keywords](#defining-custom-keywords)). - -If your schema uses asynchronous formats/keywords or refers to some schema that contains them it should have `"$async": true` keyword so that Ajv can compile it correctly. If asynchronous format/keyword or reference to asynchronous schema is used in the schema without `$async` keyword Ajv will throw an exception during schema compilation. - -__Please note__: all asynchronous subschemas that are referenced from the current or other schemas should have `"$async": true` keyword as well, otherwise the schema compilation will fail. - -Validation function for an asynchronous custom format/keyword should return a promise that resolves with `true` or `false` (or rejects with `new Ajv.ValidationError(errors)` if you want to return custom errors from the keyword function). Ajv compiles asynchronous schemas to either [es7 async functions](http://tc39.github.io/ecmascript-asyncawait/) that can optionally be transpiled with [nodent](https://github.com/MatAtBread/nodent) or with [regenerator](https://github.com/facebook/regenerator) or to [generator functions](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Statements/function*) that can be optionally transpiled with regenerator as well. You can also supply any other transpiler as a function. See [Options](#options). - -The compiled validation function has `$async: true` property (if the schema is asynchronous), so you can differentiate these functions if you are using both synchronous and asynchronous schemas. - -If you are using generators, the compiled validation function can be either wrapped with [co](https://github.com/tj/co) (default) or returned as generator function, that can be used directly, e.g. in [koa](http://koajs.com/) 1.0. `co` is a small library, it is included in Ajv (both as npm dependency and in the browser bundle). - -Async functions are currently supported in Chrome 55, Firefox 52, Node.js 7 (with --harmony-async-await) and MS Edge 13 (with flag). - -Generator functions are currently supported in Chrome, Firefox and Node.js. - -If you are using Ajv in other browsers or in older versions of Node.js you should use one of available transpiling options. All provided async modes use global Promise class. If your platform does not have Promise you should use a polyfill that defines it. - -Validation result will be a promise that resolves with validated data or rejects with an exception `Ajv.ValidationError` that contains the array of validation errors in `errors` property. - - -Example: - -```javascript -/** - * Default mode is non-transpiled generator function wrapped with `co`. - * Using package ajv-async (https://github.com/epoberezkin/ajv-async) - * you can auto-detect the best async mode. - * In this case, without "async" and "transpile" options - * (or with option {async: true}) - * Ajv will choose the first supported/installed option in this order: - * 1. native async function - * 2. native generator function wrapped with co - * 3. es7 async functions transpiled with nodent - * 4. es7 async functions transpiled with regenerator - */ - -var setupAsync = require('ajv-async'); -var ajv = setupAsync(new Ajv); - -ajv.addKeyword('idExists', { - async: true, - type: 'number', - validate: checkIdExists -}); - - -function checkIdExists(schema, data) { - return knex(schema.table) - .select('id') - .where('id', data) - .then(function (rows) { - return !!rows.length; // true if record is found - }); -} - -var schema = { - "$async": true, - "properties": { - "userId": { - "type": "integer", - "idExists": { "table": "users" } - }, - "postId": { - "type": "integer", - "idExists": { "table": "posts" } - } - } -}; - -var validate = ajv.compile(schema); - -validate({ userId: 1, postId: 19 }) -.then(function (data) { - console.log('Data is valid', data); // { userId: 1, postId: 19 } -}) -.catch(function (err) { - if (!(err instanceof Ajv.ValidationError)) throw err; - // data is invalid - console.log('Validation errors:', err.errors); -}); -``` - -### Using transpilers with asynchronous validation functions. - -To use a transpiler you should separately install it (or load its bundle in the browser). - -Ajv npm package includes minified browser bundles of regenerator and nodent in dist folder. - - -#### Using nodent - -```javascript -var setupAsync = require('ajv-async'); -var ajv = new Ajv({ /* async: 'es7', */ transpile: 'nodent' }); -setupAsync(ajv); -var validate = ajv.compile(schema); // transpiled es7 async function -validate(data).then(successFunc).catch(errorFunc); -``` - -`npm install nodent` or use `nodent.min.js` from dist folder of npm package. - - -#### Using regenerator - -```javascript -var setupAsync = require('ajv-async'); -var ajv = new Ajv({ /* async: 'es7', */ transpile: 'regenerator' }); -setupAsync(ajv); -var validate = ajv.compile(schema); // transpiled es7 async function -validate(data).then(successFunc).catch(errorFunc); -``` - -`npm install regenerator` or use `regenerator.min.js` from dist folder of npm package. - - -#### Using other transpilers - -```javascript -var ajv = new Ajv({ async: 'es7', processCode: transpileFunc }); -var validate = ajv.compile(schema); // transpiled es7 async function -validate(data).then(successFunc).catch(errorFunc); -``` - -See [Options](#options). - - -#### Comparison of async modes - -|mode|transpile
speed*|run-time
speed*|bundle
size| -|---|:-:|:-:|:-:| -|es7 async
(native)|-|0.75|-| -|generators
(native)|-|1.0|-| -|es7.nodent|1.35|1.1|215Kb| -|es7.regenerator|1.0|2.7|1109Kb| -|regenerator|1.0|3.2|1109Kb| - -\* Relative performance in Node.js 7.x — smaller is better. - -[nodent](https://github.com/MatAtBread/nodent) has several advantages: - -- much smaller browser bundle than regenerator -- almost the same performance of generated code as native generators in Node.js and the latest Chrome -- much better performance than native generators in other browsers -- works in IE 9 (regenerator does not) - - -## Filtering data - -With [option `removeAdditional`](#options) (added by [andyscott](https://github.com/andyscott)) you can filter data during the validation. - -This option modifies original data. - -Example: - -```javascript -var ajv = new Ajv({ removeAdditional: true }); -var schema = { - "additionalProperties": false, - "properties": { - "foo": { "type": "number" }, - "bar": { - "additionalProperties": { "type": "number" }, - "properties": { - "baz": { "type": "string" } - } - } - } -} - -var data = { - "foo": 0, - "additional1": 1, // will be removed; `additionalProperties` == false - "bar": { - "baz": "abc", - "additional2": 2 // will NOT be removed; `additionalProperties` != false - }, -} - -var validate = ajv.compile(schema); - -console.log(validate(data)); // true -console.log(data); // { "foo": 0, "bar": { "baz": "abc", "additional2": 2 } -``` - -If `removeAdditional` option in the example above were `"all"` then both `additional1` and `additional2` properties would have been removed. - -If the option were `"failing"` then property `additional1` would have been removed regardless of its value and property `additional2` would have been removed only if its value were failing the schema in the inner `additionalProperties` (so in the example above it would have stayed because it passes the schema, but any non-number would have been removed). - -__Please note__: If you use `removeAdditional` option with `additionalProperties` keyword inside `anyOf`/`oneOf` keywords your validation can fail with this schema, for example: - -```json -{ - "type": "object", - "oneOf": [ - { - "properties": { - "foo": { "type": "string" } - }, - "required": [ "foo" ], - "additionalProperties": false - }, - { - "properties": { - "bar": { "type": "integer" } - }, - "required": [ "bar" ], - "additionalProperties": false - } - ] -} -``` - -The intention of the schema above is to allow objects with either the string property "foo" or the integer property "bar", but not with both and not with any other properties. - -With the option `removeAdditional: true` the validation will pass for the object `{ "foo": "abc"}` but will fail for the object `{"bar": 1}`. It happens because while the first subschema in `oneOf` is validated, the property `bar` is removed because it is an additional property according to the standard (because it is not included in `properties` keyword in the same schema). - -While this behaviour is unexpected (issues [#129](https://github.com/epoberezkin/ajv/issues/129), [#134](https://github.com/epoberezkin/ajv/issues/134)), it is correct. To have the expected behaviour (both objects are allowed and additional properties are removed) the schema has to be refactored in this way: - -```json -{ - "type": "object", - "properties": { - "foo": { "type": "string" }, - "bar": { "type": "integer" } - }, - "additionalProperties": false, - "oneOf": [ - { "required": [ "foo" ] }, - { "required": [ "bar" ] } - ] -} -``` - -The schema above is also more efficient - it will compile into a faster function. - - -## Assigning defaults - -With [option `useDefaults`](#options) Ajv will assign values from `default` keyword in the schemas of `properties` and `items` (when it is the array of schemas) to the missing properties and items. - -This option modifies original data. - -__Please note__: by default the default value is inserted in the generated validation code as a literal (starting from v4.0), so the value inserted in the data will be the deep clone of the default in the schema. - -If you need to insert the default value in the data by reference pass the option `useDefaults: "shared"`. - -Inserting defaults by reference can be faster (in case you have an object in `default`) and it allows to have dynamic values in defaults, e.g. timestamp, without recompiling the schema. The side effect is that modifying the default value in any validated data instance will change the default in the schema and in other validated data instances. See example 3 below. - - -Example 1 (`default` in `properties`): - -```javascript -var ajv = new Ajv({ useDefaults: true }); -var schema = { - "type": "object", - "properties": { - "foo": { "type": "number" }, - "bar": { "type": "string", "default": "baz" } - }, - "required": [ "foo", "bar" ] -}; - -var data = { "foo": 1 }; - -var validate = ajv.compile(schema); - -console.log(validate(data)); // true -console.log(data); // { "foo": 1, "bar": "baz" } -``` - -Example 2 (`default` in `items`): - -```javascript -var schema = { - "type": "array", - "items": [ - { "type": "number" }, - { "type": "string", "default": "foo" } - ] -} - -var data = [ 1 ]; - -var validate = ajv.compile(schema); - -console.log(validate(data)); // true -console.log(data); // [ 1, "foo" ] -``` - -Example 3 (inserting "defaults" by reference): - -```javascript -var ajv = new Ajv({ useDefaults: 'shared' }); - -var schema = { - properties: { - foo: { - default: { bar: 1 } - } - } -} - -var validate = ajv.compile(schema); - -var data = {}; -console.log(validate(data)); // true -console.log(data); // { foo: { bar: 1 } } - -data.foo.bar = 2; - -var data2 = {}; -console.log(validate(data2)); // true -console.log(data2); // { foo: { bar: 2 } } -``` - -`default` keywords in other cases are ignored: - -- not in `properties` or `items` subschemas -- in schemas inside `anyOf`, `oneOf` and `not` (see [#42](https://github.com/epoberezkin/ajv/issues/42)) -- in `if` subschema of `switch` keyword -- in schemas generated by custom macro keywords - - -## Coercing data types - -When you are validating user inputs all your data properties are usually strings. The option `coerceTypes` allows you to have your data types coerced to the types specified in your schema `type` keywords, both to pass the validation and to use the correctly typed data afterwards. - -This option modifies original data. - -__Please note__: if you pass a scalar value to the validating function its type will be coerced and it will pass the validation, but the value of the variable you pass won't be updated because scalars are passed by value. - - -Example 1: - -```javascript -var ajv = new Ajv({ coerceTypes: true }); -var schema = { - "type": "object", - "properties": { - "foo": { "type": "number" }, - "bar": { "type": "boolean" } - }, - "required": [ "foo", "bar" ] -}; - -var data = { "foo": "1", "bar": "false" }; - -var validate = ajv.compile(schema); - -console.log(validate(data)); // true -console.log(data); // { "foo": 1, "bar": false } -``` - -Example 2 (array coercions): - -```javascript -var ajv = new Ajv({ coerceTypes: 'array' }); -var schema = { - "properties": { - "foo": { "type": "array", "items": { "type": "number" } }, - "bar": { "type": "boolean" } - } -}; - -var data = { "foo": "1", "bar": ["false"] }; - -var validate = ajv.compile(schema); - -console.log(validate(data)); // true -console.log(data); // { "foo": [1], "bar": false } -``` - -The coercion rules, as you can see from the example, are different from JavaScript both to validate user input as expected and to have the coercion reversible (to correctly validate cases where different types are defined in subschemas of "anyOf" and other compound keywords). - -See [Coercion rules](https://github.com/epoberezkin/ajv/blob/master/COERCION.md) for details. - - -## API - -##### new Ajv(Object options) -> Object - -Create Ajv instance. - - -##### .compile(Object schema) -> Function<Object data> - -Generate validating function and cache the compiled schema for future use. - -Validating function returns boolean and has properties `errors` with the errors from the last validation (`null` if there were no errors) and `schema` with the reference to the original schema. - -Unless the option `validateSchema` is false, the schema will be validated against meta-schema and if schema is invalid the error will be thrown. See [options](#options). - - -##### .compileAsync(Object schema [, Boolean meta] [, Function callback]) -> Promise - -Asynchronous version of `compile` method that loads missing remote schemas using asynchronous function in `options.loadSchema`. This function returns a Promise that resolves to a validation function. An optional callback passed to `compileAsync` will be called with 2 parameters: error (or null) and validating function. The returned promise will reject (and the callback will be called with an error) when: - -- missing schema can't be loaded (`loadSchema` returns a Promise that rejects). -- a schema containing a missing reference is loaded, but the reference cannot be resolved. -- schema (or some loaded/referenced schema) is invalid. - -The function compiles schema and loads the first missing schema (or meta-schema) until all missing schemas are loaded. - -You can asynchronously compile meta-schema by passing `true` as the second parameter. - -See example in [Asynchronous compilation](#asynchronous-schema-compilation). - - -##### .validate(Object schema|String key|String ref, data) -> Boolean - -Validate data using passed schema (it will be compiled and cached). - -Instead of the schema you can use the key that was previously passed to `addSchema`, the schema id if it was present in the schema or any previously resolved reference. - -Validation errors will be available in the `errors` property of Ajv instance (`null` if there were no errors). - -__Please note__: every time this method is called the errors are overwritten so you need to copy them to another variable if you want to use them later. - -If the schema is asynchronous (has `$async` keyword on the top level) this method returns a Promise. See [Asynchronous validation](#asynchronous-validation). - - -##### .addSchema(Array<Object>|Object schema [, String key]) - -Add schema(s) to validator instance. This method does not compile schemas (but it still validates them). Because of that dependencies can be added in any order and circular dependencies are supported. It also prevents unnecessary compilation of schemas that are containers for other schemas but not used as a whole. - -Array of schemas can be passed (schemas should have ids), the second parameter will be ignored. - -Key can be passed that can be used to reference the schema and will be used as the schema id if there is no id inside the schema. If the key is not passed, the schema id will be used as the key. - - -Once the schema is added, it (and all the references inside it) can be referenced in other schemas and used to validate data. - -Although `addSchema` does not compile schemas, explicit compilation is not required - the schema will be compiled when it is used first time. - -By default the schema is validated against meta-schema before it is added, and if the schema does not pass validation the exception is thrown. This behaviour is controlled by `validateSchema` option. - - -##### .addMetaSchema(Array<Object>|Object schema [, String key]) - -Adds meta schema(s) that can be used to validate other schemas. That function should be used instead of `addSchema` because there may be instance options that would compile a meta schema incorrectly (at the moment it is `removeAdditional` option). - -There is no need to explicitly add draft 6 meta schema (http://json-schema.org/draft-06/schema and http://json-schema.org/schema) - it is added by default, unless option `meta` is set to `false`. You only need to use it if you have a changed meta-schema that you want to use to validate your schemas. See `validateSchema`. - - -##### .validateSchema(Object schema) -> Boolean - -Validates schema. This method should be used to validate schemas rather than `validate` due to the inconsistency of `uri` format in JSON Schema standard. - -By default this method is called automatically when the schema is added, so you rarely need to use it directly. - -If schema doesn't have `$schema` property, it is validated against draft 6 meta-schema (option `meta` should not be false). - -If schema has `$schema` property, then the schema with this id (that should be previously added) is used to validate passed schema. - -Errors will be available at `ajv.errors`. - - -##### .getSchema(String key) -> Function<Object data> - -Retrieve compiled schema previously added with `addSchema` by the key passed to `addSchema` or by its full reference (id). The returned validating function has `schema` property with the reference to the original schema. - - -##### .removeSchema([Object schema|String key|String ref|RegExp pattern]) - -Remove added/cached schema. Even if schema is referenced by other schemas it can be safely removed as dependent schemas have local references. - -Schema can be removed using: -- key passed to `addSchema` -- it's full reference (id) -- RegExp that should match schema id or key (meta-schemas won't be removed) -- actual schema object that will be stable-stringified to remove schema from cache - -If no parameter is passed all schemas but meta-schemas will be removed and the cache will be cleared. - - -##### .addFormat(String name, String|RegExp|Function|Object format) - -Add custom format to validate strings or numbers. It can also be used to replace pre-defined formats for Ajv instance. - -Strings are converted to RegExp. - -Function should return validation result as `true` or `false`. - -If object is passed it should have properties `validate`, `compare` and `async`: - -- _validate_: a string, RegExp or a function as described above. -- _compare_: an optional comparison function that accepts two strings and compares them according to the format meaning. This function is used with keywords `formatMaximum`/`formatMinimum` (defined in [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) package). It should return `1` if the first value is bigger than the second value, `-1` if it is smaller and `0` if it is equal. -- _async_: an optional `true` value if `validate` is an asynchronous function; in this case it should return a promise that resolves with a value `true` or `false`. -- _type_: an optional type of data that the format applies to. It can be `"string"` (default) or `"number"` (see https://github.com/epoberezkin/ajv/issues/291#issuecomment-259923858). If the type of data is different, the validation will pass. - -Custom formats can be also added via `formats` option. - - -##### .addKeyword(String keyword, Object definition) - -Add custom validation keyword to Ajv instance. - -Keyword should be different from all standard JSON schema keywords and different from previously defined keywords. There is no way to redefine keywords or to remove keyword definition from the instance. - -Keyword must start with a letter, `_` or `$`, and may continue with letters, numbers, `_`, `$`, or `-`. -It is recommended to use an application-specific prefix for keywords to avoid current and future name collisions. - -Example Keywords: -- `"xyz-example"`: valid, and uses prefix for the xyz project to avoid name collisions. -- `"example"`: valid, but not recommended as it could collide with future versions of JSON schema etc. -- `"3-example"`: invalid as numbers are not allowed to be the first character in a keyword - -Keyword definition is an object with the following properties: - -- _type_: optional string or array of strings with data type(s) that the keyword applies to. If not present, the keyword will apply to all types. -- _validate_: validating function -- _compile_: compiling function -- _macro_: macro function -- _inline_: compiling function that returns code (as string) -- _schema_: an optional `false` value used with "validate" keyword to not pass schema -- _metaSchema_: an optional meta-schema for keyword schema -- _modifying_: `true` MUST be passed if keyword modifies data -- _valid_: pass `true`/`false` to pre-define validation result, the result returned from validation function will be ignored. This option cannot be used with macro keywords. -- _$data_: an optional `true` value to support [$data reference](#data-reference) as the value of custom keyword. The reference will be resolved at validation time. If the keyword has meta-schema it would be extended to allow $data and it will be used to validate the resolved value. Supporting $data reference requires that keyword has validating function (as the only option or in addition to compile, macro or inline function). -- _async_: an optional `true` value if the validation function is asynchronous (whether it is compiled or passed in _validate_ property); in this case it should return a promise that resolves with a value `true` or `false`. This option is ignored in case of "macro" and "inline" keywords. -- _errors_: an optional boolean indicating whether keyword returns errors. If this property is not set Ajv will determine if the errors were set in case of failed validation. - -_compile_, _macro_ and _inline_ are mutually exclusive, only one should be used at a time. _validate_ can be used separately or in addition to them to support $data reference. - -__Please note__: If the keyword is validating data type that is different from the type(s) in its definition, the validation function will not be called (and expanded macro will not be used), so there is no need to check for data type inside validation function or inside schema returned by macro function (unless you want to enforce a specific type and for some reason do not want to use a separate `type` keyword for that). In the same way as standard keywords work, if the keyword does not apply to the data type being validated, the validation of this keyword will succeed. - -See [Defining custom keywords](#defining-custom-keywords) for more details. - - -##### .getKeyword(String keyword) -> Object|Boolean - -Returns custom keyword definition, `true` for pre-defined keywords and `false` if the keyword is unknown. - - -##### .removeKeyword(String keyword) - -Removes custom or pre-defined keyword so you can redefine them. - -While this method can be used to extend pre-defined keywords, it can also be used to completely change their meaning - it may lead to unexpected results. - -__Please note__: schemas compiled before the keyword is removed will continue to work without changes. To recompile schemas use `removeSchema` method and compile them again. - - -##### .errorsText([Array<Object> errors [, Object options]]) -> String - -Returns the text with all errors in a String. - -Options can have properties `separator` (string used to separate errors, ", " by default) and `dataVar` (the variable name that dataPaths are prefixed with, "data" by default). - - -## Options - -Defaults: - -```javascript -{ - // validation and reporting options: - $data: false, - allErrors: false, - verbose: false, - jsonPointers: false, - uniqueItems: true, - unicode: true, - format: 'fast', - formats: {}, - unknownFormats: true, - schemas: {}, - // referenced schema options: - schemaId: undefined // recommended '$id' - missingRefs: true, - extendRefs: 'ignore', // recommended 'fail' - loadSchema: undefined, // function(uri: string): Promise {} - // options to modify validated data: - removeAdditional: false, - useDefaults: false, - coerceTypes: false, - // asynchronous validation options: - async: 'co*', - transpile: undefined, // requires ajv-async package - // advanced options: - meta: true, - validateSchema: true, - addUsedSchema: true, - inlineRefs: true, - passContext: false, - loopRequired: Infinity, - ownProperties: false, - multipleOfPrecision: false, - errorDataPath: 'object', - messages: true, - sourceCode: false, - processCode: undefined, // function (str: string): string {} - cache: new Cache, - serialize: undefined -} -``` - -##### Validation and reporting options - -- _$data_: support [$data references](#data-reference). Draft 6 meta-schema that is added by default will be extended to allow them. If you want to use another meta-schema you need to use $dataMetaSchema method to add support for $data reference. See [API](#api). -- _allErrors_: check all rules collecting all errors. Default is to return after the first error. -- _verbose_: include the reference to the part of the schema (`schema` and `parentSchema`) and validated data in errors (false by default). -- _jsonPointers_: set `dataPath` property of errors using [JSON Pointers](https://tools.ietf.org/html/rfc6901) instead of JavaScript property access notation. -- _uniqueItems_: validate `uniqueItems` keyword (true by default). -- _unicode_: calculate correct length of strings with unicode pairs (true by default). Pass `false` to use `.length` of strings that is faster, but gives "incorrect" lengths of strings with unicode pairs - each unicode pair is counted as two characters. -- _format_: formats validation mode ('fast' by default). Pass 'full' for more correct and slow validation or `false` not to validate formats at all. E.g., 25:00:00 and 2015/14/33 will be invalid time and date in 'full' mode but it will be valid in 'fast' mode. -- _formats_: an object with custom formats. Keys and values will be passed to `addFormat` method. -- _unknownFormats_: handling of unknown formats. Option values: - - `true` (default) - if an unknown format is encountered the exception is thrown during schema compilation. If `format` keyword value is [$data reference](#data-reference) and it is unknown the validation will fail. - - `[String]` - an array of unknown format names that will be ignored. This option can be used to allow usage of third party schemas with format(s) for which you don't have definitions, but still fail if another unknown format is used. If `format` keyword value is [$data reference](#data-reference) and it is not in this array the validation will fail. - - `"ignore"` - to log warning during schema compilation and always pass validation (the default behaviour in versions before 5.0.0). This option is not recommended, as it allows to mistype format name and it won't be validated without any error message. This behaviour is required by JSON-schema specification. -- _schemas_: an array or object of schemas that will be added to the instance. In case you pass the array the schemas must have IDs in them. When the object is passed the method `addSchema(value, key)` will be called for each schema in this object. - - -##### Referenced schema options - -- _schemaId_: this option defines which keywords are used as schema URI. Option value: - - `"$id"` (recommended) - only use `$id` keyword as schema URI (as specified in JSON Schema draft-06), ignore `id` keyword (if it is present a warning will be logged). - - `"id"` - only use `id` keyword as schema URI (as specified in JSON Schema draft-04), ignore `$id` keyword (if it is present a warning will be logged). - - `undefined` (default) - use both `$id` and `id` keywords as schema URI. If both are present (in the same schema object) and different the exception will be thrown during schema compilation. -- _missingRefs_: handling of missing referenced schemas. Option values: - - `true` (default) - if the reference cannot be resolved during compilation the exception is thrown. The thrown error has properties `missingRef` (with hash fragment) and `missingSchema` (without it). Both properties are resolved relative to the current base id (usually schema id, unless it was substituted). - - `"ignore"` - to log error during compilation and always pass validation. - - `"fail"` - to log error and successfully compile schema but fail validation if this rule is checked. -- _extendRefs_: validation of other keywords when `$ref` is present in the schema. Option values: - - `"ignore"` (default) - when `$ref` is used other keywords are ignored (as per [JSON Reference](https://tools.ietf.org/html/draft-pbryan-zyp-json-ref-03#section-3) standard). A warning will be logged during the schema compilation. - - `"fail"` (recommended) - if other validation keywords are used together with `$ref` the exception will be thrown when the schema is compiled. This option is recommended to make sure schema has no keywords that are ignored, which can be confusing. - - `true` - validate all keywords in the schemas with `$ref` (the default behaviour in versions before 5.0.0). -- _loadSchema_: asynchronous function that will be used to load remote schemas when `compileAsync` [method](#api-compileAsync) is used and some reference is missing (option `missingRefs` should NOT be 'fail' or 'ignore'). This function should accept remote schema uri as a parameter and return a Promise that resolves to a schema. See example in [Asynchronous compilation](#asynchronous-schema-compilation). - - -##### Options to modify validated data - -- _removeAdditional_: remove additional properties - see example in [Filtering data](#filtering-data). This option is not used if schema is added with `addMetaSchema` method. Option values: - - `false` (default) - not to remove additional properties - - `"all"` - all additional properties are removed, regardless of `additionalProperties` keyword in schema (and no validation is made for them). - - `true` - only additional properties with `additionalProperties` keyword equal to `false` are removed. - - `"failing"` - additional properties that fail schema validation will be removed (where `additionalProperties` keyword is `false` or schema). -- _useDefaults_: replace missing properties and items with the values from corresponding `default` keywords. Default behaviour is to ignore `default` keywords. This option is not used if schema is added with `addMetaSchema` method. See examples in [Assigning defaults](#assigning-defaults). Option values: - - `false` (default) - do not use defaults - - `true` - insert defaults by value (safer and slower, object literal is used). - - `"shared"` - insert defaults by reference (faster). If the default is an object, it will be shared by all instances of validated data. If you modify the inserted default in the validated data, it will be modified in the schema as well. -- _coerceTypes_: change data type of data to match `type` keyword. See the example in [Coercing data types](#coercing-data-types) and [coercion rules](https://github.com/epoberezkin/ajv/blob/master/COERCION.md). Option values: - - `false` (default) - no type coercion. - - `true` - coerce scalar data types. - - `"array"` - in addition to coercions between scalar types, coerce scalar data to an array with one element and vice versa (as required by the schema). - - -##### Asynchronous validation options - -- _async_: determines how Ajv compiles asynchronous schemas (see [Asynchronous validation](#asynchronous-validation)) to functions. Option values: - - `"*"` / `"co*"` (default) - compile to generator function ("co*" - wrapped with `co.wrap`). If generators are not supported and you don't provide `processCode` option (or `transpile` option if you use [ajv-async](https://github.com/epoberezkin/ajv-async) package), the exception will be thrown when async schema is compiled. - - `"es7"` - compile to es7 async function. Unless your platform supports them you need to provide `processCode` or `transpile` option. According to [compatibility table](http://kangax.github.io/compat-table/es7/)) async functions are supported by: - - Firefox 52, - - Chrome 55, - - Node.js 7 (with `--harmony-async-await`), - - MS Edge 13 (with flag). - - `undefined`/`true` - auto-detect async mode. It requires [ajv-async](https://github.com/epoberezkin/ajv-async) package. If `transpile` option is not passed, ajv-async will choose the first of supported/installed async/transpile modes in this order: - - "es7" (native async functions), - - "co*" (native generators with co.wrap), - - "es7"/"nodent", - - "co*"/"regenerator" during the creation of the Ajv instance. - - If none of the options is available the exception will be thrown. -- _transpile_: Requires [ajv-async](https://github.com/epoberezkin/ajv-async) package. It determines whether Ajv transpiles compiled asynchronous validation function. Option values: - - `"nodent"` - transpile with [nodent](https://github.com/MatAtBread/nodent). If nodent is not installed, the exception will be thrown. nodent can only transpile es7 async functions; it will enforce this mode. - - `"regenerator"` - transpile with [regenerator](https://github.com/facebook/regenerator). If regenerator is not installed, the exception will be thrown. - - a function - this function should accept the code of validation function as a string and return transpiled code. This option allows you to use any other transpiler you prefer. If you are passing a function, you can simply pass it to `processCode` option without using ajv-async. - - -##### Advanced options - -- _meta_: add [meta-schema](http://json-schema.org/documentation.html) so it can be used by other schemas (true by default). If an object is passed, it will be used as the default meta-schema for schemas that have no `$schema` keyword. This default meta-schema MUST have `$schema` keyword. -- _validateSchema_: validate added/compiled schemas against meta-schema (true by default). `$schema` property in the schema can either be http://json-schema.org/schema or http://json-schema.org/draft-04/schema or absent (draft-4 meta-schema will be used) or can be a reference to the schema previously added with `addMetaSchema` method. Option values: - - `true` (default) - if the validation fails, throw the exception. - - `"log"` - if the validation fails, log error. - - `false` - skip schema validation. -- _addUsedSchema_: by default methods `compile` and `validate` add schemas to the instance if they have `$id` (or `id`) property that doesn't start with "#". If `$id` is present and it is not unique the exception will be thrown. Set this option to `false` to skip adding schemas to the instance and the `$id` uniqueness check when these methods are used. This option does not affect `addSchema` method. -- _inlineRefs_: Affects compilation of referenced schemas. Option values: - - `true` (default) - the referenced schemas that don't have refs in them are inlined, regardless of their size - that substantially improves performance at the cost of the bigger size of compiled schema functions. - - `false` - to not inline referenced schemas (they will be compiled as separate functions). - - integer number - to limit the maximum number of keywords of the schema that will be inlined. -- _passContext_: pass validation context to custom keyword functions. If this option is `true` and you pass some context to the compiled validation function with `validate.call(context, data)`, the `context` will be available as `this` in your custom keywords. By default `this` is Ajv instance. -- _loopRequired_: by default `required` keyword is compiled into a single expression (or a sequence of statements in `allErrors` mode). In case of a very large number of properties in this keyword it may result in a very big validation function. Pass integer to set the number of properties above which `required` keyword will be validated in a loop - smaller validation function size but also worse performance. -- _ownProperties_: by default Ajv iterates over all enumerable object properties; when this option is `true` only own enumerable object properties (i.e. found directly on the object rather than on its prototype) are iterated. Contributed by @mbroadst. -- _multipleOfPrecision_: by default `multipleOf` keyword is validated by comparing the result of division with parseInt() of that result. It works for dividers that are bigger than 1. For small dividers such as 0.01 the result of the division is usually not integer (even when it should be integer, see issue [#84](https://github.com/epoberezkin/ajv/issues/84)). If you need to use fractional dividers set this option to some positive integer N to have `multipleOf` validated using this formula: `Math.abs(Math.round(division) - division) < 1e-N` (it is slower but allows for float arithmetics deviations). -- _errorDataPath_: set `dataPath` to point to 'object' (default) or to 'property' when validating keywords `required`, `additionalProperties` and `dependencies`. -- _messages_: Include human-readable messages in errors. `true` by default. `false` can be passed when custom messages are used (e.g. with [ajv-i18n](https://github.com/epoberezkin/ajv-i18n)). -- _sourceCode_: add `sourceCode` property to validating function (for debugging; this code can be different from the result of toString call). -- _processCode_: an optional function to process generated code before it is passed to Function constructor. It can be used to either beautify (the validating function is generated without line-breaks) or to transpile code. Starting from version 5.0.0 this option replaced options: - - `beautify` that formatted the generated function using [js-beautify](https://github.com/beautify-web/js-beautify). If you want to beautify the generated code pass `require('js-beautify').js_beautify`. - - `transpile` that transpiled asynchronous validation function. You can still use `transpile` option with [ajv-async](https://github.com/epoberezkin/ajv-async) package. See [Asynchronous validation](#asynchronous-validation) for more information. -- _cache_: an optional instance of cache to store compiled schemas using stable-stringified schema as a key. For example, set-associative cache [sacjs](https://github.com/epoberezkin/sacjs) can be used. If not passed then a simple hash is used which is good enough for the common use case (a limited number of statically defined schemas). Cache should have methods `put(key, value)`, `get(key)`, `del(key)` and `clear()`. -- _serialize_: an optional function to serialize schema to cache key. Pass `false` to use schema itself as a key (e.g., if WeakMap used as a cache). By default [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) is used. - - -## Validation errors - -In case of validation failure, Ajv assigns the array of errors to `errors` property of validation function (or to `errors` property of Ajv instance when `validate` or `validateSchema` methods were called). In case of [asynchronous validation](#asynchronous-validation), the returned promise is rejected with exception `Ajv.ValidationError` that has `errors` property. - - -### Error objects - -Each error is an object with the following properties: - -- _keyword_: validation keyword. -- _dataPath_: the path to the part of the data that was validated. By default `dataPath` uses JavaScript property access notation (e.g., `".prop[1].subProp"`). When the option `jsonPointers` is true (see [Options](#options)) `dataPath` will be set using JSON pointer standard (e.g., `"/prop/1/subProp"`). -- _schemaPath_: the path (JSON-pointer as a URI fragment) to the schema of the keyword that failed validation. -- _params_: the object with the additional information about error that can be used to create custom error messages (e.g., using [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) package). See below for parameters set by all keywords. -- _message_: the standard error message (can be excluded with option `messages` set to false). -- _schema_: the schema of the keyword (added with `verbose` option). -- _parentSchema_: the schema containing the keyword (added with `verbose` option) -- _data_: the data validated by the keyword (added with `verbose` option). - -__Please note__: `propertyNames` keyword schema validation errors have an additional property `propertyName`, `dataPath` points to the object. After schema validation for each property name, if it is invalid an additional error is added with the property `keyword` equal to `"propertyNames"`. - - -### Error parameters - -Properties of `params` object in errors depend on the keyword that failed validation. - -- `maxItems`, `minItems`, `maxLength`, `minLength`, `maxProperties`, `minProperties` - property `limit` (number, the schema of the keyword). -- `additionalItems` - property `limit` (the maximum number of allowed items in case when `items` keyword is an array of schemas and `additionalItems` is false). -- `additionalProperties` - property `additionalProperty` (the property not used in `properties` and `patternProperties` keywords). -- `dependencies` - properties: - - `property` (dependent property), - - `missingProperty` (required missing dependency - only the first one is reported currently) - - `deps` (required dependencies, comma separated list as a string), - - `depsCount` (the number of required dependencies). -- `format` - property `format` (the schema of the keyword). -- `maximum`, `minimum` - properties: - - `limit` (number, the schema of the keyword), - - `exclusive` (boolean, the schema of `exclusiveMaximum` or `exclusiveMinimum`), - - `comparison` (string, comparison operation to compare the data to the limit, with the data on the left and the limit on the right; can be "<", "<=", ">", ">=") -- `multipleOf` - property `multipleOf` (the schema of the keyword) -- `pattern` - property `pattern` (the schema of the keyword) -- `required` - property `missingProperty` (required property that is missing). -- `propertyNames` - property `propertyName` (an invalid property name). -- `patternRequired` (in ajv-keywords) - property `missingPattern` (required pattern that did not match any property). -- `type` - property `type` (required type(s), a string, can be a comma-separated list) -- `uniqueItems` - properties `i` and `j` (indices of duplicate items). -- `enum` - property `allowedValues` pointing to the array of values (the schema of the keyword). -- `$ref` - property `ref` with the referenced schema URI. -- custom keywords (in case keyword definition doesn't create errors) - property `keyword` (the keyword name). - - -## Related packages - -- [ajv-cli](https://github.com/epoberezkin/ajv-cli) - command line interface for Ajv -- [ajv-i18n](https://github.com/epoberezkin/ajv-i18n) - internationalised error messages -- [ajv-merge-patch](https://github.com/epoberezkin/ajv-merge-patch) - keywords $merge and $patch. -- [ajv-keywords](https://github.com/epoberezkin/ajv-keywords) - several custom keywords that can be used with Ajv (typeof, instanceof, range, propertyNames) -- [ajv-errors](https://github.com/epoberezkin/ajv-errors) - custom error messages for Ajv - - -## Some packages using Ajv - -- [webpack](https://github.com/webpack/webpack) - a module bundler. Its main purpose is to bundle JavaScript files for usage in a browser -- [jsonscript-js](https://github.com/JSONScript/jsonscript-js) - the interpreter for [JSONScript](http://www.jsonscript.org) - scripted processing of existing endpoints and services -- [osprey-method-handler](https://github.com/mulesoft-labs/osprey-method-handler) - Express middleware for validating requests and responses based on a RAML method object, used in [osprey](https://github.com/mulesoft/osprey) - validating API proxy generated from a RAML definition -- [har-validator](https://github.com/ahmadnassri/har-validator) - HTTP Archive (HAR) validator -- [jsoneditor](https://github.com/josdejong/jsoneditor) - a web-based tool to view, edit, format, and validate JSON http://jsoneditoronline.org -- [JSON Schema Lint](https://github.com/nickcmaynard/jsonschemalint) - a web tool to validate JSON/YAML document against a single JSON-schema http://jsonschemalint.com -- [objection](https://github.com/vincit/objection.js) - SQL-friendly ORM for Node.js -- [table](https://github.com/gajus/table) - formats data into a string table -- [ripple-lib](https://github.com/ripple/ripple-lib) - a JavaScript API for interacting with [Ripple](https://ripple.com) in Node.js and the browser -- [restbase](https://github.com/wikimedia/restbase) - distributed storage with REST API & dispatcher for backend services built to provide a low-latency & high-throughput API for Wikipedia / Wikimedia content -- [hippie-swagger](https://github.com/CacheControl/hippie-swagger) - [Hippie](https://github.com/vesln/hippie) wrapper that provides end to end API testing with swagger validation -- [react-form-controlled](https://github.com/seeden/react-form-controlled) - React controlled form components with validation -- [rabbitmq-schema](https://github.com/tjmehta/rabbitmq-schema) - a schema definition module for RabbitMQ graphs and messages -- [@query/schema](https://www.npmjs.com/package/@query/schema) - stream filtering with a URI-safe query syntax parsing to JSON Schema -- [chai-ajv-json-schema](https://github.com/peon374/chai-ajv-json-schema) - chai plugin to us JSON-schema with expect in mocha tests -- [grunt-jsonschema-ajv](https://github.com/SignpostMarv/grunt-jsonschema-ajv) - Grunt plugin for validating files against JSON Schema -- [extract-text-webpack-plugin](https://github.com/webpack-contrib/extract-text-webpack-plugin) - extract text from bundle into a file -- [electron-builder](https://github.com/electron-userland/electron-builder) - a solution to package and build a ready for distribution Electron app -- [addons-linter](https://github.com/mozilla/addons-linter) - Mozilla Add-ons Linter -- [gh-pages-generator](https://github.com/epoberezkin/gh-pages-generator) - multi-page site generator converting markdown files to GitHub pages - - -## Tests - -``` -npm install -git submodule update --init -npm test -``` - -## Contributing - -All validation functions are generated using doT templates in [dot](https://github.com/epoberezkin/ajv/tree/master/lib/dot) folder. Templates are precompiled so doT is not a run-time dependency. - -`npm run build` - compiles templates to [dotjs](https://github.com/epoberezkin/ajv/tree/master/lib/dotjs) folder. - -`npm run watch` - automatically compiles templates when files in dot folder change - -Please see [Contributing guidelines](https://github.com/epoberezkin/ajv/blob/master/CONTRIBUTING.md) - - -## Changes history - -See https://github.com/epoberezkin/ajv/releases - -__Please note__: [Changes in version 5.0.0](https://github.com/epoberezkin/ajv/releases/tag/5.0.0). - -[Changes in version 4.6.0](https://github.com/epoberezkin/ajv/releases/tag/4.6.0). - -[Changes in version 4.0.0](https://github.com/epoberezkin/ajv/releases/tag/4.0.0). - -[Changes in version 3.0.0](https://github.com/epoberezkin/ajv/releases/tag/3.0.0). - -[Changes in version 2.0.0](https://github.com/epoberezkin/ajv/releases/tag/2.0.0). - - -## License - -[MIT](https://github.com/epoberezkin/ajv/blob/master/LICENSE) diff --git a/src/js-validator/node_modules/ajv/dist/ajv.bundle.js b/src/js-validator/node_modules/ajv/dist/ajv.bundle.js deleted file mode 100644 index 592c7062c..000000000 --- a/src/js-validator/node_modules/ajv/dist/ajv.bundle.js +++ /dev/null @@ -1,7310 +0,0 @@ -(function(f){if(typeof exports==="object"&&typeof module!=="undefined"){module.exports=f()}else if(typeof define==="function"&&define.amd){define([],f)}else{var g;if(typeof window!=="undefined"){g=window}else if(typeof global!=="undefined"){g=global}else if(typeof self!=="undefined"){g=self}else{g=this}g.Ajv = f()}})(function(){var define,module,exports;return (function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o%\\^`{|}]|%[0-9a-f]{2})|\{[+#./;?&=,!@|]?(?:[a-z0-9_]|%[0-9a-f]{2})+(?::[1-9][0-9]{0,3}|\*)?(?:,(?:[a-z0-9_]|%[0-9a-f]{2})+(?::[1-9][0-9]{0,3}|\*)?)*\})*$/i; -// For the source: https://gist.github.com/dperini/729294 -// For test cases: https://mathiasbynens.be/demo/url-regex -// @todo Delete current URL in favour of the commented out URL rule when this issue is fixed https://github.com/eslint/eslint/issues/7983. -// var URL = /^(?:(?:https?|ftp):\/\/)(?:\S+(?::\S*)?@)?(?:(?!10(?:\.\d{1,3}){3})(?!127(?:\.\d{1,3}){3})(?!169\.254(?:\.\d{1,3}){2})(?!192\.168(?:\.\d{1,3}){2})(?!172\.(?:1[6-9]|2\d|3[0-1])(?:\.\d{1,3}){2})(?:[1-9]\d?|1\d\d|2[01]\d|22[0-3])(?:\.(?:1?\d{1,2}|2[0-4]\d|25[0-5])){2}(?:\.(?:[1-9]\d?|1\d\d|2[0-4]\d|25[0-4]))|(?:(?:[a-z\u{00a1}-\u{ffff}0-9]+-?)*[a-z\u{00a1}-\u{ffff}0-9]+)(?:\.(?:[a-z\u{00a1}-\u{ffff}0-9]+-?)*[a-z\u{00a1}-\u{ffff}0-9]+)*(?:\.(?:[a-z\u{00a1}-\u{ffff}]{2,})))(?::\d{2,5})?(?:\/[^\s]*)?$/iu; -var URL = /^(?:(?:http[s\u017F]?|ftp):\/\/)(?:(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+(?::(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])*)?@)?(?:(?!10(?:\.[0-9]{1,3}){3})(?!127(?:\.[0-9]{1,3}){3})(?!169\.254(?:\.[0-9]{1,3}){2})(?!192\.168(?:\.[0-9]{1,3}){2})(?!172\.(?:1[6-9]|2[0-9]|3[01])(?:\.[0-9]{1,3}){2})(?:[1-9][0-9]?|1[0-9][0-9]|2[01][0-9]|22[0-3])(?:\.(?:1?[0-9]{1,2}|2[0-4][0-9]|25[0-5])){2}(?:\.(?:[1-9][0-9]?|1[0-9][0-9]|2[0-4][0-9]|25[0-4]))|(?:(?:(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+-?)*(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+)(?:\.(?:(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+-?)*(?:[0-9KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])+)*(?:\.(?:(?:[KSa-z\xA1-\uD7FF\uE000-\uFFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF]){2,})))(?::[0-9]{2,5})?(?:\/(?:[\0-\x08\x0E-\x1F!-\x9F\xA1-\u167F\u1681-\u1FFF\u200B-\u2027\u202A-\u202E\u2030-\u205E\u2060-\u2FFF\u3001-\uD7FF\uE000-\uFEFE\uFF00-\uFFFF]|[\uD800-\uDBFF][\uDC00-\uDFFF]|[\uD800-\uDBFF](?![\uDC00-\uDFFF])|(?:[^\uD800-\uDBFF]|^)[\uDC00-\uDFFF])*)?$/i; -var UUID = /^(?:urn:uuid:)?[0-9a-f]{8}-(?:[0-9a-f]{4}-){3}[0-9a-f]{12}$/i; -var JSON_POINTER = /^(?:\/(?:[^~/]|~0|~1)*)*$|^#(?:\/(?:[a-z0-9_\-.!$&'()*+,;:=@]|%[0-9a-f]{2}|~0|~1)*)*$/i; -var RELATIVE_JSON_POINTER = /^(?:0|[1-9][0-9]*)(?:#|(?:\/(?:[^~/]|~0|~1)*)*)$/; - - -module.exports = formats; - -function formats(mode) { - mode = mode == 'full' ? 'full' : 'fast'; - return util.copy(formats[mode]); -} - - -formats.fast = { - // date: http://tools.ietf.org/html/rfc3339#section-5.6 - date: /^\d\d\d\d-[0-1]\d-[0-3]\d$/, - // date-time: http://tools.ietf.org/html/rfc3339#section-5.6 - time: /^[0-2]\d:[0-5]\d:[0-5]\d(?:\.\d+)?(?:z|[+-]\d\d:\d\d)?$/i, - 'date-time': /^\d\d\d\d-[0-1]\d-[0-3]\d[t\s][0-2]\d:[0-5]\d:[0-5]\d(?:\.\d+)?(?:z|[+-]\d\d:\d\d)$/i, - // uri: https://github.com/mafintosh/is-my-json-valid/blob/master/formats.js - uri: /^(?:[a-z][a-z0-9+-.]*)(?::|\/)\/?[^\s]*$/i, - 'uri-reference': /^(?:(?:[a-z][a-z0-9+-.]*:)?\/\/)?[^\s]*$/i, - 'uri-template': URITEMPLATE, - url: URL, - // email (sources from jsen validator): - // http://stackoverflow.com/questions/201323/using-a-regular-expression-to-validate-an-email-address#answer-8829363 - // http://www.w3.org/TR/html5/forms.html#valid-e-mail-address (search for 'willful violation') - email: /^[a-z0-9.!#$%&'*+/=?^_`{|}~-]+@[a-z0-9](?:[a-z0-9-]{0,61}[a-z0-9])?(?:\.[a-z0-9](?:[a-z0-9-]{0,61}[a-z0-9])?)*$/i, - hostname: HOSTNAME, - // optimized https://www.safaribooksonline.com/library/view/regular-expressions-cookbook/9780596802837/ch07s16.html - ipv4: /^(?:(?:25[0-5]|2[0-4]\d|[01]?\d\d?)\.){3}(?:25[0-5]|2[0-4]\d|[01]?\d\d?)$/, - // optimized http://stackoverflow.com/questions/53497/regular-expression-that-matches-valid-ipv6-addresses - ipv6: /^\s*(?:(?:(?:[0-9a-f]{1,4}:){7}(?:[0-9a-f]{1,4}|:))|(?:(?:[0-9a-f]{1,4}:){6}(?::[0-9a-f]{1,4}|(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){5}(?:(?:(?::[0-9a-f]{1,4}){1,2})|:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){4}(?:(?:(?::[0-9a-f]{1,4}){1,3})|(?:(?::[0-9a-f]{1,4})?:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){3}(?:(?:(?::[0-9a-f]{1,4}){1,4})|(?:(?::[0-9a-f]{1,4}){0,2}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){2}(?:(?:(?::[0-9a-f]{1,4}){1,5})|(?:(?::[0-9a-f]{1,4}){0,3}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){1}(?:(?:(?::[0-9a-f]{1,4}){1,6})|(?:(?::[0-9a-f]{1,4}){0,4}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?::(?:(?:(?::[0-9a-f]{1,4}){1,7})|(?:(?::[0-9a-f]{1,4}){0,5}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:)))(?:%.+)?\s*$/i, - regex: regex, - // uuid: http://tools.ietf.org/html/rfc4122 - uuid: UUID, - // JSON-pointer: https://tools.ietf.org/html/rfc6901 - // uri fragment: https://tools.ietf.org/html/rfc3986#appendix-A - 'json-pointer': JSON_POINTER, - // relative JSON-pointer: http://tools.ietf.org/html/draft-luff-relative-json-pointer-00 - 'relative-json-pointer': RELATIVE_JSON_POINTER -}; - - -formats.full = { - date: date, - time: time, - 'date-time': date_time, - uri: uri, - 'uri-reference': URIREF, - 'uri-template': URITEMPLATE, - url: URL, - email: /^[a-z0-9!#$%&'*+/=?^_`{|}~-]+(?:\.[a-z0-9!#$%&''*+/=?^_`{|}~-]+)*@(?:[a-z0-9](?:[a-z0-9-]*[a-z0-9])?\.)+[a-z0-9](?:[a-z0-9-]*[a-z0-9])?$/i, - hostname: hostname, - ipv4: /^(?:(?:25[0-5]|2[0-4]\d|[01]?\d\d?)\.){3}(?:25[0-5]|2[0-4]\d|[01]?\d\d?)$/, - ipv6: /^\s*(?:(?:(?:[0-9a-f]{1,4}:){7}(?:[0-9a-f]{1,4}|:))|(?:(?:[0-9a-f]{1,4}:){6}(?::[0-9a-f]{1,4}|(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){5}(?:(?:(?::[0-9a-f]{1,4}){1,2})|:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(?:(?:[0-9a-f]{1,4}:){4}(?:(?:(?::[0-9a-f]{1,4}){1,3})|(?:(?::[0-9a-f]{1,4})?:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){3}(?:(?:(?::[0-9a-f]{1,4}){1,4})|(?:(?::[0-9a-f]{1,4}){0,2}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){2}(?:(?:(?::[0-9a-f]{1,4}){1,5})|(?:(?::[0-9a-f]{1,4}){0,3}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?:(?:[0-9a-f]{1,4}:){1}(?:(?:(?::[0-9a-f]{1,4}){1,6})|(?:(?::[0-9a-f]{1,4}){0,4}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(?::(?:(?:(?::[0-9a-f]{1,4}){1,7})|(?:(?::[0-9a-f]{1,4}){0,5}:(?:(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(?:\.(?:25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:)))(?:%.+)?\s*$/i, - regex: regex, - uuid: UUID, - 'json-pointer': JSON_POINTER, - 'relative-json-pointer': RELATIVE_JSON_POINTER -}; - - -function date(str) { - // full-date from http://tools.ietf.org/html/rfc3339#section-5.6 - var matches = str.match(DATE); - if (!matches) return false; - - var month = +matches[1]; - var day = +matches[2]; - return month >= 1 && month <= 12 && day >= 1 && day <= DAYS[month]; -} - - -function time(str, full) { - var matches = str.match(TIME); - if (!matches) return false; - - var hour = matches[1]; - var minute = matches[2]; - var second = matches[3]; - var timeZone = matches[5]; - return hour <= 23 && minute <= 59 && second <= 59 && (!full || timeZone); -} - - -var DATE_TIME_SEPARATOR = /t|\s/i; -function date_time(str) { - // http://tools.ietf.org/html/rfc3339#section-5.6 - var dateTime = str.split(DATE_TIME_SEPARATOR); - return dateTime.length == 2 && date(dateTime[0]) && time(dateTime[1], true); -} - - -function hostname(str) { - // https://tools.ietf.org/html/rfc1034#section-3.5 - // https://tools.ietf.org/html/rfc1123#section-2 - return str.length <= 255 && HOSTNAME.test(str); -} - - -var NOT_URI_FRAGMENT = /\/|:/; -function uri(str) { - // http://jmrware.com/articles/2009/uri_regexp/URI_regex.html + optional protocol + required "." - return NOT_URI_FRAGMENT.test(str) && URI.test(str); -} - - -var Z_ANCHOR = /[^\\]\\Z/; -function regex(str) { - if (Z_ANCHOR.test(str)) return false; - try { - new RegExp(str); - return true; - } catch(e) { - return false; - } -} - -},{"./util":12}],7:[function(require,module,exports){ -'use strict'; - -var resolve = require('./resolve') - , util = require('./util') - , errorClasses = require('./error_classes') - , stableStringify = require('fast-json-stable-stringify'); - -var validateGenerator = require('../dotjs/validate'); - -/** - * Functions below are used inside compiled validations function - */ - -var co = require('co'); -var ucs2length = util.ucs2length; -var equal = require('fast-deep-equal'); - -// this error is thrown by async schemas to return validation errors via exception -var ValidationError = errorClasses.Validation; - -module.exports = compile; - - -/** - * Compiles schema to validation function - * @this Ajv - * @param {Object} schema schema object - * @param {Object} root object with information about the root schema for this schema - * @param {Object} localRefs the hash of local references inside the schema (created by resolve.id), used for inline resolution - * @param {String} baseId base ID for IDs in the schema - * @return {Function} validation function - */ -function compile(schema, root, localRefs, baseId) { - /* jshint validthis: true, evil: true */ - /* eslint no-shadow: 0 */ - var self = this - , opts = this._opts - , refVal = [ undefined ] - , refs = {} - , patterns = [] - , patternsHash = {} - , defaults = [] - , defaultsHash = {} - , customRules = []; - - root = root || { schema: schema, refVal: refVal, refs: refs }; - - var c = checkCompiling.call(this, schema, root, baseId); - var compilation = this._compilations[c.index]; - if (c.compiling) return (compilation.callValidate = callValidate); - - var formats = this._formats; - var RULES = this.RULES; - - try { - var v = localCompile(schema, root, localRefs, baseId); - compilation.validate = v; - var cv = compilation.callValidate; - if (cv) { - cv.schema = v.schema; - cv.errors = null; - cv.refs = v.refs; - cv.refVal = v.refVal; - cv.root = v.root; - cv.$async = v.$async; - if (opts.sourceCode) cv.source = v.source; - } - return v; - } finally { - endCompiling.call(this, schema, root, baseId); - } - - function callValidate() { - var validate = compilation.validate; - var result = validate.apply(null, arguments); - callValidate.errors = validate.errors; - return result; - } - - function localCompile(_schema, _root, localRefs, baseId) { - var isRoot = !_root || (_root && _root.schema == _schema); - if (_root.schema != root.schema) - return compile.call(self, _schema, _root, localRefs, baseId); - - var $async = _schema.$async === true; - - var sourceCode = validateGenerator({ - isTop: true, - schema: _schema, - isRoot: isRoot, - baseId: baseId, - root: _root, - schemaPath: '', - errSchemaPath: '#', - errorPath: '""', - MissingRefError: errorClasses.MissingRef, - RULES: RULES, - validate: validateGenerator, - util: util, - resolve: resolve, - resolveRef: resolveRef, - usePattern: usePattern, - useDefault: useDefault, - useCustomRule: useCustomRule, - opts: opts, - formats: formats, - self: self - }); - - sourceCode = vars(refVal, refValCode) + vars(patterns, patternCode) - + vars(defaults, defaultCode) + vars(customRules, customRuleCode) - + sourceCode; - - if (opts.processCode) sourceCode = opts.processCode(sourceCode); - // console.log('\n\n\n *** \n', JSON.stringify(sourceCode)); - var validate; - try { - var makeValidate = new Function( - 'self', - 'RULES', - 'formats', - 'root', - 'refVal', - 'defaults', - 'customRules', - 'co', - 'equal', - 'ucs2length', - 'ValidationError', - sourceCode - ); - - validate = makeValidate( - self, - RULES, - formats, - root, - refVal, - defaults, - customRules, - co, - equal, - ucs2length, - ValidationError - ); - - refVal[0] = validate; - } catch(e) { - console.error('Error compiling schema, function code:', sourceCode); - throw e; - } - - validate.schema = _schema; - validate.errors = null; - validate.refs = refs; - validate.refVal = refVal; - validate.root = isRoot ? validate : _root; - if ($async) validate.$async = true; - if (opts.sourceCode === true) { - validate.source = { - code: sourceCode, - patterns: patterns, - defaults: defaults - }; - } - - return validate; - } - - function resolveRef(baseId, ref, isRoot) { - ref = resolve.url(baseId, ref); - var refIndex = refs[ref]; - var _refVal, refCode; - if (refIndex !== undefined) { - _refVal = refVal[refIndex]; - refCode = 'refVal[' + refIndex + ']'; - return resolvedRef(_refVal, refCode); - } - if (!isRoot && root.refs) { - var rootRefId = root.refs[ref]; - if (rootRefId !== undefined) { - _refVal = root.refVal[rootRefId]; - refCode = addLocalRef(ref, _refVal); - return resolvedRef(_refVal, refCode); - } - } - - refCode = addLocalRef(ref); - var v = resolve.call(self, localCompile, root, ref); - if (v === undefined) { - var localSchema = localRefs && localRefs[ref]; - if (localSchema) { - v = resolve.inlineRef(localSchema, opts.inlineRefs) - ? localSchema - : compile.call(self, localSchema, root, localRefs, baseId); - } - } - - if (v === undefined) { - removeLocalRef(ref); - } else { - replaceLocalRef(ref, v); - return resolvedRef(v, refCode); - } - } - - function addLocalRef(ref, v) { - var refId = refVal.length; - refVal[refId] = v; - refs[ref] = refId; - return 'refVal' + refId; - } - - function removeLocalRef(ref) { - delete refs[ref]; - } - - function replaceLocalRef(ref, v) { - var refId = refs[ref]; - refVal[refId] = v; - } - - function resolvedRef(refVal, code) { - return typeof refVal == 'object' || typeof refVal == 'boolean' - ? { code: code, schema: refVal, inline: true } - : { code: code, $async: refVal && refVal.$async }; - } - - function usePattern(regexStr) { - var index = patternsHash[regexStr]; - if (index === undefined) { - index = patternsHash[regexStr] = patterns.length; - patterns[index] = regexStr; - } - return 'pattern' + index; - } - - function useDefault(value) { - switch (typeof value) { - case 'boolean': - case 'number': - return '' + value; - case 'string': - return util.toQuotedString(value); - case 'object': - if (value === null) return 'null'; - var valueStr = stableStringify(value); - var index = defaultsHash[valueStr]; - if (index === undefined) { - index = defaultsHash[valueStr] = defaults.length; - defaults[index] = value; - } - return 'default' + index; - } - } - - function useCustomRule(rule, schema, parentSchema, it) { - var validateSchema = rule.definition.validateSchema; - if (validateSchema && self._opts.validateSchema !== false) { - var valid = validateSchema(schema); - if (!valid) { - var message = 'keyword schema is invalid: ' + self.errorsText(validateSchema.errors); - if (self._opts.validateSchema == 'log') console.error(message); - else throw new Error(message); - } - } - - var compile = rule.definition.compile - , inline = rule.definition.inline - , macro = rule.definition.macro; - - var validate; - if (compile) { - validate = compile.call(self, schema, parentSchema, it); - } else if (macro) { - validate = macro.call(self, schema, parentSchema, it); - if (opts.validateSchema !== false) self.validateSchema(validate, true); - } else if (inline) { - validate = inline.call(self, it, rule.keyword, schema, parentSchema); - } else { - validate = rule.definition.validate; - if (!validate) return; - } - - if (validate === undefined) - throw new Error('custom keyword "' + rule.keyword + '"failed to compile'); - - var index = customRules.length; - customRules[index] = validate; - - return { - code: 'customRule' + index, - validate: validate - }; - } -} - - -/** - * Checks if the schema is currently compiled - * @this Ajv - * @param {Object} schema schema to compile - * @param {Object} root root object - * @param {String} baseId base schema ID - * @return {Object} object with properties "index" (compilation index) and "compiling" (boolean) - */ -function checkCompiling(schema, root, baseId) { - /* jshint validthis: true */ - var index = compIndex.call(this, schema, root, baseId); - if (index >= 0) return { index: index, compiling: true }; - index = this._compilations.length; - this._compilations[index] = { - schema: schema, - root: root, - baseId: baseId - }; - return { index: index, compiling: false }; -} - - -/** - * Removes the schema from the currently compiled list - * @this Ajv - * @param {Object} schema schema to compile - * @param {Object} root root object - * @param {String} baseId base schema ID - */ -function endCompiling(schema, root, baseId) { - /* jshint validthis: true */ - var i = compIndex.call(this, schema, root, baseId); - if (i >= 0) this._compilations.splice(i, 1); -} - - -/** - * Index of schema compilation in the currently compiled list - * @this Ajv - * @param {Object} schema schema to compile - * @param {Object} root root object - * @param {String} baseId base schema ID - * @return {Integer} compilation index - */ -function compIndex(schema, root, baseId) { - /* jshint validthis: true */ - for (var i=0; i= 0xD800 && value <= 0xDBFF && pos < len) { - // high surrogate, and there is a next character - value = str.charCodeAt(pos); - if ((value & 0xFC00) == 0xDC00) pos++; // low surrogate - } - } - return length; -}; - -},{}],12:[function(require,module,exports){ -'use strict'; - - -module.exports = { - copy: copy, - checkDataType: checkDataType, - checkDataTypes: checkDataTypes, - coerceToTypes: coerceToTypes, - toHash: toHash, - getProperty: getProperty, - escapeQuotes: escapeQuotes, - equal: require('fast-deep-equal'), - ucs2length: require('./ucs2length'), - varOccurences: varOccurences, - varReplace: varReplace, - cleanUpCode: cleanUpCode, - finalCleanUpCode: finalCleanUpCode, - schemaHasRules: schemaHasRules, - schemaHasRulesExcept: schemaHasRulesExcept, - toQuotedString: toQuotedString, - getPathExpr: getPathExpr, - getPath: getPath, - getData: getData, - unescapeFragment: unescapeFragment, - unescapeJsonPointer: unescapeJsonPointer, - escapeFragment: escapeFragment, - escapeJsonPointer: escapeJsonPointer -}; - - -function copy(o, to) { - to = to || {}; - for (var key in o) to[key] = o[key]; - return to; -} - - -function checkDataType(dataType, data, negate) { - var EQUAL = negate ? ' !== ' : ' === ' - , AND = negate ? ' || ' : ' && ' - , OK = negate ? '!' : '' - , NOT = negate ? '' : '!'; - switch (dataType) { - case 'null': return data + EQUAL + 'null'; - case 'array': return OK + 'Array.isArray(' + data + ')'; - case 'object': return '(' + OK + data + AND + - 'typeof ' + data + EQUAL + '"object"' + AND + - NOT + 'Array.isArray(' + data + '))'; - case 'integer': return '(typeof ' + data + EQUAL + '"number"' + AND + - NOT + '(' + data + ' % 1)' + - AND + data + EQUAL + data + ')'; - default: return 'typeof ' + data + EQUAL + '"' + dataType + '"'; - } -} - - -function checkDataTypes(dataTypes, data) { - switch (dataTypes.length) { - case 1: return checkDataType(dataTypes[0], data, true); - default: - var code = ''; - var types = toHash(dataTypes); - if (types.array && types.object) { - code = types.null ? '(': '(!' + data + ' || '; - code += 'typeof ' + data + ' !== "object")'; - delete types.null; - delete types.array; - delete types.object; - } - if (types.number) delete types.integer; - for (var t in types) - code += (code ? ' && ' : '' ) + checkDataType(t, data, true); - - return code; - } -} - - -var COERCE_TO_TYPES = toHash([ 'string', 'number', 'integer', 'boolean', 'null' ]); -function coerceToTypes(optionCoerceTypes, dataTypes) { - if (Array.isArray(dataTypes)) { - var types = []; - for (var i=0; i= lvl) throw new Error('Cannot access property/index ' + up + ' levels up, current level is ' + lvl); - return paths[lvl - up]; - } - - if (up > lvl) throw new Error('Cannot access data ' + up + ' levels up, current level is ' + lvl); - data = 'data' + ((lvl - up) || ''); - if (!jsonPointer) return data; - } - - var expr = data; - var segments = jsonPointer.split('/'); - for (var i=0; i', - $notOp = $isMax ? '>' : '<', - $errorKeyword = undefined; - if ($isDataExcl) { - var $schemaValueExcl = it.util.getData($schemaExcl.$data, $dataLvl, it.dataPathArr), - $exclusive = 'exclusive' + $lvl, - $exclType = 'exclType' + $lvl, - $exclIsNumber = 'exclIsNumber' + $lvl, - $opExpr = 'op' + $lvl, - $opStr = '\' + ' + $opExpr + ' + \''; - out += ' var schemaExcl' + ($lvl) + ' = ' + ($schemaValueExcl) + '; '; - $schemaValueExcl = 'schemaExcl' + $lvl; - out += ' var ' + ($exclusive) + '; var ' + ($exclType) + ' = typeof ' + ($schemaValueExcl) + '; if (' + ($exclType) + ' != \'boolean\' && ' + ($exclType) + ' != \'undefined\' && ' + ($exclType) + ' != \'number\') { '; - var $errorKeyword = $exclusiveKeyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || '_exclusiveLimit') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'' + ($exclusiveKeyword) + ' should be boolean\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - out += ' ' + ($exclType) + ' == \'number\' ? ( (' + ($exclusive) + ' = ' + ($schemaValue) + ' === undefined || ' + ($schemaValueExcl) + ' ' + ($op) + '= ' + ($schemaValue) + ') ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaValueExcl) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) : ( (' + ($exclusive) + ' = ' + ($schemaValueExcl) + ' === true) ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaValue) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) || ' + ($data) + ' !== ' + ($data) + ') { var op' + ($lvl) + ' = ' + ($exclusive) + ' ? \'' + ($op) + '\' : \'' + ($op) + '=\';'; - } else { - var $exclIsNumber = typeof $schemaExcl == 'number', - $opStr = $op; - if ($exclIsNumber && $isData) { - var $opExpr = '\'' + $opStr + '\''; - out += ' if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - out += ' ( ' + ($schemaValue) + ' === undefined || ' + ($schemaExcl) + ' ' + ($op) + '= ' + ($schemaValue) + ' ? ' + ($data) + ' ' + ($notOp) + '= ' + ($schemaExcl) + ' : ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' ) || ' + ($data) + ' !== ' + ($data) + ') { '; - } else { - if ($exclIsNumber && $schema === undefined) { - $exclusive = true; - $errorKeyword = $exclusiveKeyword; - $errSchemaPath = it.errSchemaPath + '/' + $exclusiveKeyword; - $schemaValue = $schemaExcl; - $notOp += '='; - } else { - if ($exclIsNumber) $schemaValue = Math[$isMax ? 'min' : 'max']($schemaExcl, $schema); - if ($schemaExcl === ($exclIsNumber ? $schemaValue : true)) { - $exclusive = true; - $errorKeyword = $exclusiveKeyword; - $errSchemaPath = it.errSchemaPath + '/' + $exclusiveKeyword; - $notOp += '='; - } else { - $exclusive = false; - $opStr += '='; - } - } - var $opExpr = '\'' + $opStr + '\''; - out += ' if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - out += ' ' + ($data) + ' ' + ($notOp) + ' ' + ($schemaValue) + ' || ' + ($data) + ' !== ' + ($data) + ') { '; - } - } - $errorKeyword = $errorKeyword || $keyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || '_limit') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { comparison: ' + ($opExpr) + ', limit: ' + ($schemaValue) + ', exclusive: ' + ($exclusive) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should be ' + ($opStr) + ' '; - if ($isData) { - out += '\' + ' + ($schemaValue); - } else { - out += '' + ($schemaValue) + '\''; - } - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],14:[function(require,module,exports){ -'use strict'; -module.exports = function generate__limitItems(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $errorKeyword; - var $data = 'data' + ($dataLvl || ''); - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - var $op = $keyword == 'maxItems' ? '>' : '<'; - out += 'if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - out += ' ' + ($data) + '.length ' + ($op) + ' ' + ($schemaValue) + ') { '; - var $errorKeyword = $keyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || '_limitItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have '; - if ($keyword == 'maxItems') { - out += 'more'; - } else { - out += 'less'; - } - out += ' than '; - if ($isData) { - out += '\' + ' + ($schemaValue) + ' + \''; - } else { - out += '' + ($schema); - } - out += ' items\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += '} '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],15:[function(require,module,exports){ -'use strict'; -module.exports = function generate__limitLength(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $errorKeyword; - var $data = 'data' + ($dataLvl || ''); - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - var $op = $keyword == 'maxLength' ? '>' : '<'; - out += 'if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - if (it.opts.unicode === false) { - out += ' ' + ($data) + '.length '; - } else { - out += ' ucs2length(' + ($data) + ') '; - } - out += ' ' + ($op) + ' ' + ($schemaValue) + ') { '; - var $errorKeyword = $keyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || '_limitLength') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT be '; - if ($keyword == 'maxLength') { - out += 'longer'; - } else { - out += 'shorter'; - } - out += ' than '; - if ($isData) { - out += '\' + ' + ($schemaValue) + ' + \''; - } else { - out += '' + ($schema); - } - out += ' characters\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += '} '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],16:[function(require,module,exports){ -'use strict'; -module.exports = function generate__limitProperties(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $errorKeyword; - var $data = 'data' + ($dataLvl || ''); - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - var $op = $keyword == 'maxProperties' ? '>' : '<'; - out += 'if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'number\') || '; - } - out += ' Object.keys(' + ($data) + ').length ' + ($op) + ' ' + ($schemaValue) + ') { '; - var $errorKeyword = $keyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || '_limitProperties') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schemaValue) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have '; - if ($keyword == 'maxProperties') { - out += 'more'; - } else { - out += 'less'; - } - out += ' than '; - if ($isData) { - out += '\' + ' + ($schemaValue) + ' + \''; - } else { - out += '' + ($schema); - } - out += ' properties\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += '} '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],17:[function(require,module,exports){ -'use strict'; -module.exports = function generate_allOf(it, $keyword, $ruleType) { - var out = ' '; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - var $currentBaseId = $it.baseId, - $allSchemasEmpty = true; - var arr1 = $schema; - if (arr1) { - var $sch, $i = -1, - l1 = arr1.length - 1; - while ($i < l1) { - $sch = arr1[$i += 1]; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - $allSchemasEmpty = false; - $it.schema = $sch; - $it.schemaPath = $schemaPath + '[' + $i + ']'; - $it.errSchemaPath = $errSchemaPath + '/' + $i; - out += ' ' + (it.validate($it)) + ' '; - $it.baseId = $currentBaseId; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - } - } - if ($breakOnError) { - if ($allSchemasEmpty) { - out += ' if (true) { '; - } else { - out += ' ' + ($closingBraces.slice(0, -1)) + ' '; - } - } - out = it.util.cleanUpCode(out); - return out; -} - -},{}],18:[function(require,module,exports){ -'use strict'; -module.exports = function generate_anyOf(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - var $noEmptySchema = $schema.every(function($sch) { - return it.util.schemaHasRules($sch, it.RULES.all); - }); - if ($noEmptySchema) { - var $currentBaseId = $it.baseId; - out += ' var ' + ($errs) + ' = errors; var ' + ($valid) + ' = false; '; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - var arr1 = $schema; - if (arr1) { - var $sch, $i = -1, - l1 = arr1.length - 1; - while ($i < l1) { - $sch = arr1[$i += 1]; - $it.schema = $sch; - $it.schemaPath = $schemaPath + '[' + $i + ']'; - $it.errSchemaPath = $errSchemaPath + '/' + $i; - out += ' ' + (it.validate($it)) + ' '; - $it.baseId = $currentBaseId; - out += ' ' + ($valid) + ' = ' + ($valid) + ' || ' + ($nextValid) + '; if (!' + ($valid) + ') { '; - $closingBraces += '}'; - } - } - it.compositeRule = $it.compositeRule = $wasComposite; - out += ' ' + ($closingBraces) + ' if (!' + ($valid) + ') { var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('anyOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should match some schema in anyOf\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError(vErrors); '; - } else { - out += ' validate.errors = vErrors; return false; '; - } - } - out += ' } else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; - if (it.opts.allErrors) { - out += ' } '; - } - out = it.util.cleanUpCode(out); - } else { - if ($breakOnError) { - out += ' if (true) { '; - } - } - return out; -} - -},{}],19:[function(require,module,exports){ -'use strict'; -module.exports = function generate_const(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - if (!$isData) { - out += ' var schema' + ($lvl) + ' = validate.schema' + ($schemaPath) + ';'; - } - out += 'var ' + ($valid) + ' = equal(' + ($data) + ', schema' + ($lvl) + '); if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('const') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should be equal to constant\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' }'; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],20:[function(require,module,exports){ -'use strict'; -module.exports = function generate_contains(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - var $idx = 'i' + $lvl, - $dataNxt = $it.dataLevel = it.dataLevel + 1, - $nextData = 'data' + $dataNxt, - $currentBaseId = it.baseId, - $nonEmptySchema = it.util.schemaHasRules($schema, it.RULES.all); - out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; - if ($nonEmptySchema) { - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - $it.schema = $schema; - $it.schemaPath = $schemaPath; - $it.errSchemaPath = $errSchemaPath; - out += ' var ' + ($nextValid) + ' = false; for (var ' + ($idx) + ' = 0; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; - $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); - var $passData = $data + '[' + $idx + ']'; - $it.dataPathArr[$dataNxt] = $idx; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - out += ' if (' + ($nextValid) + ') break; } '; - it.compositeRule = $it.compositeRule = $wasComposite; - out += ' ' + ($closingBraces) + ' if (!' + ($nextValid) + ') {'; - } else { - out += ' if (' + ($data) + '.length == 0) {'; - } - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('contains') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should contain a valid item\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else { '; - if ($nonEmptySchema) { - out += ' errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; - } - if (it.opts.allErrors) { - out += ' } '; - } - out = it.util.cleanUpCode(out); - return out; -} - -},{}],21:[function(require,module,exports){ -'use strict'; -module.exports = function generate_custom(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $errorKeyword; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - var $rule = this, - $definition = 'definition' + $lvl, - $rDef = $rule.definition, - $closingBraces = ''; - var $compile, $inline, $macro, $ruleValidate, $validateCode; - if ($isData && $rDef.$data) { - $validateCode = 'keywordValidate' + $lvl; - var $validateSchema = $rDef.validateSchema; - out += ' var ' + ($definition) + ' = RULES.custom[\'' + ($keyword) + '\'].definition; var ' + ($validateCode) + ' = ' + ($definition) + '.validate;'; - } else { - $ruleValidate = it.useCustomRule($rule, $schema, it.schema, it); - if (!$ruleValidate) return; - $schemaValue = 'validate.schema' + $schemaPath; - $validateCode = $ruleValidate.code; - $compile = $rDef.compile; - $inline = $rDef.inline; - $macro = $rDef.macro; - } - var $ruleErrs = $validateCode + '.errors', - $i = 'i' + $lvl, - $ruleErr = 'ruleErr' + $lvl, - $asyncKeyword = $rDef.async; - if ($asyncKeyword && !it.async) throw new Error('async keyword in sync schema'); - if (!($inline || $macro)) { - out += '' + ($ruleErrs) + ' = null;'; - } - out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; - if ($isData && $rDef.$data) { - $closingBraces += '}'; - out += ' if (' + ($schemaValue) + ' === undefined) { ' + ($valid) + ' = true; } else { '; - if ($validateSchema) { - $closingBraces += '}'; - out += ' ' + ($valid) + ' = ' + ($definition) + '.validateSchema(' + ($schemaValue) + '); if (' + ($valid) + ') { '; - } - } - if ($inline) { - if ($rDef.statements) { - out += ' ' + ($ruleValidate.validate) + ' '; - } else { - out += ' ' + ($valid) + ' = ' + ($ruleValidate.validate) + '; '; - } - } else if ($macro) { - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - $it.schema = $ruleValidate.validate; - $it.schemaPath = ''; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - var $code = it.validate($it).replace(/validate\.schema/g, $validateCode); - it.compositeRule = $it.compositeRule = $wasComposite; - out += ' ' + ($code); - } else { - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; - out += ' ' + ($validateCode) + '.call( '; - if (it.opts.passContext) { - out += 'this'; - } else { - out += 'self'; - } - if ($compile || $rDef.schema === false) { - out += ' , ' + ($data) + ' '; - } else { - out += ' , ' + ($schemaValue) + ' , ' + ($data) + ' , validate.schema' + (it.schemaPath) + ' '; - } - out += ' , (dataPath || \'\')'; - if (it.errorPath != '""') { - out += ' + ' + (it.errorPath); - } - var $parentData = $dataLvl ? 'data' + (($dataLvl - 1) || '') : 'parentData', - $parentDataProperty = $dataLvl ? it.dataPathArr[$dataLvl] : 'parentDataProperty'; - out += ' , ' + ($parentData) + ' , ' + ($parentDataProperty) + ' , rootData ) '; - var def_callRuleValidate = out; - out = $$outStack.pop(); - if ($rDef.errors === false) { - out += ' ' + ($valid) + ' = '; - if ($asyncKeyword) { - out += '' + (it.yieldAwait); - } - out += '' + (def_callRuleValidate) + '; '; - } else { - if ($asyncKeyword) { - $ruleErrs = 'customErrors' + $lvl; - out += ' var ' + ($ruleErrs) + ' = null; try { ' + ($valid) + ' = ' + (it.yieldAwait) + (def_callRuleValidate) + '; } catch (e) { ' + ($valid) + ' = false; if (e instanceof ValidationError) ' + ($ruleErrs) + ' = e.errors; else throw e; } '; - } else { - out += ' ' + ($ruleErrs) + ' = null; ' + ($valid) + ' = ' + (def_callRuleValidate) + '; '; - } - } - } - if ($rDef.modifying) { - out += ' if (' + ($parentData) + ') ' + ($data) + ' = ' + ($parentData) + '[' + ($parentDataProperty) + '];'; - } - out += '' + ($closingBraces); - if ($rDef.valid) { - if ($breakOnError) { - out += ' if (true) { '; - } - } else { - out += ' if ( '; - if ($rDef.valid === undefined) { - out += ' !'; - if ($macro) { - out += '' + ($nextValid); - } else { - out += '' + ($valid); - } - } else { - out += ' ' + (!$rDef.valid) + ' '; - } - out += ') { '; - $errorKeyword = $rule.keyword; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || 'custom') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { keyword: \'' + ($rule.keyword) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should pass "' + ($rule.keyword) + '" keyword validation\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - var def_customError = out; - out = $$outStack.pop(); - if ($inline) { - if ($rDef.errors) { - if ($rDef.errors != 'full') { - out += ' for (var ' + ($i) + '=' + ($errs) + '; ' + ($i) + '= 0) { - if ($breakOnError) { - out += ' if (true) { '; - } - return out; - } else { - throw new Error('unknown format "' + $schema + '" is used in schema at path "' + it.errSchemaPath + '"'); - } - } - var $isObject = typeof $format == 'object' && !($format instanceof RegExp) && $format.validate; - var $formatType = $isObject && $format.type || 'string'; - if ($isObject) { - var $async = $format.async === true; - $format = $format.validate; - } - if ($formatType != $ruleType) { - if ($breakOnError) { - out += ' if (true) { '; - } - return out; - } - if ($async) { - if (!it.async) throw new Error('async format in sync schema'); - var $formatRef = 'formats' + it.util.getProperty($schema) + '.validate'; - out += ' if (!(' + (it.yieldAwait) + ' ' + ($formatRef) + '(' + ($data) + '))) { '; - } else { - out += ' if (! '; - var $formatRef = 'formats' + it.util.getProperty($schema); - if ($isObject) $formatRef += '.validate'; - if (typeof $format == 'function') { - out += ' ' + ($formatRef) + '(' + ($data) + ') '; - } else { - out += ' ' + ($formatRef) + '.test(' + ($data) + ') '; - } - out += ') { '; - } - } - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('format') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { format: '; - if ($isData) { - out += '' + ($schemaValue); - } else { - out += '' + (it.util.toQuotedString($schema)); - } - out += ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should match format "'; - if ($isData) { - out += '\' + ' + ($schemaValue) + ' + \''; - } else { - out += '' + (it.util.escapeQuotes($schema)); - } - out += '"\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + (it.util.toQuotedString($schema)); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],25:[function(require,module,exports){ -'use strict'; -module.exports = function generate_items(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - var $idx = 'i' + $lvl, - $dataNxt = $it.dataLevel = it.dataLevel + 1, - $nextData = 'data' + $dataNxt, - $currentBaseId = it.baseId; - out += 'var ' + ($errs) + ' = errors;var ' + ($valid) + ';'; - if (Array.isArray($schema)) { - var $additionalItems = it.schema.additionalItems; - if ($additionalItems === false) { - out += ' ' + ($valid) + ' = ' + ($data) + '.length <= ' + ($schema.length) + '; '; - var $currErrSchemaPath = $errSchemaPath; - $errSchemaPath = it.errSchemaPath + '/additionalItems'; - out += ' if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('additionalItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { limit: ' + ($schema.length) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have more than ' + ($schema.length) + ' items\' '; - } - if (it.opts.verbose) { - out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - $errSchemaPath = $currErrSchemaPath; - if ($breakOnError) { - $closingBraces += '}'; - out += ' else { '; - } - } - var arr1 = $schema; - if (arr1) { - var $sch, $i = -1, - l1 = arr1.length - 1; - while ($i < l1) { - $sch = arr1[$i += 1]; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - out += ' ' + ($nextValid) + ' = true; if (' + ($data) + '.length > ' + ($i) + ') { '; - var $passData = $data + '[' + $i + ']'; - $it.schema = $sch; - $it.schemaPath = $schemaPath + '[' + $i + ']'; - $it.errSchemaPath = $errSchemaPath + '/' + $i; - $it.errorPath = it.util.getPathExpr(it.errorPath, $i, it.opts.jsonPointers, true); - $it.dataPathArr[$dataNxt] = $i; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - out += ' } '; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - } - } - if (typeof $additionalItems == 'object' && it.util.schemaHasRules($additionalItems, it.RULES.all)) { - $it.schema = $additionalItems; - $it.schemaPath = it.schemaPath + '.additionalItems'; - $it.errSchemaPath = it.errSchemaPath + '/additionalItems'; - out += ' ' + ($nextValid) + ' = true; if (' + ($data) + '.length > ' + ($schema.length) + ') { for (var ' + ($idx) + ' = ' + ($schema.length) + '; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; - $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); - var $passData = $data + '[' + $idx + ']'; - $it.dataPathArr[$dataNxt] = $idx; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - if ($breakOnError) { - out += ' if (!' + ($nextValid) + ') break; '; - } - out += ' } } '; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - } else if (it.util.schemaHasRules($schema, it.RULES.all)) { - $it.schema = $schema; - $it.schemaPath = $schemaPath; - $it.errSchemaPath = $errSchemaPath; - out += ' for (var ' + ($idx) + ' = ' + (0) + '; ' + ($idx) + ' < ' + ($data) + '.length; ' + ($idx) + '++) { '; - $it.errorPath = it.util.getPathExpr(it.errorPath, $idx, it.opts.jsonPointers, true); - var $passData = $data + '[' + $idx + ']'; - $it.dataPathArr[$dataNxt] = $idx; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - if ($breakOnError) { - out += ' if (!' + ($nextValid) + ') break; '; - } - out += ' }'; - } - if ($breakOnError) { - out += ' ' + ($closingBraces) + ' if (' + ($errs) + ' == errors) {'; - } - out = it.util.cleanUpCode(out); - return out; -} - -},{}],26:[function(require,module,exports){ -'use strict'; -module.exports = function generate_multipleOf(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - out += 'var division' + ($lvl) + ';if ('; - if ($isData) { - out += ' ' + ($schemaValue) + ' !== undefined && ( typeof ' + ($schemaValue) + ' != \'number\' || '; - } - out += ' (division' + ($lvl) + ' = ' + ($data) + ' / ' + ($schemaValue) + ', '; - if (it.opts.multipleOfPrecision) { - out += ' Math.abs(Math.round(division' + ($lvl) + ') - division' + ($lvl) + ') > 1e-' + (it.opts.multipleOfPrecision) + ' '; - } else { - out += ' division' + ($lvl) + ' !== parseInt(division' + ($lvl) + ') '; - } - out += ' ) '; - if ($isData) { - out += ' ) '; - } - out += ' ) { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('multipleOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { multipleOf: ' + ($schemaValue) + ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should be multiple of '; - if ($isData) { - out += '\' + ' + ($schemaValue); - } else { - out += '' + ($schemaValue) + '\''; - } - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += '} '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],27:[function(require,module,exports){ -'use strict'; -module.exports = function generate_not(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - $it.level++; - var $nextValid = 'valid' + $it.level; - if (it.util.schemaHasRules($schema, it.RULES.all)) { - $it.schema = $schema; - $it.schemaPath = $schemaPath; - $it.errSchemaPath = $errSchemaPath; - out += ' var ' + ($errs) + ' = errors; '; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - $it.createErrors = false; - var $allErrorsOption; - if ($it.opts.allErrors) { - $allErrorsOption = $it.opts.allErrors; - $it.opts.allErrors = false; - } - out += ' ' + (it.validate($it)) + ' '; - $it.createErrors = true; - if ($allErrorsOption) $it.opts.allErrors = $allErrorsOption; - it.compositeRule = $it.compositeRule = $wasComposite; - out += ' if (' + ($nextValid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('not') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT be valid\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; } '; - if (it.opts.allErrors) { - out += ' } '; - } - } else { - out += ' var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('not') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT be valid\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - if ($breakOnError) { - out += ' if (false) { '; - } - } - return out; -} - -},{}],28:[function(require,module,exports){ -'use strict'; -module.exports = function generate_oneOf(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - out += 'var ' + ($errs) + ' = errors;var prevValid' + ($lvl) + ' = false;var ' + ($valid) + ' = false;'; - var $currentBaseId = $it.baseId; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - var arr1 = $schema; - if (arr1) { - var $sch, $i = -1, - l1 = arr1.length - 1; - while ($i < l1) { - $sch = arr1[$i += 1]; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - $it.schema = $sch; - $it.schemaPath = $schemaPath + '[' + $i + ']'; - $it.errSchemaPath = $errSchemaPath + '/' + $i; - out += ' ' + (it.validate($it)) + ' '; - $it.baseId = $currentBaseId; - } else { - out += ' var ' + ($nextValid) + ' = true; '; - } - if ($i) { - out += ' if (' + ($nextValid) + ' && prevValid' + ($lvl) + ') ' + ($valid) + ' = false; else { '; - $closingBraces += '}'; - } - out += ' if (' + ($nextValid) + ') ' + ($valid) + ' = prevValid' + ($lvl) + ' = true;'; - } - } - it.compositeRule = $it.compositeRule = $wasComposite; - out += '' + ($closingBraces) + 'if (!' + ($valid) + ') { var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('oneOf') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'should match exactly one schema in oneOf\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError(vErrors); '; - } else { - out += ' validate.errors = vErrors; return false; '; - } - } - out += '} else { errors = ' + ($errs) + '; if (vErrors !== null) { if (' + ($errs) + ') vErrors.length = ' + ($errs) + '; else vErrors = null; }'; - if (it.opts.allErrors) { - out += ' } '; - } - return out; -} - -},{}],29:[function(require,module,exports){ -'use strict'; -module.exports = function generate_pattern(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - var $regexp = $isData ? '(new RegExp(' + $schemaValue + '))' : it.usePattern($schema); - out += 'if ( '; - if ($isData) { - out += ' (' + ($schemaValue) + ' !== undefined && typeof ' + ($schemaValue) + ' != \'string\') || '; - } - out += ' !' + ($regexp) + '.test(' + ($data) + ') ) { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('pattern') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { pattern: '; - if ($isData) { - out += '' + ($schemaValue); - } else { - out += '' + (it.util.toQuotedString($schema)); - } - out += ' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should match pattern "'; - if ($isData) { - out += '\' + ' + ($schemaValue) + ' + \''; - } else { - out += '' + (it.util.escapeQuotes($schema)); - } - out += '"\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + (it.util.toQuotedString($schema)); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += '} '; - if ($breakOnError) { - out += ' else { '; - } - return out; -} - -},{}],30:[function(require,module,exports){ -'use strict'; -module.exports = function generate_properties(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - var $key = 'key' + $lvl, - $idx = 'idx' + $lvl, - $dataNxt = $it.dataLevel = it.dataLevel + 1, - $nextData = 'data' + $dataNxt, - $dataProperties = 'dataProperties' + $lvl; - var $schemaKeys = Object.keys($schema || {}), - $pProperties = it.schema.patternProperties || {}, - $pPropertyKeys = Object.keys($pProperties), - $aProperties = it.schema.additionalProperties, - $someProperties = $schemaKeys.length || $pPropertyKeys.length, - $noAdditional = $aProperties === false, - $additionalIsSchema = typeof $aProperties == 'object' && Object.keys($aProperties).length, - $removeAdditional = it.opts.removeAdditional, - $checkAdditional = $noAdditional || $additionalIsSchema || $removeAdditional, - $ownProperties = it.opts.ownProperties, - $currentBaseId = it.baseId; - var $required = it.schema.required; - if ($required && !(it.opts.v5 && $required.$data) && $required.length < it.opts.loopRequired) var $requiredHash = it.util.toHash($required); - if (it.opts.patternGroups) { - var $pgProperties = it.schema.patternGroups || {}, - $pgPropertyKeys = Object.keys($pgProperties); - } - out += 'var ' + ($errs) + ' = errors;var ' + ($nextValid) + ' = true;'; - if ($ownProperties) { - out += ' var ' + ($dataProperties) + ' = undefined;'; - } - if ($checkAdditional) { - if ($ownProperties) { - out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; - } else { - out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; - } - if ($someProperties) { - out += ' var isAdditional' + ($lvl) + ' = !(false '; - if ($schemaKeys.length) { - if ($schemaKeys.length > 5) { - out += ' || validate.schema' + ($schemaPath) + '[' + ($key) + '] '; - } else { - var arr1 = $schemaKeys; - if (arr1) { - var $propertyKey, i1 = -1, - l1 = arr1.length - 1; - while (i1 < l1) { - $propertyKey = arr1[i1 += 1]; - out += ' || ' + ($key) + ' == ' + (it.util.toQuotedString($propertyKey)) + ' '; - } - } - } - } - if ($pPropertyKeys.length) { - var arr2 = $pPropertyKeys; - if (arr2) { - var $pProperty, $i = -1, - l2 = arr2.length - 1; - while ($i < l2) { - $pProperty = arr2[$i += 1]; - out += ' || ' + (it.usePattern($pProperty)) + '.test(' + ($key) + ') '; - } - } - } - if (it.opts.patternGroups && $pgPropertyKeys.length) { - var arr3 = $pgPropertyKeys; - if (arr3) { - var $pgProperty, $i = -1, - l3 = arr3.length - 1; - while ($i < l3) { - $pgProperty = arr3[$i += 1]; - out += ' || ' + (it.usePattern($pgProperty)) + '.test(' + ($key) + ') '; - } - } - } - out += ' ); if (isAdditional' + ($lvl) + ') { '; - } - if ($removeAdditional == 'all') { - out += ' delete ' + ($data) + '[' + ($key) + ']; '; - } else { - var $currentErrorPath = it.errorPath; - var $additionalProperty = '\' + ' + $key + ' + \''; - if (it.opts._errorDataPathProperty) { - it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); - } - if ($noAdditional) { - if ($removeAdditional) { - out += ' delete ' + ($data) + '[' + ($key) + ']; '; - } else { - out += ' ' + ($nextValid) + ' = false; '; - var $currErrSchemaPath = $errSchemaPath; - $errSchemaPath = it.errSchemaPath + '/additionalProperties'; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('additionalProperties') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { additionalProperty: \'' + ($additionalProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have additional properties\' '; - } - if (it.opts.verbose) { - out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - $errSchemaPath = $currErrSchemaPath; - if ($breakOnError) { - out += ' break; '; - } - } - } else if ($additionalIsSchema) { - if ($removeAdditional == 'failing') { - out += ' var ' + ($errs) + ' = errors; '; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - $it.schema = $aProperties; - $it.schemaPath = it.schemaPath + '.additionalProperties'; - $it.errSchemaPath = it.errSchemaPath + '/additionalProperties'; - $it.errorPath = it.opts._errorDataPathProperty ? it.errorPath : it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); - var $passData = $data + '[' + $key + ']'; - $it.dataPathArr[$dataNxt] = $key; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - out += ' if (!' + ($nextValid) + ') { errors = ' + ($errs) + '; if (validate.errors !== null) { if (errors) validate.errors.length = errors; else validate.errors = null; } delete ' + ($data) + '[' + ($key) + ']; } '; - it.compositeRule = $it.compositeRule = $wasComposite; - } else { - $it.schema = $aProperties; - $it.schemaPath = it.schemaPath + '.additionalProperties'; - $it.errSchemaPath = it.errSchemaPath + '/additionalProperties'; - $it.errorPath = it.opts._errorDataPathProperty ? it.errorPath : it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); - var $passData = $data + '[' + $key + ']'; - $it.dataPathArr[$dataNxt] = $key; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - if ($breakOnError) { - out += ' if (!' + ($nextValid) + ') break; '; - } - } - } - it.errorPath = $currentErrorPath; - } - if ($someProperties) { - out += ' } '; - } - out += ' } '; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - var $useDefaults = it.opts.useDefaults && !it.compositeRule; - if ($schemaKeys.length) { - var arr4 = $schemaKeys; - if (arr4) { - var $propertyKey, i4 = -1, - l4 = arr4.length - 1; - while (i4 < l4) { - $propertyKey = arr4[i4 += 1]; - var $sch = $schema[$propertyKey]; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - var $prop = it.util.getProperty($propertyKey), - $passData = $data + $prop, - $hasDefault = $useDefaults && $sch.default !== undefined; - $it.schema = $sch; - $it.schemaPath = $schemaPath + $prop; - $it.errSchemaPath = $errSchemaPath + '/' + it.util.escapeFragment($propertyKey); - $it.errorPath = it.util.getPath(it.errorPath, $propertyKey, it.opts.jsonPointers); - $it.dataPathArr[$dataNxt] = it.util.toQuotedString($propertyKey); - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - $code = it.util.varReplace($code, $nextData, $passData); - var $useData = $passData; - } else { - var $useData = $nextData; - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; '; - } - if ($hasDefault) { - out += ' ' + ($code) + ' '; - } else { - if ($requiredHash && $requiredHash[$propertyKey]) { - out += ' if ( ' + ($useData) + ' === undefined '; - if ($ownProperties) { - out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; - } - out += ') { ' + ($nextValid) + ' = false; '; - var $currentErrorPath = it.errorPath, - $currErrSchemaPath = $errSchemaPath, - $missingProperty = it.util.escapeQuotes($propertyKey); - if (it.opts._errorDataPathProperty) { - it.errorPath = it.util.getPath($currentErrorPath, $propertyKey, it.opts.jsonPointers); - } - $errSchemaPath = it.errSchemaPath + '/required'; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - $errSchemaPath = $currErrSchemaPath; - it.errorPath = $currentErrorPath; - out += ' } else { '; - } else { - if ($breakOnError) { - out += ' if ( ' + ($useData) + ' === undefined '; - if ($ownProperties) { - out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; - } - out += ') { ' + ($nextValid) + ' = true; } else { '; - } else { - out += ' if (' + ($useData) + ' !== undefined '; - if ($ownProperties) { - out += ' && Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; - } - out += ' ) { '; - } - } - out += ' ' + ($code) + ' } '; - } - } - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - } - } - if ($pPropertyKeys.length) { - var arr5 = $pPropertyKeys; - if (arr5) { - var $pProperty, i5 = -1, - l5 = arr5.length - 1; - while (i5 < l5) { - $pProperty = arr5[i5 += 1]; - var $sch = $pProperties[$pProperty]; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - $it.schema = $sch; - $it.schemaPath = it.schemaPath + '.patternProperties' + it.util.getProperty($pProperty); - $it.errSchemaPath = it.errSchemaPath + '/patternProperties/' + it.util.escapeFragment($pProperty); - if ($ownProperties) { - out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; - } else { - out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; - } - out += ' if (' + (it.usePattern($pProperty)) + '.test(' + ($key) + ')) { '; - $it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); - var $passData = $data + '[' + $key + ']'; - $it.dataPathArr[$dataNxt] = $key; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - if ($breakOnError) { - out += ' if (!' + ($nextValid) + ') break; '; - } - out += ' } '; - if ($breakOnError) { - out += ' else ' + ($nextValid) + ' = true; '; - } - out += ' } '; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - } - } - } - } - if (it.opts.patternGroups && $pgPropertyKeys.length) { - var arr6 = $pgPropertyKeys; - if (arr6) { - var $pgProperty, i6 = -1, - l6 = arr6.length - 1; - while (i6 < l6) { - $pgProperty = arr6[i6 += 1]; - var $pgSchema = $pgProperties[$pgProperty], - $sch = $pgSchema.schema; - if (it.util.schemaHasRules($sch, it.RULES.all)) { - $it.schema = $sch; - $it.schemaPath = it.schemaPath + '.patternGroups' + it.util.getProperty($pgProperty) + '.schema'; - $it.errSchemaPath = it.errSchemaPath + '/patternGroups/' + it.util.escapeFragment($pgProperty) + '/schema'; - out += ' var pgPropCount' + ($lvl) + ' = 0; '; - if ($ownProperties) { - out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; - } else { - out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; - } - out += ' if (' + (it.usePattern($pgProperty)) + '.test(' + ($key) + ')) { pgPropCount' + ($lvl) + '++; '; - $it.errorPath = it.util.getPathExpr(it.errorPath, $key, it.opts.jsonPointers); - var $passData = $data + '[' + $key + ']'; - $it.dataPathArr[$dataNxt] = $key; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - if ($breakOnError) { - out += ' if (!' + ($nextValid) + ') break; '; - } - out += ' } '; - if ($breakOnError) { - out += ' else ' + ($nextValid) + ' = true; '; - } - out += ' } '; - if ($breakOnError) { - out += ' if (' + ($nextValid) + ') { '; - $closingBraces += '}'; - } - var $pgMin = $pgSchema.minimum, - $pgMax = $pgSchema.maximum; - if ($pgMin !== undefined || $pgMax !== undefined) { - out += ' var ' + ($valid) + ' = true; '; - var $currErrSchemaPath = $errSchemaPath; - if ($pgMin !== undefined) { - var $limit = $pgMin, - $reason = 'minimum', - $moreOrLess = 'less'; - out += ' ' + ($valid) + ' = pgPropCount' + ($lvl) + ' >= ' + ($pgMin) + '; '; - $errSchemaPath = it.errSchemaPath + '/patternGroups/minimum'; - out += ' if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('patternGroups') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { reason: \'' + ($reason) + '\', limit: ' + ($limit) + ', pattern: \'' + (it.util.escapeQuotes($pgProperty)) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have ' + ($moreOrLess) + ' than ' + ($limit) + ' properties matching pattern "' + (it.util.escapeQuotes($pgProperty)) + '"\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - if ($pgMax !== undefined) { - out += ' else '; - } - } - if ($pgMax !== undefined) { - var $limit = $pgMax, - $reason = 'maximum', - $moreOrLess = 'more'; - out += ' ' + ($valid) + ' = pgPropCount' + ($lvl) + ' <= ' + ($pgMax) + '; '; - $errSchemaPath = it.errSchemaPath + '/patternGroups/maximum'; - out += ' if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('patternGroups') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { reason: \'' + ($reason) + '\', limit: ' + ($limit) + ', pattern: \'' + (it.util.escapeQuotes($pgProperty)) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have ' + ($moreOrLess) + ' than ' + ($limit) + ' properties matching pattern "' + (it.util.escapeQuotes($pgProperty)) + '"\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - } - $errSchemaPath = $currErrSchemaPath; - if ($breakOnError) { - out += ' if (' + ($valid) + ') { '; - $closingBraces += '}'; - } - } - } - } - } - } - if ($breakOnError) { - out += ' ' + ($closingBraces) + ' if (' + ($errs) + ' == errors) {'; - } - out = it.util.cleanUpCode(out); - return out; -} - -},{}],31:[function(require,module,exports){ -'use strict'; -module.exports = function generate_propertyNames(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $errs = 'errs__' + $lvl; - var $it = it.util.copy(it); - var $closingBraces = ''; - $it.level++; - var $nextValid = 'valid' + $it.level; - if (it.util.schemaHasRules($schema, it.RULES.all)) { - $it.schema = $schema; - $it.schemaPath = $schemaPath; - $it.errSchemaPath = $errSchemaPath; - var $key = 'key' + $lvl, - $idx = 'idx' + $lvl, - $i = 'i' + $lvl, - $invalidName = '\' + ' + $key + ' + \'', - $dataNxt = $it.dataLevel = it.dataLevel + 1, - $nextData = 'data' + $dataNxt, - $dataProperties = 'dataProperties' + $lvl, - $ownProperties = it.opts.ownProperties, - $currentBaseId = it.baseId; - out += ' var ' + ($errs) + ' = errors; '; - if ($ownProperties) { - out += ' var ' + ($dataProperties) + ' = undefined; '; - } - if ($ownProperties) { - out += ' ' + ($dataProperties) + ' = ' + ($dataProperties) + ' || Object.keys(' + ($data) + '); for (var ' + ($idx) + '=0; ' + ($idx) + '<' + ($dataProperties) + '.length; ' + ($idx) + '++) { var ' + ($key) + ' = ' + ($dataProperties) + '[' + ($idx) + ']; '; - } else { - out += ' for (var ' + ($key) + ' in ' + ($data) + ') { '; - } - out += ' var startErrs' + ($lvl) + ' = errors; '; - var $passData = $key; - var $wasComposite = it.compositeRule; - it.compositeRule = $it.compositeRule = true; - var $code = it.validate($it); - $it.baseId = $currentBaseId; - if (it.util.varOccurences($code, $nextData) < 2) { - out += ' ' + (it.util.varReplace($code, $nextData, $passData)) + ' '; - } else { - out += ' var ' + ($nextData) + ' = ' + ($passData) + '; ' + ($code) + ' '; - } - it.compositeRule = $it.compositeRule = $wasComposite; - out += ' if (!' + ($nextValid) + ') { for (var ' + ($i) + '=startErrs' + ($lvl) + '; ' + ($i) + '= it.opts.loopRequired, - $ownProperties = it.opts.ownProperties; - if ($breakOnError) { - out += ' var missing' + ($lvl) + '; '; - if ($loopRequired) { - if (!$isData) { - out += ' var ' + ($vSchema) + ' = validate.schema' + ($schemaPath) + '; '; - } - var $i = 'i' + $lvl, - $propertyPath = 'schema' + $lvl + '[' + $i + ']', - $missingProperty = '\' + ' + $propertyPath + ' + \''; - if (it.opts._errorDataPathProperty) { - it.errorPath = it.util.getPathExpr($currentErrorPath, $propertyPath, it.opts.jsonPointers); - } - out += ' var ' + ($valid) + ' = true; '; - if ($isData) { - out += ' if (schema' + ($lvl) + ' === undefined) ' + ($valid) + ' = true; else if (!Array.isArray(schema' + ($lvl) + ')) ' + ($valid) + ' = false; else {'; - } - out += ' for (var ' + ($i) + ' = 0; ' + ($i) + ' < ' + ($vSchema) + '.length; ' + ($i) + '++) { ' + ($valid) + ' = ' + ($data) + '[' + ($vSchema) + '[' + ($i) + ']] !== undefined '; - if ($ownProperties) { - out += ' && Object.prototype.hasOwnProperty.call(' + ($data) + ', ' + ($vSchema) + '[' + ($i) + ']) '; - } - out += '; if (!' + ($valid) + ') break; } '; - if ($isData) { - out += ' } '; - } - out += ' if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else { '; - } else { - out += ' if ( '; - var arr2 = $required; - if (arr2) { - var $propertyKey, $i = -1, - l2 = arr2.length - 1; - while ($i < l2) { - $propertyKey = arr2[$i += 1]; - if ($i) { - out += ' || '; - } - var $prop = it.util.getProperty($propertyKey), - $useData = $data + $prop; - out += ' ( ( ' + ($useData) + ' === undefined '; - if ($ownProperties) { - out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; - } - out += ') && (missing' + ($lvl) + ' = ' + (it.util.toQuotedString(it.opts.jsonPointers ? $propertyKey : $prop)) + ') ) '; - } - } - out += ') { '; - var $propertyPath = 'missing' + $lvl, - $missingProperty = '\' + ' + $propertyPath + ' + \''; - if (it.opts._errorDataPathProperty) { - it.errorPath = it.opts.jsonPointers ? it.util.getPathExpr($currentErrorPath, $propertyPath, true) : $currentErrorPath + ' + ' + $propertyPath; - } - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else { '; - } - } else { - if ($loopRequired) { - if (!$isData) { - out += ' var ' + ($vSchema) + ' = validate.schema' + ($schemaPath) + '; '; - } - var $i = 'i' + $lvl, - $propertyPath = 'schema' + $lvl + '[' + $i + ']', - $missingProperty = '\' + ' + $propertyPath + ' + \''; - if (it.opts._errorDataPathProperty) { - it.errorPath = it.util.getPathExpr($currentErrorPath, $propertyPath, it.opts.jsonPointers); - } - if ($isData) { - out += ' if (' + ($vSchema) + ' && !Array.isArray(' + ($vSchema) + ')) { var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } else if (' + ($vSchema) + ' !== undefined) { '; - } - out += ' for (var ' + ($i) + ' = 0; ' + ($i) + ' < ' + ($vSchema) + '.length; ' + ($i) + '++) { if (' + ($data) + '[' + ($vSchema) + '[' + ($i) + ']] === undefined '; - if ($ownProperties) { - out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', ' + ($vSchema) + '[' + ($i) + ']) '; - } - out += ') { var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } } '; - if ($isData) { - out += ' } '; - } - } else { - var arr3 = $required; - if (arr3) { - var $propertyKey, i3 = -1, - l3 = arr3.length - 1; - while (i3 < l3) { - $propertyKey = arr3[i3 += 1]; - var $prop = it.util.getProperty($propertyKey), - $missingProperty = it.util.escapeQuotes($propertyKey), - $useData = $data + $prop; - if (it.opts._errorDataPathProperty) { - it.errorPath = it.util.getPath($currentErrorPath, $propertyKey, it.opts.jsonPointers); - } - out += ' if ( ' + ($useData) + ' === undefined '; - if ($ownProperties) { - out += ' || ! Object.prototype.hasOwnProperty.call(' + ($data) + ', \'' + (it.util.escapeQuotes($propertyKey)) + '\') '; - } - out += ') { var err = '; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('required') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { missingProperty: \'' + ($missingProperty) + '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \''; - if (it.opts._errorDataPathProperty) { - out += 'is a required property'; - } else { - out += 'should have required property \\\'' + ($missingProperty) + '\\\''; - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - out += '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; } '; - } - } - } - } - it.errorPath = $currentErrorPath; - } else if ($breakOnError) { - out += ' if (true) {'; - } - return out; -} - -},{}],34:[function(require,module,exports){ -'use strict'; -module.exports = function generate_uniqueItems(it, $keyword, $ruleType) { - var out = ' '; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - var $isData = it.opts.$data && $schema && $schema.$data, - $schemaValue; - if ($isData) { - out += ' var schema' + ($lvl) + ' = ' + (it.util.getData($schema.$data, $dataLvl, it.dataPathArr)) + '; '; - $schemaValue = 'schema' + $lvl; - } else { - $schemaValue = $schema; - } - if (($schema || $isData) && it.opts.uniqueItems !== false) { - if ($isData) { - out += ' var ' + ($valid) + '; if (' + ($schemaValue) + ' === false || ' + ($schemaValue) + ' === undefined) ' + ($valid) + ' = true; else if (typeof ' + ($schemaValue) + ' != \'boolean\') ' + ($valid) + ' = false; else { '; - } - out += ' var ' + ($valid) + ' = true; if (' + ($data) + '.length > 1) { var i = ' + ($data) + '.length, j; outer: for (;i--;) { for (j = i; j--;) { if (equal(' + ($data) + '[i], ' + ($data) + '[j])) { ' + ($valid) + ' = false; break outer; } } } } '; - if ($isData) { - out += ' } '; - } - out += ' if (!' + ($valid) + ') { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ('uniqueItems') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { i: i, j: j } '; - if (it.opts.messages !== false) { - out += ' , message: \'should NOT have duplicate items (items ## \' + j + \' and \' + i + \' are identical)\' '; - } - if (it.opts.verbose) { - out += ' , schema: '; - if ($isData) { - out += 'validate.schema' + ($schemaPath); - } else { - out += '' + ($schema); - } - out += ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - if ($breakOnError) { - out += ' else { '; - } - } else { - if ($breakOnError) { - out += ' if (true) { '; - } - } - return out; -} - -},{}],35:[function(require,module,exports){ -'use strict'; -module.exports = function generate_validate(it, $keyword, $ruleType) { - var out = ''; - var $async = it.schema.$async === true, - $refKeywords = it.util.schemaHasRulesExcept(it.schema, it.RULES.all, '$ref'), - $id = it.self._getId(it.schema); - if (it.isTop) { - if ($async) { - it.async = true; - var $es7 = it.opts.async == 'es7'; - it.yieldAwait = $es7 ? 'await' : 'yield'; - } - out += ' var validate = '; - if ($async) { - if ($es7) { - out += ' (async function '; - } else { - if (it.opts.async != '*') { - out += 'co.wrap'; - } - out += '(function* '; - } - } else { - out += ' (function '; - } - out += ' (data, dataPath, parentData, parentDataProperty, rootData) { \'use strict\'; '; - if ($id && (it.opts.sourceCode || it.opts.processCode)) { - out += ' ' + ('/\*# sourceURL=' + $id + ' */') + ' '; - } - } - if (typeof it.schema == 'boolean' || !($refKeywords || it.schema.$ref)) { - var $keyword = 'false schema'; - var $lvl = it.level; - var $dataLvl = it.dataLevel; - var $schema = it.schema[$keyword]; - var $schemaPath = it.schemaPath + it.util.getProperty($keyword); - var $errSchemaPath = it.errSchemaPath + '/' + $keyword; - var $breakOnError = !it.opts.allErrors; - var $errorKeyword; - var $data = 'data' + ($dataLvl || ''); - var $valid = 'valid' + $lvl; - if (it.schema === false) { - if (it.isTop) { - $breakOnError = true; - } else { - out += ' var ' + ($valid) + ' = false; '; - } - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || 'false schema') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: {} '; - if (it.opts.messages !== false) { - out += ' , message: \'boolean schema is false\' '; - } - if (it.opts.verbose) { - out += ' , schema: false , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - } else { - if (it.isTop) { - if ($async) { - out += ' return data; '; - } else { - out += ' validate.errors = null; return true; '; - } - } else { - out += ' var ' + ($valid) + ' = true; '; - } - } - if (it.isTop) { - out += ' }); return validate; '; - } - return out; - } - if (it.isTop) { - var $top = it.isTop, - $lvl = it.level = 0, - $dataLvl = it.dataLevel = 0, - $data = 'data'; - it.rootId = it.resolve.fullPath(it.self._getId(it.root.schema)); - it.baseId = it.baseId || it.rootId; - delete it.isTop; - it.dataPathArr = [undefined]; - out += ' var vErrors = null; '; - out += ' var errors = 0; '; - out += ' if (rootData === undefined) rootData = data; '; - } else { - var $lvl = it.level, - $dataLvl = it.dataLevel, - $data = 'data' + ($dataLvl || ''); - if ($id) it.baseId = it.resolve.url(it.baseId, $id); - if ($async && !it.async) throw new Error('async schema in sync schema'); - out += ' var errs_' + ($lvl) + ' = errors;'; - } - var $valid = 'valid' + $lvl, - $breakOnError = !it.opts.allErrors, - $closingBraces1 = '', - $closingBraces2 = ''; - var $errorKeyword; - var $typeSchema = it.schema.type, - $typeIsArray = Array.isArray($typeSchema); - if ($typeIsArray && $typeSchema.length == 1) { - $typeSchema = $typeSchema[0]; - $typeIsArray = false; - } - if (it.schema.$ref && $refKeywords) { - if (it.opts.extendRefs == 'fail') { - throw new Error('$ref: validation keywords used in schema at path "' + it.errSchemaPath + '" (see option extendRefs)'); - } else if (it.opts.extendRefs !== true) { - $refKeywords = false; - console.warn('$ref: keywords ignored in schema at path "' + it.errSchemaPath + '"'); - } - } - if ($typeSchema) { - if (it.opts.coerceTypes) { - var $coerceToTypes = it.util.coerceToTypes(it.opts.coerceTypes, $typeSchema); - } - var $rulesGroup = it.RULES.types[$typeSchema]; - if ($coerceToTypes || $typeIsArray || $rulesGroup === true || ($rulesGroup && !$shouldUseGroup($rulesGroup))) { - var $schemaPath = it.schemaPath + '.type', - $errSchemaPath = it.errSchemaPath + '/type'; - var $schemaPath = it.schemaPath + '.type', - $errSchemaPath = it.errSchemaPath + '/type', - $method = $typeIsArray ? 'checkDataTypes' : 'checkDataType'; - out += ' if (' + (it.util[$method]($typeSchema, $data, true)) + ') { '; - if ($coerceToTypes) { - var $dataType = 'dataType' + $lvl, - $coerced = 'coerced' + $lvl; - out += ' var ' + ($dataType) + ' = typeof ' + ($data) + '; '; - if (it.opts.coerceTypes == 'array') { - out += ' if (' + ($dataType) + ' == \'object\' && Array.isArray(' + ($data) + ')) ' + ($dataType) + ' = \'array\'; '; - } - out += ' var ' + ($coerced) + ' = undefined; '; - var $bracesCoercion = ''; - var arr1 = $coerceToTypes; - if (arr1) { - var $type, $i = -1, - l1 = arr1.length - 1; - while ($i < l1) { - $type = arr1[$i += 1]; - if ($i) { - out += ' if (' + ($coerced) + ' === undefined) { '; - $bracesCoercion += '}'; - } - if (it.opts.coerceTypes == 'array' && $type != 'array') { - out += ' if (' + ($dataType) + ' == \'array\' && ' + ($data) + '.length == 1) { ' + ($coerced) + ' = ' + ($data) + ' = ' + ($data) + '[0]; ' + ($dataType) + ' = typeof ' + ($data) + '; } '; - } - if ($type == 'string') { - out += ' if (' + ($dataType) + ' == \'number\' || ' + ($dataType) + ' == \'boolean\') ' + ($coerced) + ' = \'\' + ' + ($data) + '; else if (' + ($data) + ' === null) ' + ($coerced) + ' = \'\'; '; - } else if ($type == 'number' || $type == 'integer') { - out += ' if (' + ($dataType) + ' == \'boolean\' || ' + ($data) + ' === null || (' + ($dataType) + ' == \'string\' && ' + ($data) + ' && ' + ($data) + ' == +' + ($data) + ' '; - if ($type == 'integer') { - out += ' && !(' + ($data) + ' % 1)'; - } - out += ')) ' + ($coerced) + ' = +' + ($data) + '; '; - } else if ($type == 'boolean') { - out += ' if (' + ($data) + ' === \'false\' || ' + ($data) + ' === 0 || ' + ($data) + ' === null) ' + ($coerced) + ' = false; else if (' + ($data) + ' === \'true\' || ' + ($data) + ' === 1) ' + ($coerced) + ' = true; '; - } else if ($type == 'null') { - out += ' if (' + ($data) + ' === \'\' || ' + ($data) + ' === 0 || ' + ($data) + ' === false) ' + ($coerced) + ' = null; '; - } else if (it.opts.coerceTypes == 'array' && $type == 'array') { - out += ' if (' + ($dataType) + ' == \'string\' || ' + ($dataType) + ' == \'number\' || ' + ($dataType) + ' == \'boolean\' || ' + ($data) + ' == null) ' + ($coerced) + ' = [' + ($data) + ']; '; - } - } - } - out += ' ' + ($bracesCoercion) + ' if (' + ($coerced) + ' === undefined) { '; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should be '; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } else { '; - var $parentData = $dataLvl ? 'data' + (($dataLvl - 1) || '') : 'parentData', - $parentDataProperty = $dataLvl ? it.dataPathArr[$dataLvl] : 'parentDataProperty'; - out += ' ' + ($data) + ' = ' + ($coerced) + '; '; - if (!$dataLvl) { - out += 'if (' + ($parentData) + ' !== undefined)'; - } - out += ' ' + ($parentData) + '[' + ($parentDataProperty) + '] = ' + ($coerced) + '; } '; - } else { - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should be '; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - } - out += ' } '; - } - } - if (it.schema.$ref && !$refKeywords) { - out += ' ' + (it.RULES.all.$ref.code(it, '$ref')) + ' '; - if ($breakOnError) { - out += ' } if (errors === '; - if ($top) { - out += '0'; - } else { - out += 'errs_' + ($lvl); - } - out += ') { '; - $closingBraces2 += '}'; - } - } else { - if (it.opts.v5 && it.schema.patternGroups) { - console.warn('keyword "patternGroups" is deprecated and disabled. Use option patternGroups: true to enable.'); - } - var arr2 = it.RULES; - if (arr2) { - var $rulesGroup, i2 = -1, - l2 = arr2.length - 1; - while (i2 < l2) { - $rulesGroup = arr2[i2 += 1]; - if ($shouldUseGroup($rulesGroup)) { - if ($rulesGroup.type) { - out += ' if (' + (it.util.checkDataType($rulesGroup.type, $data)) + ') { '; - } - if (it.opts.useDefaults && !it.compositeRule) { - if ($rulesGroup.type == 'object' && it.schema.properties) { - var $schema = it.schema.properties, - $schemaKeys = Object.keys($schema); - var arr3 = $schemaKeys; - if (arr3) { - var $propertyKey, i3 = -1, - l3 = arr3.length - 1; - while (i3 < l3) { - $propertyKey = arr3[i3 += 1]; - var $sch = $schema[$propertyKey]; - if ($sch.default !== undefined) { - var $passData = $data + it.util.getProperty($propertyKey); - out += ' if (' + ($passData) + ' === undefined) ' + ($passData) + ' = '; - if (it.opts.useDefaults == 'shared') { - out += ' ' + (it.useDefault($sch.default)) + ' '; - } else { - out += ' ' + (JSON.stringify($sch.default)) + ' '; - } - out += '; '; - } - } - } - } else if ($rulesGroup.type == 'array' && Array.isArray(it.schema.items)) { - var arr4 = it.schema.items; - if (arr4) { - var $sch, $i = -1, - l4 = arr4.length - 1; - while ($i < l4) { - $sch = arr4[$i += 1]; - if ($sch.default !== undefined) { - var $passData = $data + '[' + $i + ']'; - out += ' if (' + ($passData) + ' === undefined) ' + ($passData) + ' = '; - if (it.opts.useDefaults == 'shared') { - out += ' ' + (it.useDefault($sch.default)) + ' '; - } else { - out += ' ' + (JSON.stringify($sch.default)) + ' '; - } - out += '; '; - } - } - } - } - } - var arr5 = $rulesGroup.rules; - if (arr5) { - var $rule, i5 = -1, - l5 = arr5.length - 1; - while (i5 < l5) { - $rule = arr5[i5 += 1]; - if ($shouldUseRule($rule)) { - var $code = $rule.code(it, $rule.keyword, $rulesGroup.type); - if ($code) { - out += ' ' + ($code) + ' '; - if ($breakOnError) { - $closingBraces1 += '}'; - } - } - } - } - } - if ($breakOnError) { - out += ' ' + ($closingBraces1) + ' '; - $closingBraces1 = ''; - } - if ($rulesGroup.type) { - out += ' } '; - if ($typeSchema && $typeSchema === $rulesGroup.type && !$coerceToTypes) { - out += ' else { '; - var $schemaPath = it.schemaPath + '.type', - $errSchemaPath = it.errSchemaPath + '/type'; - var $$outStack = $$outStack || []; - $$outStack.push(out); - out = ''; /* istanbul ignore else */ - if (it.createErrors !== false) { - out += ' { keyword: \'' + ($errorKeyword || 'type') + '\' , dataPath: (dataPath || \'\') + ' + (it.errorPath) + ' , schemaPath: ' + (it.util.toQuotedString($errSchemaPath)) + ' , params: { type: \''; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' } '; - if (it.opts.messages !== false) { - out += ' , message: \'should be '; - if ($typeIsArray) { - out += '' + ($typeSchema.join(",")); - } else { - out += '' + ($typeSchema); - } - out += '\' '; - } - if (it.opts.verbose) { - out += ' , schema: validate.schema' + ($schemaPath) + ' , parentSchema: validate.schema' + (it.schemaPath) + ' , data: ' + ($data) + ' '; - } - out += ' } '; - } else { - out += ' {} '; - } - var __err = out; - out = $$outStack.pop(); - if (!it.compositeRule && $breakOnError) { /* istanbul ignore if */ - if (it.async) { - out += ' throw new ValidationError([' + (__err) + ']); '; - } else { - out += ' validate.errors = [' + (__err) + ']; return false; '; - } - } else { - out += ' var err = ' + (__err) + '; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; '; - } - out += ' } '; - } - } - if ($breakOnError) { - out += ' if (errors === '; - if ($top) { - out += '0'; - } else { - out += 'errs_' + ($lvl); - } - out += ') { '; - $closingBraces2 += '}'; - } - } - } - } - } - if ($breakOnError) { - out += ' ' + ($closingBraces2) + ' '; - } - if ($top) { - if ($async) { - out += ' if (errors === 0) return data; '; - out += ' else throw new ValidationError(vErrors); '; - } else { - out += ' validate.errors = vErrors; '; - out += ' return errors === 0; '; - } - out += ' }); return validate;'; - } else { - out += ' var ' + ($valid) + ' = errors === errs_' + ($lvl) + ';'; - } - out = it.util.cleanUpCode(out); - if ($top) { - out = it.util.finalCleanUpCode(out, $async); - } - - function $shouldUseGroup($rulesGroup) { - var rules = $rulesGroup.rules; - for (var i = 0; i < rules.length; i++) - if ($shouldUseRule(rules[i])) return true; - } - - function $shouldUseRule($rule) { - return it.schema[$rule.keyword] !== undefined || ($rule.implements && $ruleImlementsSomeKeyword($rule)); - } - - function $ruleImlementsSomeKeyword($rule) { - var impl = $rule.implements; - for (var i = 0; i < impl.length; i++) - if (it.schema[impl[i]] !== undefined) return true; - } - return out; -} - -},{}],36:[function(require,module,exports){ -'use strict'; - -var IDENTIFIER = /^[a-z_$][a-z0-9_$-]*$/i; -var customRuleCode = require('./dotjs/custom'); - -module.exports = { - add: addKeyword, - get: getKeyword, - remove: removeKeyword -}; - -/** - * Define custom keyword - * @this Ajv - * @param {String} keyword custom keyword, should be unique (including different from all standard, custom and macro keywords). - * @param {Object} definition keyword definition object with properties `type` (type(s) which the keyword applies to), `validate` or `compile`. - */ -function addKeyword(keyword, definition) { - /* jshint validthis: true */ - /* eslint no-shadow: 0 */ - var RULES = this.RULES; - - if (RULES.keywords[keyword]) - throw new Error('Keyword ' + keyword + ' is already defined'); - - if (!IDENTIFIER.test(keyword)) - throw new Error('Keyword ' + keyword + ' is not a valid identifier'); - - if (definition) { - if (definition.macro && definition.valid !== undefined) - throw new Error('"valid" option cannot be used with macro keywords'); - - var dataType = definition.type; - if (Array.isArray(dataType)) { - var i, len = dataType.length; - for (i=0; i 2) res = slice.call(arguments, 1); - resolve(res); - }); - }); -} - -/** - * Convert an array of "yieldables" to a promise. - * Uses `Promise.all()` internally. - * - * @param {Array} obj - * @return {Promise} - * @api private - */ - -function arrayToPromise(obj) { - return Promise.all(obj.map(toPromise, this)); -} - -/** - * Convert an object of "yieldables" to a promise. - * Uses `Promise.all()` internally. - * - * @param {Object} obj - * @return {Promise} - * @api private - */ - -function objectToPromise(obj){ - var results = new obj.constructor(); - var keys = Object.keys(obj); - var promises = []; - for (var i = 0; i < keys.length; i++) { - var key = keys[i]; - var promise = toPromise.call(this, obj[key]); - if (promise && isPromise(promise)) defer(promise, key); - else results[key] = obj[key]; - } - return Promise.all(promises).then(function () { - return results; - }); - - function defer(promise, key) { - // predefine the key in the result - results[key] = undefined; - promises.push(promise.then(function (res) { - results[key] = res; - })); - } -} - -/** - * Check if `obj` is a promise. - * - * @param {Object} obj - * @return {Boolean} - * @api private - */ - -function isPromise(obj) { - return 'function' == typeof obj.then; -} - -/** - * Check if `obj` is a generator. - * - * @param {Mixed} obj - * @return {Boolean} - * @api private - */ - -function isGenerator(obj) { - return 'function' == typeof obj.next && 'function' == typeof obj.throw; -} - -/** - * Check if `obj` is a generator function. - * - * @param {Mixed} obj - * @return {Boolean} - * @api private - */ -function isGeneratorFunction(obj) { - var constructor = obj.constructor; - if (!constructor) return false; - if ('GeneratorFunction' === constructor.name || 'GeneratorFunction' === constructor.displayName) return true; - return isGenerator(constructor.prototype); -} - -/** - * Check for plain object. - * - * @param {Mixed} val - * @return {Boolean} - * @api private - */ - -function isObject(val) { - return Object == val.constructor; -} - -},{}],41:[function(require,module,exports){ -'use strict'; - -module.exports = function equal(a, b) { - if (a === b) return true; - - var arrA = Array.isArray(a) - , arrB = Array.isArray(b) - , i; - - if (arrA && arrB) { - if (a.length != b.length) return false; - for (i = 0; i < a.length; i++) - if (!equal(a[i], b[i])) return false; - return true; - } - - if (arrA != arrB) return false; - - if (a && b && typeof a === 'object' && typeof b === 'object') { - var keys = Object.keys(a); - if (keys.length !== Object.keys(b).length) return false; - - var dateA = a instanceof Date - , dateB = b instanceof Date; - if (dateA && dateB) return a.getTime() == b.getTime(); - if (dateA != dateB) return false; - - var regexpA = a instanceof RegExp - , regexpB = b instanceof RegExp; - if (regexpA && regexpB) return a.toString() == b.toString(); - if (regexpA != regexpB) return false; - - for (i = 0; i < keys.length; i++) - if (!Object.prototype.hasOwnProperty.call(b, keys[i])) return false; - - for (i = 0; i < keys.length; i++) - if(!equal(a[keys[i]], b[keys[i]])) return false; - - return true; - } - - return false; -}; - -},{}],42:[function(require,module,exports){ -'use strict'; - -module.exports = function (data, opts) { - if (!opts) opts = {}; - if (typeof opts === 'function') opts = { cmp: opts }; - var cycles = (typeof opts.cycles === 'boolean') ? opts.cycles : false; - - var cmp = opts.cmp && (function (f) { - return function (node) { - return function (a, b) { - var aobj = { key: a, value: node[a] }; - var bobj = { key: b, value: node[b] }; - return f(aobj, bobj); - }; - }; - })(opts.cmp); - - var seen = []; - return (function stringify (node) { - if (node && node.toJSON && typeof node.toJSON === 'function') { - node = node.toJSON(); - } - - if (node === undefined) return; - if (typeof node == 'number') return isFinite(node) ? '' + node : 'null'; - if (typeof node !== 'object') return JSON.stringify(node); - - var i, out; - if (Array.isArray(node)) { - out = '['; - for (i = 0; i < node.length; i++) { - if (i) out += ','; - out += stringify(node[i]) || 'null'; - } - return out + ']'; - } - - if (node === null) return 'null'; - - if (seen.indexOf(node) !== -1) { - if (cycles) return JSON.stringify('__cycle__'); - throw new TypeError('Converting circular structure to JSON'); - } - - var seenIndex = seen.push(node) - 1; - var keys = Object.keys(node).sort(cmp && cmp(node)); - out = ''; - for (i = 0; i < keys.length; i++) { - var key = keys[i]; - var value = stringify(node[key]); - - if (!value) continue; - if (out) out += ','; - out += JSON.stringify(key) + ':' + value; - } - seen.splice(seenIndex, 1); - return '{' + out + '}'; - })(data); -}; - -},{}],43:[function(require,module,exports){ -'use strict'; - -var traverse = module.exports = function (schema, opts, cb) { - if (typeof opts == 'function') { - cb = opts; - opts = {}; - } - _traverse(opts, cb, schema, '', schema); -}; - - -traverse.keywords = { - additionalItems: true, - items: true, - contains: true, - additionalProperties: true, - propertyNames: true, - not: true -}; - -traverse.arrayKeywords = { - items: true, - allOf: true, - anyOf: true, - oneOf: true -}; - -traverse.propsKeywords = { - definitions: true, - properties: true, - patternProperties: true, - dependencies: true -}; - -traverse.skipKeywords = { - enum: true, - const: true, - required: true, - maximum: true, - minimum: true, - exclusiveMaximum: true, - exclusiveMinimum: true, - multipleOf: true, - maxLength: true, - minLength: true, - pattern: true, - format: true, - maxItems: true, - minItems: true, - uniqueItems: true, - maxProperties: true, - minProperties: true -}; - - -function _traverse(opts, cb, schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex) { - if (schema && typeof schema == 'object' && !Array.isArray(schema)) { - cb(schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex); - for (var key in schema) { - var sch = schema[key]; - if (Array.isArray(sch)) { - if (key in traverse.arrayKeywords) { - for (var i=0; i= 0x80 (not a basic code point)', - 'invalid-input': 'Invalid input' - }, - - /** Convenience shortcuts */ - baseMinusTMin = base - tMin, - floor = Math.floor, - stringFromCharCode = String.fromCharCode, - - /** Temporary variable */ - key; - - /*--------------------------------------------------------------------------*/ - - /** - * A generic error utility function. - * @private - * @param {String} type The error type. - * @returns {Error} Throws a `RangeError` with the applicable error message. - */ - function error(type) { - throw new RangeError(errors[type]); - } - - /** - * A generic `Array#map` utility function. - * @private - * @param {Array} array The array to iterate over. - * @param {Function} callback The function that gets called for every array - * item. - * @returns {Array} A new array of values returned by the callback function. - */ - function map(array, fn) { - var length = array.length; - var result = []; - while (length--) { - result[length] = fn(array[length]); - } - return result; - } - - /** - * A simple `Array#map`-like wrapper to work with domain name strings or email - * addresses. - * @private - * @param {String} domain The domain name or email address. - * @param {Function} callback The function that gets called for every - * character. - * @returns {Array} A new string of characters returned by the callback - * function. - */ - function mapDomain(string, fn) { - var parts = string.split('@'); - var result = ''; - if (parts.length > 1) { - // In email addresses, only the domain name should be punycoded. Leave - // the local part (i.e. everything up to `@`) intact. - result = parts[0] + '@'; - string = parts[1]; - } - // Avoid `split(regex)` for IE8 compatibility. See #17. - string = string.replace(regexSeparators, '\x2E'); - var labels = string.split('.'); - var encoded = map(labels, fn).join('.'); - return result + encoded; - } - - /** - * Creates an array containing the numeric code points of each Unicode - * character in the string. While JavaScript uses UCS-2 internally, - * this function will convert a pair of surrogate halves (each of which - * UCS-2 exposes as separate characters) into a single code point, - * matching UTF-16. - * @see `punycode.ucs2.encode` - * @see - * @memberOf punycode.ucs2 - * @name decode - * @param {String} string The Unicode input string (UCS-2). - * @returns {Array} The new array of code points. - */ - function ucs2decode(string) { - var output = [], - counter = 0, - length = string.length, - value, - extra; - while (counter < length) { - value = string.charCodeAt(counter++); - if (value >= 0xD800 && value <= 0xDBFF && counter < length) { - // high surrogate, and there is a next character - extra = string.charCodeAt(counter++); - if ((extra & 0xFC00) == 0xDC00) { // low surrogate - output.push(((value & 0x3FF) << 10) + (extra & 0x3FF) + 0x10000); - } else { - // unmatched surrogate; only append this code unit, in case the next - // code unit is the high surrogate of a surrogate pair - output.push(value); - counter--; - } - } else { - output.push(value); - } - } - return output; - } - - /** - * Creates a string based on an array of numeric code points. - * @see `punycode.ucs2.decode` - * @memberOf punycode.ucs2 - * @name encode - * @param {Array} codePoints The array of numeric code points. - * @returns {String} The new Unicode string (UCS-2). - */ - function ucs2encode(array) { - return map(array, function(value) { - var output = ''; - if (value > 0xFFFF) { - value -= 0x10000; - output += stringFromCharCode(value >>> 10 & 0x3FF | 0xD800); - value = 0xDC00 | value & 0x3FF; - } - output += stringFromCharCode(value); - return output; - }).join(''); - } - - /** - * Converts a basic code point into a digit/integer. - * @see `digitToBasic()` - * @private - * @param {Number} codePoint The basic numeric code point value. - * @returns {Number} The numeric value of a basic code point (for use in - * representing integers) in the range `0` to `base - 1`, or `base` if - * the code point does not represent a value. - */ - function basicToDigit(codePoint) { - if (codePoint - 48 < 10) { - return codePoint - 22; - } - if (codePoint - 65 < 26) { - return codePoint - 65; - } - if (codePoint - 97 < 26) { - return codePoint - 97; - } - return base; - } - - /** - * Converts a digit/integer into a basic code point. - * @see `basicToDigit()` - * @private - * @param {Number} digit The numeric value of a basic code point. - * @returns {Number} The basic code point whose value (when used for - * representing integers) is `digit`, which needs to be in the range - * `0` to `base - 1`. If `flag` is non-zero, the uppercase form is - * used; else, the lowercase form is used. The behavior is undefined - * if `flag` is non-zero and `digit` has no uppercase form. - */ - function digitToBasic(digit, flag) { - // 0..25 map to ASCII a..z or A..Z - // 26..35 map to ASCII 0..9 - return digit + 22 + 75 * (digit < 26) - ((flag != 0) << 5); - } - - /** - * Bias adaptation function as per section 3.4 of RFC 3492. - * https://tools.ietf.org/html/rfc3492#section-3.4 - * @private - */ - function adapt(delta, numPoints, firstTime) { - var k = 0; - delta = firstTime ? floor(delta / damp) : delta >> 1; - delta += floor(delta / numPoints); - for (/* no initialization */; delta > baseMinusTMin * tMax >> 1; k += base) { - delta = floor(delta / baseMinusTMin); - } - return floor(k + (baseMinusTMin + 1) * delta / (delta + skew)); - } - - /** - * Converts a Punycode string of ASCII-only symbols to a string of Unicode - * symbols. - * @memberOf punycode - * @param {String} input The Punycode string of ASCII-only symbols. - * @returns {String} The resulting string of Unicode symbols. - */ - function decode(input) { - // Don't use UCS-2 - var output = [], - inputLength = input.length, - out, - i = 0, - n = initialN, - bias = initialBias, - basic, - j, - index, - oldi, - w, - k, - digit, - t, - /** Cached calculation results */ - baseMinusT; - - // Handle the basic code points: let `basic` be the number of input code - // points before the last delimiter, or `0` if there is none, then copy - // the first basic code points to the output. - - basic = input.lastIndexOf(delimiter); - if (basic < 0) { - basic = 0; - } - - for (j = 0; j < basic; ++j) { - // if it's not a basic code point - if (input.charCodeAt(j) >= 0x80) { - error('not-basic'); - } - output.push(input.charCodeAt(j)); - } - - // Main decoding loop: start just after the last delimiter if any basic code - // points were copied; start at the beginning otherwise. - - for (index = basic > 0 ? basic + 1 : 0; index < inputLength; /* no final expression */) { - - // `index` is the index of the next character to be consumed. - // Decode a generalized variable-length integer into `delta`, - // which gets added to `i`. The overflow checking is easier - // if we increase `i` as we go, then subtract off its starting - // value at the end to obtain `delta`. - for (oldi = i, w = 1, k = base; /* no condition */; k += base) { - - if (index >= inputLength) { - error('invalid-input'); - } - - digit = basicToDigit(input.charCodeAt(index++)); - - if (digit >= base || digit > floor((maxInt - i) / w)) { - error('overflow'); - } - - i += digit * w; - t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); - - if (digit < t) { - break; - } - - baseMinusT = base - t; - if (w > floor(maxInt / baseMinusT)) { - error('overflow'); - } - - w *= baseMinusT; - - } - - out = output.length + 1; - bias = adapt(i - oldi, out, oldi == 0); - - // `i` was supposed to wrap around from `out` to `0`, - // incrementing `n` each time, so we'll fix that now: - if (floor(i / out) > maxInt - n) { - error('overflow'); - } - - n += floor(i / out); - i %= out; - - // Insert `n` at position `i` of the output - output.splice(i++, 0, n); - - } - - return ucs2encode(output); - } - - /** - * Converts a string of Unicode symbols (e.g. a domain name label) to a - * Punycode string of ASCII-only symbols. - * @memberOf punycode - * @param {String} input The string of Unicode symbols. - * @returns {String} The resulting Punycode string of ASCII-only symbols. - */ - function encode(input) { - var n, - delta, - handledCPCount, - basicLength, - bias, - j, - m, - q, - k, - t, - currentValue, - output = [], - /** `inputLength` will hold the number of code points in `input`. */ - inputLength, - /** Cached calculation results */ - handledCPCountPlusOne, - baseMinusT, - qMinusT; - - // Convert the input in UCS-2 to Unicode - input = ucs2decode(input); - - // Cache the length - inputLength = input.length; - - // Initialize the state - n = initialN; - delta = 0; - bias = initialBias; - - // Handle the basic code points - for (j = 0; j < inputLength; ++j) { - currentValue = input[j]; - if (currentValue < 0x80) { - output.push(stringFromCharCode(currentValue)); - } - } - - handledCPCount = basicLength = output.length; - - // `handledCPCount` is the number of code points that have been handled; - // `basicLength` is the number of basic code points. - - // Finish the basic string - if it is not empty - with a delimiter - if (basicLength) { - output.push(delimiter); - } - - // Main encoding loop: - while (handledCPCount < inputLength) { - - // All non-basic code points < n have been handled already. Find the next - // larger one: - for (m = maxInt, j = 0; j < inputLength; ++j) { - currentValue = input[j]; - if (currentValue >= n && currentValue < m) { - m = currentValue; - } - } - - // Increase `delta` enough to advance the decoder's state to , - // but guard against overflow - handledCPCountPlusOne = handledCPCount + 1; - if (m - n > floor((maxInt - delta) / handledCPCountPlusOne)) { - error('overflow'); - } - - delta += (m - n) * handledCPCountPlusOne; - n = m; - - for (j = 0; j < inputLength; ++j) { - currentValue = input[j]; - - if (currentValue < n && ++delta > maxInt) { - error('overflow'); - } - - if (currentValue == n) { - // Represent delta as a generalized variable-length integer - for (q = delta, k = base; /* no condition */; k += base) { - t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); - if (q < t) { - break; - } - qMinusT = q - t; - baseMinusT = base - t; - output.push( - stringFromCharCode(digitToBasic(t + qMinusT % baseMinusT, 0)) - ); - q = floor(qMinusT / baseMinusT); - } - - output.push(stringFromCharCode(digitToBasic(q, 0))); - bias = adapt(delta, handledCPCountPlusOne, handledCPCount == basicLength); - delta = 0; - ++handledCPCount; - } - } - - ++delta; - ++n; - - } - return output.join(''); - } - - /** - * Converts a Punycode string representing a domain name or an email address - * to Unicode. Only the Punycoded parts of the input will be converted, i.e. - * it doesn't matter if you call it on a string that has already been - * converted to Unicode. - * @memberOf punycode - * @param {String} input The Punycoded domain name or email address to - * convert to Unicode. - * @returns {String} The Unicode representation of the given Punycode - * string. - */ - function toUnicode(input) { - return mapDomain(input, function(string) { - return regexPunycode.test(string) - ? decode(string.slice(4).toLowerCase()) - : string; - }); - } - - /** - * Converts a Unicode string representing a domain name or an email address to - * Punycode. Only the non-ASCII parts of the domain name will be converted, - * i.e. it doesn't matter if you call it with a domain that's already in - * ASCII. - * @memberOf punycode - * @param {String} input The domain name or email address to convert, as a - * Unicode string. - * @returns {String} The Punycode representation of the given domain name or - * email address. - */ - function toASCII(input) { - return mapDomain(input, function(string) { - return regexNonASCII.test(string) - ? 'xn--' + encode(string) - : string; - }); - } - - /*--------------------------------------------------------------------------*/ - - /** Define the public API */ - punycode = { - /** - * A string representing the current Punycode.js version number. - * @memberOf punycode - * @type String - */ - 'version': '1.4.1', - /** - * An object of methods to convert from JavaScript's internal character - * representation (UCS-2) to Unicode code points, and back. - * @see - * @memberOf punycode - * @type Object - */ - 'ucs2': { - 'decode': ucs2decode, - 'encode': ucs2encode - }, - 'decode': decode, - 'encode': encode, - 'toASCII': toASCII, - 'toUnicode': toUnicode - }; - - /** Expose `punycode` */ - // Some AMD build optimizers, like r.js, check for specific condition patterns - // like the following: - if ( - typeof define == 'function' && - typeof define.amd == 'object' && - define.amd - ) { - define('punycode', function() { - return punycode; - }); - } else if (freeExports && freeModule) { - if (module.exports == freeExports) { - // in Node.js, io.js, or RingoJS v0.8.0+ - freeModule.exports = punycode; - } else { - // in Narwhal or RingoJS v0.7.0- - for (key in punycode) { - punycode.hasOwnProperty(key) && (freeExports[key] = punycode[key]); - } - } - } else { - // in Rhino or a web browser - root.punycode = punycode; - } - -}(this)); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) -},{}],45:[function(require,module,exports){ -// Copyright Joyent, Inc. and other Node contributors. -// -// Permission is hereby granted, free of charge, to any person obtaining a -// copy of this software and associated documentation files (the -// "Software"), to deal in the Software without restriction, including -// without limitation the rights to use, copy, modify, merge, publish, -// distribute, sublicense, and/or sell copies of the Software, and to permit -// persons to whom the Software is furnished to do so, subject to the -// following conditions: -// -// The above copyright notice and this permission notice shall be included -// in all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS -// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF -// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN -// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, -// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR -// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE -// USE OR OTHER DEALINGS IN THE SOFTWARE. - -'use strict'; - -// If obj.hasOwnProperty has been overridden, then calling -// obj.hasOwnProperty(prop) will break. -// See: https://github.com/joyent/node/issues/1707 -function hasOwnProperty(obj, prop) { - return Object.prototype.hasOwnProperty.call(obj, prop); -} - -module.exports = function(qs, sep, eq, options) { - sep = sep || '&'; - eq = eq || '='; - var obj = {}; - - if (typeof qs !== 'string' || qs.length === 0) { - return obj; - } - - var regexp = /\+/g; - qs = qs.split(sep); - - var maxKeys = 1000; - if (options && typeof options.maxKeys === 'number') { - maxKeys = options.maxKeys; - } - - var len = qs.length; - // maxKeys <= 0 means that we should not limit keys count - if (maxKeys > 0 && len > maxKeys) { - len = maxKeys; - } - - for (var i = 0; i < len; ++i) { - var x = qs[i].replace(regexp, '%20'), - idx = x.indexOf(eq), - kstr, vstr, k, v; - - if (idx >= 0) { - kstr = x.substr(0, idx); - vstr = x.substr(idx + 1); - } else { - kstr = x; - vstr = ''; - } - - k = decodeURIComponent(kstr); - v = decodeURIComponent(vstr); - - if (!hasOwnProperty(obj, k)) { - obj[k] = v; - } else if (isArray(obj[k])) { - obj[k].push(v); - } else { - obj[k] = [obj[k], v]; - } - } - - return obj; -}; - -var isArray = Array.isArray || function (xs) { - return Object.prototype.toString.call(xs) === '[object Array]'; -}; - -},{}],46:[function(require,module,exports){ -// Copyright Joyent, Inc. and other Node contributors. -// -// Permission is hereby granted, free of charge, to any person obtaining a -// copy of this software and associated documentation files (the -// "Software"), to deal in the Software without restriction, including -// without limitation the rights to use, copy, modify, merge, publish, -// distribute, sublicense, and/or sell copies of the Software, and to permit -// persons to whom the Software is furnished to do so, subject to the -// following conditions: -// -// The above copyright notice and this permission notice shall be included -// in all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS -// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF -// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN -// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, -// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR -// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE -// USE OR OTHER DEALINGS IN THE SOFTWARE. - -'use strict'; - -var stringifyPrimitive = function(v) { - switch (typeof v) { - case 'string': - return v; - - case 'boolean': - return v ? 'true' : 'false'; - - case 'number': - return isFinite(v) ? v : ''; - - default: - return ''; - } -}; - -module.exports = function(obj, sep, eq, name) { - sep = sep || '&'; - eq = eq || '='; - if (obj === null) { - obj = undefined; - } - - if (typeof obj === 'object') { - return map(objectKeys(obj), function(k) { - var ks = encodeURIComponent(stringifyPrimitive(k)) + eq; - if (isArray(obj[k])) { - return map(obj[k], function(v) { - return ks + encodeURIComponent(stringifyPrimitive(v)); - }).join(sep); - } else { - return ks + encodeURIComponent(stringifyPrimitive(obj[k])); - } - }).join(sep); - - } - - if (!name) return ''; - return encodeURIComponent(stringifyPrimitive(name)) + eq + - encodeURIComponent(stringifyPrimitive(obj)); -}; - -var isArray = Array.isArray || function (xs) { - return Object.prototype.toString.call(xs) === '[object Array]'; -}; - -function map (xs, f) { - if (xs.map) return xs.map(f); - var res = []; - for (var i = 0; i < xs.length; i++) { - res.push(f(xs[i], i)); - } - return res; -} - -var objectKeys = Object.keys || function (obj) { - var res = []; - for (var key in obj) { - if (Object.prototype.hasOwnProperty.call(obj, key)) res.push(key); - } - return res; -}; - -},{}],47:[function(require,module,exports){ -'use strict'; - -exports.decode = exports.parse = require('./decode'); -exports.encode = exports.stringify = require('./encode'); - -},{"./decode":45,"./encode":46}],48:[function(require,module,exports){ -// Copyright Joyent, Inc. and other Node contributors. -// -// Permission is hereby granted, free of charge, to any person obtaining a -// copy of this software and associated documentation files (the -// "Software"), to deal in the Software without restriction, including -// without limitation the rights to use, copy, modify, merge, publish, -// distribute, sublicense, and/or sell copies of the Software, and to permit -// persons to whom the Software is furnished to do so, subject to the -// following conditions: -// -// The above copyright notice and this permission notice shall be included -// in all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS -// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF -// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN -// NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, -// DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR -// OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE -// USE OR OTHER DEALINGS IN THE SOFTWARE. - -'use strict'; - -var punycode = require('punycode'); -var util = require('./util'); - -exports.parse = urlParse; -exports.resolve = urlResolve; -exports.resolveObject = urlResolveObject; -exports.format = urlFormat; - -exports.Url = Url; - -function Url() { - this.protocol = null; - this.slashes = null; - this.auth = null; - this.host = null; - this.port = null; - this.hostname = null; - this.hash = null; - this.search = null; - this.query = null; - this.pathname = null; - this.path = null; - this.href = null; -} - -// Reference: RFC 3986, RFC 1808, RFC 2396 - -// define these here so at least they only have to be -// compiled once on the first module load. -var protocolPattern = /^([a-z0-9.+-]+:)/i, - portPattern = /:[0-9]*$/, - - // Special case for a simple path URL - simplePathPattern = /^(\/\/?(?!\/)[^\?\s]*)(\?[^\s]*)?$/, - - // RFC 2396: characters reserved for delimiting URLs. - // We actually just auto-escape these. - delims = ['<', '>', '"', '`', ' ', '\r', '\n', '\t'], - - // RFC 2396: characters not allowed for various reasons. - unwise = ['{', '}', '|', '\\', '^', '`'].concat(delims), - - // Allowed by RFCs, but cause of XSS attacks. Always escape these. - autoEscape = ['\''].concat(unwise), - // Characters that are never ever allowed in a hostname. - // Note that any invalid chars are also handled, but these - // are the ones that are *expected* to be seen, so we fast-path - // them. - nonHostChars = ['%', '/', '?', ';', '#'].concat(autoEscape), - hostEndingChars = ['/', '?', '#'], - hostnameMaxLen = 255, - hostnamePartPattern = /^[+a-z0-9A-Z_-]{0,63}$/, - hostnamePartStart = /^([+a-z0-9A-Z_-]{0,63})(.*)$/, - // protocols that can allow "unsafe" and "unwise" chars. - unsafeProtocol = { - 'javascript': true, - 'javascript:': true - }, - // protocols that never have a hostname. - hostlessProtocol = { - 'javascript': true, - 'javascript:': true - }, - // protocols that always contain a // bit. - slashedProtocol = { - 'http': true, - 'https': true, - 'ftp': true, - 'gopher': true, - 'file': true, - 'http:': true, - 'https:': true, - 'ftp:': true, - 'gopher:': true, - 'file:': true - }, - querystring = require('querystring'); - -function urlParse(url, parseQueryString, slashesDenoteHost) { - if (url && util.isObject(url) && url instanceof Url) return url; - - var u = new Url; - u.parse(url, parseQueryString, slashesDenoteHost); - return u; -} - -Url.prototype.parse = function(url, parseQueryString, slashesDenoteHost) { - if (!util.isString(url)) { - throw new TypeError("Parameter 'url' must be a string, not " + typeof url); - } - - // Copy chrome, IE, opera backslash-handling behavior. - // Back slashes before the query string get converted to forward slashes - // See: https://code.google.com/p/chromium/issues/detail?id=25916 - var queryIndex = url.indexOf('?'), - splitter = - (queryIndex !== -1 && queryIndex < url.indexOf('#')) ? '?' : '#', - uSplit = url.split(splitter), - slashRegex = /\\/g; - uSplit[0] = uSplit[0].replace(slashRegex, '/'); - url = uSplit.join(splitter); - - var rest = url; - - // trim before proceeding. - // This is to support parse stuff like " http://foo.com \n" - rest = rest.trim(); - - if (!slashesDenoteHost && url.split('#').length === 1) { - // Try fast path regexp - var simplePath = simplePathPattern.exec(rest); - if (simplePath) { - this.path = rest; - this.href = rest; - this.pathname = simplePath[1]; - if (simplePath[2]) { - this.search = simplePath[2]; - if (parseQueryString) { - this.query = querystring.parse(this.search.substr(1)); - } else { - this.query = this.search.substr(1); - } - } else if (parseQueryString) { - this.search = ''; - this.query = {}; - } - return this; - } - } - - var proto = protocolPattern.exec(rest); - if (proto) { - proto = proto[0]; - var lowerProto = proto.toLowerCase(); - this.protocol = lowerProto; - rest = rest.substr(proto.length); - } - - // figure out if it's got a host - // user@server is *always* interpreted as a hostname, and url - // resolution will treat //foo/bar as host=foo,path=bar because that's - // how the browser resolves relative URLs. - if (slashesDenoteHost || proto || rest.match(/^\/\/[^@\/]+@[^@\/]+/)) { - var slashes = rest.substr(0, 2) === '//'; - if (slashes && !(proto && hostlessProtocol[proto])) { - rest = rest.substr(2); - this.slashes = true; - } - } - - if (!hostlessProtocol[proto] && - (slashes || (proto && !slashedProtocol[proto]))) { - - // there's a hostname. - // the first instance of /, ?, ;, or # ends the host. - // - // If there is an @ in the hostname, then non-host chars *are* allowed - // to the left of the last @ sign, unless some host-ending character - // comes *before* the @-sign. - // URLs are obnoxious. - // - // ex: - // http://a@b@c/ => user:a@b host:c - // http://a@b?@c => user:a host:c path:/?@c - - // v0.12 TODO(isaacs): This is not quite how Chrome does things. - // Review our test case against browsers more comprehensively. - - // find the first instance of any hostEndingChars - var hostEnd = -1; - for (var i = 0; i < hostEndingChars.length; i++) { - var hec = rest.indexOf(hostEndingChars[i]); - if (hec !== -1 && (hostEnd === -1 || hec < hostEnd)) - hostEnd = hec; - } - - // at this point, either we have an explicit point where the - // auth portion cannot go past, or the last @ char is the decider. - var auth, atSign; - if (hostEnd === -1) { - // atSign can be anywhere. - atSign = rest.lastIndexOf('@'); - } else { - // atSign must be in auth portion. - // http://a@b/c@d => host:b auth:a path:/c@d - atSign = rest.lastIndexOf('@', hostEnd); - } - - // Now we have a portion which is definitely the auth. - // Pull that off. - if (atSign !== -1) { - auth = rest.slice(0, atSign); - rest = rest.slice(atSign + 1); - this.auth = decodeURIComponent(auth); - } - - // the host is the remaining to the left of the first non-host char - hostEnd = -1; - for (var i = 0; i < nonHostChars.length; i++) { - var hec = rest.indexOf(nonHostChars[i]); - if (hec !== -1 && (hostEnd === -1 || hec < hostEnd)) - hostEnd = hec; - } - // if we still have not hit it, then the entire thing is a host. - if (hostEnd === -1) - hostEnd = rest.length; - - this.host = rest.slice(0, hostEnd); - rest = rest.slice(hostEnd); - - // pull out port. - this.parseHost(); - - // we've indicated that there is a hostname, - // so even if it's empty, it has to be present. - this.hostname = this.hostname || ''; - - // if hostname begins with [ and ends with ] - // assume that it's an IPv6 address. - var ipv6Hostname = this.hostname[0] === '[' && - this.hostname[this.hostname.length - 1] === ']'; - - // validate a little. - if (!ipv6Hostname) { - var hostparts = this.hostname.split(/\./); - for (var i = 0, l = hostparts.length; i < l; i++) { - var part = hostparts[i]; - if (!part) continue; - if (!part.match(hostnamePartPattern)) { - var newpart = ''; - for (var j = 0, k = part.length; j < k; j++) { - if (part.charCodeAt(j) > 127) { - // we replace non-ASCII char with a temporary placeholder - // we need this to make sure size of hostname is not - // broken by replacing non-ASCII by nothing - newpart += 'x'; - } else { - newpart += part[j]; - } - } - // we test again with ASCII char only - if (!newpart.match(hostnamePartPattern)) { - var validParts = hostparts.slice(0, i); - var notHost = hostparts.slice(i + 1); - var bit = part.match(hostnamePartStart); - if (bit) { - validParts.push(bit[1]); - notHost.unshift(bit[2]); - } - if (notHost.length) { - rest = '/' + notHost.join('.') + rest; - } - this.hostname = validParts.join('.'); - break; - } - } - } - } - - if (this.hostname.length > hostnameMaxLen) { - this.hostname = ''; - } else { - // hostnames are always lower case. - this.hostname = this.hostname.toLowerCase(); - } - - if (!ipv6Hostname) { - // IDNA Support: Returns a punycoded representation of "domain". - // It only converts parts of the domain name that - // have non-ASCII characters, i.e. it doesn't matter if - // you call it with a domain that already is ASCII-only. - this.hostname = punycode.toASCII(this.hostname); - } - - var p = this.port ? ':' + this.port : ''; - var h = this.hostname || ''; - this.host = h + p; - this.href += this.host; - - // strip [ and ] from the hostname - // the host field still retains them, though - if (ipv6Hostname) { - this.hostname = this.hostname.substr(1, this.hostname.length - 2); - if (rest[0] !== '/') { - rest = '/' + rest; - } - } - } - - // now rest is set to the post-host stuff. - // chop off any delim chars. - if (!unsafeProtocol[lowerProto]) { - - // First, make 100% sure that any "autoEscape" chars get - // escaped, even if encodeURIComponent doesn't think they - // need to be. - for (var i = 0, l = autoEscape.length; i < l; i++) { - var ae = autoEscape[i]; - if (rest.indexOf(ae) === -1) - continue; - var esc = encodeURIComponent(ae); - if (esc === ae) { - esc = escape(ae); - } - rest = rest.split(ae).join(esc); - } - } - - - // chop off from the tail first. - var hash = rest.indexOf('#'); - if (hash !== -1) { - // got a fragment string. - this.hash = rest.substr(hash); - rest = rest.slice(0, hash); - } - var qm = rest.indexOf('?'); - if (qm !== -1) { - this.search = rest.substr(qm); - this.query = rest.substr(qm + 1); - if (parseQueryString) { - this.query = querystring.parse(this.query); - } - rest = rest.slice(0, qm); - } else if (parseQueryString) { - // no query string, but parseQueryString still requested - this.search = ''; - this.query = {}; - } - if (rest) this.pathname = rest; - if (slashedProtocol[lowerProto] && - this.hostname && !this.pathname) { - this.pathname = '/'; - } - - //to support http.request - if (this.pathname || this.search) { - var p = this.pathname || ''; - var s = this.search || ''; - this.path = p + s; - } - - // finally, reconstruct the href based on what has been validated. - this.href = this.format(); - return this; -}; - -// format a parsed object into a url string -function urlFormat(obj) { - // ensure it's an object, and not a string url. - // If it's an obj, this is a no-op. - // this way, you can call url_format() on strings - // to clean up potentially wonky urls. - if (util.isString(obj)) obj = urlParse(obj); - if (!(obj instanceof Url)) return Url.prototype.format.call(obj); - return obj.format(); -} - -Url.prototype.format = function() { - var auth = this.auth || ''; - if (auth) { - auth = encodeURIComponent(auth); - auth = auth.replace(/%3A/i, ':'); - auth += '@'; - } - - var protocol = this.protocol || '', - pathname = this.pathname || '', - hash = this.hash || '', - host = false, - query = ''; - - if (this.host) { - host = auth + this.host; - } else if (this.hostname) { - host = auth + (this.hostname.indexOf(':') === -1 ? - this.hostname : - '[' + this.hostname + ']'); - if (this.port) { - host += ':' + this.port; - } - } - - if (this.query && - util.isObject(this.query) && - Object.keys(this.query).length) { - query = querystring.stringify(this.query); - } - - var search = this.search || (query && ('?' + query)) || ''; - - if (protocol && protocol.substr(-1) !== ':') protocol += ':'; - - // only the slashedProtocols get the //. Not mailto:, xmpp:, etc. - // unless they had them to begin with. - if (this.slashes || - (!protocol || slashedProtocol[protocol]) && host !== false) { - host = '//' + (host || ''); - if (pathname && pathname.charAt(0) !== '/') pathname = '/' + pathname; - } else if (!host) { - host = ''; - } - - if (hash && hash.charAt(0) !== '#') hash = '#' + hash; - if (search && search.charAt(0) !== '?') search = '?' + search; - - pathname = pathname.replace(/[?#]/g, function(match) { - return encodeURIComponent(match); - }); - search = search.replace('#', '%23'); - - return protocol + host + pathname + search + hash; -}; - -function urlResolve(source, relative) { - return urlParse(source, false, true).resolve(relative); -} - -Url.prototype.resolve = function(relative) { - return this.resolveObject(urlParse(relative, false, true)).format(); -}; - -function urlResolveObject(source, relative) { - if (!source) return relative; - return urlParse(source, false, true).resolveObject(relative); -} - -Url.prototype.resolveObject = function(relative) { - if (util.isString(relative)) { - var rel = new Url(); - rel.parse(relative, false, true); - relative = rel; - } - - var result = new Url(); - var tkeys = Object.keys(this); - for (var tk = 0; tk < tkeys.length; tk++) { - var tkey = tkeys[tk]; - result[tkey] = this[tkey]; - } - - // hash is always overridden, no matter what. - // even href="" will remove it. - result.hash = relative.hash; - - // if the relative url is empty, then there's nothing left to do here. - if (relative.href === '') { - result.href = result.format(); - return result; - } - - // hrefs like //foo/bar always cut to the protocol. - if (relative.slashes && !relative.protocol) { - // take everything except the protocol from relative - var rkeys = Object.keys(relative); - for (var rk = 0; rk < rkeys.length; rk++) { - var rkey = rkeys[rk]; - if (rkey !== 'protocol') - result[rkey] = relative[rkey]; - } - - //urlParse appends trailing / to urls like http://www.example.com - if (slashedProtocol[result.protocol] && - result.hostname && !result.pathname) { - result.path = result.pathname = '/'; - } - - result.href = result.format(); - return result; - } - - if (relative.protocol && relative.protocol !== result.protocol) { - // if it's a known url protocol, then changing - // the protocol does weird things - // first, if it's not file:, then we MUST have a host, - // and if there was a path - // to begin with, then we MUST have a path. - // if it is file:, then the host is dropped, - // because that's known to be hostless. - // anything else is assumed to be absolute. - if (!slashedProtocol[relative.protocol]) { - var keys = Object.keys(relative); - for (var v = 0; v < keys.length; v++) { - var k = keys[v]; - result[k] = relative[k]; - } - result.href = result.format(); - return result; - } - - result.protocol = relative.protocol; - if (!relative.host && !hostlessProtocol[relative.protocol]) { - var relPath = (relative.pathname || '').split('/'); - while (relPath.length && !(relative.host = relPath.shift())); - if (!relative.host) relative.host = ''; - if (!relative.hostname) relative.hostname = ''; - if (relPath[0] !== '') relPath.unshift(''); - if (relPath.length < 2) relPath.unshift(''); - result.pathname = relPath.join('/'); - } else { - result.pathname = relative.pathname; - } - result.search = relative.search; - result.query = relative.query; - result.host = relative.host || ''; - result.auth = relative.auth; - result.hostname = relative.hostname || relative.host; - result.port = relative.port; - // to support http.request - if (result.pathname || result.search) { - var p = result.pathname || ''; - var s = result.search || ''; - result.path = p + s; - } - result.slashes = result.slashes || relative.slashes; - result.href = result.format(); - return result; - } - - var isSourceAbs = (result.pathname && result.pathname.charAt(0) === '/'), - isRelAbs = ( - relative.host || - relative.pathname && relative.pathname.charAt(0) === '/' - ), - mustEndAbs = (isRelAbs || isSourceAbs || - (result.host && relative.pathname)), - removeAllDots = mustEndAbs, - srcPath = result.pathname && result.pathname.split('/') || [], - relPath = relative.pathname && relative.pathname.split('/') || [], - psychotic = result.protocol && !slashedProtocol[result.protocol]; - - // if the url is a non-slashed url, then relative - // links like ../.. should be able - // to crawl up to the hostname, as well. This is strange. - // result.protocol has already been set by now. - // Later on, put the first path part into the host field. - if (psychotic) { - result.hostname = ''; - result.port = null; - if (result.host) { - if (srcPath[0] === '') srcPath[0] = result.host; - else srcPath.unshift(result.host); - } - result.host = ''; - if (relative.protocol) { - relative.hostname = null; - relative.port = null; - if (relative.host) { - if (relPath[0] === '') relPath[0] = relative.host; - else relPath.unshift(relative.host); - } - relative.host = null; - } - mustEndAbs = mustEndAbs && (relPath[0] === '' || srcPath[0] === ''); - } - - if (isRelAbs) { - // it's absolute. - result.host = (relative.host || relative.host === '') ? - relative.host : result.host; - result.hostname = (relative.hostname || relative.hostname === '') ? - relative.hostname : result.hostname; - result.search = relative.search; - result.query = relative.query; - srcPath = relPath; - // fall through to the dot-handling below. - } else if (relPath.length) { - // it's relative - // throw away the existing file, and take the new path instead. - if (!srcPath) srcPath = []; - srcPath.pop(); - srcPath = srcPath.concat(relPath); - result.search = relative.search; - result.query = relative.query; - } else if (!util.isNullOrUndefined(relative.search)) { - // just pull out the search. - // like href='?foo'. - // Put this after the other two cases because it simplifies the booleans - if (psychotic) { - result.hostname = result.host = srcPath.shift(); - //occationaly the auth can get stuck only in host - //this especially happens in cases like - //url.resolveObject('mailto:local1@domain1', 'local2@domain2') - var authInHost = result.host && result.host.indexOf('@') > 0 ? - result.host.split('@') : false; - if (authInHost) { - result.auth = authInHost.shift(); - result.host = result.hostname = authInHost.shift(); - } - } - result.search = relative.search; - result.query = relative.query; - //to support http.request - if (!util.isNull(result.pathname) || !util.isNull(result.search)) { - result.path = (result.pathname ? result.pathname : '') + - (result.search ? result.search : ''); - } - result.href = result.format(); - return result; - } - - if (!srcPath.length) { - // no path at all. easy. - // we've already handled the other stuff above. - result.pathname = null; - //to support http.request - if (result.search) { - result.path = '/' + result.search; - } else { - result.path = null; - } - result.href = result.format(); - return result; - } - - // if a url ENDs in . or .., then it must get a trailing slash. - // however, if it ends in anything else non-slashy, - // then it must NOT get a trailing slash. - var last = srcPath.slice(-1)[0]; - var hasTrailingSlash = ( - (result.host || relative.host || srcPath.length > 1) && - (last === '.' || last === '..') || last === ''); - - // strip single dots, resolve double dots to parent dir - // if the path tries to go above the root, `up` ends up > 0 - var up = 0; - for (var i = srcPath.length; i >= 0; i--) { - last = srcPath[i]; - if (last === '.') { - srcPath.splice(i, 1); - } else if (last === '..') { - srcPath.splice(i, 1); - up++; - } else if (up) { - srcPath.splice(i, 1); - up--; - } - } - - // if the path is allowed to go above the root, restore leading ..s - if (!mustEndAbs && !removeAllDots) { - for (; up--; up) { - srcPath.unshift('..'); - } - } - - if (mustEndAbs && srcPath[0] !== '' && - (!srcPath[0] || srcPath[0].charAt(0) !== '/')) { - srcPath.unshift(''); - } - - if (hasTrailingSlash && (srcPath.join('/').substr(-1) !== '/')) { - srcPath.push(''); - } - - var isAbsolute = srcPath[0] === '' || - (srcPath[0] && srcPath[0].charAt(0) === '/'); - - // put the host back - if (psychotic) { - result.hostname = result.host = isAbsolute ? '' : - srcPath.length ? srcPath.shift() : ''; - //occationaly the auth can get stuck only in host - //this especially happens in cases like - //url.resolveObject('mailto:local1@domain1', 'local2@domain2') - var authInHost = result.host && result.host.indexOf('@') > 0 ? - result.host.split('@') : false; - if (authInHost) { - result.auth = authInHost.shift(); - result.host = result.hostname = authInHost.shift(); - } - } - - mustEndAbs = mustEndAbs || (result.host && srcPath.length); - - if (mustEndAbs && !isAbsolute) { - srcPath.unshift(''); - } - - if (!srcPath.length) { - result.pathname = null; - result.path = null; - } else { - result.pathname = srcPath.join('/'); - } - - //to support request.http - if (!util.isNull(result.pathname) || !util.isNull(result.search)) { - result.path = (result.pathname ? result.pathname : '') + - (result.search ? result.search : ''); - } - result.auth = relative.auth || result.auth; - result.slashes = result.slashes || relative.slashes; - result.href = result.format(); - return result; -}; - -Url.prototype.parseHost = function() { - var host = this.host; - var port = portPattern.exec(host); - if (port) { - port = port[0]; - if (port !== ':') { - this.port = port.substr(1); - } - host = host.substr(0, host.length - port.length); - } - if (host) this.hostname = host; -}; - -},{"./util":49,"punycode":44,"querystring":47}],49:[function(require,module,exports){ -'use strict'; - -module.exports = { - isString: function(arg) { - return typeof(arg) === 'string'; - }, - isObject: function(arg) { - return typeof(arg) === 'object' && arg !== null; - }, - isNull: function(arg) { - return arg === null; - }, - isNullOrUndefined: function(arg) { - return arg == null; - } -}; - -},{}],"ajv":[function(require,module,exports){ -'use strict'; - -var compileSchema = require('./compile') - , resolve = require('./compile/resolve') - , Cache = require('./cache') - , SchemaObject = require('./compile/schema_obj') - , stableStringify = require('fast-json-stable-stringify') - , formats = require('./compile/formats') - , rules = require('./compile/rules') - , $dataMetaSchema = require('./$data') - , patternGroups = require('./patternGroups') - , util = require('./compile/util') - , co = require('co'); - -module.exports = Ajv; - -Ajv.prototype.validate = validate; -Ajv.prototype.compile = compile; -Ajv.prototype.addSchema = addSchema; -Ajv.prototype.addMetaSchema = addMetaSchema; -Ajv.prototype.validateSchema = validateSchema; -Ajv.prototype.getSchema = getSchema; -Ajv.prototype.removeSchema = removeSchema; -Ajv.prototype.addFormat = addFormat; -Ajv.prototype.errorsText = errorsText; - -Ajv.prototype._addSchema = _addSchema; -Ajv.prototype._compile = _compile; - -Ajv.prototype.compileAsync = require('./compile/async'); -var customKeyword = require('./keyword'); -Ajv.prototype.addKeyword = customKeyword.add; -Ajv.prototype.getKeyword = customKeyword.get; -Ajv.prototype.removeKeyword = customKeyword.remove; - -var errorClasses = require('./compile/error_classes'); -Ajv.ValidationError = errorClasses.Validation; -Ajv.MissingRefError = errorClasses.MissingRef; -Ajv.$dataMetaSchema = $dataMetaSchema; - -var META_SCHEMA_ID = 'http://json-schema.org/draft-06/schema'; - -var META_IGNORE_OPTIONS = [ 'removeAdditional', 'useDefaults', 'coerceTypes' ]; -var META_SUPPORT_DATA = ['/properties']; - -/** - * Creates validator instance. - * Usage: `Ajv(opts)` - * @param {Object} opts optional options - * @return {Object} ajv instance - */ -function Ajv(opts) { - if (!(this instanceof Ajv)) return new Ajv(opts); - opts = this._opts = util.copy(opts) || {}; - this._schemas = {}; - this._refs = {}; - this._fragments = {}; - this._formats = formats(opts.format); - var schemaUriFormat = this._schemaUriFormat = this._formats['uri-reference']; - this._schemaUriFormatFunc = function (str) { return schemaUriFormat.test(str); }; - - this._cache = opts.cache || new Cache; - this._loadingSchemas = {}; - this._compilations = []; - this.RULES = rules(); - this._getId = chooseGetId(opts); - - opts.loopRequired = opts.loopRequired || Infinity; - if (opts.errorDataPath == 'property') opts._errorDataPathProperty = true; - if (opts.serialize === undefined) opts.serialize = stableStringify; - this._metaOpts = getMetaSchemaOptions(this); - - if (opts.formats) addInitialFormats(this); - addDraft6MetaSchema(this); - if (typeof opts.meta == 'object') this.addMetaSchema(opts.meta); - addInitialSchemas(this); - if (opts.patternGroups) patternGroups(this); -} - - - -/** - * Validate data using schema - * Schema will be compiled and cached (using serialized JSON as key. [fast-json-stable-stringify](https://github.com/epoberezkin/fast-json-stable-stringify) is used to serialize. - * @this Ajv - * @param {String|Object} schemaKeyRef key, ref or schema object - * @param {Any} data to be validated - * @return {Boolean} validation result. Errors from the last validation will be available in `ajv.errors` (and also in compiled schema: `schema.errors`). - */ -function validate(schemaKeyRef, data) { - var v; - if (typeof schemaKeyRef == 'string') { - v = this.getSchema(schemaKeyRef); - if (!v) throw new Error('no schema with key or ref "' + schemaKeyRef + '"'); - } else { - var schemaObj = this._addSchema(schemaKeyRef); - v = schemaObj.validate || this._compile(schemaObj); - } - - var valid = v(data); - if (v.$async === true) - return this._opts.async == '*' ? co(valid) : valid; - this.errors = v.errors; - return valid; -} - - -/** - * Create validating function for passed schema. - * @this Ajv - * @param {Object} schema schema object - * @param {Boolean} _meta true if schema is a meta-schema. Used internally to compile meta schemas of custom keywords. - * @return {Function} validating function - */ -function compile(schema, _meta) { - var schemaObj = this._addSchema(schema, undefined, _meta); - return schemaObj.validate || this._compile(schemaObj); -} - - -/** - * Adds schema to the instance. - * @this Ajv - * @param {Object|Array} schema schema or array of schemas. If array is passed, `key` and other parameters will be ignored. - * @param {String} key Optional schema key. Can be passed to `validate` method instead of schema object or id/ref. One schema per instance can have empty `id` and `key`. - * @param {Boolean} _skipValidation true to skip schema validation. Used internally, option validateSchema should be used instead. - * @param {Boolean} _meta true if schema is a meta-schema. Used internally, addMetaSchema should be used instead. - */ -function addSchema(schema, key, _skipValidation, _meta) { - if (Array.isArray(schema)){ - for (var i=0; i} errors optional array of validation errors, if not passed errors from the instance are used. - * @param {Object} options optional options with properties `separator` and `dataVar`. - * @return {String} human readable string with all errors descriptions - */ -function errorsText(errors, options) { - errors = errors || this.errors; - if (!errors) return 'No errors'; - options = options || {}; - var separator = options.separator === undefined ? ', ' : options.separator; - var dataVar = options.dataVar === undefined ? 'data' : options.dataVar; - - var text = ''; - for (var i=0; i=1&&t<=12&&a>=1&&a<=h[t]}function o(e,r){var t=e.match(u);return!!t&&(t[1]<=23&&t[2]<=59&&t[3]<=59&&(!r||t[5]))}function i(e){if(E.test(e))return!1;try{return new RegExp(e),!0}catch(e){return!1}}var 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";var p=e.compositeRule;e.compositeRule=d.compositeRule=!0,d.createErrors=!1;var m;d.opts.allErrors&&(m=d.opts.allErrors,d.opts.allErrors=!1),a+=" "+e.validate(d)+" ",d.createErrors=!0,m&&(d.opts.allErrors=m),e.compositeRule=d.compositeRule=p,a+=" if ("+f+") { ";var v=v||[];v.push(a),a="",!1!==e.createErrors?(a+=" { keyword: 'not' , dataPath: (dataPath || '') + "+e.errorPath+" , schemaPath: "+e.util.toQuotedString(l)+" , params: {} ",!1!==e.opts.messages&&(a+=" , message: 'should NOT be valid' "),e.opts.verbose&&(a+=" , schema: validate.schema"+n+" , parentSchema: validate.schema"+e.schemaPath+" , data: "+u+" "),a+=" } "):a+=" {} ";var y=a;a=v.pop(),a+=!e.compositeRule&&h?e.async?" throw new ValidationError(["+y+"]); ":" validate.errors = ["+y+"]; return false; ":" var err = "+y+"; if (vErrors === null) vErrors = [err]; else vErrors.push(err); errors++; ",a+=" } else { errors = "+c+"; if (vErrors !== null) { if ("+c+") vErrors.length = "+c+"; else vErrors = null; } ",e.opts.allErrors&&(a+=" } ")}else a+=" var err = ",!1!==e.createErrors?(a+=" { keyword: 'not' , dataPath: (dataPath || '') + "+e.errorPath+" , schemaPath: "+e.util.toQuotedString(l)+" , params: {} ",!1!==e.opts.messages&&(a+=" , message: 'should NOT be valid' "),e.opts.verbose&&(a+=" , schema: validate.schema"+n+" , parentSchema: validate.schema"+e.schemaPath+" , data: "+u+" "),a+=" } "):a+=" {} ",a+="; 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this.expectContextual("from"),e.source=this.type===O.string?this.parseExprAtom():this.unexpected(),this.semicolon(),this.finishNode(e,"ExportAllDeclaration");if(this.eat(O._default)){this.checkExport(t,"default",this.lastTokStart);var r;if(this.type===O._function||(r=this.isAsyncFunction())){var i=this.startNode();this.next(),r&&this.next(),e.declaration=this.parseFunction(i,"nullableID",!1,r)}else if(this.type===O._class){var s=this.startNode();e.declaration=this.parseClass(s,"nullableID")}else e.declaration=this.parseMaybeAssign(),this.semicolon();return this.finishNode(e,"ExportDefaultDeclaration")}if(this.shouldParseExportStatement())e.declaration=this.parseStatement(!0),"VariableDeclaration"===e.declaration.type?this.checkVariableExport(t,e.declaration.declarations):this.checkExport(t,e.declaration.id.name,e.declaration.id.start),e.specifiers=[],e.source=null;else{if(e.declaration=null,e.specifiers=this.parseExportSpecifiers(t),this.eatContextual("from"))e.source=this.type===O.string?this.parseExprAtom():this.unexpected();else{for(var o=0,a=e.specifiers;o=6&&e)switch(e.type){case"Identifier":this.inAsync&&"await"===e.name&&this.raise(e.start,"Can not use 'await' as identifier inside an async function");break;case"ObjectPattern":case"ArrayPattern":break;case"ObjectExpression":e.type="ObjectPattern";for(var r=0,i=e.properties;r=6&&(e.computed||e.method||e.shorthand))){var n,r=e.key;switch(r.type){case"Identifier":n=r.name;break;case"Literal":n=String(r.value);break;default:return}var i=e.kind;if(this.options.ecmaVersion>=6)"__proto__"===n&&"init"===i&&(t.proto&&this.raiseRecoverable(r.start,"Redefinition of __proto__ property"),t.proto=!0);else{var s=t[n="$"+n];if(s){("init"===i?this.strict&&s.init||s.get||s.set:s.init||s[i])&&this.raiseRecoverable(r.start,"Redefinition of property")}else s=t[n]={init:!1,get:!1,set:!1};s[i]=!0}}},Z.parseExpression=function(e,t){var n=this,r=this.start,i=this.startLoc,s=this.parseMaybeAssign(e,t);if(this.type===O.comma){var o=this.startNodeAt(r,i);for(o.expressions=[s];this.eat(O.comma);)o.expressions.push(n.parseMaybeAssign(e,t));return this.finishNode(o,"SequenceExpression")}return s},Z.parseMaybeAssign=function(e,t,n){if(this.inGenerator&&this.isContextual("yield"))return this.parseYield();var r=!1,i=-1,s=-1;t?(i=t.parenthesizedAssign,s=t.trailingComma,t.parenthesizedAssign=t.trailingComma=-1):(t=new h,r=!0);var o=this.start,a=this.startLoc;this.type!=O.parenL&&this.type!=O.name||(this.potentialArrowAt=this.start);var u=this.parseMaybeConditional(e,t);if(n&&(u=n.call(this,u,o,a)),this.type.isAssign){this.checkPatternErrors(t,!0),r||h.call(t);var c=this.startNodeAt(o,a);return c.operator=this.value,c.left=this.type===O.eq?this.toAssignable(u):u,t.shorthandAssign=-1,this.checkLVal(u),this.next(),c.right=this.parseMaybeAssign(e),this.finishNode(c,"AssignmentExpression")}return r&&this.checkExpressionErrors(t,!0),i>-1&&(t.parenthesizedAssign=i),s>-1&&(t.trailingComma=s),u},Z.parseMaybeConditional=function(e,t){var n=this.start,r=this.startLoc,i=this.parseExprOps(e,t);if(this.checkExpressionErrors(t))return i;if(this.eat(O.question)){var s=this.startNodeAt(n,r);return s.test=i,s.consequent=this.parseMaybeAssign(),this.expect(O.colon),s.alternate=this.parseMaybeAssign(e),this.finishNode(s,"ConditionalExpression")}return i},Z.parseExprOps=function(e,t){var n=this.start,r=this.startLoc,i=this.parseMaybeUnary(t,!1);return this.checkExpressionErrors(t)?i:i.start==n&&"ArrowFunctionExpression"===i.type?i:this.parseExprOp(i,n,r,-1,e)},Z.parseExprOp=function(e,t,n,r,i){var s=this.type.binop;if(null!=s&&(!i||this.type!==O._in)&&s>r){var o=this.type===O.logicalOR||this.type===O.logicalAND,a=this.value;this.next();var u=this.start,c=this.startLoc,l=this.parseExprOp(this.parseMaybeUnary(null,!1),u,c,s,i),p=this.buildBinary(t,n,e,l,a,o);return this.parseExprOp(p,t,n,r,i)}return e},Z.buildBinary=function(e,t,n,r,i,s){var o=this.startNodeAt(e,t);return o.left=n,o.operator=i,o.right=r,this.finishNode(o,s?"LogicalExpression":"BinaryExpression")},Z.parseMaybeUnary=function(e,t){var n,r=this,i=this.start,s=this.startLoc;if(this.inAsync&&this.isContextual("await"))n=this.parseAwait(e),t=!0;else if(this.type.prefix){var o=this.startNode(),a=this.type===O.incDec;o.operator=this.value,o.prefix=!0,this.next(),o.argument=this.parseMaybeUnary(null,!0),this.checkExpressionErrors(e,!0),a?this.checkLVal(o.argument):this.strict&&"delete"===o.operator&&"Identifier"===o.argument.type?this.raiseRecoverable(o.start,"Deleting local variable in strict mode"):t=!0,n=this.finishNode(o,a?"UpdateExpression":"UnaryExpression")}else{if(n=this.parseExprSubscripts(e),this.checkExpressionErrors(e))return n;for(;this.type.postfix&&!this.canInsertSemicolon();){var u=r.startNodeAt(i,s);u.operator=r.value,u.prefix=!1,u.argument=n,r.checkLVal(n),r.next(),n=r.finishNode(u,"UpdateExpression")}}return!t&&this.eat(O.starstar)?this.buildBinary(i,s,n,this.parseMaybeUnary(null,!1),"**",!1):n},Z.parseExprSubscripts=function(e){var t=this.start,n=this.startLoc,r=this.parseExprAtom(e),i="ArrowFunctionExpression"===r.type&&")"!==this.input.slice(this.lastTokStart,this.lastTokEnd);if(this.checkExpressionErrors(e)||i)return r;var s=this.parseSubscripts(r,t,n);return e&&"MemberExpression"===s.type&&(e.parenthesizedAssign>=s.start&&(e.parenthesizedAssign=-1),e.parenthesizedBind>=s.start&&(e.parenthesizedBind=-1)),s},Z.parseSubscripts=function(e,t,n,r){for(var i=this,s=this.options.ecmaVersion>=8&&"Identifier"===e.type&&"async"===e.name&&this.lastTokEnd==e.end&&!this.canInsertSemicolon(),o=void 0;;)if((o=i.eat(O.bracketL))||i.eat(O.dot)){var a=i.startNodeAt(t,n);a.object=e,a.property=o?i.parseExpression():i.parseIdent(!0),a.computed=!!o,o&&i.expect(O.bracketR),e=i.finishNode(a,"MemberExpression")}else if(!r&&i.eat(O.parenL)){var u=new h,c=i.yieldPos,l=i.awaitPos;i.yieldPos=0,i.awaitPos=0;var p=i.parseExprList(O.parenR,i.options.ecmaVersion>=8,!1,u);if(s&&!i.canInsertSemicolon()&&i.eat(O.arrow))return i.checkPatternErrors(u,!1),i.checkYieldAwaitInDefaultParams(),i.yieldPos=c,i.awaitPos=l,i.parseArrowExpression(i.startNodeAt(t,n),p,!0);i.checkExpressionErrors(u,!0),i.yieldPos=c||i.yieldPos,i.awaitPos=l||i.awaitPos;var f=i.startNodeAt(t,n);f.callee=e,f.arguments=p,e=i.finishNode(f,"CallExpression")}else{if(i.type!==O.backQuote)return e;var d=i.startNodeAt(t,n);d.tag=e,d.quasi=i.parseTemplate({isTagged:!0}),e=i.finishNode(d,"TaggedTemplateExpression")}},Z.parseExprAtom=function(e){var t,n=this.potentialArrowAt==this.start;switch(this.type){case O._super:this.inFunction||this.raise(this.start,"'super' outside of function or class");case O._this:var r=this.type===O._this?"ThisExpression":"Super";return t=this.startNode(),this.next(),this.finishNode(t,r);case O.name:var i=this.start,s=this.startLoc,o=this.parseIdent(this.type!==O.name);if(this.options.ecmaVersion>=8&&"async"===o.name&&!this.canInsertSemicolon()&&this.eat(O._function))return this.parseFunction(this.startNodeAt(i,s),!1,!1,!0);if(n&&!this.canInsertSemicolon()){if(this.eat(O.arrow))return this.parseArrowExpression(this.startNodeAt(i,s),[o],!1);if(this.options.ecmaVersion>=8&&"async"===o.name&&this.type===O.name)return o=this.parseIdent(),!this.canInsertSemicolon()&&this.eat(O.arrow)||this.unexpected(),this.parseArrowExpression(this.startNodeAt(i,s),[o],!0)}return o;case O.regexp:var a=this.value;return t=this.parseLiteral(a.value),t.regex={pattern:a.pattern,flags:a.flags},t;case O.num:case O.string:return this.parseLiteral(this.value);case O._null:case O._true:case O._false:return t=this.startNode(),t.value=this.type===O._null?null:this.type===O._true,t.raw=this.type.keyword,this.next(),this.finishNode(t,"Literal");case O.parenL:var u=this.start,c=this.parseParenAndDistinguishExpression(n);return e&&(e.parenthesizedAssign<0&&!this.isSimpleAssignTarget(c)&&(e.parenthesizedAssign=u),e.parenthesizedBind<0&&(e.parenthesizedBind=u)),c;case O.bracketL:return t=this.startNode(),this.next(),t.elements=this.parseExprList(O.bracketR,!0,!0,e),this.finishNode(t,"ArrayExpression");case O.braceL:return this.parseObj(!1,e);case O._function:return t=this.startNode(),this.next(),this.parseFunction(t,!1);case O._class:return this.parseClass(this.startNode(),!1);case O._new:return this.parseNew();case O.backQuote:return this.parseTemplate();default:this.unexpected()}},Z.parseLiteral=function(e){var t=this.startNode();return t.value=e,t.raw=this.input.slice(this.start,this.end),this.next(),this.finishNode(t,"Literal")},Z.parseParenExpression=function(){this.expect(O.parenL);var e=this.parseExpression();return this.expect(O.parenR),e},Z.parseParenAndDistinguishExpression=function(e){var t,n=this,r=this.start,i=this.startLoc,s=this.options.ecmaVersion>=8;if(this.options.ecmaVersion>=6){this.next();var o,a,u=this.start,c=this.startLoc,l=[],p=!0,f=!1,d=new h,y=this.yieldPos,m=this.awaitPos;for(this.yieldPos=0,this.awaitPos=0;this.type!==O.parenR;){if(p?p=!1:n.expect(O.comma),s&&n.afterTrailingComma(O.parenR,!0)){f=!0;break}if(n.type===O.ellipsis){o=n.start,l.push(n.parseParenItem(n.parseRestBinding())),n.type===O.comma&&n.raise(n.start,"Comma is not permitted after the rest element");break}n.type!==O.parenL||a||(a=n.start),l.push(n.parseMaybeAssign(!1,d,n.parseParenItem))}var g=this.start,v=this.startLoc;if(this.expect(O.parenR),e&&!this.canInsertSemicolon()&&this.eat(O.arrow))return this.checkPatternErrors(d,!1),this.checkYieldAwaitInDefaultParams(),a&&this.unexpected(a),this.yieldPos=y,this.awaitPos=m,this.parseParenArrowList(r,i,l);l.length&&!f||this.unexpected(this.lastTokStart),o&&this.unexpected(o),this.checkExpressionErrors(d,!0),this.yieldPos=y||this.yieldPos,this.awaitPos=m||this.awaitPos,l.length>1?((t=this.startNodeAt(u,c)).expressions=l,this.finishNodeAt(t,"SequenceExpression",g,v)):t=l[0]}else t=this.parseParenExpression();if(this.options.preserveParens){var b=this.startNodeAt(r,i);return b.expression=t,this.finishNode(b,"ParenthesizedExpression")}return t},Z.parseParenItem=function(e){return e},Z.parseParenArrowList=function(e,t,n){return this.parseArrowExpression(this.startNodeAt(e,t),n)};var X=[];Z.parseNew=function(){var e=this.startNode(),t=this.parseIdent(!0);if(this.options.ecmaVersion>=6&&this.eat(O.dot))return e.meta=t,e.property=this.parseIdent(!0),"target"!==e.property.name&&this.raiseRecoverable(e.property.start,"The only valid meta property for new is new.target"),this.inFunction||this.raiseRecoverable(e.start,"new.target can only be used in functions"),this.finishNode(e,"MetaProperty");var n=this.start,r=this.startLoc;return e.callee=this.parseSubscripts(this.parseExprAtom(),n,r,!0),this.eat(O.parenL)?e.arguments=this.parseExprList(O.parenR,this.options.ecmaVersion>=8,!1):e.arguments=X,this.finishNode(e,"NewExpression")},Z.parseTemplateElement=function(e){var t=e.isTagged,n=this.startNode();return this.type===O.invalidTemplate?(t||this.raiseRecoverable(this.start,"Bad escape sequence in untagged template literal"),n.value={raw:this.value,cooked:null}):n.value={raw:this.input.slice(this.start,this.end).replace(/\r\n?/g,"\n"),cooked:this.value},this.next(),n.tail=this.type===O.backQuote,this.finishNode(n,"TemplateElement")},Z.parseTemplate=function(e){var t=this;void 0===e&&(e={});var n=e.isTagged;void 0===n&&(n=!1);var r=this.startNode();this.next(),r.expressions=[];var i=this.parseTemplateElement({isTagged:n});for(r.quasis=[i];!i.tail;)t.expect(O.dollarBraceL),r.expressions.push(t.parseExpression()),t.expect(O.braceR),r.quasis.push(i=t.parseTemplateElement({isTagged:n}));return this.next(),this.finishNode(r,"TemplateLiteral")},Z.isAsyncProp=function(e){return!e.computed&&"Identifier"===e.key.type&&"async"===e.key.name&&(this.type===O.name||this.type===O.num||this.type===O.string||this.type===O.bracketL||this.type.keyword)&&!T.test(this.input.slice(this.lastTokEnd,this.start))},Z.parseObj=function(e,t){var n=this,r=this.startNode(),i=!0,s={};for(r.properties=[],this.next();!this.eat(O.braceR);){if(i)i=!1;else if(n.expect(O.comma),n.afterTrailingComma(O.braceR))break;var o=n.startNode(),a=void 0,u=void 0,c=void 0,l=void 0;n.options.ecmaVersion>=6&&(o.method=!1,o.shorthand=!1,(e||t)&&(c=n.start,l=n.startLoc),e||(a=n.eat(O.star))),n.parsePropertyName(o),!e&&n.options.ecmaVersion>=8&&!a&&n.isAsyncProp(o)?(u=!0,n.parsePropertyName(o,t)):u=!1,n.parsePropertyValue(o,e,a,u,c,l,t),n.checkPropClash(o,s),r.properties.push(n.finishNode(o,"Property"))}return this.finishNode(r,e?"ObjectPattern":"ObjectExpression")},Z.parsePropertyValue=function(e,t,n,r,i,s,o){if((n||r)&&this.type===O.colon&&this.unexpected(),this.eat(O.colon))e.value=t?this.parseMaybeDefault(this.start,this.startLoc):this.parseMaybeAssign(!1,o),e.kind="init";else if(this.options.ecmaVersion>=6&&this.type===O.parenL)t&&this.unexpected(),e.kind="init",e.method=!0,e.value=this.parseMethod(n,r);else if(this.options.ecmaVersion>=5&&!e.computed&&"Identifier"===e.key.type&&("get"===e.key.name||"set"===e.key.name)&&this.type!=O.comma&&this.type!=O.braceR){(n||r||t)&&this.unexpected(),e.kind=e.key.name,this.parsePropertyName(e),e.value=this.parseMethod(!1);var a="get"===e.kind?0:1;if(e.value.params.length!==a){var u=e.value.start;"get"===e.kind?this.raiseRecoverable(u,"getter should have no params"):this.raiseRecoverable(u,"setter should have exactly one param")}else"set"===e.kind&&"RestElement"===e.value.params[0].type&&this.raiseRecoverable(e.value.params[0].start,"Setter cannot use rest params")}else this.options.ecmaVersion>=6&&!e.computed&&"Identifier"===e.key.type?(this.checkUnreserved(e.key),e.kind="init",t?e.value=this.parseMaybeDefault(i,s,e.key):this.type===O.eq&&o?(o.shorthandAssign<0&&(o.shorthandAssign=this.start),e.value=this.parseMaybeDefault(i,s,e.key)):e.value=e.key,e.shorthand=!0):this.unexpected()},Z.parsePropertyName=function(e){if(this.options.ecmaVersion>=6){if(this.eat(O.bracketL))return e.computed=!0,e.key=this.parseMaybeAssign(),this.expect(O.bracketR),e.key;e.computed=!1}return e.key=this.type===O.num||this.type===O.string?this.parseExprAtom():this.parseIdent(!0)},Z.initFunction=function(e){e.id=null,this.options.ecmaVersion>=6&&(e.generator=!1,e.expression=!1),this.options.ecmaVersion>=8&&(e.async=!1)},Z.parseMethod=function(e,t){var n=this.startNode(),r=this.inGenerator,i=this.inAsync,s=this.yieldPos,o=this.awaitPos,a=this.inFunction;return this.initFunction(n),this.options.ecmaVersion>=6&&(n.generator=e),this.options.ecmaVersion>=8&&(n.async=!!t),this.inGenerator=n.generator,this.inAsync=n.async,this.yieldPos=0,this.awaitPos=0,this.inFunction=!0,this.enterFunctionScope(),this.expect(O.parenL),n.params=this.parseBindingList(O.parenR,!1,this.options.ecmaVersion>=8),this.checkYieldAwaitInDefaultParams(),this.parseFunctionBody(n,!1),this.inGenerator=r,this.inAsync=i,this.yieldPos=s,this.awaitPos=o,this.inFunction=a,this.finishNode(n,"FunctionExpression")},Z.parseArrowExpression=function(e,t,n){var r=this.inGenerator,i=this.inAsync,s=this.yieldPos,o=this.awaitPos,a=this.inFunction;return this.enterFunctionScope(),this.initFunction(e),this.options.ecmaVersion>=8&&(e.async=!!n),this.inGenerator=!1,this.inAsync=e.async,this.yieldPos=0,this.awaitPos=0,this.inFunction=!0,e.params=this.toAssignableList(t,!0),this.parseFunctionBody(e,!0),this.inGenerator=r,this.inAsync=i,this.yieldPos=s,this.awaitPos=o,this.inFunction=a,this.finishNode(e,"ArrowFunctionExpression")},Z.parseFunctionBody=function(e,t){var n=t&&this.type!==O.braceL,r=this.strict,i=!1;if(n)e.body=this.parseMaybeAssign(),e.expression=!0,this.checkParams(e,!1);else{var s=this.options.ecmaVersion>=7&&!this.isSimpleParamList(e.params);r&&!s||(i=this.strictDirective(this.end))&&s&&this.raiseRecoverable(e.start,"Illegal 'use strict' directive in function with non-simple parameter list");var o=this.labels;this.labels=[],i&&(this.strict=!0),this.checkParams(e,!r&&!i&&!t&&this.isSimpleParamList(e.params)),e.body=this.parseBlock(!1),e.expression=!1,this.labels=o}this.exitFunctionScope(),this.strict&&e.id&&this.checkLVal(e.id,"none"),this.strict=r},Z.isSimpleParamList=function(e){for(var t=0,n=e;t0;)t[n]=arguments[n+1];for(var r=0,i=t;r=1;t--){var n=e.context[t];if("function"===n.token)return n.generator}return!1},se.updateContext=function(e){var t,n=this.type;n.keyword&&e==O.dot?this.exprAllowed=!1:(t=n.updateContext)?t.call(this,e):this.exprAllowed=n.beforeExpr},O.parenR.updateContext=O.braceR.updateContext=function(){if(1!=this.context.length){var e=this.context.pop();e===ie.b_stat&&"function"===this.curContext().token&&(e=this.context.pop()),this.exprAllowed=!e.isExpr}else this.exprAllowed=!0},O.braceL.updateContext=function(e){this.context.push(this.braceIsBlock(e)?ie.b_stat:ie.b_expr),this.exprAllowed=!0},O.dollarBraceL.updateContext=function(){this.context.push(ie.b_tmpl),this.exprAllowed=!0},O.parenL.updateContext=function(e){var t=e===O._if||e===O._for||e===O._with||e===O._while;this.context.push(t?ie.p_stat:ie.p_expr),this.exprAllowed=!0},O.incDec.updateContext=function(){},O._function.updateContext=O._class.updateContext=function(e){e.beforeExpr&&e!==O.semi&&e!==O._else&&(e!==O.colon&&e!==O.braceL||this.curContext()!==ie.b_stat)?this.context.push(ie.f_expr):this.context.push(ie.f_stat),this.exprAllowed=!1},O.backQuote.updateContext=function(){this.curContext()===ie.q_tmpl?this.context.pop():this.context.push(ie.q_tmpl),this.exprAllowed=!1},O.star.updateContext=function(e){if(e==O._function){var t=this.context.length-1;this.context[t]===ie.f_expr?this.context[t]=ie.f_expr_gen:this.context[t]=ie.f_gen}this.exprAllowed=!0},O.name.updateContext=function(e){var t=!1;this.options.ecmaVersion>=6&&("of"==this.value&&!this.exprAllowed||"yield"==this.value&&this.inGeneratorContext())&&(t=!0),this.exprAllowed=t};var oe=function(e){this.type=e.type,this.value=e.value,this.start=e.start,this.end=e.end,e.options.locations&&(this.loc=new M(e,e.startLoc,e.endLoc)),e.options.ranges&&(this.range=[e.start,e.end])},ae=V.prototype,ue="object"==typeof Packages&&"[object JavaPackage]"==Object.prototype.toString.call(Packages);ae.next=function(){this.options.onToken&&this.options.onToken(new oe(this)),this.lastTokEnd=this.end,this.lastTokStart=this.start,this.lastTokEndLoc=this.endLoc,this.lastTokStartLoc=this.startLoc,this.nextToken()},ae.getToken=function(){return this.next(),new oe(this)},"undefined"!=typeof Symbol&&(ae[Symbol.iterator]=function(){var e=this;return{next:function(){var t=e.getToken();return{done:t.type===O.eof,value:t}}}}),ae.curContext=function(){return this.context[this.context.length-1]},ae.nextToken=function(){var e=this.curContext();return e&&e.preserveSpace||this.skipSpace(),this.start=this.pos,this.options.locations&&(this.startLoc=this.curPosition()),this.pos>=this.input.length?this.finishToken(O.eof):e.override?e.override(this):void this.readToken(this.fullCharCodeAtPos())},ae.readToken=function(e){return n(e,this.options.ecmaVersion>=6)||92===e?this.readWord():this.getTokenFromCode(e)},ae.fullCharCodeAtPos=function(){var e=this.input.charCodeAt(this.pos);return e<=55295||e>=57344?e:(e<<10)+this.input.charCodeAt(this.pos+1)-56613888},ae.skipBlockComment=function(){var e=this,t=this.options.onComment&&this.curPosition(),n=this.pos,r=this.input.indexOf("*/",this.pos+=2);if(-1===r&&this.raise(this.pos-2,"Unterminated comment"),this.pos=r+2,this.options.locations){N.lastIndex=n;for(var i;(i=N.exec(this.input))&&i.index8&&t<14||t>=5760&&P.test(String.fromCharCode(t))))break e;++e.pos}}},ae.finishToken=function(e,t){this.end=this.pos,this.options.locations&&(this.endLoc=this.curPosition());var n=this.type;this.type=e,this.value=t,this.updateContext(n)},ae.readToken_dot=function(){var e=this.input.charCodeAt(this.pos+1);if(e>=48&&e<=57)return this.readNumber(!0);var t=this.input.charCodeAt(this.pos+2);return this.options.ecmaVersion>=6&&46===e&&46===t?(this.pos+=3,this.finishToken(O.ellipsis)):(++this.pos,this.finishToken(O.dot))},ae.readToken_slash=function(){var e=this.input.charCodeAt(this.pos+1);return this.exprAllowed?(++this.pos,this.readRegexp()):61===e?this.finishOp(O.assign,2):this.finishOp(O.slash,1)},ae.readToken_mult_modulo_exp=function(e){var t=this.input.charCodeAt(this.pos+1),n=1,r=42===e?O.star:O.modulo;return this.options.ecmaVersion>=7&&42===t&&(++n,r=O.starstar,t=this.input.charCodeAt(this.pos+2)),61===t?this.finishOp(O.assign,n+1):this.finishOp(r,n)},ae.readToken_pipe_amp=function(e){var t=this.input.charCodeAt(this.pos+1);return t===e?this.finishOp(124===e?O.logicalOR:O.logicalAND,2):61===t?this.finishOp(O.assign,2):this.finishOp(124===e?O.bitwiseOR:O.bitwiseAND,1)},ae.readToken_caret=function(){return 61===this.input.charCodeAt(this.pos+1)?this.finishOp(O.assign,2):this.finishOp(O.bitwiseXOR,1)},ae.readToken_plus_min=function(e){var t=this.input.charCodeAt(this.pos+1);return t===e?45!=t||this.inModule||62!=this.input.charCodeAt(this.pos+2)||0!==this.lastTokEnd&&!T.test(this.input.slice(this.lastTokEnd,this.pos))?this.finishOp(O.incDec,2):(this.skipLineComment(3),this.skipSpace(),this.nextToken()):61===t?this.finishOp(O.assign,2):this.finishOp(O.plusMin,1)},ae.readToken_lt_gt=function(e){var t=this.input.charCodeAt(this.pos+1),n=1;return t===e?(n=62===e&&62===this.input.charCodeAt(this.pos+2)?3:2,61===this.input.charCodeAt(this.pos+n)?this.finishOp(O.assign,n+1):this.finishOp(O.bitShift,n)):33!=t||60!=e||this.inModule||45!=this.input.charCodeAt(this.pos+2)||45!=this.input.charCodeAt(this.pos+3)?(61===t&&(n=2),this.finishOp(O.relational,n)):(this.skipLineComment(4),this.skipSpace(),this.nextToken())},ae.readToken_eq_excl=function(e){var t=this.input.charCodeAt(this.pos+1);return 61===t?this.finishOp(O.equality,61===this.input.charCodeAt(this.pos+2)?3:2):61===e&&62===t&&this.options.ecmaVersion>=6?(this.pos+=2,this.finishToken(O.arrow)):this.finishOp(61===e?O.eq:O.prefix,1)},ae.getTokenFromCode=function(e){switch(e){case 46:return this.readToken_dot();case 40:return++this.pos,this.finishToken(O.parenL);case 41:return++this.pos,this.finishToken(O.parenR);case 59:return++this.pos,this.finishToken(O.semi);case 44:return++this.pos,this.finishToken(O.comma);case 91:return++this.pos,this.finishToken(O.bracketL);case 93:return++this.pos,this.finishToken(O.bracketR);case 123:return++this.pos,this.finishToken(O.braceL);case 125:return++this.pos,this.finishToken(O.braceR);case 58:return++this.pos,this.finishToken(O.colon);case 63:return++this.pos,this.finishToken(O.question);case 96:if(this.options.ecmaVersion<6)break;return++this.pos,this.finishToken(O.backQuote);case 48:var t=this.input.charCodeAt(this.pos+1);if(120===t||88===t)return this.readRadixNumber(16);if(this.options.ecmaVersion>=6){if(111===t||79===t)return this.readRadixNumber(8);if(98===t||66===t)return this.readRadixNumber(2)}case 49:case 50:case 51:case 52:case 53:case 54:case 55:case 56:case 57:return this.readNumber(!1);case 34:case 39:return this.readString(e);case 47:return this.readToken_slash();case 37:case 42:return this.readToken_mult_modulo_exp(e);case 124:case 38:return this.readToken_pipe_amp(e);case 94:return this.readToken_caret();case 43:case 45:return this.readToken_plus_min(e);case 60:case 62:return this.readToken_lt_gt(e);case 61:case 33:return this.readToken_eq_excl(e);case 126:return this.finishOp(O.prefix,1)}this.raise(this.pos,"Unexpected character '"+y(e)+"'")},ae.finishOp=function(e,t){var n=this.input.slice(this.pos,this.pos+t);return this.pos+=t,this.finishToken(e,n)};var ce=!!d("￿","u");ae.readRegexp=function(){for(var e,t,n=this,r=this.pos;;){n.pos>=n.input.length&&n.raise(r,"Unterminated regular expression");var i=n.input.charAt(n.pos);if(T.test(i)&&n.raise(r,"Unterminated regular expression"),e)e=!1;else{if("["===i)t=!0;else if("]"===i&&t)t=!1;else if("/"===i&&!t)break;e="\\"===i}++n.pos}var s=this.input.slice(r,this.pos);++this.pos;var o=this.readWord1(),a=s,u="";if(o){var c=/^[gim]*$/;this.options.ecmaVersion>=6&&(c=/^[gimuy]*$/),c.test(o)||this.raise(r,"Invalid regular expression flag"),o.indexOf("u")>=0&&(ce?u="u":(a=(a=a.replace(/\\u\{([0-9a-fA-F]+)\}/g,function(e,t,i){return(t=Number("0x"+t))>1114111&&n.raise(r+i+3,"Code point out of bounds"),"x"})).replace(/\\u([a-fA-F0-9]{4})|[\uD800-\uDBFF][\uDC00-\uDFFF]/g,"x"),u=u.replace("u","")))}var l=null;return ue||(d(a,u,r,this),l=d(s,o)),this.finishToken(O.regexp,{pattern:s,flags:o,value:l})},ae.readInt=function(e,t){for(var n=this,r=this.pos,i=0,s=0,o=null==t?1/0:t;s=97?a-97+10:a>=65?a-65+10:a>=48&&a<=57?a-48:1/0)>=e)break;++n.pos,i=i*e+u}return this.pos===r||null!=t&&this.pos-r!==t?null:i},ae.readRadixNumber=function(e){this.pos+=2;var t=this.readInt(e);return null==t&&this.raise(this.start+2,"Expected number in radix "+e),n(this.fullCharCodeAtPos())&&this.raise(this.pos,"Identifier directly after number"),this.finishToken(O.num,t)},ae.readNumber=function(e){var t=this.pos,r=!1,i=48===this.input.charCodeAt(this.pos);e||null!==this.readInt(10)||this.raise(t,"Invalid number"),i&&this.pos==t+1&&(i=!1);var s=this.input.charCodeAt(this.pos);46!==s||i||(++this.pos,this.readInt(10),r=!0,s=this.input.charCodeAt(this.pos)),69!==s&&101!==s||i||(43!==(s=this.input.charCodeAt(++this.pos))&&45!==s||++this.pos,null===this.readInt(10)&&this.raise(t,"Invalid number"),r=!0),n(this.fullCharCodeAtPos())&&this.raise(this.pos,"Identifier directly after number");var o,a=this.input.slice(t,this.pos);return r?o=parseFloat(a):i&&1!==a.length?this.strict?this.raise(t,"Invalid number"):o=/[89]/.test(a)?parseInt(a,10):parseInt(a,8):o=parseInt(a,10),this.finishToken(O.num,o)},ae.readCodePoint=function(){var e;if(123===this.input.charCodeAt(this.pos)){this.options.ecmaVersion<6&&this.unexpected();var t=++this.pos;e=this.readHexChar(this.input.indexOf("}",this.pos)-this.pos),++this.pos,e>1114111&&this.invalidStringToken(t,"Code point out of bounds")}else e=this.readHexChar(4);return e},ae.readString=function(e){for(var t=this,n="",r=++this.pos;;){t.pos>=t.input.length&&t.raise(t.start,"Unterminated string 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e.pos!==e.start||e.type!==O.template&&e.type!==O.invalidTemplate?(t+=e.input.slice(n,e.pos),e.finishToken(O.template,t)):36===r?(e.pos+=2,e.finishToken(O.dollarBraceL)):(++e.pos,e.finishToken(O.backQuote));if(92===r)t+=e.input.slice(n,e.pos),t+=e.readEscapedChar(!0),n=e.pos;else if(o(r)){switch(t+=e.input.slice(n,e.pos),++e.pos,r){case 13:10===e.input.charCodeAt(e.pos)&&++e.pos;case 10:t+="\n";break;default:t+=String.fromCharCode(r)}e.options.locations&&(++e.curLine,e.lineStart=e.pos),n=e.pos}else++e.pos}},ae.readInvalidTemplateToken=function(){for(var e=this;this.pos=48&&t<=55){var n=this.input.substr(this.pos-1,3).match(/^[0-7]+/)[0],r=parseInt(n,8);return r>255&&(n=n.slice(0,-1),r=parseInt(n,8)),"0"!==n&&(this.strict||e)&&this.invalidStringToken(this.pos-2,"Octal literal in strict mode"),this.pos+=n.length-1,String.fromCharCode(r)}return String.fromCharCode(t)}},ae.readHexChar=function(e){var t=this.pos,n=this.readInt(16,e);return null===n&&this.invalidStringToken(t,"Bad character 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r=e[t];e[t]=e[n],e[n]=r}function g(e,t,n,r,s){if(0===e.length)return-1;if("string"==typeof n?(r=n,n=0):n>2147483647?n=2147483647:n<-2147483648&&(n=-2147483648),n=+n,G(n)&&(n=s?0:e.length-1),n<0&&(n=e.length+n),n>=e.length){if(s)return-1;n=e.length-1}else if(n<0){if(!s)return-1;n=0}if("string"==typeof t&&(t=i.from(t,r)),i.isBuffer(t))return 0===t.length?-1:v(e,t,n,r,s);if("number"==typeof t)return t&=255,"function"==typeof Uint8Array.prototype.indexOf?s?Uint8Array.prototype.indexOf.call(e,t,n):Uint8Array.prototype.lastIndexOf.call(e,t,n):v(e,[t],n,r,s);throw new TypeError("val must be string, number or Buffer")}function v(e,t,n,r,i){function s(e,t){return 1===o?e[t]:e.readUInt16BE(t*o)}var o=1,a=e.length,u=t.length;if(void 0!==r&&("ucs2"===(r=String(r).toLowerCase())||"ucs-2"===r||"utf16le"===r||"utf-16le"===r)){if(e.length<2||t.length<2)return-1;o=2,a/=2,u/=2,n/=2}var c;if(i){var l=-1;for(c=n;ca&&(n=a-u),c=n;c>=0;c--){for(var p=!0,h=0;hi&&(r=i):r=i;var s=t.length;if(s%2!=0)throw new 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q(this.state)),this.state.lastTokEnd=this.state.end,this.state.lastTokStart=this.state.start,this.state.lastTokEndLoc=this.state.endLoc,this.state.lastTokStartLoc=this.state.startLoc,this.nextToken()},e.prototype.eat=function(e){return!!this.match(e)&&(this.next(),!0)},e.prototype.match=function(e){return this.state.type===e},e.prototype.isKeyword=function(e){return y(e)},e.prototype.lookahead=function(){var e=this.state;this.state=e.clone(!0),this.isLookahead=!0,this.next(),this.isLookahead=!1;var t=this.state.clone(!0);return this.state=e,t},e.prototype.setStrict=function(e){if(this.state.strict=e,this.match(B.num)||this.match(B.string)){for(this.state.pos=this.state.start;this.state.pos=this.input.length?this.finishToken(B.eof):e.override?e.override(this):this.readToken(this.fullCharCodeAtPos())},e.prototype.readToken=function(e){return s(e)||92===e?this.readWord():this.getTokenFromCode(e)},e.prototype.fullCharCodeAtPos=function(){var e=this.input.charCodeAt(this.state.pos);return e<=55295||e>=57344?e:(e<<10)+this.input.charCodeAt(this.state.pos+1)-56613888},e.prototype.pushComment=function(e,t,r,n,i,s){var a={type:e?"CommentBlock":"CommentLine",value:t,start:r,end:n,loc:new V(i,s)};this.isLookahead||(this.state.tokens.push(a),this.state.comments.push(a),this.addComment(a))},e.prototype.skipBlockComment=function(){var e=this.state.curPosition(),t=this.state.pos,r=this.input.indexOf("*/",this.state.pos+=2);-1===r&&this.raise(this.state.pos-2,"Unterminated comment"),this.state.pos=r+2,N.lastIndex=t;for(var n=void 0;(n=N.exec(this.input))&&n.index8&&e<14||e>=5760&&I.test(String.fromCharCode(e))))break e;++this.state.pos}}},e.prototype.finishToken=function(e,t){this.state.end=this.state.pos,this.state.endLoc=this.state.curPosition();var r=this.state.type;this.state.type=e,this.state.value=t,this.updateContext(r)},e.prototype.readToken_dot=function(){var e=this.input.charCodeAt(this.state.pos+1);if(e>=48&&e<=57)return this.readNumber(!0);var t=this.input.charCodeAt(this.state.pos+2);return 46===e&&46===t?(this.state.pos+=3,this.finishToken(B.ellipsis)):(++this.state.pos,this.finishToken(B.dot))},e.prototype.readToken_slash=function(){return this.state.exprAllowed?(++this.state.pos,this.readRegexp()):61===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.assign,2):this.finishOp(B.slash,1)},e.prototype.readToken_mult_modulo=function(e){var t=42===e?B.star:B.modulo,r=1,n=this.input.charCodeAt(this.state.pos+1);return 42===n&&(r++,n=this.input.charCodeAt(this.state.pos+2),t=B.exponent),61===n&&(r++,t=B.assign),this.finishOp(t,r)},e.prototype.readToken_pipe_amp=function(e){var t=this.input.charCodeAt(this.state.pos+1);return t===e?this.finishOp(124===e?B.logicalOR:B.logicalAND,2):61===t?this.finishOp(B.assign,2):124===e&&125===t&&this.hasPlugin("flow")?this.finishOp(B.braceBarR,2):this.finishOp(124===e?B.bitwiseOR:B.bitwiseAND,1)},e.prototype.readToken_caret=function(){return 61===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.assign,2):this.finishOp(B.bitwiseXOR,1)},e.prototype.readToken_plus_min=function(e){var t=this.input.charCodeAt(this.state.pos+1);return t===e?45===t&&62===this.input.charCodeAt(this.state.pos+2)&&j.test(this.input.slice(this.state.lastTokEnd,this.state.pos))?(this.skipLineComment(3),this.skipSpace(),this.nextToken()):this.finishOp(B.incDec,2):61===t?this.finishOp(B.assign,2):this.finishOp(B.plusMin,1)},e.prototype.readToken_lt_gt=function(e){var t=this.input.charCodeAt(this.state.pos+1),r=1;return t===e?(r=62===e&&62===this.input.charCodeAt(this.state.pos+2)?3:2,61===this.input.charCodeAt(this.state.pos+r)?this.finishOp(B.assign,r+1):this.finishOp(B.bitShift,r)):33===t&&60===e&&45===this.input.charCodeAt(this.state.pos+2)&&45===this.input.charCodeAt(this.state.pos+3)?(this.inModule&&this.unexpected(),this.skipLineComment(4),this.skipSpace(),this.nextToken()):(61===t&&(r=2),this.finishOp(B.relational,r))},e.prototype.readToken_eq_excl=function(e){var t=this.input.charCodeAt(this.state.pos+1);return 61===t?this.finishOp(B.equality,61===this.input.charCodeAt(this.state.pos+2)?3:2):61===e&&62===t?(this.state.pos+=2,this.finishToken(B.arrow)):this.finishOp(61===e?B.eq:B.prefix,1)},e.prototype.getTokenFromCode=function(e){switch(e){case 46:return this.readToken_dot();case 40:return++this.state.pos,this.finishToken(B.parenL);case 41:return++this.state.pos,this.finishToken(B.parenR);case 59:return++this.state.pos,this.finishToken(B.semi);case 44:return++this.state.pos,this.finishToken(B.comma);case 91:return++this.state.pos,this.finishToken(B.bracketL);case 93:return++this.state.pos,this.finishToken(B.bracketR);case 123:return this.hasPlugin("flow")&&124===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.braceBarL,2):(++this.state.pos,this.finishToken(B.braceL));case 125:return++this.state.pos,this.finishToken(B.braceR);case 58:return this.hasPlugin("functionBind")&&58===this.input.charCodeAt(this.state.pos+1)?this.finishOp(B.doubleColon,2):(++this.state.pos,this.finishToken(B.colon));case 63:return++this.state.pos,this.finishToken(B.question);case 64:return++this.state.pos,this.finishToken(B.at);case 96:return++this.state.pos,this.finishToken(B.backQuote);case 48:var t=this.input.charCodeAt(this.state.pos+1);if(120===t||88===t)return this.readRadixNumber(16);if(111===t||79===t)return this.readRadixNumber(8);if(98===t||66===t)return this.readRadixNumber(2);case 49:case 50:case 51:case 52:case 53:case 54:case 55:case 56:case 57:return this.readNumber(!1);case 34:case 39:return this.readString(e);case 47:return this.readToken_slash();case 37:case 42:return this.readToken_mult_modulo(e);case 124:case 38:return this.readToken_pipe_amp(e);case 94:return this.readToken_caret();case 43:case 45:return this.readToken_plus_min(e);case 60:case 62:return this.readToken_lt_gt(e);case 61:case 33:return this.readToken_eq_excl(e);case 126:return this.finishOp(B.prefix,1)}this.raise(this.state.pos,"Unexpected character '"+c(e)+"'")},e.prototype.finishOp=function(e,t){var r=this.input.slice(this.state.pos,this.state.pos+t);return this.state.pos+=t,this.finishToken(e,r)},e.prototype.readRegexp=function(){for(var e=this.state.pos,t=void 0,r=void 0;;){this.state.pos>=this.input.length&&this.raise(e,"Unterminated regular expression");var n=this.input.charAt(this.state.pos);if(j.test(n)&&this.raise(e,"Unterminated regular expression"),t)t=!1;else{if("["===n)r=!0;else if("]"===n&&r)r=!1;else if("/"===n&&!r)break;t="\\"===n}++this.state.pos}var i=this.input.slice(e,this.state.pos);++this.state.pos;var s=this.readWord1();if(s){/^[gmsiyu]*$/.test(s)||this.raise(e,"Invalid regular expression flag")}return this.finishToken(B.regexp,{pattern:i,flags:s})},e.prototype.readInt=function(e,t){for(var r=this.state.pos,n=0,i=0,s=null==t?1/0:t;i=97?a-97+10:a>=65?a-65+10:a>=48&&a<=57?a-48:1/0)>=e)break;++this.state.pos,n=n*e+o}return this.state.pos===r||null!=t&&this.state.pos-r!==t?null:n},e.prototype.readRadixNumber=function(e){this.state.pos+=2;var t=this.readInt(e);return null==t&&this.raise(this.state.start+2,"Expected number in radix "+e),s(this.fullCharCodeAtPos())&&this.raise(this.state.pos,"Identifier directly after number"),this.finishToken(B.num,t)},e.prototype.readNumber=function(e){var t=this.state.pos,r=48===this.input.charCodeAt(t),n=!1;e||null!==this.readInt(10)||this.raise(t,"Invalid number"),r&&this.state.pos==t+1&&(r=!1);var i=this.input.charCodeAt(this.state.pos);46!==i||r||(++this.state.pos,this.readInt(10),n=!0,i=this.input.charCodeAt(this.state.pos)),69!==i&&101!==i||r||(43!==(i=this.input.charCodeAt(++this.state.pos))&&45!==i||++this.state.pos,null===this.readInt(10)&&this.raise(t,"Invalid number"),n=!0),s(this.fullCharCodeAtPos())&&this.raise(this.state.pos,"Identifier directly after number");var a=this.input.slice(t,this.state.pos),o=void 0;return n?o=parseFloat(a):r&&1!==a.length?this.state.strict?this.raise(t,"Invalid number"):o=/[89]/.test(a)?parseInt(a,10):parseInt(a,8):o=parseInt(a,10),this.finishToken(B.num,o)},e.prototype.readCodePoint=function(e){var t=void 0;if(123===this.input.charCodeAt(this.state.pos)){var r=++this.state.pos;if(t=this.readHexChar(this.input.indexOf("}",this.state.pos)-this.state.pos,e),++this.state.pos,null===t)--this.state.invalidTemplateEscapePosition;else if(t>1114111){if(!e)return this.state.invalidTemplateEscapePosition=r-2,null;this.raise(r,"Code point out of bounds")}}else t=this.readHexChar(4,e);return t},e.prototype.readString=function(e){for(var t="",r=++this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated string constant");var n=this.input.charCodeAt(this.state.pos);if(n===e)break;92===n?(t+=this.input.slice(r,this.state.pos),t+=this.readEscapedChar(!1),r=this.state.pos):(u(n)&&this.raise(this.state.start,"Unterminated string constant"),++this.state.pos)}return t+=this.input.slice(r,this.state.pos++),this.finishToken(B.string,t)},e.prototype.readTmplToken=function(){for(var e="",t=this.state.pos,r=!1;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated template");var n=this.input.charCodeAt(this.state.pos);if(96===n||36===n&&123===this.input.charCodeAt(this.state.pos+1))return this.state.pos===this.state.start&&this.match(B.template)?36===n?(this.state.pos+=2,this.finishToken(B.dollarBraceL)):(++this.state.pos,this.finishToken(B.backQuote)):(e+=this.input.slice(t,this.state.pos),this.finishToken(B.template,r?null:e));if(92===n){e+=this.input.slice(t,this.state.pos);var i=this.readEscapedChar(!0);null===i?r=!0:e+=i,t=this.state.pos}else if(u(n)){switch(e+=this.input.slice(t,this.state.pos),++this.state.pos,n){case 13:10===this.input.charCodeAt(this.state.pos)&&++this.state.pos;case 10:e+="\n";break;default:e+=String.fromCharCode(n)}++this.state.curLine,this.state.lineStart=this.state.pos,t=this.state.pos}else++this.state.pos}},e.prototype.readEscapedChar=function(e){var t=!e,r=this.input.charCodeAt(++this.state.pos);switch(++this.state.pos,r){case 110:return"\n";case 114:return"\r";case 120:var n=this.readHexChar(2,t);return null===n?null:String.fromCharCode(n);case 117:var i=this.readCodePoint(t);return null===i?null:c(i);case 116:return"\t";case 98:return"\b";case 118:return"\v";case 102:return"\f";case 13:10===this.input.charCodeAt(this.state.pos)&&++this.state.pos;case 10:return this.state.lineStart=this.state.pos,++this.state.curLine,"";default:if(r>=48&&r<=55){var s=this.state.pos-1,a=this.input.substr(this.state.pos-1,3).match(/^[0-7]+/)[0],o=parseInt(a,8);if(o>255&&(a=a.slice(0,-1),o=parseInt(a,8)),o>0){if(e)return this.state.invalidTemplateEscapePosition=s,null;this.state.strict?this.raise(s,"Octal literal in strict mode"):this.state.containsOctal||(this.state.containsOctal=!0,this.state.octalPosition=s)}return this.state.pos+=a.length-1,String.fromCharCode(o)}return String.fromCharCode(r)}},e.prototype.readHexChar=function(e,t){var r=this.state.pos,n=this.readInt(16,e);return null===n&&(t?this.raise(r,"Bad character escape sequence"):(this.state.pos=r-1,this.state.invalidTemplateEscapePosition=r-1)),n},e.prototype.readWord1=function(){this.state.containsEsc=!1;for(var e="",t=!0,r=this.state.pos;this.state.pos1&&void 0!==arguments[1]?arguments[1]:"Unexpected token";t&&"object"===(void 0===t?"undefined":C(t))&&t.label&&(t="Unexpected token, expected "+t.label),this.raise(null!=e?e:this.state.start,t)};var K=W.prototype;K.parseTopLevel=function(e,t){return t.sourceType=this.options.sourceType,this.parseBlockBody(t,!0,!0,B.eof),e.program=this.finishNode(t,"Program"),e.comments=this.state.comments,e.tokens=this.state.tokens,this.finishNode(e,"File")};var z={kind:"loop"},Y={kind:"switch"};K.stmtToDirective=function(e){var t=e.expression,r=this.startNodeAt(t.start,t.loc.start),n=this.startNodeAt(e.start,e.loc.start),i=this.input.slice(t.start,t.end),s=r.value=i.slice(1,-1);return this.addExtra(r,"raw",i),this.addExtra(r,"rawValue",s),n.value=this.finishNodeAt(r,"DirectiveLiteral",t.end,t.loc.end),this.finishNodeAt(n,"Directive",e.end,e.loc.end)},K.parseStatement=function(e,t){this.match(B.at)&&this.parseDecorators(!0);var r=this.state.type,n=this.startNode();switch(r){case B._break:case B._continue:return this.parseBreakContinueStatement(n,r.keyword);case B._debugger:return this.parseDebuggerStatement(n);case B._do:return this.parseDoStatement(n);case B._for:return this.parseForStatement(n);case B._function:return e||this.unexpected(),this.parseFunctionStatement(n);case B._class:return e||this.unexpected(),this.parseClass(n,!0);case B._if:return this.parseIfStatement(n);case B._return:return this.parseReturnStatement(n);case B._switch:return this.parseSwitchStatement(n);case B._throw:return this.parseThrowStatement(n);case B._try:return this.parseTryStatement(n);case B._let:case B._const:e||this.unexpected();case B._var:return this.parseVarStatement(n,r);case B._while:return this.parseWhileStatement(n);case B._with:return this.parseWithStatement(n);case B.braceL:return this.parseBlock();case B.semi:return this.parseEmptyStatement(n);case B._export:case B._import:if(this.hasPlugin("dynamicImport")&&this.lookahead().type===B.parenL)break;return this.options.allowImportExportEverywhere||(t||this.raise(this.state.start,"'import' and 'export' may only appear at the top level"),this.inModule||this.raise(this.state.start,"'import' and 'export' may appear only with 'sourceType: \"module\"'")),r===B._import?this.parseImport(n):this.parseExport(n);case B.name:if("async"===this.state.value){var i=this.state.clone();if(this.next(),this.match(B._function)&&!this.canInsertSemicolon())return this.expect(B._function),this.parseFunction(n,!0,!1,!0);this.state=i}}var s=this.state.value,a=this.parseExpression();return r===B.name&&"Identifier"===a.type&&this.eat(B.colon)?this.parseLabeledStatement(n,s,a):this.parseExpressionStatement(n,a)},K.takeDecorators=function(e){this.state.decorators.length&&(e.decorators=this.state.decorators,this.state.decorators=[])},K.parseDecorators=function(e){for(;this.match(B.at);){var t=this.parseDecorator();this.state.decorators.push(t)}e&&this.match(B._export)||this.match(B._class)||this.raise(this.state.start,"Leading decorators must be attached to a class declaration")},K.parseDecorator=function(){this.hasPlugin("decorators")||this.unexpected();var e=this.startNode();return this.next(),e.expression=this.parseMaybeAssign(),this.finishNode(e,"Decorator")},K.parseBreakContinueStatement=function(e,t){var r="break"===t;this.next(),this.isLineTerminator()?e.label=null:this.match(B.name)?(e.label=this.parseIdentifier(),this.semicolon()):this.unexpected();var n=void 0;for(n=0;n=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}a.name===t&&this.raise(r.start,"Label '"+t+"' is already declared")}for(var o=this.state.type.isLoop?"loop":this.match(B._switch)?"switch":null,u=this.state.labels.length-1;u>=0;u--){var l=this.state.labels[u];if(l.statementStart!==e.start)break;l.statementStart=this.state.start,l.kind=o}return this.state.labels.push({name:t,kind:o,statementStart:this.state.start}),e.body=this.parseStatement(!0),this.state.labels.pop(),e.label=r,this.finishNode(e,"LabeledStatement")},K.parseExpressionStatement=function(e,t){return e.expression=t,this.semicolon(),this.finishNode(e,"ExpressionStatement")},K.parseBlock=function(e){var t=this.startNode();return this.expect(B.braceL),this.parseBlockBody(t,e,!1,B.braceR),this.finishNode(t,"BlockStatement")},K.isValidDirective=function(e){return"ExpressionStatement"===e.type&&"StringLiteral"===e.expression.type&&!e.expression.extra.parenthesized},K.parseBlockBody=function(e,t,r,n){e.body=[],e.directives=[];for(var i=!1,s=void 0,a=void 0;!this.eat(n);){i||!this.state.containsOctal||a||(a=this.state.octalPosition);var o=this.parseStatement(!0,r);if(t&&!i&&this.isValidDirective(o)){var u=this.stmtToDirective(o);e.directives.push(u),void 0===s&&"use strict"===u.value.value&&(s=this.state.strict,this.setStrict(!0),a&&this.raise(a,"Octal literal in strict mode"))}else i=!0,e.body.push(o)}!1===s&&this.setStrict(!1)},K.parseFor=function(e,t){return e.init=t,this.expect(B.semi),e.test=this.match(B.semi)?null:this.parseExpression(),this.expect(B.semi),e.update=this.match(B.parenR)?null:this.parseExpression(),this.expect(B.parenR),e.body=this.parseStatement(!1),this.state.labels.pop(),this.finishNode(e,"ForStatement")},K.parseForIn=function(e,t,r){var n=void 0;return r?(this.eatContextual("of"),n="ForAwaitStatement"):(n=this.match(B._in)?"ForInStatement":"ForOfStatement",this.next()),e.left=t,e.right=this.parseExpression(),this.expect(B.parenR),e.body=this.parseStatement(!1),this.state.labels.pop(),this.finishNode(e,n)},K.parseVar=function(e,t,r){for(e.declarations=[],e.kind=r.keyword;;){var n=this.startNode();if(this.parseVarHead(n),this.eat(B.eq)?n.init=this.parseMaybeAssign(t):r!==B._const||this.match(B._in)||this.isContextual("of")?"Identifier"===n.id.type||t&&(this.match(B._in)||this.isContextual("of"))?n.init=null:this.raise(this.state.lastTokEnd,"Complex binding patterns require an initialization value"):this.unexpected(),e.declarations.push(this.finishNode(n,"VariableDeclarator")),!this.eat(B.comma))break}return e},K.parseVarHead=function(e){e.id=this.parseBindingAtom(),this.checkLVal(e.id,!0,void 0,"variable declaration")},K.parseFunction=function(e,t,r,n,i){var s=this.state.inMethod;return this.state.inMethod=!1,this.initFunction(e,n),this.match(B.star)&&(e.async&&!this.hasPlugin("asyncGenerators")?this.unexpected():(e.generator=!0,this.next())),!t||i||this.match(B.name)||this.match(B._yield)||this.unexpected(),(this.match(B.name)||this.match(B._yield))&&(e.id=this.parseBindingIdentifier()),this.parseFunctionParams(e),this.parseFunctionBody(e,r),this.state.inMethod=s,this.finishNode(e,t?"FunctionDeclaration":"FunctionExpression")},K.parseFunctionParams=function(e){this.expect(B.parenL),e.params=this.parseBindingList(B.parenR)},K.parseClass=function(e,t,r){return this.next(),this.takeDecorators(e),this.parseClassId(e,t,r),this.parseClassSuper(e),this.parseClassBody(e),this.finishNode(e,t?"ClassDeclaration":"ClassExpression")},K.isClassProperty=function(){return this.match(B.eq)||this.match(B.semi)||this.match(B.braceR)},K.isClassMethod=function(){return this.match(B.parenL)},K.isNonstaticConstructor=function(e){return!(e.computed||e.static||"constructor"!==e.key.name&&"constructor"!==e.key.value)},K.parseClassBody=function(e){var t=this.state.strict;this.state.strict=!0;var r=!1,n=!1,i=[],s=this.startNode();for(s.body=[],this.expect(B.braceL);!this.eat(B.braceR);)if(this.eat(B.semi))i.length>0&&this.raise(this.state.lastTokEnd,"Decorators must not be followed by a semicolon");else if(this.match(B.at))i.push(this.parseDecorator());else{var a=this.startNode();if(i.length&&(a.decorators=i,i=[]),a.static=!1,this.match(B.name)&&"static"===this.state.value){var o=this.parseIdentifier(!0);if(this.isClassMethod()){a.kind="method",a.computed=!1,a.key=o,this.parseClassMethod(s,a,!1,!1);continue}if(this.isClassProperty()){a.computed=!1,a.key=o,s.body.push(this.parseClassProperty(a));continue}a.static=!0}if(this.eat(B.star))a.kind="method",this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't be a generator"),a.computed||!a.static||"prototype"!==a.key.name&&"prototype"!==a.key.value||this.raise(a.key.start,"Classes may not have static property named prototype"),this.parseClassMethod(s,a,!0,!1);else{var u=this.match(B.name),l=this.parsePropertyName(a);if(a.computed||!a.static||"prototype"!==a.key.name&&"prototype"!==a.key.value||this.raise(a.key.start,"Classes may not have static property named prototype"),this.isClassMethod())this.isNonstaticConstructor(a)?(n?this.raise(l.start,"Duplicate constructor in the same class"):a.decorators&&this.raise(a.start,"You can't attach decorators to a class constructor"),n=!0,a.kind="constructor"):a.kind="method",this.parseClassMethod(s,a,!1,!1);else if(this.isClassProperty())this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Classes may not have a non-static field named 'constructor'"),s.body.push(this.parseClassProperty(a));else if(u&&"async"===l.name&&!this.isLineTerminator()){var c=this.hasPlugin("asyncGenerators")&&this.eat(B.star);a.kind="method",this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't be an async function"),this.parseClassMethod(s,a,c,!0)}else!u||"get"!==l.name&&"set"!==l.name||this.isLineTerminator()&&this.match(B.star)?this.hasPlugin("classConstructorCall")&&u&&"call"===l.name&&this.match(B.name)&&"constructor"===this.state.value?(r?this.raise(a.start,"Duplicate constructor call in the same class"):a.decorators&&this.raise(a.start,"You can't attach decorators to a class constructor"),r=!0,a.kind="constructorCall",this.parsePropertyName(a),this.parseClassMethod(s,a,!1,!1)):this.isLineTerminator()?(this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Classes may not have a non-static field named 'constructor'"),s.body.push(this.parseClassProperty(a))):this.unexpected():(a.kind=l.name,this.parsePropertyName(a),this.isNonstaticConstructor(a)&&this.raise(a.key.start,"Constructor can't have get/set modifier"),this.parseClassMethod(s,a,!1,!1),this.checkGetterSetterParamCount(a))}}i.length&&this.raise(this.state.start,"You have trailing decorators with no method"),e.body=this.finishNode(s,"ClassBody"),this.state.strict=t},K.parseClassProperty=function(e){return this.state.inClassProperty=!0,this.match(B.eq)?(this.hasPlugin("classProperties")||this.unexpected(),this.next(),e.value=this.parseMaybeAssign()):e.value=null,this.semicolon(),this.state.inClassProperty=!1,this.finishNode(e,"ClassProperty")},K.parseClassMethod=function(e,t,r,n){this.parseMethod(t,r,n),e.body.push(this.finishNode(t,"ClassMethod"))},K.parseClassId=function(e,t,r){this.match(B.name)?e.id=this.parseIdentifier():r||!t?e.id=null:this.unexpected()},K.parseClassSuper=function(e){e.superClass=this.eat(B._extends)?this.parseExprSubscripts():null},K.parseExport=function(e){if(this.next(),this.match(B.star)){var t=this.startNode();if(this.next(),!this.hasPlugin("exportExtensions")||!this.eatContextual("as"))return this.parseExportFrom(e,!0),this.finishNode(e,"ExportAllDeclaration");t.exported=this.parseIdentifier(),e.specifiers=[this.finishNode(t,"ExportNamespaceSpecifier")],this.parseExportSpecifiersMaybe(e),this.parseExportFrom(e,!0)}else if(this.hasPlugin("exportExtensions")&&this.isExportDefaultSpecifier()){var r=this.startNode();if(r.exported=this.parseIdentifier(!0),e.specifiers=[this.finishNode(r,"ExportDefaultSpecifier")],this.match(B.comma)&&this.lookahead().type===B.star){this.expect(B.comma);var n=this.startNode();this.expect(B.star),this.expectContextual("as"),n.exported=this.parseIdentifier(),e.specifiers.push(this.finishNode(n,"ExportNamespaceSpecifier"))}else this.parseExportSpecifiersMaybe(e);this.parseExportFrom(e,!0)}else{if(this.eat(B._default)){var i=this.startNode(),s=!1;return this.eat(B._function)?i=this.parseFunction(i,!0,!1,!1,!0):this.match(B._class)?i=this.parseClass(i,!0,!0):(s=!0,i=this.parseMaybeAssign()),e.declaration=i,s&&this.semicolon(),this.checkExport(e,!0,!0),this.finishNode(e,"ExportDefaultDeclaration")}this.shouldParseExportDeclaration()?(e.specifiers=[],e.source=null,e.declaration=this.parseExportDeclaration(e)):(e.declaration=null,e.specifiers=this.parseExportSpecifiers(),this.parseExportFrom(e))}return this.checkExport(e,!0),this.finishNode(e,"ExportNamedDeclaration")},K.parseExportDeclaration=function(){return this.parseStatement(!0)},K.isExportDefaultSpecifier=function(){if(this.match(B.name))return"async"!==this.state.value;if(!this.match(B._default))return!1;var e=this.lookahead();return e.type===B.comma||e.type===B.name&&"from"===e.value},K.parseExportSpecifiersMaybe=function(e){this.eat(B.comma)&&(e.specifiers=e.specifiers.concat(this.parseExportSpecifiers()))},K.parseExportFrom=function(e,t){this.eatContextual("from")?(e.source=this.match(B.string)?this.parseExprAtom():this.unexpected(),this.checkExport(e)):t?this.unexpected():e.source=null,this.semicolon()},K.shouldParseExportDeclaration=function(){return"var"===this.state.type.keyword||"const"===this.state.type.keyword||"let"===this.state.type.keyword||"function"===this.state.type.keyword||"class"===this.state.type.keyword||this.isContextual("async")},K.checkExport=function(e,t,r){if(t)if(r)this.checkDuplicateExports(e,"default");else if(e.specifiers&&e.specifiers.length)for(var n=e.specifiers,i=Array.isArray(n),s=0,n=i?n:n[Symbol.iterator]();;){var a;if(i){if(s>=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}var o=a;this.checkDuplicateExports(o,o.exported.name)}else if(e.declaration)if("FunctionDeclaration"===e.declaration.type||"ClassDeclaration"===e.declaration.type)this.checkDuplicateExports(e,e.declaration.id.name);else if("VariableDeclaration"===e.declaration.type)for(var u=e.declaration.declarations,l=Array.isArray(u),c=0,u=l?u:u[Symbol.iterator]();;){var p;if(l){if(c>=u.length)break;p=u[c++]}else{if((c=u.next()).done)break;p=c.value}var h=p;this.checkDeclaration(h.id)}if(this.state.decorators.length){var f=e.declaration&&("ClassDeclaration"===e.declaration.type||"ClassExpression"===e.declaration.type);e.declaration&&f||this.raise(e.start,"You can only use decorators on an export when exporting a class"),this.takeDecorators(e.declaration)}},K.checkDeclaration=function(e){if("ObjectPattern"===e.type)for(var t=e.properties,r=Array.isArray(t),n=0,t=r?t:t[Symbol.iterator]();;){var i;if(r){if(n>=t.length)break;i=t[n++]}else{if((n=t.next()).done)break;i=n.value}var s=i;this.checkDeclaration(s)}else if("ArrayPattern"===e.type)for(var a=e.elements,o=Array.isArray(a),u=0,a=o?a:a[Symbol.iterator]();;){var l;if(o){if(u>=a.length)break;l=a[u++]}else{if((u=a.next()).done)break;l=u.value}var c=l;c&&this.checkDeclaration(c)}else"ObjectProperty"===e.type?this.checkDeclaration(e.value):"RestElement"===e.type||"RestProperty"===e.type?this.checkDeclaration(e.argument):"Identifier"===e.type&&this.checkDuplicateExports(e,e.name)},K.checkDuplicateExports=function(e,t){this.state.exportedIdentifiers.indexOf(t)>-1&&this.raiseDuplicateExportError(e,t),this.state.exportedIdentifiers.push(t)},K.raiseDuplicateExportError=function(e,t){this.raise(e.start,"default"===t?"Only one default export allowed per module.":"`"+t+"` has already been exported. 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a;if(i){if(s>=n.length)break;a=n[s++]}else{if((s=n.next()).done)break;a=s.value}var o=a;"ObjectMethod"===o.type?"get"===o.kind||"set"===o.kind?this.raise(o.key.start,"Object pattern can't contain getter or setter"):this.raise(o.key.start,"Object pattern can't contain methods"):this.toAssignable(o,t,"object destructuring pattern")}break;case"ObjectProperty":this.toAssignable(e.value,t,r);break;case"SpreadProperty":e.type="RestProperty";var u=e.argument;this.toAssignable(u,t,r);break;case"ArrayExpression":e.type="ArrayPattern",this.toAssignableList(e.elements,t,r);break;case"AssignmentExpression":"="===e.operator?(e.type="AssignmentPattern",delete e.operator):this.raise(e.left.end,"Only '=' operator can be used for specifying default value.");break;case"MemberExpression":if(!t)break;default:var l="Invalid left-hand side"+(r?" in "+r:"expression");this.raise(e.start,l)}return e},$.toAssignableList=function(e,t,r){var n=e.length;if(n){var i=e[n-1];if(i&&"RestElement"===i.type)--n;else if(i&&"SpreadElement"===i.type){i.type="RestElement";var s=i.argument;this.toAssignable(s,t,r),"Identifier"!==s.type&&"MemberExpression"!==s.type&&"ArrayPattern"!==s.type&&this.unexpected(s.start),--n}}for(var a=0;a=s.length)break;u=s[o++]}else{if((o=s.next()).done)break;u=o.value}var l=u;"ObjectProperty"===l.type&&(l=l.value),this.checkLVal(l,t,r,"object destructuring pattern")}break;case"ArrayPattern":for(var c=e.elements,p=Array.isArray(c),h=0,c=p?c:c[Symbol.iterator]();;){var f;if(p){if(h>=c.length)break;f=c[h++]}else{if((h=c.next()).done)break;f=h.value}var d=f;d&&this.checkLVal(d,t,r,"array destructuring pattern")}break;case"AssignmentPattern":this.checkLVal(e.left,t,r,"assignment pattern");break;case"RestProperty":this.checkLVal(e.argument,t,r,"rest property");break;case"RestElement":this.checkLVal(e.argument,t,r,"rest element");break;default:var m=(t?"Binding invalid":"Invalid")+" left-hand side"+(n?" in "+n:"expression");this.raise(e.start,m)}};var Q=W.prototype;Q.checkPropClash=function(e,t){if(!e.computed&&!e.kind){var r=e.key;"__proto__"===("Identifier"===r.type?r.name:String(r.value))&&(t.proto&&this.raise(r.start,"Redefinition of __proto__ property"),t.proto=!0)}},Q.getExpression=function(){this.nextToken();var e=this.parseExpression();return this.match(B.eof)||this.unexpected(),e},Q.parseExpression=function(e,t){var r=this.state.start,n=this.state.startLoc,i=this.parseMaybeAssign(e,t);if(this.match(B.comma)){var s=this.startNodeAt(r,n);for(s.expressions=[i];this.eat(B.comma);)s.expressions.push(this.parseMaybeAssign(e,t));return this.toReferencedList(s.expressions),this.finishNode(s,"SequenceExpression")}return i},Q.parseMaybeAssign=function(e,t,r,n){var i=this.state.start,s=this.state.startLoc;if(this.match(B._yield)&&this.state.inGenerator){var a=this.parseYield();return r&&(a=r.call(this,a,i,s)),a}var o=void 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t&&t.start?s:this.parseConditional(s,e,n,i,r)},Q.parseConditional=function(e,t,r,n){if(this.eat(B.question)){var i=this.startNodeAt(r,n);return i.test=e,i.consequent=this.parseMaybeAssign(),this.expect(B.colon),i.alternate=this.parseMaybeAssign(t),this.finishNode(i,"ConditionalExpression")}return e},Q.parseExprOps=function(e,t){var r=this.state.start,n=this.state.startLoc,i=this.parseMaybeUnary(t);return t&&t.start?i:this.parseExprOp(i,r,n,-1,e)},Q.parseExprOp=function(e,t,r,n,i){var s=this.state.type.binop;if(!(null==s||i&&this.match(B._in))&&s>n){var a=this.startNodeAt(t,r);a.left=e,a.operator=this.state.value,"**"!==a.operator||"UnaryExpression"!==e.type||!e.extra||e.extra.parenthesizedArgument||e.extra.parenthesized||this.raise(e.argument.start,"Illegal expression. 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i=this.state.start,s=this.state.startLoc,a=this.parseExprSubscripts(e);if(e&&e.start)return a;for(;this.state.type.postfix&&!this.canInsertSemicolon();){var o=this.startNodeAt(i,s);o.operator=this.state.value,o.prefix=!1,o.argument=a,this.checkLVal(a,void 0,void 0,"postfix operation"),this.next(),a=this.finishNode(o,"UpdateExpression")}return a},Q.parseExprSubscripts=function(e){var t=this.state.start,r=this.state.startLoc,n=this.state.potentialArrowAt,i=this.parseExprAtom(e);return"ArrowFunctionExpression"===i.type&&i.start===n?i:e&&e.start?i:this.parseSubscripts(i,t,r)},Q.parseSubscripts=function(e,t,r,n){for(;;){if(!n&&this.eat(B.doubleColon)){var i=this.startNodeAt(t,r);return i.object=e,i.callee=this.parseNoCallExpr(),this.parseSubscripts(this.finishNode(i,"BindExpression"),t,r,n)}if(this.eat(B.dot)){var s=this.startNodeAt(t,r);s.object=e,s.property=this.parseIdentifier(!0),s.computed=!1,e=this.finishNode(s,"MemberExpression")}else if(this.eat(B.bracketL)){var a=this.startNodeAt(t,r);a.object=e,a.property=this.parseExpression(),a.computed=!0,this.expect(B.bracketR),e=this.finishNode(a,"MemberExpression")}else if(!n&&this.match(B.parenL)){var o=this.state.potentialArrowAt===e.start&&"Identifier"===e.type&&"async"===e.name&&!this.canInsertSemicolon();this.next();var u=this.startNodeAt(t,r);if(u.callee=e,u.arguments=this.parseCallExpressionArguments(B.parenR,o),"Import"===u.callee.type&&1!==u.arguments.length&&this.raise(u.start,"import() requires exactly one argument"),e=this.finishNode(u,"CallExpression"),o&&this.shouldParseAsyncArrow())return this.parseAsyncArrowFromCallExpression(this.startNodeAt(t,r),u);this.toReferencedList(u.arguments)}else{if(!this.match(B.backQuote))return e;var l=this.startNodeAt(t,r);l.tag=e,l.quasi=this.parseTemplate(!0),e=this.finishNode(l,"TaggedTemplateExpression")}}},Q.parseCallExpressionArguments=function(e,t){for(var r=[],n=void 0,i=!0;!this.eat(e);){if(i)i=!1;else if(this.expect(B.comma),this.eat(e))break;this.match(B.parenL)&&!n&&(n=this.state.start),r.push(this.parseExprListItem(!1,t?{start:0}:void 0,t?{start:0}:void 0))}return t&&n&&this.shouldParseAsyncArrow()&&this.unexpected(),r},Q.shouldParseAsyncArrow=function(){return this.match(B.arrow)},Q.parseAsyncArrowFromCallExpression=function(e,t){return this.expect(B.arrow),this.parseArrowExpression(e,t.arguments,!0)},Q.parseNoCallExpr=function(){var e=this.state.start,t=this.state.startLoc;return this.parseSubscripts(this.parseExprAtom(),e,t,!0)},Q.parseExprAtom=function(e){var t=this.state.potentialArrowAt===this.state.start,r=void 0;switch(this.state.type){case B._super:return this.state.inMethod||this.state.inClassProperty||this.options.allowSuperOutsideMethod||this.raise(this.state.start,"'super' outside of function or class"),r=this.startNode(),this.next(),this.match(B.parenL)||this.match(B.bracketL)||this.match(B.dot)||this.unexpected(),this.match(B.parenL)&&"constructor"!==this.state.inMethod&&!this.options.allowSuperOutsideMethod&&this.raise(r.start,"super() outside of class constructor"),this.finishNode(r,"Super");case B._import:return this.hasPlugin("dynamicImport")||this.unexpected(),r=this.startNode(),this.next(),this.match(B.parenL)||this.unexpected(null,B.parenL),this.finishNode(r,"Import");case B._this:return r=this.startNode(),this.next(),this.finishNode(r,"ThisExpression");case B._yield:this.state.inGenerator&&this.unexpected();case B.name:r=this.startNode();var n="await"===this.state.value&&this.state.inAsync,i=this.shouldAllowYieldIdentifier(),s=this.parseIdentifier(n||i);if("await"===s.name){if(this.state.inAsync||this.inModule)return this.parseAwait(r)}else{if("async"===s.name&&this.match(B._function)&&!this.canInsertSemicolon())return this.next(),this.parseFunction(r,!1,!1,!0);if(t&&"async"===s.name&&this.match(B.name)){var a=[this.parseIdentifier()];return this.expect(B.arrow),this.parseArrowExpression(r,a,!0)}}return t&&!this.canInsertSemicolon()&&this.eat(B.arrow)?this.parseArrowExpression(r,[s]):s;case B._do:if(this.hasPlugin("doExpressions")){var o=this.startNode();this.next();var u=this.state.inFunction,l=this.state.labels;return this.state.labels=[],this.state.inFunction=!1,o.body=this.parseBlock(!1,!0),this.state.inFunction=u,this.state.labels=l,this.finishNode(o,"DoExpression")}case B.regexp:var c=this.state.value;return r=this.parseLiteral(c.value,"RegExpLiteral"),r.pattern=c.pattern,r.flags=c.flags,r;case B.num:return this.parseLiteral(this.state.value,"NumericLiteral");case B.string:return this.parseLiteral(this.state.value,"StringLiteral");case B._null:return r=this.startNode(),this.next(),this.finishNode(r,"NullLiteral");case B._true:case B._false:return r=this.startNode(),r.value=this.match(B._true),this.next(),this.finishNode(r,"BooleanLiteral");case B.parenL:return this.parseParenAndDistinguishExpression(null,null,t);case B.bracketL:return r=this.startNode(),this.next(),r.elements=this.parseExprList(B.bracketR,!0,e),this.toReferencedList(r.elements),this.finishNode(r,"ArrayExpression");case B.braceL:return this.parseObj(!1,e);case B._function:return this.parseFunctionExpression();case B.at:this.parseDecorators();case B._class:return r=this.startNode(),this.takeDecorators(r),this.parseClass(r,!1);case B._new:return this.parseNew();case B.backQuote:return this.parseTemplate(!1);case B.doubleColon:r=this.startNode(),this.next(),r.object=null;var p=r.callee=this.parseNoCallExpr();if("MemberExpression"===p.type)return this.finishNode(r,"BindExpression");this.raise(p.start,"Binding should be performed on object property.");default:this.unexpected()}},Q.parseFunctionExpression=function(){var e=this.startNode(),t=this.parseIdentifier(!0);return this.state.inGenerator&&this.eat(B.dot)&&this.hasPlugin("functionSent")?this.parseMetaProperty(e,t,"sent"):this.parseFunction(e,!1)},Q.parseMetaProperty=function(e,t,r){return e.meta=t,e.property=this.parseIdentifier(!0),e.property.name!==r&&this.raise(e.property.start,"The only valid meta property for new is "+t.name+"."+r),this.finishNode(e,"MetaProperty")},Q.parseLiteral=function(e,t,r,n){r=r||this.state.start,n=n||this.state.startLoc;var i=this.startNodeAt(r,n);return this.addExtra(i,"rawValue",e),this.addExtra(i,"raw",this.input.slice(r,this.state.end)),i.value=e,this.next(),this.finishNode(i,t)},Q.parseParenExpression=function(){this.expect(B.parenL);var e=this.parseExpression();return this.expect(B.parenR),e},Q.parseParenAndDistinguishExpression=function(e,t,r){e=e||this.state.start,t=t||this.state.startLoc;var n=void 0;this.expect(B.parenL);for(var i=this.state.start,s=this.state.startLoc,a=[],o={start:0},u={start:0},l=!0,c=void 0,p=void 0;!this.match(B.parenR);){if(l)l=!1;else if(this.expect(B.comma,u.start||null),this.match(B.parenR)){p=this.state.start;break}if(this.match(B.ellipsis)){var h=this.state.start,f=this.state.startLoc;c=this.state.start,a.push(this.parseParenItem(this.parseRest(),h,f));break}a.push(this.parseMaybeAssign(!1,o,this.parseParenItem,u))}var d=this.state.start,m=this.state.startLoc;this.expect(B.parenR);var y=this.startNodeAt(e,t);if(r&&this.shouldParseArrow()&&(y=this.parseArrow(y))){for(var g=a,b=Array.isArray(g),v=0,g=b?g:g[Symbol.iterator]();;){var x;if(b){if(v>=g.length)break;x=g[v++]}else{if((v=g.next()).done)break;x=v.value}var E=x;E.extra&&E.extra.parenthesized&&this.unexpected(E.extra.parenStart)}return this.parseArrowExpression(y,a)}return a.length||this.unexpected(this.state.lastTokStart),p&&this.unexpected(p),c&&this.unexpected(c),o.start&&this.unexpected(o.start),u.start&&this.unexpected(u.start),a.length>1?((n=this.startNodeAt(i,s)).expressions=a,this.toReferencedList(n.expressions),this.finishNodeAt(n,"SequenceExpression",d,m)):n=a[0],this.addExtra(n,"parenthesized",!0),this.addExtra(n,"parenStart",e),n},Q.shouldParseArrow=function(){return!this.canInsertSemicolon()},Q.parseArrow=function(e){if(this.eat(B.arrow))return e},Q.parseParenItem=function(e){return e},Q.parseNew=function(){var e=this.startNode(),t=this.parseIdentifier(!0);if(this.eat(B.dot)){var r=this.parseMetaProperty(e,t,"target");return this.state.inFunction||this.raise(r.property.start,"new.target can only be used in functions"),r}return e.callee=this.parseNoCallExpr(),this.eat(B.parenL)?(e.arguments=this.parseExprList(B.parenR),this.toReferencedList(e.arguments)):e.arguments=[],this.finishNode(e,"NewExpression")},Q.parseTemplateElement=function(e){var t=this.startNode();return null===this.state.value&&(e&&this.hasPlugin("templateInvalidEscapes")?this.state.invalidTemplateEscapePosition=null:this.raise(this.state.invalidTemplateEscapePosition,"Invalid escape sequence in template")),t.value={raw:this.input.slice(this.state.start,this.state.end).replace(/\r\n?/g,"\n"),cooked:this.state.value},this.next(),t.tail=this.match(B.backQuote),this.finishNode(t,"TemplateElement")},Q.parseTemplate=function(e){var t=this.startNode();this.next(),t.expressions=[];var r=this.parseTemplateElement(e);for(t.quasis=[r];!r.tail;)this.expect(B.dollarBraceL),t.expressions.push(this.parseExpression()),this.expect(B.braceR),t.quasis.push(r=this.parseTemplateElement(e));return this.next(),this.finishNode(t,"TemplateLiteral")},Q.parseObj=function(e,t){var r=[],n=Object.create(null),i=!0,s=this.startNode();s.properties=[],this.next();for(var a=null;!this.eat(B.braceR);){if(i)i=!1;else if(this.expect(B.comma),this.eat(B.braceR))break;for(;this.match(B.at);)r.push(this.parseDecorator());var o=this.startNode(),u=!1,l=!1,c=void 0,p=void 0;if(r.length&&(o.decorators=r,r=[]),this.hasPlugin("objectRestSpread")&&this.match(B.ellipsis)){if(o=this.parseSpread(e?{start:0}:void 0),o.type=e?"RestProperty":"SpreadProperty",e&&this.toAssignable(o.argument,!0,"object pattern"),s.properties.push(o),!e)continue;var h=this.state.start;if(null===a){if(this.eat(B.braceR))break;if(this.match(B.comma)&&this.lookahead().type===B.braceR)continue;a=h;continue}this.unexpected(a,"Cannot have multiple rest elements when destructuring")}if(o.method=!1,o.shorthand=!1,(e||t)&&(c=this.state.start,p=this.state.startLoc),e||(u=this.eat(B.star)),!e&&this.isContextual("async")){u&&this.unexpected();var f=this.parseIdentifier();this.match(B.colon)||this.match(B.parenL)||this.match(B.braceR)||this.match(B.eq)||this.match(B.comma)?(o.key=f,o.computed=!1):(l=!0,this.hasPlugin("asyncGenerators")&&(u=this.eat(B.star)),this.parsePropertyName(o))}else this.parsePropertyName(o);this.parseObjPropValue(o,c,p,u,l,e,t),this.checkPropClash(o,n),o.shorthand&&this.addExtra(o,"shorthand",!0),s.properties.push(o)}return null!==a&&this.unexpected(a,"The rest element has to be the last element when destructuring"),r.length&&this.raise(this.state.start,"You have trailing decorators with no property"),this.finishNode(s,e?"ObjectPattern":"ObjectExpression")},Q.isGetterOrSetterMethod=function(e,t){return!t&&!e.computed&&"Identifier"===e.key.type&&("get"===e.key.name||"set"===e.key.name)&&(this.match(B.string)||this.match(B.num)||this.match(B.bracketL)||this.match(B.name)||this.state.type.keyword)},Q.checkGetterSetterParamCount=function(e){var t="get"===e.kind?0:1;if(e.params.length!==t){var r=e.start;"get"===e.kind?this.raise(r,"getter should have no params"):this.raise(r,"setter should have exactly one param")}},Q.parseObjectMethod=function(e,t,r,n){return r||t||this.match(B.parenL)?(n&&this.unexpected(),e.kind="method",e.method=!0,this.parseMethod(e,t,r),this.finishNode(e,"ObjectMethod")):this.isGetterOrSetterMethod(e,n)?((t||r)&&this.unexpected(),e.kind=e.key.name,this.parsePropertyName(e),this.parseMethod(e),this.checkGetterSetterParamCount(e),this.finishNode(e,"ObjectMethod")):void 0},Q.parseObjectProperty=function(e,t,r,n,i){return this.eat(B.colon)?(e.value=n?this.parseMaybeDefault(this.state.start,this.state.startLoc):this.parseMaybeAssign(!1,i),this.finishNode(e,"ObjectProperty")):e.computed||"Identifier"!==e.key.type?void 0:(this.checkReservedWord(e.key.name,e.key.start,!0,!0),n?e.value=this.parseMaybeDefault(t,r,e.key.__clone()):this.match(B.eq)&&i?(i.start||(i.start=this.state.start),e.value=this.parseMaybeDefault(t,r,e.key.__clone())):e.value=e.key.__clone(),e.shorthand=!0,this.finishNode(e,"ObjectProperty"))},Q.parseObjPropValue=function(e,t,r,n,i,s,a){var o=this.parseObjectMethod(e,n,i,s)||this.parseObjectProperty(e,t,r,s,a);return o||this.unexpected(),o},Q.parsePropertyName=function(e){if(this.eat(B.bracketL))e.computed=!0,e.key=this.parseMaybeAssign(),this.expect(B.bracketR);else{e.computed=!1;var t=this.state.inPropertyName;this.state.inPropertyName=!0,e.key=this.match(B.num)||this.match(B.string)?this.parseExprAtom():this.parseIdentifier(!0),this.state.inPropertyName=t}return e.key},Q.initFunction=function(e,t){e.id=null,e.generator=!1,e.expression=!1,e.async=!!t},Q.parseMethod=function(e,t,r){var n=this.state.inMethod;return this.state.inMethod=e.kind||!0,this.initFunction(e,r),this.expect(B.parenL),e.params=this.parseBindingList(B.parenR),e.generator=!!t,this.parseFunctionBody(e),this.state.inMethod=n,e},Q.parseArrowExpression=function(e,t,r){return this.initFunction(e,r),e.params=this.toAssignableList(t,!0,"arrow function parameters"),this.parseFunctionBody(e,!0),this.finishNode(e,"ArrowFunctionExpression")},Q.isStrictBody=function(e,t){if(!t&&e.body.directives.length)for(var r=e.body.directives,n=Array.isArray(r),i=0,r=n?r:r[Symbol.iterator]();;){var s;if(n){if(i>=r.length)break;s=r[i++]}else{if((i=r.next()).done)break;s=i.value}if("use strict"===s.value.value)return!0}return!1},Q.parseFunctionBody=function(e,t){var r=t&&!this.match(B.braceL),n=this.state.inAsync;if(this.state.inAsync=e.async,r)e.body=this.parseMaybeAssign(),e.expression=!0;else{var i=this.state.inFunction,s=this.state.inGenerator,a=this.state.labels;this.state.inFunction=!0,this.state.inGenerator=e.generator,this.state.labels=[],e.body=this.parseBlock(!0),e.expression=!1,this.state.inFunction=i,this.state.inGenerator=s,this.state.labels=a}this.state.inAsync=n;var o=this.isStrictBody(e,r),u=this.state.strict||t||o;if(o&&e.id&&"Identifier"===e.id.type&&"yield"===e.id.name&&this.raise(e.id.start,"Binding yield in strict mode"),u){var l=Object.create(null),c=this.state.strict;o&&(this.state.strict=!0),e.id&&this.checkLVal(e.id,!0,void 0,"function name");for(var p=e.params,h=Array.isArray(p),f=0,p=h?p:p[Symbol.iterator]();;){var d;if(h){if(f>=p.length)break;d=p[f++]}else{if((f=p.next()).done)break;d=f.value}var m=d;o&&"Identifier"!==m.type&&this.raise(m.start,"Non-simple parameter in strict mode"),this.checkLVal(m,!0,l,"function parameter list")}this.state.strict=c}},Q.parseExprList=function(e,t,r){for(var n=[],i=!0;!this.eat(e);){if(i)i=!1;else if(this.expect(B.comma),this.eat(e))break;n.push(this.parseExprListItem(t,r))}return n},Q.parseExprListItem=function(e,t,r){return e&&this.match(B.comma)?null:this.match(B.ellipsis)?this.parseSpread(t):this.parseMaybeAssign(!1,t,this.parseParenItem,r)},Q.parseIdentifier=function(e){var t=this.startNode();return e||this.checkReservedWord(this.state.value,this.state.start,!!this.state.type.keyword,!1),this.match(B.name)?t.name=this.state.value:this.state.type.keyword?t.name=this.state.type.keyword:this.unexpected(),!e&&"await"===t.name&&this.state.inAsync&&this.raise(t.start,"invalid use of await inside of an async function"),t.loc.identifierName=t.name,this.next(),this.finishNode(t,"Identifier")},Q.checkReservedWord=function(e,t,r,n){(this.isReservedWord(e)||r&&this.isKeyword(e))&&this.raise(t,e+" is a reserved word"),this.state.strict&&(m.strict(e)||n&&m.strictBind(e))&&this.raise(t,e+" is a reserved word in strict mode")},Q.parseAwait=function(e){return this.state.inAsync||this.unexpected(),this.match(B.star)&&this.raise(e.start,"await* has been removed from the async functions proposal. Use Promise.all() instead."),e.argument=this.parseMaybeUnary(),this.finishNode(e,"AwaitExpression")},Q.parseYield=function(){var e=this.startNode();return this.next(),this.match(B.semi)||this.canInsertSemicolon()||!this.match(B.star)&&!this.state.type.startsExpr?(e.delegate=!1,e.argument=null):(e.delegate=this.eat(B.star),e.argument=this.parseMaybeAssign()),this.finishNode(e,"YieldExpression")};var Z=W.prototype,ee=["leadingComments","trailingComments","innerComments"],te=function(){function e(t,r,n){S(this,e),this.type="",this.start=t,this.end=0,this.loc=new V(r),n&&(this.loc.filename=n)}return e.prototype.__clone=function(){var t=new e;for(var r in this)ee.indexOf(r)<0&&(t[r]=this[r]);return t},e}();Z.startNode=function(){return new te(this.state.start,this.state.startLoc,this.filename)},Z.startNodeAt=function(e,t){return new te(e,t,this.filename)},Z.finishNode=function(e,t){return p.call(this,e,t,this.state.lastTokEnd,this.state.lastTokEndLoc)},Z.finishNodeAt=function(e,t,r,n){return p.call(this,e,t,r,n)},W.prototype.raise=function(e,t){var r=l(this.input,e);t+=" ("+r.line+":"+r.column+")";var n=new SyntaxError(t);throw n.pos=e,n.loc=r,n};var re=W.prototype;re.addComment=function(e){this.filename&&(e.loc.filename=this.filename),this.state.trailingComments.push(e),this.state.leadingComments.push(e)},re.processComment=function(e){if(!("Program"===e.type&&e.body.length>0)){var t=this.state.commentStack,r=void 0,n=void 0,i=void 0,s=void 0,a=void 0;if(this.state.trailingComments.length>0)this.state.trailingComments[0].start>=e.end?(i=this.state.trailingComments,this.state.trailingComments=[]):this.state.trailingComments.length=0;else{var o=h(t);t.length>0&&o.trailingComments&&o.trailingComments[0].start>=e.end&&(i=o.trailingComments,o.trailingComments=null)}for(t.length>0&&h(t).start>=e.start&&(r=t.pop());t.length>0&&h(t).start>=e.start;)n=t.pop();if(!n&&r&&(n=r),r&&this.state.leadingComments.length>0){var u=h(this.state.leadingComments);if("ObjectProperty"===r.type){if(u.start>=e.start&&this.state.commentPreviousNode){for(a=0;a0&&(r.trailingComments=this.state.leadingComments,this.state.leadingComments=[])}}else if("CallExpression"===e.type&&e.arguments&&e.arguments.length){var l=h(e.arguments);l&&u.start>=l.start&&u.end<=e.end&&this.state.commentPreviousNode&&this.state.leadingComments.length>0&&(l.trailingComments=this.state.leadingComments,this.state.leadingComments=[])}}if(n){if(n.leadingComments)if(n!==e&&h(n.leadingComments).end<=e.start)e.leadingComments=n.leadingComments,n.leadingComments=null;else for(s=n.leadingComments.length-2;s>=0;--s)if(n.leadingComments[s].end<=e.start){e.leadingComments=n.leadingComments.splice(0,s+1);break}}else if(this.state.leadingComments.length>0)if(h(this.state.leadingComments).end<=e.start){if(this.state.commentPreviousNode)for(a=0;a0&&(e.leadingComments=this.state.leadingComments,this.state.leadingComments=[])}else{for(s=0;se.start);s++);e.leadingComments=this.state.leadingComments.slice(0,s),0===e.leadingComments.length&&(e.leadingComments=null),0===(i=this.state.leadingComments.slice(s)).length&&(i=null)}this.state.commentPreviousNode=e,i&&(i.length&&i[0].start>=e.start&&h(i).end<=e.end?e.innerComments=i:e.trailingComments=i),t.push(e)}};var ne=W.prototype;ne.estreeParseRegExpLiteral=function(e){var t=e.pattern,r=e.flags,n=null;try{n=new RegExp(t,r)}catch(e){}var i=this.estreeParseLiteral(n);return i.regex={pattern:t,flags:r},i},ne.estreeParseLiteral=function(e){return this.parseLiteral(e,"Literal")},ne.directiveToStmt=function(e){var t=e.value,r=this.startNodeAt(e.start,e.loc.start),n=this.startNodeAt(t.start,t.loc.start);return n.value=t.value,n.raw=t.extra.raw,r.expression=this.finishNodeAt(n,"Literal",t.end,t.loc.end),r.directive=t.extra.raw.slice(1,-1),this.finishNodeAt(r,"ExpressionStatement",e.end,e.loc.end)};var ie=["any","mixed","empty","bool","boolean","number","string","void","null"],se=W.prototype;se.flowParseTypeInitialiser=function(e){var t=this.state.inType;this.state.inType=!0,this.expect(e||B.colon);var r=this.flowParseType();return this.state.inType=t,r},se.flowParsePredicate=function(){var e=this.startNode(),t=this.state.startLoc,r=this.state.start;this.expect(B.modulo);var n=this.state.startLoc;return this.expectContextual("checks"),t.line===n.line&&t.column===n.column-1||this.raise(r,"Spaces between ´%´ and ´checks´ are not allowed here."),this.eat(B.parenL)?(e.expression=this.parseExpression(),this.expect(B.parenR),this.finishNode(e,"DeclaredPredicate")):this.finishNode(e,"InferredPredicate")},se.flowParseTypeAndPredicateInitialiser=function(){var e=this.state.inType;this.state.inType=!0,this.expect(B.colon);var t=null,r=null;return this.match(B.modulo)?(this.state.inType=e,r=this.flowParsePredicate()):(t=this.flowParseType(),this.state.inType=e,this.match(B.modulo)&&(r=this.flowParsePredicate())),[t,r]},se.flowParseDeclareClass=function(e){return this.next(),this.flowParseInterfaceish(e,!0),this.finishNode(e,"DeclareClass")},se.flowParseDeclareFunction=function(e){this.next();var t=e.id=this.parseIdentifier(),r=this.startNode(),n=this.startNode();this.isRelational("<")?r.typeParameters=this.flowParseTypeParameterDeclaration():r.typeParameters=null,this.expect(B.parenL);var i=this.flowParseFunctionTypeParams();r.params=i.params,r.rest=i.rest,this.expect(B.parenR);var s=null,a=this.flowParseTypeAndPredicateInitialiser();return r.returnType=a[0],s=a[1],n.typeAnnotation=this.finishNode(r,"FunctionTypeAnnotation"),n.predicate=s,t.typeAnnotation=this.finishNode(n,"TypeAnnotation"),this.finishNode(t,t.type),this.semicolon(),this.finishNode(e,"DeclareFunction")},se.flowParseDeclare=function(e){return this.match(B._class)?this.flowParseDeclareClass(e):this.match(B._function)?this.flowParseDeclareFunction(e):this.match(B._var)?this.flowParseDeclareVariable(e):this.isContextual("module")?this.lookahead().type===B.dot?this.flowParseDeclareModuleExports(e):this.flowParseDeclareModule(e):this.isContextual("type")?this.flowParseDeclareTypeAlias(e):this.isContextual("opaque")?this.flowParseDeclareOpaqueType(e):this.isContextual("interface")?this.flowParseDeclareInterface(e):this.match(B._export)?this.flowParseDeclareExportDeclaration(e):void this.unexpected()},se.flowParseDeclareExportDeclaration=function(e){if(this.expect(B._export),this.isContextual("opaque"))return e.declaration=this.flowParseDeclare(this.startNode()),e.default=!1,this.finishNode(e,"DeclareExportDeclaration");throw this.unexpected()},se.flowParseDeclareVariable=function(e){return this.next(),e.id=this.flowParseTypeAnnotatableIdentifier(),this.semicolon(),this.finishNode(e,"DeclareVariable")},se.flowParseDeclareModule=function(e){this.next(),this.match(B.string)?e.id=this.parseExprAtom():e.id=this.parseIdentifier();var t=e.body=this.startNode(),r=t.body=[];for(this.expect(B.braceL);!this.match(B.braceR);){var n=this.startNode();if(this.match(B._import)){var i=this.lookahead();"type"!==i.value&&"typeof"!==i.value&&this.unexpected(null,"Imports within a `declare module` body must always be `import type` or `import typeof`"),this.parseImport(n)}else this.expectContextual("declare","Only declares and type imports are allowed inside declare module"),n=this.flowParseDeclare(n,!0);r.push(n)}return this.expect(B.braceR),this.finishNode(t,"BlockStatement"),this.finishNode(e,"DeclareModule")},se.flowParseDeclareModuleExports=function(e){return this.expectContextual("module"),this.expect(B.dot),this.expectContextual("exports"),e.typeAnnotation=this.flowParseTypeAnnotation(),this.semicolon(),this.finishNode(e,"DeclareModuleExports")},se.flowParseDeclareTypeAlias=function(e){return this.next(),this.flowParseTypeAlias(e),this.finishNode(e,"DeclareTypeAlias")},se.flowParseDeclareOpaqueType=function(e){return this.next(),this.flowParseOpaqueType(e,!0),this.finishNode(e,"DeclareOpaqueType")},se.flowParseDeclareInterface=function(e){return this.next(),this.flowParseInterfaceish(e),this.finishNode(e,"DeclareInterface")},se.flowParseInterfaceish=function(e){if(e.id=this.parseIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.extends=[],e.mixins=[],this.eat(B._extends))do{e.extends.push(this.flowParseInterfaceExtends())}while(this.eat(B.comma));if(this.isContextual("mixins")){this.next();do{e.mixins.push(this.flowParseInterfaceExtends())}while(this.eat(B.comma))}e.body=this.flowParseObjectType(!0,!1,!1)},se.flowParseInterfaceExtends=function(){var e=this.startNode();return e.id=this.flowParseQualifiedTypeIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterInstantiation():e.typeParameters=null,this.finishNode(e,"InterfaceExtends")},se.flowParseInterface=function(e){return this.flowParseInterfaceish(e,!1),this.finishNode(e,"InterfaceDeclaration")},se.flowParseRestrictedIdentifier=function(e){return ie.indexOf(this.state.value)>-1&&this.raise(this.state.start,"Cannot overwrite primitive type "+this.state.value),this.parseIdentifier(e)},se.flowParseTypeAlias=function(e){return e.id=this.flowParseRestrictedIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.right=this.flowParseTypeInitialiser(B.eq),this.semicolon(),this.finishNode(e,"TypeAlias")},se.flowParseOpaqueType=function(e,t){return this.expectContextual("type"),e.id=this.flowParseRestrictedIdentifier(),this.isRelational("<")?e.typeParameters=this.flowParseTypeParameterDeclaration():e.typeParameters=null,e.supertype=null,this.match(B.colon)&&(e.supertype=this.flowParseTypeInitialiser(B.colon)),e.impltype=null,t||(e.impltype=this.flowParseTypeInitialiser(B.eq)),this.semicolon(),this.finishNode(e,"OpaqueType")},se.flowParseTypeParameter=function(){var e=this.startNode(),t=this.flowParseVariance(),r=this.flowParseTypeAnnotatableIdentifier();return e.name=r.name,e.variance=t,e.bound=r.typeAnnotation,this.match(B.eq)&&(this.eat(B.eq),e.default=this.flowParseType()),this.finishNode(e,"TypeParameter")},se.flowParseTypeParameterDeclaration=function(){var e=this.state.inType,t=this.startNode();t.params=[],this.state.inType=!0,this.isRelational("<")||this.match(B.jsxTagStart)?this.next():this.unexpected();do{t.params.push(this.flowParseTypeParameter()),this.isRelational(">")||this.expect(B.comma)}while(!this.isRelational(">"));return this.expectRelational(">"),this.state.inType=e,this.finishNode(t,"TypeParameterDeclaration")},se.flowParseTypeParameterInstantiation=function(){var e=this.startNode(),t=this.state.inType;for(e.params=[],this.state.inType=!0,this.expectRelational("<");!this.isRelational(">");)e.params.push(this.flowParseType()),this.isRelational(">")||this.expect(B.comma);return this.expectRelational(">"),this.state.inType=t,this.finishNode(e,"TypeParameterInstantiation")},se.flowParseObjectPropertyKey=function(){return this.match(B.num)||this.match(B.string)?this.parseExprAtom():this.parseIdentifier(!0)},se.flowParseObjectTypeIndexer=function(e,t,r){return e.static=t,this.expect(B.bracketL),this.lookahead().type===B.colon?(e.id=this.flowParseObjectPropertyKey(),e.key=this.flowParseTypeInitialiser()):(e.id=null,e.key=this.flowParseType()),this.expect(B.bracketR),e.value=this.flowParseTypeInitialiser(),e.variance=r,this.flowObjectTypeSemicolon(),this.finishNode(e,"ObjectTypeIndexer")},se.flowParseObjectTypeMethodish=function(e){for(e.params=[],e.rest=null,e.typeParameters=null,this.isRelational("<")&&(e.typeParameters=this.flowParseTypeParameterDeclaration()),this.expect(B.parenL);!this.match(B.parenR)&&!this.match(B.ellipsis);)e.params.push(this.flowParseFunctionTypeParam()),this.match(B.parenR)||this.expect(B.comma);return this.eat(B.ellipsis)&&(e.rest=this.flowParseFunctionTypeParam()),this.expect(B.parenR),e.returnType=this.flowParseTypeInitialiser(),this.finishNode(e,"FunctionTypeAnnotation")},se.flowParseObjectTypeMethod=function(e,t,r,n){var i=this.startNodeAt(e,t);return i.value=this.flowParseObjectTypeMethodish(this.startNodeAt(e,t)),i.static=r,i.key=n,i.optional=!1,this.flowObjectTypeSemicolon(),this.finishNode(i,"ObjectTypeProperty")},se.flowParseObjectTypeCallProperty=function(e,t){var r=this.startNode();return e.static=t,e.value=this.flowParseObjectTypeMethodish(r),this.flowObjectTypeSemicolon(),this.finishNode(e,"ObjectTypeCallProperty")},se.flowParseObjectType=function(e,t,r){var n=this.state.inType;this.state.inType=!0;var i=this.startNode(),s=void 0,a=void 0,o=!1;i.callProperties=[],i.properties=[],i.indexers=[];var u=void 0,l=void 0;for(t&&this.match(B.braceBarL)?(this.expect(B.braceBarL),u=B.braceBarR,l=!0):(this.expect(B.braceL),u=B.braceR,l=!1),i.exact=l;!this.match(u);){var c=!1,p=this.state.start,h=this.state.startLoc;s=this.startNode(),e&&this.isContextual("static")&&this.lookahead().type!==B.colon&&(this.next(),o=!0);var f=this.state.start,d=this.flowParseVariance();this.match(B.bracketL)?i.indexers.push(this.flowParseObjectTypeIndexer(s,o,d)):this.match(B.parenL)||this.isRelational("<")?(d&&this.unexpected(f),i.callProperties.push(this.flowParseObjectTypeCallProperty(s,o))):this.match(B.ellipsis)?(r||this.unexpected(null,"Spread operator cannot appear in class or interface definitions"),d&&this.unexpected(d.start,"Spread properties cannot have variance"),this.expect(B.ellipsis),s.argument=this.flowParseType(),this.flowObjectTypeSemicolon(),i.properties.push(this.finishNode(s,"ObjectTypeSpreadProperty"))):(a=this.flowParseObjectPropertyKey(),this.isRelational("<")||this.match(B.parenL)?(d&&this.unexpected(d.start),i.properties.push(this.flowParseObjectTypeMethod(p,h,o,a))):(this.eat(B.question)&&(c=!0),s.key=a,s.value=this.flowParseTypeInitialiser(),s.optional=c,s.static=o,s.variance=d,this.flowObjectTypeSemicolon(),i.properties.push(this.finishNode(s,"ObjectTypeProperty")))),o=!1}this.expect(u);var m=this.finishNode(i,"ObjectTypeAnnotation");return this.state.inType=n,m},se.flowObjectTypeSemicolon=function(){this.eat(B.semi)||this.eat(B.comma)||this.match(B.braceR)||this.match(B.braceBarR)||this.unexpected()},se.flowParseQualifiedTypeIdentifier=function(e,t,r){e=e||this.state.start,t=t||this.state.startLoc;for(var n=r||this.parseIdentifier();this.eat(B.dot);){var i=this.startNodeAt(e,t);i.qualification=n,i.id=this.parseIdentifier(),n=this.finishNode(i,"QualifiedTypeIdentifier")}return n},se.flowParseGenericType=function(e,t,r){var n=this.startNodeAt(e,t);return n.typeParameters=null,n.id=this.flowParseQualifiedTypeIdentifier(e,t,r),this.isRelational("<")&&(n.typeParameters=this.flowParseTypeParameterInstantiation()),this.finishNode(n,"GenericTypeAnnotation")},se.flowParseTypeofType=function(){var e=this.startNode();return this.expect(B._typeof),e.argument=this.flowParsePrimaryType(),this.finishNode(e,"TypeofTypeAnnotation")},se.flowParseTupleType=function(){var e=this.startNode();for(e.types=[],this.expect(B.bracketL);this.state.pos0&&void 0!==arguments[0]?arguments[0]:[],rest:null};!this.match(B.parenR)&&!this.match(B.ellipsis);)e.params.push(this.flowParseFunctionTypeParam()),this.match(B.parenR)||this.expect(B.comma);return this.eat(B.ellipsis)&&(e.rest=this.flowParseFunctionTypeParam()),e},se.flowIdentToTypeAnnotation=function(e,t,r,n){switch(n.name){case"any":return this.finishNode(r,"AnyTypeAnnotation");case"void":return this.finishNode(r,"VoidTypeAnnotation");case"bool":case"boolean":return this.finishNode(r,"BooleanTypeAnnotation");case"mixed":return this.finishNode(r,"MixedTypeAnnotation");case"empty":return this.finishNode(r,"EmptyTypeAnnotation");case"number":return this.finishNode(r,"NumberTypeAnnotation");case"string":return this.finishNode(r,"StringTypeAnnotation");default:return this.flowParseGenericType(e,t,n)}},se.flowParsePrimaryType=function(){var e=this.state.start,t=this.state.startLoc,r=this.startNode(),n=void 0,i=void 0,s=!1,a=this.state.noAnonFunctionType;switch(this.state.type){case B.name:return this.flowIdentToTypeAnnotation(e,t,r,this.parseIdentifier());case B.braceL:return this.flowParseObjectType(!1,!1,!0);case B.braceBarL:return this.flowParseObjectType(!1,!0,!0);case B.bracketL:return this.flowParseTupleType();case B.relational:if("<"===this.state.value)return r.typeParameters=this.flowParseTypeParameterDeclaration(),this.expect(B.parenL),n=this.flowParseFunctionTypeParams(),r.params=n.params,r.rest=n.rest,this.expect(B.parenR),this.expect(B.arrow),r.returnType=this.flowParseType(),this.finishNode(r,"FunctionTypeAnnotation");break;case B.parenL:if(this.next(),!this.match(B.parenR)&&!this.match(B.ellipsis))if(this.match(B.name)){var o=this.lookahead().type;s=o!==B.question&&o!==B.colon}else s=!0;if(s){if(this.state.noAnonFunctionType=!1,i=this.flowParseType(),this.state.noAnonFunctionType=a,this.state.noAnonFunctionType||!(this.match(B.comma)||this.match(B.parenR)&&this.lookahead().type===B.arrow))return this.expect(B.parenR),i;this.eat(B.comma)}return n=i?this.flowParseFunctionTypeParams([this.reinterpretTypeAsFunctionTypeParam(i)]):this.flowParseFunctionTypeParams(),r.params=n.params,r.rest=n.rest,this.expect(B.parenR),this.expect(B.arrow),r.returnType=this.flowParseType(),r.typeParameters=null,this.finishNode(r,"FunctionTypeAnnotation");case B.string:return this.parseLiteral(this.state.value,"StringLiteralTypeAnnotation");case B._true:case B._false:return r.value=this.match(B._true),this.next(),this.finishNode(r,"BooleanLiteralTypeAnnotation");case B.plusMin:if("-"===this.state.value)return this.next(),this.match(B.num)||this.unexpected(null,"Unexpected token, expected number"),this.parseLiteral(-this.state.value,"NumericLiteralTypeAnnotation",r.start,r.loc.start);this.unexpected();case B.num:return this.parseLiteral(this.state.value,"NumericLiteralTypeAnnotation");case B._null:return r.value=this.match(B._null),this.next(),this.finishNode(r,"NullLiteralTypeAnnotation");case B._this:return r.value=this.match(B._this),this.next(),this.finishNode(r,"ThisTypeAnnotation");case B.star:return this.next(),this.finishNode(r,"ExistentialTypeParam");default:if("typeof"===this.state.type.keyword)return this.flowParseTypeofType()}this.unexpected()},se.flowParsePostfixType=function(){for(var e=this.state.start,t=this.state.startLoc,r=this.flowParsePrimaryType();!this.canInsertSemicolon()&&this.match(B.bracketL);){var n=this.startNodeAt(e,t);n.elementType=r,this.expect(B.bracketL),this.expect(B.bracketR),r=this.finishNode(n,"ArrayTypeAnnotation")}return r},se.flowParsePrefixType=function(){var e=this.startNode();return this.eat(B.question)?(e.typeAnnotation=this.flowParsePrefixType(),this.finishNode(e,"NullableTypeAnnotation")):this.flowParsePostfixType()},se.flowParseAnonFunctionWithoutParens=function(){var e=this.flowParsePrefixType();if(!this.state.noAnonFunctionType&&this.eat(B.arrow)){var t=this.startNodeAt(e.start,e.loc.start);return t.params=[this.reinterpretTypeAsFunctionTypeParam(e)],t.rest=null,t.returnType=this.flowParseType(),t.typeParameters=null,this.finishNode(t,"FunctionTypeAnnotation")}return e},se.flowParseIntersectionType=function(){var e=this.startNode();this.eat(B.bitwiseAND);var t=this.flowParseAnonFunctionWithoutParens();for(e.types=[t];this.eat(B.bitwiseAND);)e.types.push(this.flowParseAnonFunctionWithoutParens());return 1===e.types.length?t:this.finishNode(e,"IntersectionTypeAnnotation")},se.flowParseUnionType=function(){var e=this.startNode();this.eat(B.bitwiseOR);var t=this.flowParseIntersectionType();for(e.types=[t];this.eat(B.bitwiseOR);)e.types.push(this.flowParseIntersectionType());return 1===e.types.length?t:this.finishNode(e,"UnionTypeAnnotation")},se.flowParseType=function(){var e=this.state.inType;this.state.inType=!0;var t=this.flowParseUnionType();return this.state.inType=e,t},se.flowParseTypeAnnotation=function(){var e=this.startNode();return e.typeAnnotation=this.flowParseTypeInitialiser(),this.finishNode(e,"TypeAnnotation")},se.flowParseTypeAndPredicateAnnotation=function(){var e=this.startNode(),t=this.flowParseTypeAndPredicateInitialiser();return e.typeAnnotation=t[0],e.predicate=t[1],this.finishNode(e,"TypeAnnotation")},se.flowParseTypeAnnotatableIdentifier=function(){var e=this.flowParseRestrictedIdentifier();return this.match(B.colon)&&(e.typeAnnotation=this.flowParseTypeAnnotation(),this.finishNode(e,e.type)),e},se.typeCastToParameter=function(e){return e.expression.typeAnnotation=e.typeAnnotation,this.finishNodeAt(e.expression,e.expression.type,e.typeAnnotation.end,e.typeAnnotation.loc.end)},se.flowParseVariance=function(){var e=null;return this.match(B.plusMin)&&("+"===this.state.value?e="plus":"-"===this.state.value&&(e="minus"),this.next()),e};var ae=String.fromCodePoint;if(!ae){var oe=String.fromCharCode,ue=Math.floor;ae=function(){var e=[],t=void 0,r=void 0,n=-1,i=arguments.length;if(!i)return"";for(var s="";++n1114111||ue(a)!=a)throw RangeError("Invalid code point: "+a);a<=65535?e.push(a):(t=55296+((a-=65536)>>10),r=a%1024+56320,e.push(t,r)),(n+1==i||e.length>16384)&&(s+=oe.apply(null,e),e.length=0)}return s}}var le=ae,ce={quot:'"',amp:"&",apos:"'",lt:"<",gt:">",nbsp:" ",iexcl:"¡",cent:"¢",pound:"£",curren:"¤",yen:"¥",brvbar:"¦",sect:"§",uml:"¨",copy:"©",ordf:"ª",laquo:"«",not:"¬",shy:"­",reg:"®",macr:"¯",deg:"°",plusmn:"±",sup2:"²",sup3:"³",acute:"´",micro:"µ",para:"¶",middot:"·",cedil:"¸",sup1:"¹",ordm:"º",raquo:"»",frac14:"¼",frac12:"½",frac34:"¾",iquest:"¿",Agrave:"À",Aacute:"Á",Acirc:"Â",Atilde:"Ã",Auml:"Ä",Aring:"Å",AElig:"Æ",Ccedil:"Ç",Egrave:"È",Eacute:"É",Ecirc:"Ê",Euml:"Ë",Igrave:"Ì",Iacute:"Í",Icirc:"Î",Iuml:"Ï",ETH:"Ð",Ntilde:"Ñ",Ograve:"Ò",Oacute:"Ó",Ocirc:"Ô",Otilde:"Õ",Ouml:"Ö",times:"×",Oslash:"Ø",Ugrave:"Ù",Uacute:"Ú",Ucirc:"Û",Uuml:"Ü",Yacute:"Ý",THORN:"Þ",szlig:"ß",agrave:"à",aacute:"á",acirc:"â",atilde:"ã",auml:"ä",aring:"å",aelig:"æ",ccedil:"ç",egrave:"è",eacute:"é",ecirc:"ê",euml:"ë",igrave:"ì",iacute:"í",icirc:"î",iuml:"ï",eth:"ð",ntilde:"ñ",ograve:"ò",oacute:"ó",ocirc:"ô",otilde:"õ",ouml:"ö",divide:"÷",oslash:"ø",ugrave:"ù",uacute:"ú",ucirc:"û",uuml:"ü",yacute:"ý",thorn:"þ",yuml:"ÿ",OElig:"Œ",oelig:"œ",Scaron:"Š",scaron:"š",Yuml:"Ÿ",fnof:"ƒ",circ:"ˆ",tilde:"˜",Alpha:"Α",Beta:"Β",Gamma:"Γ",Delta:"Δ",Epsilon:"Ε",Zeta:"Ζ",Eta:"Η",Theta:"Θ",Iota:"Ι",Kappa:"Κ",Lambda:"Λ",Mu:"Μ",Nu:"Ν",Xi:"Ξ",Omicron:"Ο",Pi:"Π",Rho:"Ρ",Sigma:"Σ",Tau:"Τ",Upsilon:"Υ",Phi:"Φ",Chi:"Χ",Psi:"Ψ",Omega:"Ω",alpha:"α",beta:"β",gamma:"γ",delta:"δ",epsilon:"ε",zeta:"ζ",eta:"η",theta:"θ",iota:"ι",kappa:"κ",lambda:"λ",mu:"μ",nu:"ν",xi:"ξ",omicron:"ο",pi:"π",rho:"ρ",sigmaf:"ς",sigma:"σ",tau:"τ",upsilon:"υ",phi:"φ",chi:"χ",psi:"ψ",omega:"ω",thetasym:"ϑ",upsih:"ϒ",piv:"ϖ",ensp:" ",emsp:" ",thinsp:" ",zwnj:"‌",zwj:"‍",lrm:"‎",rlm:"‏",ndash:"–",mdash:"—",lsquo:"‘",rsquo:"’",sbquo:"‚",ldquo:"“",rdquo:"”",bdquo:"„",dagger:"†",Dagger:"‡",bull:"•",hellip:"…",permil:"‰",prime:"′",Prime:"″",lsaquo:"‹",rsaquo:"›",oline:"‾",frasl:"⁄",euro:"€",image:"ℑ",weierp:"℘",real:"ℜ",trade:"™",alefsym:"ℵ",larr:"←",uarr:"↑",rarr:"→",darr:"↓",harr:"↔",crarr:"↵",lArr:"⇐",uArr:"⇑",rArr:"⇒",dArr:"⇓",hArr:"⇔",forall:"∀",part:"∂",exist:"∃",empty:"∅",nabla:"∇",isin:"∈",notin:"∉",ni:"∋",prod:"∏",sum:"∑",minus:"−",lowast:"∗",radic:"√",prop:"∝",infin:"∞",ang:"∠",and:"∧",or:"∨",cap:"∩",cup:"∪",int:"∫",there4:"∴",sim:"∼",cong:"≅",asymp:"≈",ne:"≠",equiv:"≡",le:"≤",ge:"≥",sub:"⊂",sup:"⊃",nsub:"⊄",sube:"⊆",supe:"⊇",oplus:"⊕",otimes:"⊗",perp:"⊥",sdot:"⋅",lceil:"⌈",rceil:"⌉",lfloor:"⌊",rfloor:"⌋",lang:"〈",rang:"〉",loz:"◊",spades:"♠",clubs:"♣",hearts:"♥",diams:"♦"},pe=/^[\da-fA-F]+$/,he=/^\d+$/;M.j_oTag=new L("...",!0,!0),B.jsxName=new F("jsxName"),B.jsxText=new F("jsxText",{beforeExpr:!0}),B.jsxTagStart=new F("jsxTagStart",{startsExpr:!0}),B.jsxTagEnd=new F("jsxTagEnd"),B.jsxTagStart.updateContext=function(){this.state.context.push(M.j_expr),this.state.context.push(M.j_oTag),this.state.exprAllowed=!1},B.jsxTagEnd.updateContext=function(e){var t=this.state.context.pop();t===M.j_oTag&&e===B.slash||t===M.j_cTag?(this.state.context.pop(),this.state.exprAllowed=this.curContext()===M.j_expr):this.state.exprAllowed=!0};var fe=W.prototype;fe.jsxReadToken=function(){for(var e="",t=this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated JSX contents");var r=this.input.charCodeAt(this.state.pos);switch(r){case 60:case 123:return this.state.pos===this.state.start?60===r&&this.state.exprAllowed?(++this.state.pos,this.finishToken(B.jsxTagStart)):this.getTokenFromCode(r):(e+=this.input.slice(t,this.state.pos),this.finishToken(B.jsxText,e));case 38:e+=this.input.slice(t,this.state.pos),e+=this.jsxReadEntity(),t=this.state.pos;break;default:u(r)?(e+=this.input.slice(t,this.state.pos),e+=this.jsxReadNewLine(!0),t=this.state.pos):++this.state.pos}}},fe.jsxReadNewLine=function(e){var t=this.input.charCodeAt(this.state.pos),r=void 0;return++this.state.pos,13===t&&10===this.input.charCodeAt(this.state.pos)?(++this.state.pos,r=e?"\n":"\r\n"):r=String.fromCharCode(t),++this.state.curLine,this.state.lineStart=this.state.pos,r},fe.jsxReadString=function(e){for(var t="",r=++this.state.pos;;){this.state.pos>=this.input.length&&this.raise(this.state.start,"Unterminated string constant");var n=this.input.charCodeAt(this.state.pos);if(n===e)break;38===n?(t+=this.input.slice(r,this.state.pos),t+=this.jsxReadEntity(),r=this.state.pos):u(n)?(t+=this.input.slice(r,this.state.pos),t+=this.jsxReadNewLine(!1),r=this.state.pos):++this.state.pos}return t+=this.input.slice(r,this.state.pos++),this.finishToken(B.string,t)},fe.jsxReadEntity=function(){for(var e="",t=0,r=void 0,n=this.input[this.state.pos],i=++this.state.pos;this.state.pos")}return r.openingElement=i,r.closingElement=s,r.children=n,this.match(B.relational)&&"<"===this.state.value&&this.raise(this.state.start,"Adjacent JSX elements must be wrapped in an enclosing tag"),this.finishNode(r,"JSXElement")},fe.jsxParseElement=function(){var e=this.state.start,t=this.state.startLoc;return this.next(),this.jsxParseElementAt(e,t)};G.estree=function(e){e.extend("checkDeclaration",function(e){return function(t){f(t)?this.checkDeclaration(t.value):e.call(this,t)}}),e.extend("checkGetterSetterParamCount",function(){return function(e){var t="get"===e.kind?0:1;if(e.value.params.length!==t){var r=e.start;"get"===e.kind?this.raise(r,"getter should have no params"):this.raise(r,"setter should have exactly one param")}}}),e.extend("checkLVal",function(e){return function(t,r,n){var i=this;switch(t.type){case"ObjectPattern":t.properties.forEach(function(e){i.checkLVal("Property"===e.type?e.value:e,r,n,"object destructuring pattern")});break;default:for(var s=arguments.length,a=Array(s>3?s-3:0),o=3;o0)for(var r=e.body.body,n=Array.isArray(r),i=0,r=n?r:r[Symbol.iterator]();;){var s;if(n){if(i>=r.length)break;s=r[i++]}else{if((i=r.next()).done)break;s=i.value}var a=s;if("ExpressionStatement"!==a.type||"Literal"!==a.expression.type)break;if("use strict"===a.expression.value)return!0}return!1}}),e.extend("isValidDirective",function(){return function(e){return!("ExpressionStatement"!==e.type||"Literal"!==e.expression.type||"string"!=typeof e.expression.value||e.expression.extra&&e.expression.extra.parenthesized)}}),e.extend("stmtToDirective",function(e){return function(t){var r=e.call(this,t),n=t.expression.value;return r.value.value=n,r}}),e.extend("parseBlockBody",function(e){return function(t){for(var r=this,n=arguments.length,i=Array(n>1?n-1:0),s=1;s1?n-1:0),s=1;s2?n-2:0),s=2;s=a.length)break;l=a[u++]}else{if((u=a.next()).done)break;l=u.value}var c=l;"get"===c.kind||"set"===c.kind?this.raise(c.key.start,"Object pattern can't contain getter or setter"):c.method?this.raise(c.key.start,"Object pattern can't contain methods"):this.toAssignable(c,r,"object destructuring pattern")}return t}return e.call.apply(e,[this,t,r].concat(i))}})},G.flow=function(e){e.extend("parseFunctionBody",function(e){return function(t,r){return this.match(B.colon)&&!r&&(t.returnType=this.flowParseTypeAndPredicateAnnotation()),e.call(this,t,r)}}),e.extend("parseStatement",function(e){return function(t,r){if(this.state.strict&&this.match(B.name)&&"interface"===this.state.value){var n=this.startNode();return this.next(),this.flowParseInterface(n)}return e.call(this,t,r)}}),e.extend("parseExpressionStatement",function(e){return 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h,f=o(arguments[l++]),d=c?n(f).concat(c(f)):n(f),m=d.length,y=0;m>y;)p.call(f,h=d[y++])&&(r[h]=f[h]);return r}:u},{"./_fails":231,"./_iobject":238,"./_object-gops":256,"./_object-keys":259,"./_object-pie":260,"./_to-object":277}],250:[function(e,t,r){var n=e("./_an-object"),i=e("./_object-dps"),s=e("./_enum-bug-keys"),a=e("./_shared-key")("IE_PROTO"),o=function(){},u=function(){var t,r=e("./_dom-create")("iframe"),n=s.length;for(r.style.display="none",e("./_html").appendChild(r),r.src="javascript:",(t=r.contentWindow.document).open(),t.write(" -``` - -```javascript -(function () { - 'use strict'; - - var forEachAsync = require('forEachAsync').forEachAsync - ; - - // do stuff ... -}()); -``` - - -Node Installation -=== - -```bash -npm install --save forEachAsync@3.x -``` - -API -=== - -**`forEachAsync(array, callback[, thisArg])`** - -Parameters - - * `array` Array of elements to iterate over - * `callback` Function to execute for each element, takes 4 arguments - * `next` the function to call when the current element has been dealt with - * `element` a single element of the aforementioned array - * `index` the index of the current element - * `array` the same array mentioned above - * `thisArg` Object to use as `this` when executing `callback` - -**`forEachAsync#then(done)`** - -Parameters - - * `then` is in the return value of `forEachAsync` and accepts a final `done` callback. - * `done` called after `forEachAsync` is complete, takes no arguments - -Internal API -=== - -`forEachAsync.__BREAK` - -This is used internally for the purposes of the `ArrayAsync` library. - -Please don't `break` stuff; use [`ArrayAsync`](https://github.com/FuturesJS/ArrayAsync)`.someAsync` or [`ArrayAsync`](https://github.com/FuturesJS/ArrayAsync)`.everyAsync` instead. diff --git a/src/js-validator/node_modules/foreachasync/bower.json b/src/js-validator/node_modules/foreachasync/bower.json deleted file mode 100644 index 085a7d9dc..000000000 --- a/src/js-validator/node_modules/foreachasync/bower.json +++ /dev/null @@ -1,27 +0,0 @@ -{ - "name": "forEachAsync", - "main": "forEachAsync.js", - "version": "3.0.0", - "homepage": "https://github.com/FuturesJS/forEachAsync", - "authors": [ - "AJ ONeal " - ], - "description": "A node- and browser-ready async counterpart of Array.prototype.forEach", - "keywords": [ - "futuresjs", - "forEachAsync", - "forEach", - "for", - "async", - "each", - "asynchronous" - ], - "license": "Apache-v2", - "ignore": [ - "**/.*", - "node_modules", - "bower_components", - "test", - "tests" - ] -} diff --git a/src/js-validator/node_modules/foreachasync/forEachAsync.js b/src/js-validator/node_modules/foreachasync/forEachAsync.js deleted file mode 100644 index 8790d7817..000000000 --- a/src/js-validator/node_modules/foreachasync/forEachAsync.js +++ /dev/null @@ -1,35 +0,0 @@ -/*jshint -W054 */ -;(function (exports) { - 'use strict'; - - function forEachAsync(arr, fn, thisArg) { - var dones = [] - , index = -1 - ; - - function next(BREAK, result) { - index += 1; - - if (index === arr.length || BREAK === forEachAsync.__BREAK) { - dones.forEach(function (done) { - done.call(thisArg, result); - }); - return; - } - - fn.call(thisArg, next, arr[index], index, arr); - } - - setTimeout(next, 4); - - return { - then: function (_done) { - dones.push(_done); - return this; - } - }; - } - forEachAsync.__BREAK = {}; - - exports.forEachAsync = forEachAsync; -}('undefined' !== typeof exports && exports || new Function('return this')())); diff --git a/src/js-validator/node_modules/foreachasync/package.json b/src/js-validator/node_modules/foreachasync/package.json deleted file mode 100644 index dfa595b7c..000000000 --- a/src/js-validator/node_modules/foreachasync/package.json +++ /dev/null @@ -1,82 +0,0 @@ -{ - "_args": [ - [ - "foreachasync@^3.0.0", - "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/walk" - ] - ], - "_from": "foreachasync@>=3.0.0 <4.0.0", - "_id": "foreachasync@3.0.0", - "_inCache": true, - "_installable": true, - "_location": "/foreachasync", - "_npmUser": { - "email": "coolaj86@gmail.com", - "name": "coolaj86" - }, - "_npmVersion": "1.3.22", - "_phantomChildren": {}, - "_requested": { - "name": "foreachasync", - "raw": "foreachasync@^3.0.0", - "rawSpec": "^3.0.0", - "scope": null, - "spec": ">=3.0.0 <4.0.0", - "type": "range" - }, - "_requiredBy": [ - "/walk" - ], - "_resolved": "https://registry.npmjs.org/foreachasync/-/foreachasync-3.0.0.tgz", - "_shasum": "5502987dc8714be3392097f32e0071c9dee07cf6", - "_shrinkwrap": null, - "_spec": "foreachasync@^3.0.0", - "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/walk", - "author": { - "email": "coolaj86@gmail.com", - "name": "AJ ONeal", - "url": "http://coolaj86.com/" - }, - "bugs": { - "url": "https://github.com/FuturesJS/forEachAsync/issues" - }, - "dependencies": {}, - "description": "A node- and browser-ready async counterpart of Array.prototype.forEach", - "devDependencies": {}, - "directories": { - "test": "test" - }, - "dist": { - "shasum": "5502987dc8714be3392097f32e0071c9dee07cf6", - "tarball": "https://registry.npmjs.org/foreachasync/-/foreachasync-3.0.0.tgz" - }, - "homepage": "https://github.com/FuturesJS/forEachAsync", - "keywords": [ - "async", - "each", - "for", - "forEach", - "forEachAsync", - "futures", - "futuresjs" - ], - "license": "Apache2", - "main": "forEachAsync.js", - "maintainers": [ - { - "name": "coolaj86", - "email": "coolaj86@gmail.com" - } - ], - "name": "foreachasync", - "optionalDependencies": {}, - "readme": "ERROR: No README data found!", - "repository": { - "type": "git", - "url": "git://github.com/FuturesJS/forEachAsync.git" - }, - "scripts": { - "test": "echo \"Error: no test specified\" && exit 1" - }, - "version": "3.0.0" -} diff --git a/src/js-validator/node_modules/foreachasync/test.js b/src/js-validator/node_modules/foreachasync/test.js deleted file mode 100644 index 7c1cfe952..000000000 --- a/src/js-validator/node_modules/foreachasync/test.js +++ /dev/null @@ -1,29 +0,0 @@ -(function () { - "use strict"; - - var forEachAsync = require('./forEachAsync').forEachAsync - ; - - forEachAsync([0, 500, 70, 200, 400, 100], function (next, element, i, arr) { - // test that array order is as expected - console.log(element, 'is element', i, 'of', arr.length); - - // test that thisness is applied - this[element] = i; - - if (i > 2) { - // test that synchronous callbacks don't mess things up - next(); - } else { - // test asynchronous callbacks - setTimeout(next, element); - } - }, {}).then(function () { - // test that thisness carries - console.log(this); - }).then(function () { - // test then chaining - console.log("now wasn't that nice?"); - }); - -}()); diff --git a/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml b/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml deleted file mode 100644 index ab1762da9..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/.eslintrc.yml +++ /dev/null @@ -1,27 +0,0 @@ -extends: eslint:recommended -env: - node: true - browser: true -rules: - block-scoped-var: 2 - complexity: [2, 13] - curly: [2, multi-or-nest, consistent] - dot-location: [2, property] - dot-notation: 2 - indent: [2, 2, SwitchCase: 1] - linebreak-style: [2, unix] - new-cap: 2 - no-console: [2, allow: [warn, error]] - no-else-return: 2 - no-eq-null: 2 - no-fallthrough: 2 - no-invalid-this: 2 - no-return-assign: 2 - no-shadow: 1 - no-trailing-spaces: 2 - no-use-before-define: [2, nofunc] - quotes: [2, single, avoid-escape] - semi: [2, always] - strict: [2, global] - valid-jsdoc: [2, requireReturn: false] - no-control-regex: 0 diff --git a/src/js-validator/node_modules/json-schema-traverse/.npmignore b/src/js-validator/node_modules/json-schema-traverse/.npmignore deleted file mode 100644 index d09355793..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/.npmignore +++ /dev/null @@ -1,60 +0,0 @@ -# Logs -logs -*.log -npm-debug.log* -yarn-debug.log* -yarn-error.log* - -# Runtime data -pids -*.pid -*.seed -*.pid.lock - -# Directory for instrumented libs generated by jscoverage/JSCover -lib-cov - -# Coverage directory used by tools like istanbul -coverage - -# nyc test coverage -.nyc_output - -# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files) -.grunt - -# Bower dependency directory (https://bower.io/) -bower_components - -# node-waf configuration -.lock-wscript - -# Compiled binary addons (http://nodejs.org/api/addons.html) -build/Release - -# Dependency directories -node_modules/ -jspm_packages/ - -# Typescript v1 declaration files -typings/ - -# Optional npm cache directory -.npm - -# Optional eslint cache -.eslintcache - -# Optional REPL history -.node_repl_history - -# Output of 'npm pack' -*.tgz - -# Yarn Integrity file -.yarn-integrity - -# dotenv environment variables file -.env - -.DS_Store diff --git a/src/js-validator/node_modules/json-schema-traverse/.travis.yml b/src/js-validator/node_modules/json-schema-traverse/.travis.yml deleted file mode 100644 index 7ddce74b8..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/.travis.yml +++ /dev/null @@ -1,8 +0,0 @@ -language: node_js -node_js: - - "4" - - "6" - - "7" - - "8" -after_script: - - coveralls < coverage/lcov.info diff --git a/src/js-validator/node_modules/json-schema-traverse/LICENSE b/src/js-validator/node_modules/json-schema-traverse/LICENSE deleted file mode 100644 index 7f1543566..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/LICENSE +++ /dev/null @@ -1,21 +0,0 @@ -MIT License - -Copyright (c) 2017 Evgeny Poberezkin - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. diff --git a/src/js-validator/node_modules/json-schema-traverse/README.md b/src/js-validator/node_modules/json-schema-traverse/README.md deleted file mode 100644 index d4286a23b..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/README.md +++ /dev/null @@ -1,69 +0,0 @@ -# json-schema-traverse -Traverse JSON Schema passing each schema object to callback - -[![Build Status](https://travis-ci.org/epoberezkin/json-schema-traverse.svg?branch=master)](https://travis-ci.org/epoberezkin/json-schema-traverse) -[![npm version](https://badge.fury.io/js/json-schema-traverse.svg)](https://www.npmjs.com/package/json-schema-traverse) -[![Coverage Status](https://coveralls.io/repos/github/epoberezkin/json-schema-traverse/badge.svg?branch=master)](https://coveralls.io/github/epoberezkin/json-schema-traverse?branch=master) - - -## Install - -``` -npm install json-schema-traverse -``` - - -## Usage - -```javascript -const traverse = require('json-schema-traverse'); -const schema = { - properties: { - foo: {type: 'string'}, - bar: {type: 'integer'} - } -}; - -traverse(schema, cb); -// cb is called 3 times with: -// 1. root schema -// 2. {type: 'string'} -// 3. {type: 'integer'} -``` - -Callback function is called for each schema object (not including draft-06 boolean schemas), including the root schema. Schema references ($ref) are not resolved, they are passed as is. - -Callback is passed these parameters: - -- _schema_: the current schema object -- _JSON pointer_: from the root schema to the current schema object -- _root schema_: the schema passed to `traverse` object -- _parent JSON pointer_: from the root schema to the parent schema object (see below) -- _parent keyword_: the keyword inside which this schema appears (e.g. `properties`, `anyOf`, etc.) -- _parent schema_: not necessarily parent object/array; in the example above the parent schema for `{type: 'string'}` is the root schema -- _index/property_: index or property name in the array/object containing multiple schemas; in the example above for `{type: 'string'}` the property name is `'foo'` - - -## Traverse objects in all unknown keywords - -```javascript -const traverse = require('json-schema-traverse'); -const schema = { - mySchema: { - minimum: 1, - maximum: 2 - } -}; - -traverse(schema, {allKeys: true}, cb); -// cb is called 2 times with: -// 1. root schema -// 2. mySchema -``` - -Without option `allKeys: true` callback will be called only with root schema. - - -## License - -[MIT](https://github.com/epoberezkin/json-schema-traverse/blob/master/LICENSE) diff --git a/src/js-validator/node_modules/json-schema-traverse/index.js b/src/js-validator/node_modules/json-schema-traverse/index.js deleted file mode 100644 index 79eeb6a05..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/index.js +++ /dev/null @@ -1,81 +0,0 @@ -'use strict'; - -var traverse = module.exports = function (schema, opts, cb) { - if (typeof opts == 'function') { - cb = opts; - opts = {}; - } - _traverse(opts, cb, schema, '', schema); -}; - - -traverse.keywords = { - additionalItems: true, - items: true, - contains: true, - additionalProperties: true, - propertyNames: true, - not: true -}; - -traverse.arrayKeywords = { - items: true, - allOf: true, - anyOf: true, - oneOf: true -}; - -traverse.propsKeywords = { - definitions: true, - properties: true, - patternProperties: true, - dependencies: true -}; - -traverse.skipKeywords = { - enum: true, - const: true, - required: true, - maximum: true, - minimum: true, - exclusiveMaximum: true, - exclusiveMinimum: true, - multipleOf: true, - maxLength: true, - minLength: true, - pattern: true, - format: true, - maxItems: true, - minItems: true, - uniqueItems: true, - maxProperties: true, - minProperties: true -}; - - -function _traverse(opts, cb, schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex) { - if (schema && typeof schema == 'object' && !Array.isArray(schema)) { - cb(schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex); - for (var key in schema) { - var sch = schema[key]; - if (Array.isArray(sch)) { - if (key in traverse.arrayKeywords) { - for (var i=0; i=0.3.0 <0.4.0", - "_id": "json-schema-traverse@0.3.1", - "_inCache": true, - "_installable": true, - "_location": "/json-schema-traverse", - "_nodeVersion": "6.9.1", - "_npmOperationalInternal": { - "host": "s3://npm-registry-packages", - "tmp": "tmp/json-schema-traverse-0.3.1.tgz_1498261856588_0.601617609616369" - }, - "_npmUser": { - "email": "e.poberezkin@me.com", - "name": "esp" - }, - "_npmVersion": "3.10.8", - "_phantomChildren": {}, - "_requested": { - "name": "json-schema-traverse", - "raw": "json-schema-traverse@^0.3.0", - "rawSpec": "^0.3.0", - "scope": null, - "spec": ">=0.3.0 <0.4.0", - "type": "range" - }, - "_requiredBy": [ - "/ajv" - ], - "_resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-0.3.1.tgz", - "_shasum": "349a6d44c53a51de89b40805c5d5e59b417d3340", - "_shrinkwrap": null, - "_spec": "json-schema-traverse@^0.3.0", - "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator/node_modules/ajv", - "author": { - "name": "Evgeny Poberezkin" - }, - "bugs": { - "url": "https://github.com/epoberezkin/json-schema-traverse/issues" - }, - "dependencies": {}, - "description": "Traverse JSON Schema passing each schema object to callback", - "devDependencies": { - "coveralls": "^2.13.1", - "eslint": "^3.19.0", - "mocha": "^3.4.2", - "nyc": "^11.0.2", - "pre-commit": "^1.2.2" - }, - "directories": {}, - "dist": { - "shasum": "349a6d44c53a51de89b40805c5d5e59b417d3340", - "tarball": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-0.3.1.tgz" - }, - "gitHead": "f0a6627655525debea519dc8ebb4cf35f3c8e85f", - "homepage": "https://github.com/epoberezkin/json-schema-traverse#readme", - "keywords": [ - "JSON-Schema", - "iterate", - "traverse" - ], - "license": "MIT", - "main": "index.js", - "maintainers": [ - { - "name": "esp", - "email": "e.poberezkin@me.com" - } - ], - "name": "json-schema-traverse", - "nyc": { - "exclude": [ - "**/spec/**", - "node_modules" - ], - "reporter": [ - "lcov", - "text-summary" - ] - }, - "optionalDependencies": {}, - "readme": "ERROR: No README data found!", - "repository": { - "type": "git", - "url": "git+https://github.com/epoberezkin/json-schema-traverse.git" - }, - "scripts": { - "eslint": "eslint index.js spec", - "test": "npm run eslint && nyc npm run test-spec", - "test-spec": "mocha spec -R spec" - }, - "version": "0.3.1" -} diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml b/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml deleted file mode 100644 index 3344da7eb..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/spec/.eslintrc.yml +++ /dev/null @@ -1,6 +0,0 @@ -parserOptions: - ecmaVersion: 6 -globals: - beforeEach: false - describe: false - it: false diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js b/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js deleted file mode 100644 index c51430cdc..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/spec/fixtures/schema.js +++ /dev/null @@ -1,125 +0,0 @@ -'use strict'; - -var schema = { - additionalItems: subschema('additionalItems'), - items: subschema('items'), - contains: subschema('contains'), - additionalProperties: subschema('additionalProperties'), - propertyNames: subschema('propertyNames'), - not: subschema('not'), - allOf: [ - subschema('allOf_0'), - subschema('allOf_1'), - { - items: [ - subschema('items_0'), - subschema('items_1'), - ] - } - ], - anyOf: [ - subschema('anyOf_0'), - subschema('anyOf_1'), - ], - oneOf: [ - subschema('oneOf_0'), - subschema('oneOf_1'), - ], - definitions: { - foo: subschema('definitions_foo'), - bar: subschema('definitions_bar'), - }, - properties: { - foo: subschema('properties_foo'), - bar: subschema('properties_bar'), - }, - patternProperties: { - foo: subschema('patternProperties_foo'), - bar: subschema('patternProperties_bar'), - }, - dependencies: { - foo: subschema('dependencies_foo'), - bar: subschema('dependencies_bar'), - }, - required: ['foo', 'bar'] -}; - - -function subschema(keyword) { - var sch = { - properties: {}, - additionalProperties: false, - additionalItems: false, - anyOf: [ - {format: 'email'}, - {format: 'hostname'} - ] - }; - sch.properties['foo_' + keyword] = {title: 'foo'}; - sch.properties['bar_' + keyword] = {title: 'bar'}; - return sch; -} - - -module.exports = { - schema: schema, - - // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex - expectedCalls: [[schema, '', schema, undefined, undefined, undefined, undefined]] - .concat(expectedCalls('additionalItems')) - .concat(expectedCalls('items')) - .concat(expectedCalls('contains')) - .concat(expectedCalls('additionalProperties')) - .concat(expectedCalls('propertyNames')) - .concat(expectedCalls('not')) - .concat(expectedCallsChild('allOf', 0)) - .concat(expectedCallsChild('allOf', 1)) - .concat([ - [schema.allOf[2], '/allOf/2', schema, '', 'allOf', schema, 2], - [schema.allOf[2].items[0], '/allOf/2/items/0', schema, '/allOf/2', 'items', schema.allOf[2], 0], - [schema.allOf[2].items[0].properties.foo_items_0, '/allOf/2/items/0/properties/foo_items_0', schema, '/allOf/2/items/0', 'properties', schema.allOf[2].items[0], 'foo_items_0'], - [schema.allOf[2].items[0].properties.bar_items_0, '/allOf/2/items/0/properties/bar_items_0', schema, '/allOf/2/items/0', 'properties', schema.allOf[2].items[0], 'bar_items_0'], - [schema.allOf[2].items[0].anyOf[0], '/allOf/2/items/0/anyOf/0', schema, '/allOf/2/items/0', 'anyOf', schema.allOf[2].items[0], 0], - [schema.allOf[2].items[0].anyOf[1], '/allOf/2/items/0/anyOf/1', schema, '/allOf/2/items/0', 'anyOf', schema.allOf[2].items[0], 1], - - [schema.allOf[2].items[1], '/allOf/2/items/1', schema, '/allOf/2', 'items', schema.allOf[2], 1], - [schema.allOf[2].items[1].properties.foo_items_1, '/allOf/2/items/1/properties/foo_items_1', schema, '/allOf/2/items/1', 'properties', schema.allOf[2].items[1], 'foo_items_1'], - [schema.allOf[2].items[1].properties.bar_items_1, '/allOf/2/items/1/properties/bar_items_1', schema, '/allOf/2/items/1', 'properties', schema.allOf[2].items[1], 'bar_items_1'], - [schema.allOf[2].items[1].anyOf[0], '/allOf/2/items/1/anyOf/0', schema, '/allOf/2/items/1', 'anyOf', schema.allOf[2].items[1], 0], - [schema.allOf[2].items[1].anyOf[1], '/allOf/2/items/1/anyOf/1', schema, '/allOf/2/items/1', 'anyOf', schema.allOf[2].items[1], 1] - ]) - .concat(expectedCallsChild('anyOf', 0)) - .concat(expectedCallsChild('anyOf', 1)) - .concat(expectedCallsChild('oneOf', 0)) - .concat(expectedCallsChild('oneOf', 1)) - .concat(expectedCallsChild('definitions', 'foo')) - .concat(expectedCallsChild('definitions', 'bar')) - .concat(expectedCallsChild('properties', 'foo')) - .concat(expectedCallsChild('properties', 'bar')) - .concat(expectedCallsChild('patternProperties', 'foo')) - .concat(expectedCallsChild('patternProperties', 'bar')) - .concat(expectedCallsChild('dependencies', 'foo')) - .concat(expectedCallsChild('dependencies', 'bar')) -}; - - -function expectedCalls(keyword) { - return [ - [schema[keyword], `/${keyword}`, schema, '', keyword, schema, undefined], - [schema[keyword].properties[`foo_${keyword}`], `/${keyword}/properties/foo_${keyword}`, schema, `/${keyword}`, 'properties', schema[keyword], `foo_${keyword}`], - [schema[keyword].properties[`bar_${keyword}`], `/${keyword}/properties/bar_${keyword}`, schema, `/${keyword}`, 'properties', schema[keyword], `bar_${keyword}`], - [schema[keyword].anyOf[0], `/${keyword}/anyOf/0`, schema, `/${keyword}`, 'anyOf', schema[keyword], 0], - [schema[keyword].anyOf[1], `/${keyword}/anyOf/1`, schema, `/${keyword}`, 'anyOf', schema[keyword], 1] - ]; -} - - -function expectedCallsChild(keyword, i) { - return [ - [schema[keyword][i], `/${keyword}/${i}`, schema, '', keyword, schema, i], - [schema[keyword][i].properties[`foo_${keyword}_${i}`], `/${keyword}/${i}/properties/foo_${keyword}_${i}`, schema, `/${keyword}/${i}`, 'properties', schema[keyword][i], `foo_${keyword}_${i}`], - [schema[keyword][i].properties[`bar_${keyword}_${i}`], `/${keyword}/${i}/properties/bar_${keyword}_${i}`, schema, `/${keyword}/${i}`, 'properties', schema[keyword][i], `bar_${keyword}_${i}`], - [schema[keyword][i].anyOf[0], `/${keyword}/${i}/anyOf/0`, schema, `/${keyword}/${i}`, 'anyOf', schema[keyword][i], 0], - [schema[keyword][i].anyOf[1], `/${keyword}/${i}/anyOf/1`, schema, `/${keyword}/${i}`, 'anyOf', schema[keyword][i], 1] - ]; -} diff --git a/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js b/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js deleted file mode 100644 index 7e66143d3..000000000 --- a/src/js-validator/node_modules/json-schema-traverse/spec/index.spec.js +++ /dev/null @@ -1,102 +0,0 @@ -'use strict'; - -var traverse = require('../index'); -var assert = require('assert'); - -describe('json-schema-traverse', function() { - var calls; - - beforeEach(function() { - calls = []; - }); - - it('should traverse all keywords containing schemas recursively', function() { - var schema = require('./fixtures/schema').schema; - var expectedCalls = require('./fixtures/schema').expectedCalls; - - traverse(schema, callback); - assert.deepStrictEqual(calls, expectedCalls); - }); - - - describe('allKeys option', function() { - var schema = { - someObject: { - minimum: 1, - maximum: 2 - } - }; - - it('should traverse objects with allKeys: true option', function() { - // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex - var expectedCalls = [ - [schema, '', schema, undefined, undefined, undefined, undefined], - [schema.someObject, '/someObject', schema, '', 'someObject', schema, undefined] - ]; - - traverse(schema, {allKeys: true}, callback); - assert.deepStrictEqual(calls, expectedCalls); - }); - - - it('should NOT traverse objects with allKeys: false option', function() { - // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex - var expectedCalls = [ - [schema, '', schema, undefined, undefined, undefined, undefined] - ]; - - traverse(schema, {allKeys: false}, callback); - assert.deepStrictEqual(calls, expectedCalls); - }); - - - it('should NOT traverse objects without allKeys option', function() { - // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex - var expectedCalls = [ - [schema, '', schema, undefined, undefined, undefined, undefined] - ]; - - traverse(schema, callback); - assert.deepStrictEqual(calls, expectedCalls); - }); - - - it('should NOT travers objects in standard keywords which value is not a schema', function() { - var schema2 = { - const: {foo: 'bar'}, - enum: ['a', 'b'], - required: ['foo'], - another: { - - }, - patternProperties: {}, // will not traverse - no properties - dependencies: true, // will not traverse - invalid - properties: { - smaller: { - type: 'number' - }, - larger: { - type: 'number', - minimum: {$data: '1/smaller'} - } - } - }; - - // schema, jsonPtr, rootSchema, parentJsonPtr, parentKeyword, parentSchema, keyIndex - var expectedCalls = [ - [schema2, '', schema2, undefined, undefined, undefined, undefined], - [schema2.another, '/another', schema2, '', 'another', schema2, undefined], - [schema2.properties.smaller, '/properties/smaller', schema2, '', 'properties', schema2, 'smaller'], - [schema2.properties.larger, '/properties/larger', schema2, '', 'properties', schema2, 'larger'], - ]; - - traverse(schema2, {allKeys: true}, callback); - assert.deepStrictEqual(calls, expectedCalls); - }); - }); - - - function callback() { - calls.push(Array.prototype.slice.call(arguments)); - } -}); diff --git a/src/js-validator/node_modules/walk/README.md b/src/js-validator/node_modules/walk/README.md deleted file mode 100644 index c323d8a68..000000000 --- a/src/js-validator/node_modules/walk/README.md +++ /dev/null @@ -1,307 +0,0 @@ -node-walk -==== - -nodejs walk implementation. - -This is somewhat of a port python's `os.walk`, but using Node.JS conventions. - - * EventEmitter - * Asynchronous - * Chronological (optionally) - * Built-in flow-control - * includes Synchronous version (same API as Asynchronous) - -As few file descriptors are opened at a time as possible. -This is particularly well suited for single hard disks which are not flash or solid state. - -Installation ----- - -```bash -npm install --save walk -``` - -Getting Started -==== - -```javascript -(function () { - "use strict"; - - var walk = require('walk') - , fs = require('fs') - , walker - ; - - walker = walk.walk("/tmp", options); - - walker.on("file", function (root, fileStats, next) { - fs.readFile(fileStats.name, function () { - // doStuff - next(); - }); - }); - - walker.on("errors", function (root, nodeStatsArray, next) { - next(); - }); - - walker.on("end", function () { - console.log("all done"); - }); -}()); -``` - -Common Events ------ - -All single event callbacks are in the form of `function (root, stat, next) {}`. - -All multiple event callbacks callbacks are in the form of `function (root, stats, next) {}`, except **names** which is an array of strings. - -All **error** event callbacks are in the form `function (root, stat/stats, next) {}`. -**`stat.error`** contains the error. - -* `names` -* `directory` -* `directories` -* `file` -* `files` -* `end` -* `nodeError` (`stat` failed) -* `directoryError` (`stat` succedded, but `readdir` failed) -* `errors` (a collection of any errors encountered) - - -A typical `stat` event looks like this: - -```javascript -{ dev: 16777223, - mode: 33188, - nlink: 1, - uid: 501, - gid: 20, - rdev: 0, - blksize: 4096, - ino: 49868100, - size: 5617, - blocks: 16, - atime: Mon Jan 05 2015 18:18:10 GMT-0700 (MST), - mtime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), - ctime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), - birthtime: Thu Sep 25 2014 21:21:28 GMT-0600 (MDT), - name: 'README.md', - type: 'file' } -``` - -Advanced Example -==== - -Both Asynchronous and Synchronous versions are provided. - -```javascript -(function () { - "use strict"; - - var walk = require('walk') - , fs = require('fs') - , options - , walker - ; - - options = { - followLinks: false - // directories with these keys will be skipped - , filters: ["Temp", "_Temp"] - }; - - walker = walk.walk("/tmp", options); - - // OR - // walker = walk.walkSync("/tmp", options); - - walker.on("names", function (root, nodeNamesArray) { - nodeNamesArray.sort(function (a, b) { - if (a > b) return 1; - if (a < b) return -1; - return 0; - }); - }); - - walker.on("directories", function (root, dirStatsArray, next) { - // dirStatsArray is an array of `stat` objects with the additional attributes - // * type - // * error - // * name - - next(); - }); - - walker.on("file", function (root, fileStats, next) { - fs.readFile(fileStats.name, function () { - // doStuff - next(); - }); - }); - - walker.on("errors", function (root, nodeStatsArray, next) { - next(); - }); - - walker.on("end", function () { - console.log("all done"); - }); -}()); -``` - -### Sync - -Note: You **can't use EventEmitter** if you want truly synchronous walker -(although it's synchronous under the hood, it appears not to be due to the use of `process.nextTick()`). - -Instead **you must use `options.listeners`** for truly synchronous walker. - -Although the sync version uses all of the `fs.readSync`, `fs.readdirSync`, and other sync methods, -I don't think I can prevent the `process.nextTick()` that `EventEmitter` calls. - -```javascript -(function () { - "use strict"; - - var walk = require('walk') - , fs = require('fs') - , options - , walker - ; - - // To be truly synchronous in the emitter and maintain a compatible api, - // the listeners must be listed before the object is created - options = { - listeners: { - names: function (root, nodeNamesArray) { - nodeNamesArray.sort(function (a, b) { - if (a > b) return 1; - if (a < b) return -1; - return 0; - }); - } - , directories: function (root, dirStatsArray, next) { - // dirStatsArray is an array of `stat` objects with the additional attributes - // * type - // * error - // * name - - next(); - } - , file: function (root, fileStats, next) { - fs.readFile(fileStats.name, function () { - // doStuff - next(); - }); - } - , errors: function (root, nodeStatsArray, next) { - next(); - } - } - }; - - walker = walk.walkSync("/tmp", options); - - console.log("all done"); -}()); -``` - -API -==== - -Emitted Values - - * `on('XYZ', function(root, stats, next) {})` - - * `root` - the containing the files to be inspected - * *stats[Array]* - a single `stats` object or an array with some added attributes - * type - 'file', 'directory', etc - * error - * name - the name of the file, dir, etc - * next - no more files will be read until this is called - -Single Events - fired immediately - - * `end` - No files, dirs, etc left to inspect - - * `directoryError` - Error when `fstat` succeeded, but reading path failed (Probably due to permissions). - * `nodeError` - Error `fstat` did not succeeded. - * `node` - a `stats` object for a node of any type - * `file` - includes links when `followLinks` is `true` - * `directory` - **NOTE** you could get a recursive loop if `followLinks` and a directory links to its parent - * `symbolicLink` - always empty when `followLinks` is `true` - * `blockDevice` - * `characterDevice` - * `FIFO` - * `socket` - -Events with Array Arguments - fired after all files in the dir have been `stat`ed - - * `names` - before any `stat` takes place. Useful for sorting and filtering. - * Note: the array is an array of `string`s, not `stat` objects - * Note: the `next` argument is a `noop` - - * `errors` - errors encountered by `fs.stat` when reading ndes in a directory - * `nodes` - an array of `stats` of any type - * `files` - * `directories` - modification of this array - sorting, removing, etc - affects traversal - * `symbolicLinks` - * `blockDevices` - * `characterDevices` - * `FIFOs` - * `sockets` - -**Warning** beware of infinite loops when `followLinks` is true (using `walk-recurse` varient). - -Comparisons -==== - -Tested on my `/System` containing 59,490 (+ self) directories (and lots of files). -The size of the text output was 6mb. - -`find`: - time bash -c "find /System -type d | wc" - 59491 97935 6262916 - - real 2m27.114s - user 0m1.193s - sys 0m14.859s - -`find.js`: - -Note that `find.js` omits the start directory - - time bash -c "node examples/find.js /System -type d | wc" - 59490 97934 6262908 - - # Test 1 - real 2m52.273s - user 0m20.374s - sys 0m27.800s - - # Test 2 - real 2m23.725s - user 0m18.019s - sys 0m23.202s - - # Test 3 - real 2m50.077s - user 0m17.661s - sys 0m24.008s - -In conclusion node.js asynchronous walk is much slower than regular "find". - -LICENSE -=== - -`node-walk` is available under the following licenses: - - * MIT - * Apache 2 - -Copyright 2011 - Present AJ ONeal diff --git a/src/js-validator/node_modules/walk/lib/node-type-emitter.js b/src/js-validator/node_modules/walk/lib/node-type-emitter.js deleted file mode 100644 index 9a1e01c8b..000000000 --- a/src/js-validator/node_modules/walk/lib/node-type-emitter.js +++ /dev/null @@ -1,89 +0,0 @@ -/*jshint strict:true node:true es5:true onevar:true laxcomma:true laxbreak:true*/ -(function () { - "use strict"; - - // "FIFO" isn't easy to convert to camelCase and back reliably - var isFnodeTypes = [ - "isFile", "isDirectory", "isSymbolicLink", "isBlockDevice", "isCharacterDevice", "isFIFO", "isSocket" - ], - fnodeTypes = [ - "file", "directory", "symbolicLink", "blockDevice", "characterDevice", "FIFO", "socket" - ], - fnodeTypesPlural = [ - "files", "directories", "symbolicLinks", "blockDevices", "characterDevices", "FIFOs", "sockets" - ]; - - - // - function createNodeGroups() { - var nodeGroups = {}; - fnodeTypesPlural.concat("nodes", "errors").forEach(function (fnodeTypePlural) { - nodeGroups[fnodeTypePlural] = []; - }); - return nodeGroups; - } - - - // Determine each file node's type - // - function sortFnodesByType(stat, fnodes) { - var i, isType; - - for (i = 0; i < isFnodeTypes.length; i += 1) { - isType = isFnodeTypes[i]; - if (stat[isType]()) { - stat.type = fnodeTypes[i]; - fnodes[fnodeTypesPlural[i]].push(stat); - return; - } - } - } - - - // Get the current number of listeners (which may change) - // Emit events to each listener - // Wait for all listeners to `next()` before continueing - // (in theory this may avoid disk thrashing) - function emitSingleEvents(emitter, path, stats, next, self) { - var num = 1 + emitter.listeners(stats.type).length + emitter.listeners("node").length; - - function nextWhenReady() { - num -= 1; - if (0 === num) { next.call(self); } - } - - emitter.emit(stats.type, path, stats, nextWhenReady); - emitter.emit("node", path, stats, nextWhenReady); - nextWhenReady(); - } - - - // Since the risk for disk thrashing among anything - // other than files is relatively low, all types are - // emitted at once, but all must complete before advancing - function emitPluralEvents(emitter, path, nodes, next, self) { - var num = 1; - - function nextWhenReady() { - num -= 1; - if (0 === num) { next.call(self); } - } - - fnodeTypesPlural.concat(["nodes", "errors"]).forEach(function (fnodeType) { - if (0 === nodes[fnodeType].length) { return; } - num += emitter.listeners(fnodeType).length; - emitter.emit(fnodeType, path, nodes[fnodeType], nextWhenReady); - }); - nextWhenReady(); - } - - module.exports = { - emitNodeType: emitSingleEvents, - emitNodeTypeGroups: emitPluralEvents, - isFnodeTypes: isFnodeTypes, - fnodeTypes: fnodeTypes, - fnodeTypesPlural: fnodeTypesPlural, - sortFnodesByType: sortFnodesByType, - createNodeGroups: createNodeGroups - }; -}()); diff --git a/src/js-validator/node_modules/walk/lib/walk-async-only.js b/src/js-validator/node_modules/walk/lib/walk-async-only.js deleted file mode 100644 index 41b30ca53..000000000 --- a/src/js-validator/node_modules/walk/lib/walk-async-only.js +++ /dev/null @@ -1,93 +0,0 @@ -(function () { - "use strict" - - // Array.prototype.forEachAsync(next, item, i, collection) - require('futures/forEachAsync'); - - function noop() {} - - var fs = require('fs'), - path = require('path'), - EventEmitter = require('events').EventEmitter, - TypeEmitter = require('./node-type-emitter'); - - // 2010-11-25 jorge@jorgechamorro.com - function create(pathname, cb) { - var emitter = new EventEmitter(), - q = [], - queue = [q], - curpath; - - function walk() { - fs.readdir(curpath, function(err, files) { - if (err) { - emitter.emit('directoryError', curpath, { error: err }, noop); - //emitter.emit('error', curpath, { error: err }); - } - // XXX bug was here. next() was omitted - if (!files || 0 == files.length) { - return next(); - } - - var fnodeGroups = TypeEmitter.createNodeGroups(); - - // TODO could allow user to selectively stat - // and don't stat if there are no stat listeners - emitter.emit('names', curpath, files, noop); - files.forEachAsync(function (cont, file) { - emitter.emit('name', curpath, file, noop); - fs.lstat(curpath + path.sep + file, function (err, stat) { - stat = stat || {}; - stat.name = file; - if (err) { - stat.error = err; - //emitter.emit('error', curpath, stat); - emitter.emit('nodeError', curpath, stat, noop); - fnodeGroups.errors.push(stat); - cont(); - } else { - TypeEmitter.sortFnodesByType(stat, fnodeGroups); - TypeEmitter.emitNodeType(emitter, curpath, stat, cont); - } - }); - }).then(function () { - if (fnodeGroups.errors.length) { - emitter.emit('errors', curpath, fnodeGroups.errors, noop); - } - TypeEmitter.emitNodeTypeGroups(emitter, curpath, fnodeGroups, function () { - var dirs = []; - fnodeGroups.directories.forEach(function (stat) { - dirs.push(stat.name); - }); - dirs.forEach(fullPath); - queue.push(q = dirs); - next(); - }); - }); - }); - } - - function next() { - if (q.length) { - curpath = q.pop(); - return walk(); - } - if (queue.length -= 1) { - q = queue[queue.length-1]; - return next(); - } - emitter.emit('end'); - } - - function fullPath(v,i,o) { - o[i]= [curpath, path.sep, v].join(''); - } - - curpath = pathname; - walk(); - - return emitter; - } - - module.exports = create; -}()); diff --git a/src/js-validator/node_modules/walk/lib/walk.js b/src/js-validator/node_modules/walk/lib/walk.js deleted file mode 100644 index 93c40ed26..000000000 --- a/src/js-validator/node_modules/walk/lib/walk.js +++ /dev/null @@ -1,301 +0,0 @@ -// Adapted from work by jorge@jorgechamorro.com on 2010-11-25 -(function () { - "use strict"; - - function noop() {} - - var fs = require('fs') - , forEachAsync = require('foreachasync').forEachAsync - , EventEmitter = require('events').EventEmitter - , TypeEmitter = require('./node-type-emitter') - , util = require('util') - , path = require('path') - ; - - function appendToDirs(stat) { - /*jshint validthis:true*/ - this.push(stat.name); - } - - function wFilesHandlerWrapper(items) { - /*jshint validthis:true*/ - this._wFilesHandler(noop, items); - } - - function Walker(pathname, options, sync) { - EventEmitter.call(this); - - var me = this - ; - - options = options || {}; - me._wStat = options.followLinks && 'stat' || 'lstat'; - me._wStatSync = me._wStat + 'Sync'; - me._wsync = sync; - me._wq = []; - me._wqueue = [me._wq]; - me._wcurpath = undefined; - me._wfilters = options.filters || []; - me._wfirstrun = true; - me._wcurpath = pathname; - - if (me._wsync) { - //console.log('_walkSync'); - me._wWalk = me._wWalkSync; - } else { - //console.log('_walkASync'); - me._wWalk = me._wWalkAsync; - } - - options.listeners = options.listeners || {}; - Object.keys(options.listeners).forEach(function (event) { - var callbacks = options.listeners[event] - ; - - if ('function' === typeof callbacks) { - callbacks = [callbacks]; - } - - callbacks.forEach(function (callback) { - me.on(event, callback); - }); - }); - - me._wWalk(); - } - - // Inherits must come before prototype additions - util.inherits(Walker, EventEmitter); - - Walker.prototype._wLstatHandler = function (err, stat) { - var me = this - ; - - stat = stat || {}; - stat.name = me._wcurfile; - - if (err) { - stat.error = err; - //me.emit('error', curpath, stat); - // TODO v3.0 (don't noop the next if there are listeners) - me.emit('nodeError', me._wcurpath, stat, noop); - me._wfnodegroups.errors.push(stat); - me._wCurFileCallback(); - } else { - TypeEmitter.sortFnodesByType(stat, me._wfnodegroups); - // NOTE: wCurFileCallback doesn't need thisness, so this is okay - TypeEmitter.emitNodeType(me, me._wcurpath, stat, me._wCurFileCallback, me); - } - }; - Walker.prototype._wFilesHandler = function (cont, file) { - var statPath - , me = this - ; - - - me._wcurfile = file; - me._wCurFileCallback = cont; - me.emit('name', me._wcurpath, file, noop); - - statPath = me._wcurpath + path.sep + file; - - if (!me._wsync) { - // TODO how to remove this anony? - fs[me._wStat](statPath, function (err, stat) { - me._wLstatHandler(err, stat); - }); - return; - } - - try { - me._wLstatHandler(null, fs[me._wStatSync](statPath)); - } catch(e) { - me._wLstatHandler(e); - } - }; - Walker.prototype._wOnEmitDone = function () { - var me = this - , dirs = [] - ; - - me._wfnodegroups.directories.forEach(appendToDirs, dirs); - dirs.forEach(me._wJoinPath, me); - me._wqueue.push(me._wq = dirs); - me._wNext(); - }; - Walker.prototype._wPostFilesHandler = function () { - var me = this - ; - - if (me._wfnodegroups.errors.length) { - // TODO v3.0 (don't noop the next) - // .errors is an array of stats with { name: name, error: error } - me.emit('errors', me._wcurpath, me._wfnodegroups.errors, noop); - } - // XXX emitNodeTypes still needs refactor - TypeEmitter.emitNodeTypeGroups(me, me._wcurpath, me._wfnodegroups, me._wOnEmitDone, me); - }; - Walker.prototype._wReadFiles = function () { - var me = this - ; - - if (!me._wcurfiles || 0 === me._wcurfiles.length) { - return me._wNext(); - } - - // TODO could allow user to selectively stat - // and don't stat if there are no stat listeners - me.emit('names', me._wcurpath, me._wcurfiles, noop); - - if (me._wsync) { - me._wcurfiles.forEach(wFilesHandlerWrapper, me); - me._wPostFilesHandler(); - } else { - forEachAsync(me._wcurfiles, me._wFilesHandler, me).then(me._wPostFilesHandler); - } - }; - Walker.prototype._wReaddirHandler = function (err, files) { - var fnodeGroups = TypeEmitter.createNodeGroups() - , me = this - , parent - , child - ; - - me._wfnodegroups = fnodeGroups; - me._wcurfiles = files; - - // no error, great - if (!err) { - me._wReadFiles(); - return; - } - - // TODO path.sep - me._wcurpath = me._wcurpath.replace(/\/$/, ''); - - // error? not first run? => directory error - if (!me._wfirstrun) { - // TODO v3.0 (don't noop the next if there are listeners) - me.emit('directoryError', me._wcurpath, { error: err }, noop); - // TODO v3.0 - //me.emit('directoryError', me._wcurpath.replace(/^(.*)\/.*$/, '$1'), { name: me._wcurpath.replace(/^.*\/(.*)/, '$1'), error: err }, noop); - me._wReadFiles(); - return; - } - - // error? first run? => maybe a file, maybe a true error - me._wfirstrun = false; - - // readdir failed (might be a file), try a stat on the parent - parent = me._wcurpath.replace(/^(.*)\/.*$/, '$1'); - fs[me._wStat](parent, function (e, stat) { - - if (stat) { - // success - // now try stat on this as a child of the parent directory - child = me._wcurpath.replace(/^.*\/(.*)$/, '$1'); - me._wcurfiles = [child]; - me._wcurpath = parent; - } else { - // TODO v3.0 - //me.emit('directoryError', me._wcurpath.replace(/^(.*)\/.*$/, '$1'), { name: me._wcurpath.replace(/^.*\/(.*)/, '$1'), error: err }, noop); - // TODO v3.0 (don't noop the next) - // the original readdir error, not the parent stat error - me.emit('nodeError', me._wcurpath, { error: err }, noop); - } - - me._wReadFiles(); - }); - }; - Walker.prototype._wFilter = function () { - var me = this - , exclude - ; - - // Stop directories that contain filter keywords - // from continuing through the walk process - exclude = me._wfilters.some(function (filter) { - if (me._wcurpath.match(filter)) { - return true; - } - }); - - return exclude; - }; - Walker.prototype._wWalkSync = function () { - //console.log('walkSync'); - var err - , files - , me = this - ; - - try { - files = fs.readdirSync(me._wcurpath); - } catch(e) { - err = e; - } - - me._wReaddirHandler(err, files); - }; - Walker.prototype._wWalkAsync = function () { - //console.log('walkAsync'); - var me = this - ; - - // TODO how to remove this anony? - fs.readdir(me._wcurpath, function (err, files) { - me._wReaddirHandler(err, files); - }); - }; - Walker.prototype._wNext = function () { - var me = this - ; - - if (me._paused) { - return; - } - if (me._wq.length) { - me._wcurpath = me._wq.pop(); - while (me._wq.length && me._wFilter()) { - me._wcurpath = me._wq.pop(); - } - if (me._wcurpath && !me._wFilter()) { - me._wWalk(); - } else { - me._wNext(); - } - return; - } - me._wqueue.length -= 1; - if (me._wqueue.length) { - me._wq = me._wqueue[me._wqueue.length - 1]; - return me._wNext(); - } - - // To not break compatibility - //process.nextTick(function () { - me.emit('end'); - //}); - }; - Walker.prototype._wJoinPath = function (v, i, o) { - var me = this - ; - - o[i] = [me._wcurpath, path.sep, v].join(''); - }; - Walker.prototype.pause = function () { - this._paused = true; - }; - Walker.prototype.resume = function () { - this._paused = false; - this._wNext(); - }; - - exports.walk = function (path, opts) { - return new Walker(path, opts, false); - }; - - exports.walkSync = function (path, opts) { - return new Walker(path, opts, true); - }; -}()); diff --git a/src/js-validator/node_modules/walk/package.json b/src/js-validator/node_modules/walk/package.json deleted file mode 100644 index 113f5a645..000000000 --- a/src/js-validator/node_modules/walk/package.json +++ /dev/null @@ -1,98 +0,0 @@ -{ - "_args": [ - [ - "walk", - "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator" - ] - ], - "_from": "walk@latest", - "_id": "walk@2.3.9", - "_inCache": true, - "_installable": true, - "_location": "/walk", - "_npmUser": { - "email": "coolaj86@gmail.com", - "name": "coolaj86" - }, - "_npmVersion": "2.0.0", - "_phantomChildren": {}, - "_requested": { - "name": "walk", - "raw": "walk", - "rawSpec": "", - "scope": null, - "spec": "latest", - "type": "tag" - }, - "_requiredBy": [ - "#USER" - ], - "_resolved": "https://registry.npmjs.org/walk/-/walk-2.3.9.tgz", - "_shasum": "31b4db6678f2ae01c39ea9fb8725a9031e558a7b", - "_shrinkwrap": null, - "_spec": "walk", - "_where": "/home/dwelter/CodeCellar/HCA/metadata-schema/src/js-validator", - "author": { - "email": "coolaj86@gmail.com", - "name": "AJ ONeal" - }, - "bugs": { - "url": "https://github.com/coolaj86/node-walk/issues" - }, - "contributors": [], - "dependencies": { - "foreachasync": "^3.0.0" - }, - "description": "A node port of python's os.walk", - "devDependencies": {}, - "directories": { - "example": "examples", - "test": "test" - }, - "dist": { - "shasum": "31b4db6678f2ae01c39ea9fb8725a9031e558a7b", - "tarball": "https://registry.npmjs.org/walk/-/walk-2.3.9.tgz" - }, - "files": [ - "lib" - ], - "gitHead": "cccd13e0fc6847443e9dd8cab468a27213b068cf", - "homepage": "https://github.com/coolaj86/node-walk", - "keywords": [ - "fs", - "os", - "sys", - "util", - "walk", - "walkSync" - ], - "lib": ".", - "licenses": [ - { - "type": "MIT", - "url": "http://www.opensource.org/licenses/mit-license.php" - }, - { - "type": "Apache2", - "url": "http://opensource.org/licenses/apache2.0.php" - } - ], - "main": "./lib/walk.js", - "maintainers": [ - { - "name": "coolaj86", - "email": "coolaj86@gmail.com" - } - ], - "name": "walk", - "optionalDependencies": {}, - "readme": "ERROR: No README data found!", - "repository": { - "url": "git://github.com/coolaj86/node-walk.git" - }, - "scripts": { - "test": "./test/walk-test.sh" - }, - "url": "http://github.com/coolaj86/node-walk", - "version": "2.3.9" -} From 06d5388799f83eb59cd299858be6d29c1b39fff1 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Tue, 7 Nov 2017 13:33:22 +0000 Subject: [PATCH 114/128] Clarified comments in validation testing python --- src/sample_test.py | 14 ++++++++------ src/simple_test.py | 11 +++++++---- 2 files changed, 15 insertions(+), 10 deletions(-) diff --git a/src/sample_test.py b/src/sample_test.py index 56bcb5217..23660c6ef 100644 --- a/src/sample_test.py +++ b/src/sample_test.py @@ -3,8 +3,10 @@ import sys import subprocess -# Simple first test - are json files in json_schema folder -# valid json schema docs? +""" +Sample test: Are JSON files that are in the +schema_test* folders valid JSON schema? +""" # Flag for tracking the exit status of validate() calls status_flag = True @@ -29,7 +31,7 @@ if not validate(sv, sfo1): status_flag = False -print('\nValidating schema_tests/sample/fail/sample-test-current.json (This should fail)') +print('\nValidating schema_tests/sample/fail/sample-test-current.json\n(This should fail)') sf1 = get_json_from_file('../schema_tests/sample/fail/sample-test-current.json') # This should fail. If it fails, keep status_flag = True if validate(sv, sf1): @@ -45,8 +47,8 @@ if not validate(sample_bundle_validator, sample_bundle_file): status_flag = False -# If any of the validate() calls fail, set exit status to 1 -# Failed validate() calls on things that are supposed to fail will not affect exit status -# Without the following line, failed validate() will result in exit status 0, which is not desirable +# If any of the validate() calls fail, set exit status to 1. +# Failed validate() calls on things that are supposed to fail will not affect exit status. +# Without the following line, failed validate() will result in exit status 0, which is not desirable. if not status_flag: sys.exit(1) diff --git a/src/simple_test.py b/src/simple_test.py index acc1215e6..c9149a089 100644 --- a/src/simple_test.py +++ b/src/simple_test.py @@ -1,12 +1,15 @@ from schema_test_suite import get_validator import glob -# Simple first test - are json files in json_schema folder -# valid json schema docs? +""" +Simple test: Are JSON schemas that are in the +json_schema folder valid JSON schema? +Specific schema tests to follow. +""" +# a*.json skipped for now schemas = glob.glob('../json_schema/' +"[b-z]*.json") + for s in schemas: print("Checking whether %s is a valid json schema" % s) get_validator(s) - -# Specific schema tests to follow . \ No newline at end of file From d483f7df240106eea9ab3c74873f878b9f65ca0b Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 8 Nov 2017 09:58:45 +0000 Subject: [PATCH 115/128] Added type to white_list_file field in barcode.json --- json_schema/barcode.json | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/json_schema/barcode.json b/json_schema/barcode.json index 035b69b8c..c062fb110 100644 --- a/json_schema/barcode.json +++ b/json_schema/barcode.json @@ -1,10 +1,10 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "This object describes where a particular type of barcode is in a read", + "description": "This object describes where a particular type of barcode is in a read.", "properties": { "offset": { - "description": "Offset in read of barcode. 0 for beginning of read", + "description": "Offset in read of barcode. 0 for beginning of read.", "maximum": 50, "minimum": 0, "type": "integer" @@ -16,7 +16,7 @@ "type": "integer" }, "read": { - "description": "Which read barcode is found on. Is either \"read1,\" \"read2,\" \"reads\" or \"index\" or some TBD field of seq.lane.", + "description": "Which read barcode is found on. Should be one of read1, read2, reads, or index, or some TBD field of seq.lane.", "enum": [ "r1", "r2", @@ -24,7 +24,8 @@ ] }, "white_list_file": { - "description": "Name of file containing legitimate bar code sequences. Unused for randomly generated barcodes." + "description": "Name of file containing legitimate barcode sequences. Unused for randomly generated barcodes.", + "type": "string" } }, "required": [ From 0485a7cd6bd0ab641721242a64e933a3fef1ce88 Mon Sep 17 00:00:00 2001 From: Rolando Fernandez Date: Wed, 8 Nov 2017 10:51:21 +0000 Subject: [PATCH 116/128] added ajv to package.json --- src/js-validator/package.json | 4 ++-- src/js-validator/test/validate_json.js | 10 +++++++--- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/src/js-validator/package.json b/src/js-validator/package.json index 86ebe954c..18853aeb2 100644 --- a/src/js-validator/package.json +++ b/src/js-validator/package.json @@ -2,9 +2,9 @@ "name": "js-validator", "version": "0.0.1", "dependencies": { - + "ajv": "^5.3.0", + "package.json": "^2.0.1" }, - "scripts": { "test": "mocha" } diff --git a/src/js-validator/test/validate_json.js b/src/js-validator/test/validate_json.js index b5c9ab9f2..7681c618b 100644 --- a/src/js-validator/test/validate_json.js +++ b/src/js-validator/test/validate_json.js @@ -84,8 +84,8 @@ function getCompiledSchemas(){ } -var donor = require("../../../schema_tests/sample/donor_test1.json"); -var sample = require("../../../schema_tests/sample/sample-test-current.json"); +var donor = require("../../../schema_tests/sample/pass/donor_test1.json"); +var sample = require("../../../schema_tests/sample/fail/sample-test-current.json"); var validate = getCompiledSchemas(); @@ -96,5 +96,9 @@ function test(data) { var valid = validate(data); if (valid) console.log('Valid!'); else console.log('Invalid: ' + ajv.errorsText(validate.errors)); + + validate.errors.forEach((error) =>{ + console.log(error); + }); -} \ No newline at end of file +} From 93648d94ab8ab835bd333cfd3e9cf361676366e2 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 8 Nov 2017 15:25:18 +0000 Subject: [PATCH 117/128] Beautified rna and single_cell schema descriptions --- json_schema/rna.json | 20 ++++++++++---------- json_schema/single_cell.json | 4 ++-- 2 files changed, 12 insertions(+), 12 deletions(-) diff --git a/json_schema/rna.json b/json_schema/rna.json index 316881b89..a8c77821b 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -2,25 +2,25 @@ "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, "definitions": {}, - "description": "Information about how RNA was converted to DNA or otherwise prepared for assay", + "description": "Information about how RNA was converted to cDNA for sequencing.", "properties": { "end_bias": { - "description": "\"3' bias\" or \"5' bias\" or \"3' end\" or \"5' end\" or \"none\"", + "description": "The type of end bias the library has. Must be one of 3' bias, 5' bias, 3' end, 5' end, or none.", "enum": [ "three_prime_end", "three_prime_bias", "five_prime_end", "five_prime_bias", - "full_transcript" + "none" ] }, "library_construction": { - "description": "Something like smart-seq, true-seq.", + "description": "The general approach for sequencing library construction. e.g. Smart-seq, Drop-seq, 10x.", "enum": [ "unknown", "CEL-seq", - "SMARTer Ultra Low RNA Kit", - "modified smart-seq2", + "SMARTer Ultra Low RNA Kit", + "modified smart-seq2", "smart-seq2", "QUARTZ-Seq", "10x_v2", @@ -34,20 +34,20 @@ "type": "string" }, "primer": { - "description": "Primer for cDNA synthesis from RNA. Usually random or poly-dt", + "description": "Primer used for cDNA synthesis from RNA. Must be either poly-dT or random.", "enum": [ - "poly-dt", + "poly-dT", "random" ] }, "spike_in": { - "description": "Name of RNA spike in kit. Usually ERCC", + "description": "Name of RNA spike-in kit. e.g. ERCC.", "enum": [ "ERCC" ] }, "spike_in_dilution": { - "description": "Dilution of RNA spike in", + "description": "Dilution of RNA spike-in.", "maximum": 1000000, "minimum": 1, "type": "integer" diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 3e98ff0fd..b99e9deef 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -4,11 +4,11 @@ "description": "Contains information on single cell aspects of an assay.", "properties": { "barcode": { - "description": "Information about cell identifier barcode", + "description": "Information about cell identifier barcode.", "$ref": "barcode.json" }, "cell_handling": { - "description": "How cells are separated. FACS, drop-seq, tenX_v2, Fluidigm C1, etc", + "description": "How cells are separated. e.g. FACS, drop-seq, 10X_v2, Fluidigm C1.", "enum": [ "10x_v2", "FACS", From 1e5614885817efb07980c0c0f3ba04dab6e62e8e Mon Sep 17 00:00:00 2001 From: Rolando Fernandez Date: Thu, 9 Nov 2017 12:02:24 +0000 Subject: [PATCH 118/128] creating validator function with specified schema for each test run --- src/js-validator/test/validate_json.js | 120 +++++++++++-------------- 1 file changed, 54 insertions(+), 66 deletions(-) diff --git a/src/js-validator/test/validate_json.js b/src/js-validator/test/validate_json.js index 7681c618b..3e5bb3c11 100644 --- a/src/js-validator/test/validate_json.js +++ b/src/js-validator/test/validate_json.js @@ -1,30 +1,9 @@ -var Ajv = require('ajv'); -var ajv = new Ajv({allErrors: true, - verbose : true, - meta: false, // optional, to prevent adding draft-06 meta-schema - extendRefs: true, // optional, current default is to 'fail', spec behaviour is to 'ignore' - unknownFormats: 'ignore', // optional, current default is true (fail) -}); - -var metaSchema = require('ajv/lib/refs/json-schema-draft-04.json'); -ajv.addMetaSchema(metaSchema); -ajv._opts.defaultMeta = metaSchema.id; - -// optional, using unversioned URI is out of spec, see https://github.com/json-schema-org/json-schema-spec/issues/216 -ajv._refs['http://json-schema.org/schema'] = 'http://json-schema.org/draft-04/schema'; - -// Optionally you can also disable keywords defined in draft-06 -ajv.removeKeyword('propertyNames'); -ajv.removeKeyword('contains'); -ajv.removeKeyword('const'); - - -var fs = require('fs'); -var path = require('path') - -var f = []; +const Ajv = require('ajv'); +const fs = require('fs'); +const path = require('path') function fromDir(startPath,filter){ + var f = [] if (!fs.existsSync(startPath)){ console.log("no dir ",startPath); return; @@ -35,7 +14,7 @@ function fromDir(startPath,filter){ var filename=path.join(startPath,files[i]); var stat = fs.lstatSync(filename); if (stat.isDirectory()){ - fromDir(filename,filter); //recurse + f.push(...fromDir(filename,filter)); //recurse } else if (filename.indexOf(filter)>=0) { console.log('-- found: ',filename); @@ -46,58 +25,67 @@ function fromDir(startPath,filter){ }; -var jsonFiles = fromDir("../../../json_schema/", ".json"); - - - - - -function getCompiledSchemas(){ - - var schemas = [] - - for(var i=0; i< jsonFiles.length; i++){ - - if(jsonFiles[i].indexOf("analysis") == -1){ - var filename = jsonFiles[i]; - var schema = require(filename); - - if(schema.id === undefined){ - schema.id = filename - } - ajv.addSchema(schema); - schemas.push(schema) - - } - else{ - console.log("we don't want to look at " + jsonFiles[i]); - } - } +function createConfiguredAjv(){ + var ajv = new Ajv({allErrors: true, + verbose : true, + meta: false, // optional, to prevent adding draft-06 meta-schema + extendRefs: true, // optional, current default is to 'fail', spec behaviour is to 'ignore' + unknownFormats: 'ignore', // optional, current default is true (fail) + errorDataPath: 'property', + messages: true, + jsonPointers: false, + inlineRefs: false, + addUsedSchema: true, + passContext: true + }); + + var metaSchema = require('ajv/lib/refs/json-schema-draft-04.json'); + ajv.addMetaSchema(metaSchema); + ajv._opts.defaultMeta = metaSchema.id; + + // optional, using unversioned URI is out of spec, see https://github.com/json-schema-org/json-schema-spec/issues/216 + ajv._refs['http://json-schema.org/schema'] = 'http://json-schema.org/draft-04/schema'; + + // Optionally you can also disable keywords defined in draft-06 + ajv.removeKeyword('propertyNames'); + ajv.removeKeyword('contains'); + ajv.removeKeyword('const'); + + // add the schemas + var schemaFiles = fromDir("../../../json_schema/", ".json"); + + schemaFiles + .filter((schemaFile) => !schemaFile.includes("analysis.json")) + .forEach((schemaFile) => { + var schema = require(schemaFile); + schema.id = schemaFile; + ajv.addSchema(require(schemaFile), schemaFile); + }); - var validate; - for(var j=0; j< schemas.length; j++){ + return ajv; +} - validate = ajv.compile(schemas[j]); - console.log("Schema " + schemas[j].title + ".json is a valid json schema") - } - return validate; +function getValidatorFunctionForSchema(ajvValidator, schemaPath){ + schema = require(schemaPath); + return ajvValidator.compile(schema); } var donor = require("../../../schema_tests/sample/pass/donor_test1.json"); var sample = require("../../../schema_tests/sample/fail/sample-test-current.json"); -var validate = getCompiledSchemas(); -test(donor); -test(sample); +test(donor, "../../../json_schema/sample.json"); +test(sample, "../../../json_schema/sample.json"); -function test(data) { - var valid = validate(data); +function test(data, schema) { + var ajv = createConfiguredAjv() + var validator = getValidatorFunctionForSchema(ajv, schema) + var valid = validator(data); if (valid) console.log('Valid!'); - else console.log('Invalid: ' + ajv.errorsText(validate.errors)); + else console.log('Invalid: ' + ajv.errorsText(validator.errors)); - validate.errors.forEach((error) =>{ + validator.errors.forEach((error) =>{ console.log(error); }); From 4c7746b514f982a7876e9a9b8e6b54fcbec7022c Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Thu, 9 Nov 2017 12:12:11 +0000 Subject: [PATCH 119/128] Beautified descriptions of fields. Fixed barcode.read enums. --- json_schema/analysis.json | 8 ++++---- json_schema/barcode.json | 11 ++++++----- json_schema/cell_suspension.json | 8 ++++---- json_schema/contact.json | 11 ++++++----- json_schema/project.json | 4 ++-- json_schema/protocol.json | 2 +- json_schema/sample.json | 2 +- json_schema/seq.json | 5 ++--- json_schema/well.json | 10 +++++----- 9 files changed, 31 insertions(+), 30 deletions(-) diff --git a/json_schema/analysis.json b/json_schema/analysis.json index 6aad29c46..f5a9df8ed 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -12,11 +12,11 @@ } }, "analysis_id" : { - "description" : "ID give to the analysis run which refers back to the analysis instance in the green box.", + "description" : "A unique ID for this analysis.", "type" : "number" }, "name": { - "description": "A short descriptive name for the entity analysis.", + "description": "A short, descriptive name for the analysis that need not be unique.", "type": "string" }, "description": { @@ -24,7 +24,7 @@ "type": "string" }, "computational_method" : { - "description" : "A URI to a versioned workflow and versioned execution environment in a GA4GH compliant repository.", + "description" : "A URI to a versioned workflow and versioned execution environment in a GA4GH-compliant repository.", "type" : "uri" }, "outputs" : { @@ -69,7 +69,7 @@ "run", "copy-forward" ], - "description" : "Indicator if the run was a actually ran or just copied forward as an optimization.", + "description" : "Indicator of whether the analysis actually ran or was just copied forward as an optimization.", "type" : "string" }, "reference_bundle" : { diff --git a/json_schema/barcode.json b/json_schema/barcode.json index c062fb110..f69bb20e1 100644 --- a/json_schema/barcode.json +++ b/json_schema/barcode.json @@ -10,17 +10,18 @@ "type": "integer" }, "size": { - "description": "Size of barcode.", + "description": "Size of barcode in nucleotides.", "maximum": 50, "minimum": 0, "type": "integer" }, "read": { - "description": "Which read barcode is found on. Should be one of read1, read2, reads, or index, or some TBD field of seq.lane.", + "description": "The read that the barcode is found in. Should be one of Read 1, Read 2, i7 Index, or i5 Index.", "enum": [ - "r1", - "r2", - "i1" + "Read 1", + "Read 2", + "i7 Index", + "i5 Index" ] }, "white_list_file": { diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 0fdb8ef4f..1c1f001c1 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -3,24 +3,24 @@ "description": "Information about the cell suspension derived from the collected or cultured specimen", "properties": { "target_cell_type": { - "description" : "cell types present in suspension", + "description" : "Cell types present in the suspension.", "type": "array", "items": {"$ref": "ontology_json/cell_type_ontology.json" } }, "enrichment": { - "description": "How cells were enriched for specific type or to weed out common types after disassociation.", + "description": "How sample was enriched for specific cell type(s).", "type": "array", "items": { "$ref": "enrichment.json" } }, "total_estimated_cells": { - "description": "Total estimated number of cells in sample. May be 1 for well based assays.", + "description": "Total estimated number of cells in sample. May be 1 for well-based assays.", "maximum": 1000000000.0, "minimum": 0.1, "type": "number" }, "well": { "$ref": "well.json", - "description": "If sample was isolated in a well in plate (or fluidics chip), information about that" + "description": "Information about wells in a plate or chip used for single-cell isolation." } }, "title" : "cell_suspension" diff --git a/json_schema/contact.json b/json_schema/contact.json index 8b82c85d4..4cf8d1af6 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -5,22 +5,23 @@ "description": "contact schema generate by tagSchemaToJson from contact", "properties": { "address": { - "description": "Full mailing address except for name. Includes city, state, postal code, country.", + "description": "Full mailing address where contact works. Should include street name and number, city, state, postal code, country.", "type": "string" }, "city": { - "description": "City name. See also contact.address", + "description": "Name of city where contact works.", "type": "string" }, "country": { - "description": "Country (USA or UK for those countries, otherwise spelled out)", + "description": "Name of country where contact works. Please spell out (except for USA or UK).", "enum": [ "Austria", "Canada", "China", "France", "Germany", - "Japan", + "Israel", + "Japan", "Sweden", "Switzerland", "UK", @@ -28,7 +29,7 @@ ] }, "country_division": { - "description": "State in the USA, provence, canton, or other subdivisions for other countries.", + "description": "Name of state, province, canton, or other country subdivision.", "enum": [ "AL", "AK", diff --git a/json_schema/project.json b/json_schema/project.json index 5ba57e09c..419365ed6 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -11,11 +11,11 @@ }, "properties": { "project_id":{ - "description": "A unique ID for the project.", + "description": "A unique ID for this project.", "type": "string" }, "name": { - "description": "A short descriptive name for the entity project. Does not need to be unique.", + "description": "A short, descriptive name for the project that need not be unique.", "type": "string" }, "description": { diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 69a945a31..ec5943e31 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -5,7 +5,7 @@ "description": "protocol schema generate by tagSchemaToJson from protocol", "properties": { "protocol_id":{ - "description": "A unique ID for the protocol.", + "description": "A unique ID for this protocol.", "type": "string" }, "name": { diff --git a/json_schema/sample.json b/json_schema/sample.json index a558e9c63..20304d89a 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -20,7 +20,7 @@ "properties": { "core": { "$ref": "core.json" }, "sample_id":{ - "description": "A local identifier for the sample. Should be unique in the context of the project.", + "description": "A unique ID for this sample.", "type": "string" }, "name": { diff --git a/json_schema/seq.json b/json_schema/seq.json index 1512ce8fd..9ef114eb0 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -75,7 +75,7 @@ "$ref": "#/definitions/lanes" }, "library_construction": { - "description": "How the DNA sequencing library was prepared. e.g. \"Nextera XT\" \"TrueSeq\".", + "description": "How the DNA sequencing library was prepared. e.g. Nextera XT, TrueSeq.", "enum": [ "Nextera XT", "TruSeq", @@ -94,7 +94,6 @@ "molecule": { "description": "Specific type of molecule sequenced. e.g. total RNA, genomic DNA, polyA RNA.", "enum": [ - "RNA", "polyA RNA", "total RNA", "genomic DNA" @@ -105,7 +104,7 @@ "type": "boolean" }, "umi_barcode": { - "description": "Information about unique molecular identifier (umi) barcode.", + "description": "Information about unique molecular identifier (UMI) barcode sequences.", "$ref": "barcode.json" } }, diff --git a/json_schema/well.json b/json_schema/well.json index 9497f2588..b32990a8f 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -4,19 +4,19 @@ "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { "col": { - "description": "well column in plate", + "description": "Well column in plate.", "type": "string" }, "name": { - "description": "A name for the well, should be unique for the plate", + "description": "A name for the well. Should be unique for the plate", "type": "string" }, "plate": { - "description": "plate id that well came from if any", + "description": "An ID for the plate that the well is located on.", "type": "string" }, "quality": { - "description": "Note on how good cell looks if imaged in well before sequencing", + "description": "Note on how good cell looks if imaged in well before sequencing.", "enum": [ "OK", "control, 2-cell well", @@ -25,7 +25,7 @@ ] }, "row": { - "description": "well row in plate", + "description": "Well row in plate.", "type": "string" } }, From 89237afed66f855f2913d3d7e670af16d89810df Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Thu, 9 Nov 2017 14:19:28 +0000 Subject: [PATCH 120/128] Removed sample_id from file as no core entity should reference another core entity. Core links are assigned at ingest --- json_schema/file.json | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/json_schema/file.json b/json_schema/file.json index a09c0eb8b..86c4f8fb1 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -19,14 +19,9 @@ "jpg", "png" ] - }, - "sample_id" : { - "type" : "string", - "description" : "The ID of the sample from which the data file was generated." } }, "required": [ - "filename", - "sample_id" + "filename" ] } From 9f390b1cc58f9421da9e65707c0a8855179ed77a Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 10 Nov 2017 11:54:12 +0000 Subject: [PATCH 121/128] Corrected definitions reference to use the correct file path --- json_schema/analysis.json | 6 +++--- json_schema/seq.json | 2 +- json_schema/submission.json | 6 +++--- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/json_schema/analysis.json b/json_schema/analysis.json index f5a9df8ed..f8edfc52f 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -7,7 +7,7 @@ "type" : "array", "items" : { "type" : { - "$ref" : "#/definitions/task" + "$ref" : "analysis.json#/definitions/task" } } }, @@ -30,7 +30,7 @@ "outputs" : { "items" : { "type" : { - "$ref" : "#/definitions/file" + "$ref" : "analysis.json#/definitions/file" } }, "description" : "Output generated by the pipeline run.", @@ -58,7 +58,7 @@ "inputs" : { "items" : { "type" : { - "$ref" : "#/definitions/parameter" + "$ref" : "analysis.json#/definitions/parameter" } }, "type" : "array", diff --git a/json_schema/seq.json b/json_schema/seq.json index 9ef114eb0..c9604476d 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -72,7 +72,7 @@ ] }, "lanes": { - "$ref": "#/definitions/lanes" + "$ref": "seq.json#/definitions/lanes" }, "library_construction": { "description": "How the DNA sequencing library was prepared. e.g. Nextera XT, TrueSeq.", diff --git a/json_schema/submission.json b/json_schema/submission.json index d9109fb5f..ade6edccd 100644 --- a/json_schema/submission.json +++ b/json_schema/submission.json @@ -10,7 +10,7 @@ "additionalProperties" : false, "type" : "array", "items" : { - "$ref" : "#/definitions/file" + "$ref" : "submission.json#/definitions/file" } }, "file" : { @@ -72,10 +72,10 @@ }, "properties" : { "transfer_service_version" : { - "$ref" : "#/definitions/transfer_service_version" + "$ref" : "submission.json#/definitions/transfer_service_version" }, "submitted_files" : { - "$ref" : "#/definitions/submitted_files" + "$ref" : "submission.json#/definitions/submitted_files" } }, "required" : [ From 58f66a7fb55073a4741b27df2a703b365ff5c039 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Fri, 10 Nov 2017 16:24:18 +0000 Subject: [PATCH 122/128] Added core property reference to analysis, file and sample objects and added ref_updater python script --- json_schema/analysis.json | 4 +++ json_schema/file.json | 6 +++- json_schema/sample.json | 5 ++- src/ref_updater.py | 70 +++++++++++++++++++++++++++++++++++++++ 4 files changed, 83 insertions(+), 2 deletions(-) create mode 100644 src/ref_updater.py diff --git a/json_schema/analysis.json b/json_schema/analysis.json index f8edfc52f..9c1b496c8 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -75,6 +75,10 @@ "reference_bundle" : { "description" : "Bundle containing the reference used in running the pipeline.", "type" : "uri" + }, + "core": { + "description": "Type and schema for this object.", + "$ref": "core.json" } }, "type" : "object", diff --git a/json_schema/file.json b/json_schema/file.json index 86c4f8fb1..d19e75f41 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -19,7 +19,11 @@ "jpg", "png" ] - } + }, + "core": { + "description": "Type and schema for this object.", + "$ref": "core.json" + }, }, "required": [ "filename" diff --git a/json_schema/sample.json b/json_schema/sample.json index 20304d89a..f4abaa409 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -18,7 +18,10 @@ ], "properties": { - "core": { "$ref": "core.json" }, + "core": { + "description": "Type and schema for this object.", + "$ref": "core.json" + }, "sample_id":{ "description": "A unique ID for this sample.", "type": "string" diff --git a/src/ref_updater.py b/src/ref_updater.py new file mode 100644 index 000000000..0dc3fa043 --- /dev/null +++ b/src/ref_updater.py @@ -0,0 +1,70 @@ +from optparse import OptionParser +import os, json + + +def update_refs(args): + url = args.url + input = args.input + output = args.output + + + files = getJsonFiles(input) + + for f in files: + if ".json" in f: + updateJson(input, f, output, url) + +def updateJson(input, f, output, url): + with open(input + f) as data_file: + jsonData = json.load(data_file) + newJson = replaceUrl(jsonData, "$ref", url) + dumpJsonToFile(output, newJson, f) + + +def dumpJsonToFile(outputDir, object, name): + if outputDir: + dir = os.path.abspath(outputDir) + if not os.path.exists(dir): + os.makedirs(dir) + tmpFile = open(dir + "/" +name, "w") + tmpFile.write(json.dumps(object, indent=4)) + tmpFile.close() + + +def replaceUrl(jsonSchema, k, v): + for key in jsonSchema.keys(): + if key == k: + old = jsonSchema[key] + jsonSchema[key] = v + old + elif type(jsonSchema[key]) is dict: + replaceUrl(jsonSchema[key], k, v) + + return jsonSchema + + + + +def getJsonFiles(path): + if os.path.exists(path): + filesInDir = os.listdir(path) + + return filesInDir + + else: + print(path + " is not a valid directory") + exit(3) + + + +if __name__ == "__main__": + parser = OptionParser() + parser.add_option("-u", "--url", dest="url", help="Full reference URL") + parser.add_option("-i", "--input", dest="input", help="Path to json files") + parser.add_option("-o", "--output", dest="output", help="Path for outout json") + + (options, args) = parser.parse_args() + if not options.url: + print("You must supply a full URL") + exit(2) + + update_refs(options) \ No newline at end of file From 9799665488be41ab78ea965e417b433996fa06da Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Sat, 11 Nov 2017 12:28:54 +0000 Subject: [PATCH 123/128] Fixed descriptions for rna and immortalized cell line json. --- json_schema/immortalized_cell_line.json | 18 +++++++++--------- json_schema/rna.json | 4 ++-- 2 files changed, 11 insertions(+), 11 deletions(-) diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index 630f6d958..fb58b7a21 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -4,43 +4,43 @@ "description": "Information about the immortalized cell line used in the sample", "properties": { "catalog_number": { - "description": "the supplier catalogue number for the cell line", + "description": "The supplier catalogue number for the cell line.", "type": "string" }, "catalog_url": { - "description": "the supplier catalogue url for the cell line", + "description": "The supplier catalogue URL for the cell line.", "type": "string" }, "cell_type": { - "description": "what cell type was the line derived from, CLO ontology usually", + "description": "What cell type the line was derived from. CLO ontology.", "$ref": "ontology_json/cell_type_ontology.json" }, "date_established": { - "description": "when was the cell line established", + "description": "When the cell line was established.", "format": "date-time", "type": "string" }, "disease": { - "description": "text describing disease association, preferable a disease found in EFO", + "description": "A disease associated with the cell line. EFO ontology.", "$ref": "ontology_json/disease_ontology.json" }, "karyotype": { - "description": "the karyotype of the cell line", + "description": "The karyotype of the cell line.", "type": "string" }, "passage_number": { - "description": "how many passages the cell line as been through", + "description": "The number of passages the cell line as been through.", "maximum": 1000, "minimum": 0, "type": "integer" }, "publication": { - "description": "in what publication was the cell line creation cited", + "description": "The publication in which the cell line creation was cited.", "$ref": "publication.json" }, "cell_cycle": { "$ref": "ontology.json", - "description": "If sample is synchronized growing cells or a cell in a known phase of cell cycle, put which phase here." + "description": "The cell cycle phase, if known." } }, "title": "immortalized_cell_line", diff --git a/json_schema/rna.json b/json_schema/rna.json index a8c77821b..d0ca31349 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -17,8 +17,8 @@ "library_construction": { "description": "The general approach for sequencing library construction. e.g. Smart-seq, Drop-seq, 10x.", "enum": [ - "unknown", - "CEL-seq", + "unknown", + "CEL-seq", "SMARTer Ultra Low RNA Kit", "modified smart-seq2", "smart-seq2", From 07dbd174610431a150f91868fc8d578b95befde4 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Sun, 12 Nov 2017 11:03:13 +0000 Subject: [PATCH 124/128] REmoved dangling comma from file.json --- json_schema/file.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/file.json b/json_schema/file.json index d19e75f41..f69647e97 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -23,7 +23,7 @@ "core": { "description": "Type and schema for this object.", "$ref": "core.json" - }, + } }, "required": [ "filename" From 3db51122716c74b63dc06b077f5cc681268c5369 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Mon, 13 Nov 2017 17:18:02 +0000 Subject: [PATCH 125/128] Renamed single_cell barcode field to cell_barcode for clarification --- json_schema/single_cell.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index b99e9deef..519aac864 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -3,7 +3,7 @@ "additionalProperties": false, "description": "Contains information on single cell aspects of an assay.", "properties": { - "barcode": { + "cell_barcode": { "description": "Information about cell identifier barcode.", "$ref": "barcode.json" }, From 80eb40ad8fdeeff028e92370fcdcfefca70fcb16 Mon Sep 17 00:00:00 2001 From: Mallory Freeberg Date: Wed, 15 Nov 2017 12:50:07 -0500 Subject: [PATCH 126/128] Beautified enrichment.json field descriptions. --- json_schema/enrichment.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index 728e44523..ece04f54d 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -4,23 +4,23 @@ "additionalProperties": false, "properties": { "markers": { - "description": "Text in the format of space delimited list of markers with +/-. Example: \"CD4+ CD8-\"", + "description": "Space-delimited list of markers (with +/-) used for enrichment. e.g. CD4+ CD8-", "type": "string" }, "size_max": { - "description": "Maximum size passing selection in microns", + "description": "Maximum size passing selection, in microns.", "maximum": 10000, "minimum": 0.01, "type": "number" }, "size_min": { - "description": "Minimum size passing selection in microns", + "description": "Minimum size passing selection, in microns.", "maximum": 10000, "minimum": 0.01, "type": "number" }, "type": { - "description": "How enrichment was achieved. MACS, FACS, filter, etc", + "description": "The method by which enrichment was achieved. e.g. MACS, FACS, Ficoli gradient", "enum": [ "FACS", "MACS", From fc98079d62b120d5931bf71b679e40401f473c43 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 21 Nov 2017 10:54:58 +0000 Subject: [PATCH 127/128] v4 metadata schema ready for release. All $ref tags updated to raw github v4 tag URL --- json_schema/analysis.json | 304 ++++++++++++------------ json_schema/assay.json | 41 ++-- json_schema/assay_bundle.json | 61 ++--- json_schema/barcode.json | 36 +-- json_schema/cell_suspension.json | 22 +- json_schema/contact.json | 154 ++++++------ json_schema/core.json | 24 +- json_schema/death.json | 33 +-- json_schema/donor.json | 107 +++++---- json_schema/enrichment.json | 8 +- json_schema/file.json | 6 +- json_schema/imaging.json | 62 ++--- json_schema/immortalized_cell_line.json | 28 +-- json_schema/ingest.json | 20 +- json_schema/ontology.json | 16 +- json_schema/organoid.json | 10 +- json_schema/primary_cell_line.json | 12 +- json_schema/project.json | 24 +- json_schema/project_bundle.json | 47 ++-- json_schema/protocol.json | 30 +-- json_schema/publication.json | 18 +- json_schema/rna.json | 56 ++--- json_schema/sample.json | 111 +++++---- json_schema/sample_bundle.json | 67 +++--- json_schema/seq.json | 42 ++-- json_schema/single_cell.json | 26 +- json_schema/specimen_from_organism.json | 18 +- json_schema/state_of_specimen.json | 40 ++-- json_schema/submission.json | 162 ++++++------- json_schema/well.json | 18 +- 30 files changed, 825 insertions(+), 778 deletions(-) diff --git a/json_schema/analysis.json b/json_schema/analysis.json index 9c1b496c8..330424601 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -1,155 +1,155 @@ { - "$schema" : "http://json-schema.org/draft-04/schema#", - "additionalProperties" : true, - "properties" : { - "tasks" : { - "description" : "Descriptions of tasks in the workflow.", - "type" : "array", - "items" : { - "type" : { - "$ref" : "analysis.json#/definitions/task" + "$schema": "http://json-schema.org/draft-04/schema#", + "additionalProperties": true, + "properties": { + "tasks": { + "description": "Descriptions of tasks in the workflow.", + "type": "array", + "items": { + "type": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/task" + } } - } - }, - "analysis_id" : { - "description" : "A unique ID for this analysis.", - "type" : "number" - }, - "name": { - "description": "A short, descriptive name for the analysis that need not be unique.", - "type": "string" - }, - "description": { - "description": "A general description of the analysis.", - "type": "string" - }, - "computational_method" : { - "description" : "A URI to a versioned workflow and versioned execution environment in a GA4GH-compliant repository.", - "type" : "uri" - }, - "outputs" : { - "items" : { - "type" : { - "$ref" : "analysis.json#/definitions/file" - } - }, - "description" : "Output generated by the pipeline run.", - "type" : "array" - }, - "input_bundles" : { - "items" : { - "type" : "uri" - }, - "description" : "The input bundles used in this analysis run.", - "type" : "array" - }, - "timestamp_stop_utc" : { - "type" : "date-time", - "description" : "Terminal stop time of the full pipeline." - }, - "metadata_schema" : { - "description" : "The version of the metadata schemas used for the json files.", - "type" : "string" - }, - "timestamp_start_utc" : { - "description" : "Initial start time of the full pipeline.", - "type" : "date-time" - }, - "inputs" : { - "items" : { - "type" : { - "$ref" : "analysis.json#/definitions/parameter" - } - }, - "type" : "array", - "description" : "Input parameters used in the pipeline run, these can be files or string values (settings)." - }, - "analysis_run_type" : { - "enum" : [ - "run", - "copy-forward" - ], - "description" : "Indicator of whether the analysis actually ran or was just copied forward as an optimization.", - "type" : "string" - }, - "reference_bundle" : { - "description" : "Bundle containing the reference used in running the pipeline.", - "type" : "uri" - }, - "core": { + }, + "analysis_id": { + "description": "A unique ID for this analysis.", + "type": "number" + }, + "name": { + "description": "A short, descriptive name for the analysis that need not be unique.", + "type": "string" + }, + "description": { + "description": "A general description of the analysis.", + "type": "string" + }, + "computational_method": { + "description": "A URI to a versioned workflow and versioned execution environment in a GA4GH-compliant repository.", + "type": "uri" + }, + "outputs": { + "items": { + "type": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/file" + } + }, + "description": "Output generated by the pipeline run.", + "type": "array" + }, + "input_bundles": { + "items": { + "type": "uri" + }, + "description": "The input bundles used in this analysis run.", + "type": "array" + }, + "timestamp_stop_utc": { + "type": "date-time", + "description": "Terminal stop time of the full pipeline." + }, + "metadata_schema": { + "description": "The version of the metadata schemas used for the json files.", + "type": "string" + }, + "timestamp_start_utc": { + "description": "Initial start time of the full pipeline.", + "type": "date-time" + }, + "inputs": { + "items": { + "type": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/parameter" + } + }, + "type": "array", + "description": "Input parameters used in the pipeline run, these can be files or string values (settings)." + }, + "analysis_run_type": { + "enum": [ + "run", + "copy-forward" + ], + "description": "Indicator of whether the analysis actually ran or was just copied forward as an optimization.", + "type": "string" + }, + "reference_bundle": { + "description": "Bundle containing the reference used in running the pipeline.", + "type": "uri" + }, + "core": { "description": "Type and schema for this object.", - "$ref": "core.json" - } - }, - "type" : "object", - "definitions" : { - "file" : { - "additionalProperties" : false, - "required" : [ - "checksum", - "file_path", - "format" - ], - "properties" : { - "format" : "string", - "file_path" : "uri", - "checksum" : "string" - }, - "type" : "object" - }, - "task" : { - "properties" : { - "start_time" : "date-time", - "stop_time" : "date-time", - "name" : "string", - "log_err" : "uri", - "log_out" : "uri", - "disk_size" : "string", - "docker_image" : "string", - "cpus" : "int", - "memory" : "string", - "zone" : "string" - }, - "required" : [ - "name", - "start_time", - "stop_time", - "log", - "disk_size", - "docker_image", - "cpus", - "memory", - "zone" - ], - "additionalProperties" : false, - "type" : "object" - }, - "parameter" : { - "additionalProperties" : false, - "required" : [ - "name", - "value" - ], - "properties" : { - "checksum" : "string", - "value" : "string", - "name" : "string" - }, - "type" : "object" - } - }, - "title" : "analysis", - "required" : [ - "timestamp_start_utc", - "timestamp_stop_utc", - "computational_method", - "input_bundles", - "reference_bundle", - "analysis_id", - "analysis_run_type", - "metadata_schema", - "tasks", - "inputs", - "outputs" - ] -} + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + } + }, + "type": "object", + "definitions": { + "file": { + "additionalProperties": false, + "required": [ + "checksum", + "file_path", + "format" + ], + "properties": { + "format": "string", + "file_path": "uri", + "checksum": "string" + }, + "type": "object" + }, + "task": { + "properties": { + "start_time": "date-time", + "stop_time": "date-time", + "name": "string", + "log_err": "uri", + "log_out": "uri", + "disk_size": "string", + "docker_image": "string", + "cpus": "int", + "memory": "string", + "zone": "string" + }, + "required": [ + "name", + "start_time", + "stop_time", + "log", + "disk_size", + "docker_image", + "cpus", + "memory", + "zone" + ], + "additionalProperties": false, + "type": "object" + }, + "parameter": { + "additionalProperties": false, + "required": [ + "name", + "value" + ], + "properties": { + "checksum": "string", + "value": "string", + "name": "string" + }, + "type": "object" + } + }, + "title": "analysis", + "required": [ + "timestamp_start_utc", + "timestamp_stop_utc", + "computational_method", + "input_bundles", + "reference_bundle", + "analysis_id", + "analysis_run_type", + "metadata_schema", + "tasks", + "inputs", + "outputs" + ] +} \ No newline at end of file diff --git a/json_schema/assay.json b/json_schema/assay.json index e82d4087c..1e6d14c61 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -1,12 +1,12 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, + "additionalProperties": false, + "definitions": {}, "description": "An assay contains information relevant to how a sample (in vitro) was converted into digital information (in silico).", - "properties": { + "properties": { "core": { - "description": "Type and schema for this object.", - "$ref": "core.json" + "description": "Type and schema for this object.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, "assay_id": { "description": "A unique ID for this assay.", @@ -20,26 +20,27 @@ "description": "A general description of the assay.", "type": "string" }, - "imaging": { - "description": "Information on image based RNA quantification assays", - "$ref": "imaging.json" + "imaging": { + "description": "Information on image based RNA quantification assays", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/imaging.json" }, "rna": { - "description": "Information about how RNA was converted to cDNA.", - "$ref": "rna.json" - }, + "description": "Information about how RNA was converted to cDNA.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/rna.json" + }, "seq": { - "description": "Information about how a cDNA sample was sequenced.", - "$ref": "seq.json" - }, + "description": "Information about how a cDNA sample was sequenced.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json" + }, "single_cell": { - "description": "Information on single-cell aspects of an assay.", - "$ref": "single_cell.json" + "description": "Information on single-cell aspects of an assay.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/single_cell.json" } - }, + }, "required": [ - "core", "assay_id" + "core", + "assay_id" ], - "title": "assay", + "title": "assay", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/assay_bundle.json b/json_schema/assay_bundle.json index 922f77918..a3cce74bc 100644 --- a/json_schema/assay_bundle.json +++ b/json_schema/assay_bundle.json @@ -1,33 +1,36 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A schema for an assay bundle" , - "type": "array", - "definitions" : { - "assay_ingest" : { - "type": "object", - "required": ["hca_ingest", "content"], - "properties": { - "hca_ingest": { - "$ref": "ingest.json", - "description": "core fields added by HCA ingest service", - "type": "object" - }, - "content": { - "$ref": "assay.json", - "description": "Assay content", - "type": "object" - }, - "derivation_protocols": { - "items": { - "$ref": "protocol.json", - "description": "An array of protocols used in derivation of this sample." - }, - "type": "array" + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for an assay bundle", + "type": "array", + "definitions": { + "assay_ingest": { + "type": "object", + "required": [ + "hca_ingest", + "content" + ], + "properties": { + "hca_ingest": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay.json", + "description": "Assay content", + "type": "object" + }, + "derivation_protocols": { + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", + "description": "An array of protocols used in derivation of this sample." + }, + "type": "array" + } + } } - } + }, + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay_bundle.json#/definitions/assay_ingest" } - }, - "items": { - "$ref": "assay_bundle.json#/definitions/assay_ingest" - } } \ No newline at end of file diff --git a/json_schema/barcode.json b/json_schema/barcode.json index f69bb20e1..37ee70394 100644 --- a/json_schema/barcode.json +++ b/json_schema/barcode.json @@ -1,20 +1,20 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, + "additionalProperties": false, "description": "This object describes where a particular type of barcode is in a read.", "properties": { "offset": { "description": "Offset in read of barcode. 0 for beginning of read.", - "maximum": 50, - "minimum": 0, + "maximum": 50, + "minimum": 0, "type": "integer" - }, + }, "size": { "description": "Size of barcode in nucleotides.", - "maximum": 50, - "minimum": 0, + "maximum": 50, + "minimum": 0, "type": "integer" - }, + }, "read": { "description": "The read that the barcode is found in. Should be one of Read 1, Read 2, i7 Index, or i5 Index.", "enum": [ @@ -23,17 +23,17 @@ "i7 Index", "i5 Index" ] - }, - "white_list_file": { - "description": "Name of file containing legitimate barcode sequences. Unused for randomly generated barcodes.", + }, + "white_list_file": { + "description": "Name of file containing legitimate barcode sequences. Unused for randomly generated barcodes.", "type": "string" - } - }, + } + }, "required": [ - "offset", - "size", - "read" - ] , - "title": "barcode", + "offset", + "size", + "read" + ], + "title": "barcode", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index 1c1f001c1..ae70d8311 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -1,16 +1,20 @@ -{ +{ "$schema": "http://json-schema.org/draft-04/schema#", "description": "Information about the cell suspension derived from the collected or cultured specimen", "properties": { "target_cell_type": { - "description" : "Cell types present in the suspension.", + "description": "Cell types present in the suspension.", "type": "array", - "items": {"$ref": "ontology_json/cell_type_ontology.json" } - }, + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" + } + }, "enrichment": { "description": "How sample was enriched for specific cell type(s).", - "type": "array", - "items": { "$ref": "enrichment.json" } + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/enrichment.json" + } }, "total_estimated_cells": { "description": "Total estimated number of cells in sample. May be 1 for well-based assays.", @@ -19,9 +23,9 @@ "type": "number" }, "well": { - "$ref": "well.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/well.json", "description": "Information about wells in a plate or chip used for single-cell isolation." } - }, - "title" : "cell_suspension" + }, + "title": "cell_suspension" } \ No newline at end of file diff --git a/json_schema/contact.json b/json_schema/contact.json index 4cf8d1af6..b873fd7cf 100644 --- a/json_schema/contact.json +++ b/json_schema/contact.json @@ -1,117 +1,117 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, - "description": "contact schema generate by tagSchemaToJson from contact", + "additionalProperties": false, + "definitions": {}, + "description": "contact schema generate by tagSchemaToJson from contact", "properties": { "address": { "description": "Full mailing address where contact works. Should include street name and number, city, state, postal code, country.", "type": "string" - }, + }, "city": { "description": "Name of city where contact works.", "type": "string" - }, + }, "country": { "description": "Name of country where contact works. Please spell out (except for USA or UK).", "enum": [ - "Austria", - "Canada", - "China", - "France", - "Germany", + "Austria", + "Canada", + "China", + "France", + "Germany", "Israel", "Japan", - "Sweden", - "Switzerland", - "UK", + "Sweden", + "Switzerland", + "UK", "USA" ] - }, + }, "country_division": { "description": "Name of state, province, canton, or other country subdivision.", "enum": [ - "AL", - "AK", - "AR", - "AZ", - "CA", - "CO", - "CT", - "DE", - "FL", - "GA", - "HI", - "ID", - "IA", - "IL", - "IN", - "KS", - "KY", - "LA", - "MA", - "MD", - "ME", - "MI", - "MN", - "MO", - "MS", - "MT", - "NC", - "ND", - "NE", - "NH", - "NJ", - "NM", - "NV", - "NY", - "OH", - "OK", - "OR", - "PA", - "RI", - "SC", - "SD", - "TN", - "TX", - "UT", - "VT", - "VA", - "WA", - "WV", - "WI", - "XY", - "FU", - "PR", + "AL", + "AK", + "AR", + "AZ", + "CA", + "CO", + "CT", + "DE", + "FL", + "GA", + "HI", + "ID", + "IA", + "IL", + "IN", + "KS", + "KY", + "LA", + "MA", + "MD", + "ME", + "MI", + "MN", + "MO", + "MS", + "MT", + "NC", + "ND", + "NE", + "NH", + "NJ", + "NM", + "NV", + "NY", + "OH", + "OK", + "OR", + "PA", + "RI", + "SC", + "SD", + "TN", + "TX", + "UT", + "VT", + "VA", + "WA", + "WV", + "WI", + "XY", + "FU", + "PR", "VI" ] - }, + }, "email": { "description": "An email address for the contact.", - "pattern": "^.*@.*..*$", + "pattern": "^.*@.*..*$", "type": "string" }, "institution": { "description": "Name of primary institute where contact works.", "type": "string" - }, + }, "laboratory": { "description": "Name of lab (often the PI name) within institute where contact works.", "type": "string" - }, + }, "name": { "description": "The contact's name. Should be in the format first, middle, last name. Middle can be initial or left blank. e.g. John,D,Doe or Jane,,Smith", "type": "string" }, - "phone":{ + "phone": { "description": "Phone number (including country code) of contact or contact's lab.", "type": "string" } - }, + }, "required": [ - "name", - "email" - ], - "title": "contact", + "name", + "email" + ], + "title": "contact", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/core.json b/json_schema/core.json index b961ce724..7e3f1da8b 100644 --- a/json_schema/core.json +++ b/json_schema/core.json @@ -1,29 +1,29 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "Core object found in all modules.", "properties": { "schema_url": { "description": "URL of JSON schema document that validates this version of this module.", "type": "string" - }, + }, "schema_version": { "description": "Version number in major.minor.patch format. e.g. 3.2.4. Major version changes likely require changes to software. Minor version changes should not require software changes. Patches are just documentation changes.", - "pattern": "^...*..*$", + "pattern": "^...*..*$", "type": "string" - }, + }, "type": { - "description": "The name of the core metadata entity type.", + "description": "The name of the core metadata entity type.", "enum": [ - "assay", - "project", - "protocol", - "sample", - "file", - "analysis" + "assay", + "project", + "protocol", + "sample", + "file", + "analysis" ] } }, "required": [ "type" ] -} +} \ No newline at end of file diff --git a/json_schema/death.json b/json_schema/death.json index a884a2d5d..b92d46e97 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -1,38 +1,39 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, + "additionalProperties": false, + "definitions": {}, "description": "Information relating to the death of the donor", "properties": { "cause_of_death": { "description": "Cause of death from death report for human donor, from research lab for mouse.", - "$ref": "ontology.json" - }, + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + }, "cold_perfused": { "description": "Yes if perfused with cold fluid to help preserve tissues before heart stopped. No otherwise.", "type": "boolean" - }, + }, "days_on_ventilator": { "description": "Days on ventilator before dying.", - "maximum": 10000, - "minimum": 0, + "maximum": 10000, + "minimum": 0, "type": "number" - }, + }, "hardy_scale": { "description": "Should be integer representing: (0) ventilator case, (1) violent and fast death, (2) fast death of natural causes, (3) intermediate death, or (4) slow death.", - "maximum": 4, - "minimum": 0, + "maximum": 4, + "minimum": 0, "type": "integer" - }, + }, "time_of_death": { "description": "Date and time of death on death certificate for deceased donor.", "format": "date-time", "type": "string" } - }, + }, "required": [ - "cause_of_death", "time_of_death" - ], - "title": "death", + "cause_of_death", + "time_of_death" + ], + "title": "death", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/donor.json b/json_schema/donor.json index 2bdc77cde..ceae74ac4 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -1,20 +1,20 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "Information about the donor from which a specimen was collected", - "additionalProperties" : false, + "additionalProperties": false, "properties": { "age": { "description": "Age in age_units. For embryos, measured since fertilization. For all others, measured since birth.", - "maximum": 150, - "minimum": 0, + "maximum": 150, + "minimum": 0, "type": "number" - }, + }, "age_unit": { "description": "The unit in which age is expressed. Must be one of day, week, month, or year.", "enum": [ - "hour", - "day", - "week", + "hour", + "day", + "week", "year" ] }, @@ -22,64 +22,63 @@ "description": "Number of drinks consumed on a typical day.", "type": "string" }, - "ancestry": { "description": "An array of ontology terms from EMBL-EBI's Ancestry Ontology describing ancestral groups, uncategorised ancestral groups, and population isolates.", - "type": "array", - "items": { - "$ref": "ontology.json" - } - }, + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + } + }, "body_mass_index": { "description": "The body mass index of the donor.", - "maximum": 100, - "minimum": 5, + "maximum": 100, + "minimum": 5, "type": "number" - }, + }, "death": { - "description": "Information about conditions of death (or info that donor was living at time of collection).", - "$ref": "death.json" - }, + "description": "Information about conditions of death (or info that donor was living at time of collection).", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/death.json" + }, "development_stage": { - "description": "More detailed (especially for embryos) version of life_stage. e.g. \"E9\" or \"P17\" for mouse.", - "$ref": "ontology.json" - }, + "description": "More detailed (especially for embryos) version of life_stage. e.g. \"E9\" or \"P17\" for mouse.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + }, "disease": { "description": "Short description of disease status of individual.", - "type": "array", - "items": { - "$ref": "ontology_json/disease_ontology.json" - } - }, + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" + } + }, "genotype": { "description": "Genotype of donor including strain, cross, and genetic modification information. Must be in MGI format for mice.", "type": "string" - }, + }, "height": { "description": "Height of donor in meters.", - "maximum": 10, - "minimum": 0, + "maximum": 10, + "minimum": 0, "type": "number" }, "is_living": { "description": "Should be yes if donor is living at time of sample donation. Otherwise, should be no.", "type": "boolean" - }, + }, "life_stage": { "description": "Should be one of adult, child, embryo, or postpartum.", "enum": [ - "adult", - "child", - "embryo", + "adult", + "child", + "embryo", "postpartum" ] - }, + }, "medication": { - "description": "List of medications the donor was currently taking at time of sample donation.", - "type": "array", - "items": { - "$ref": "ontology.json" - } + "description": "List of medications the donor was currently taking at time of sample donation.", + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + } }, "nutritional_state": { "description": "Should be one of normal, fasting, or feeding tube removed.", @@ -92,33 +91,33 @@ "sex": { "description": "Sex of donor. Should be one of male, female, mixed, or unknown.", "enum": [ - "female", - "male", - "mixed", + "female", + "male", + "mixed", "unknown" ] }, "smoking_history": { "description": "Estimated number of cigarettes smoked per day and for how many years.", "type": "string" - }, + }, "strain": { - "description": "The name of th mouse inbred strain. e.g. C57BL/6.", - "type": "array", - "items": { - "$ref": "ontology.json" - } + "description": "The name of th mouse inbred strain. e.g. C57BL/6.", + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + } }, "weight": { "description": "Weight of donor in kilograms.", - "maximum": 1000, - "minimum": 0, + "maximum": 1000, + "minimum": 0, "type": "number" } - }, + }, "required": [ "is_living" ], "title": "donor", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/enrichment.json b/json_schema/enrichment.json index ece04f54d..9e39fe9bd 100644 --- a/json_schema/enrichment.json +++ b/json_schema/enrichment.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "enrichment schema generate by tagSchemaToJson from enrichment", + "description": "enrichment schema generate by tagSchemaToJson from enrichment", "additionalProperties": false, "properties": { "markers": { @@ -30,7 +30,7 @@ }, "required": [ "type" - ], - "title": "enrichment", + ], + "title": "enrichment", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/file.json b/json_schema/file.json index f69647e97..225b41d79 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -22,10 +22,10 @@ }, "core": { "description": "Type and schema for this object.", - "$ref": "core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" } }, "required": [ - "filename" + "filename" ] -} +} \ No newline at end of file diff --git a/json_schema/imaging.json b/json_schema/imaging.json index 5ed833414..9269f11f2 100644 --- a/json_schema/imaging.json +++ b/json_schema/imaging.json @@ -1,61 +1,61 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, - "description": "imaging schema generate by tagSchemaToJson from imaging", - "properties": { + "additionalProperties": false, + "definitions": {}, + "description": "imaging schema generate by tagSchemaToJson from imaging", + "properties": { "embedding": { - "description": "Description of embedding conditions", + "description": "Description of embedding conditions", "type": "string" - }, + }, "exposure_time": { - "description": "Exposure time as a floating point number in units of seconds", - "maximum": 1000, - "minimum": 1e-9, + "description": "Exposure time as a floating point number in units of seconds", + "maximum": 1000, + "minimum": 1e-09, "type": "number" - }, + }, "field_counts": { - "description": "number of fields in x and y dimensions", + "description": "number of fields in x and y dimensions", "items": { "type": "integer" - }, + }, "type": "array" - }, + }, "field_microns": { - "description": "microns covered by a field in x,y, and z. Z includes all focal planes in a single file", + "description": "microns covered by a field in x,y, and z. Z includes all focal planes in a single file", "items": { "type": "integer" - }, + }, "type": "array" - }, + }, "field_resolution": { - "description": "x, y, and z (number of focal planes) resolution of an individual field", + "description": "x, y, and z (number of focal planes) resolution of an individual field", "items": { "type": "integer" - }, + }, "type": "array" - }, + }, "fixation": { - "description": "Description of fixation conditions", + "description": "Description of fixation conditions", "type": "string" - }, + }, "microscope": { - "description": "Microscope used for imaging", + "description": "Microscope used for imaging", "enum": [ - "generic confocal", + "generic confocal", "generic two photon" ] - }, + }, "probes": { - "description": "A file containing information on probe sequence, genes they cover, and colors", + "description": "A file containing information on probe sequence, genes they cover, and colors", "type": "string" } - }, + }, "required": [ "field_counts", - "field_resolution", - "probes" - ], - "title": "imaging", + "field_resolution", + "probes" + ], + "title": "imaging", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index fb58b7a21..7a5133b24 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -1,19 +1,19 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, + "additionalProperties": false, "description": "Information about the immortalized cell line used in the sample", "properties": { "catalog_number": { "description": "The supplier catalogue number for the cell line.", "type": "string" - }, + }, "catalog_url": { "description": "The supplier catalogue URL for the cell line.", "type": "string" - }, + }, "cell_type": { - "description": "What cell type the line was derived from. CLO ontology.", - "$ref": "ontology_json/cell_type_ontology.json" + "description": "What cell type the line was derived from. CLO ontology.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" }, "date_established": { "description": "When the cell line was established.", @@ -21,28 +21,28 @@ "type": "string" }, "disease": { - "description": "A disease associated with the cell line. EFO ontology.", - "$ref": "ontology_json/disease_ontology.json" - }, + "description": "A disease associated with the cell line. EFO ontology.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" + }, "karyotype": { "description": "The karyotype of the cell line.", "type": "string" }, "passage_number": { "description": "The number of passages the cell line as been through.", - "maximum": 1000, - "minimum": 0, + "maximum": 1000, + "minimum": 0, "type": "integer" }, "publication": { - "description": "The publication in which the cell line creation was cited.", - "$ref": "publication.json" + "description": "The publication in which the cell line creation was cited.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json" }, "cell_cycle": { - "$ref": "ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The cell cycle phase, if known." } }, "title": "immortalized_cell_line", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/ingest.json b/json_schema/ingest.json index 9bfe4e14b..2a41ccad4 100644 --- a/json_schema/ingest.json +++ b/json_schema/ingest.json @@ -1,24 +1,24 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "description": "Information added or generated at ingest time." , + "description": "Information added or generated at ingest time.", "properties": { "submissionDate": { - "description": "When project was first submitted to database.", - "format": "date-time", + "description": "When project was first submitted to database.", + "format": "date-time", "type": "string" - }, + }, "submitter_id": { - "description": "ID of contact who first submitted project", + "description": "ID of contact who first submitted project", "type": "string" }, "updateDate": { - "description": "When project was last updated", + "description": "When project was last updated", "format": "date-time", "type": "string" - }, + }, "updater_id": { - "description": "ID of contact who last updated project", + "description": "ID of contact who last updated project", "type": "string" }, "document_id": { @@ -31,9 +31,9 @@ "description": "A unique accession for this entity, provided by the broker.", "type": "string" } - }, "required": [ - "document_id", "submissionDate" + "document_id", + "submissionDate" ] } \ No newline at end of file diff --git a/json_schema/ontology.json b/json_schema/ontology.json index afde80a9d..b25986af3 100644 --- a/json_schema/ontology.json +++ b/json_schema/ontology.json @@ -1,19 +1,19 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", + "$schema": "http://json-schema.org/draft-04/schema#", "description": "A term that may be associated with an ontology term", "properties": { "text": { - "description": "The text for the term as the user provides it.", + "description": "The text for the term as the user provides it.", "type": "string" - }, + }, "ontology": { - "description": "An optional ontology reference in format where prefix_ indicates which ontology", + "description": "An optional ontology reference in format where prefix_ indicates which ontology", "type": "string" } - }, + }, "required": [ "text" - ], - "title": "ontology", + ], + "title": "ontology", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/organoid.json b/json_schema/organoid.json index eb83b910c..b8c853098 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -1,14 +1,14 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A description of an organoid sample.", + "description": "A description of an organoid sample.", "properties": { "model_for_organ": { - "description": "Organ that this organoid is a model system for.", - "$ref": "ontology.json" + "description": "Organ that this organoid is a model system for.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" } }, - "title" : "organoid", - "required":[ + "title": "organoid", + "required": [ "model_for_organ" ] } \ No newline at end of file diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json index a42e3cc79..c0abe7048 100644 --- a/json_schema/primary_cell_line.json +++ b/json_schema/primary_cell_line.json @@ -4,8 +4,8 @@ "description": "Information about the primary cell line used in the sample", "properties": { "cell_type": { - "description": "The cell type that the cell line was derived from. Should be a CLO ontology.", - "$ref": "ontology_json/cell_type_ontology.json" + "description": "The cell type that the cell line was derived from. Should be a CLO ontology.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" }, "date_established": { "description": "When the cell line was established, in date-time format.", @@ -13,8 +13,8 @@ "type": "string" }, "disease": { - "description": "Free text describing any disease association to the cell type. Should be found in EFO ontology.", - "$ref": "ontology_json/disease_ontology.json" + "description": "Free text describing any disease association to the cell type. Should be found in EFO ontology.", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" }, "passage_number": { "description": "The number of passages the cell line has been through.", @@ -23,10 +23,10 @@ "type": "integer" }, "cell_cycle": { - "$ref": "ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The cell cycle phase if the cell line is synchronized growing cells or the phase is known." } }, "title": "primary_cell_line", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/project.json b/json_schema/project.json index 419365ed6..384406f94 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -8,9 +8,9 @@ "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix", "type": "string" } - }, + }, "properties": { - "project_id":{ + "project_id": { "description": "A unique ID for this project.", "type": "string" }, @@ -28,19 +28,19 @@ "type": "string" }, "contributors": { - "description": "List of people contributing to the project.", + "description": "List of people contributing to the project.", "items": { - "$ref": "contact.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" }, "type": "array" }, "core": { - "$ref": "core.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json", "description": "type and schema for this object" }, "experimental_design": { "items": { - "$ref": "ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "A short description of overall experiment type. e.g. \"single cell RNA sequencing.\"" }, "type": "array" @@ -69,7 +69,7 @@ }, "publications": { "items": { - "$ref": "publication.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json", "description": "An array of publication modules." }, "type": "array" @@ -82,9 +82,9 @@ "type": "array" }, "submitters": { - "description": "List of people submitting data to the project.", + "description": "List of people submitting data to the project.", "items": { - "$ref": "contact.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" }, "type": "array" }, @@ -97,10 +97,10 @@ } }, "required": [ - "core", - "contributors", + "core", + "contributors", "project_id" ], "title": "project", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/project_bundle.json b/json_schema/project_bundle.json index 504ef0391..c2b2b58fe 100644 --- a/json_schema/project_bundle.json +++ b/json_schema/project_bundle.json @@ -1,26 +1,29 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A schema for a project bundle" , - "type": "array", - "definitions" : { - "project_ingest" : { - "type": "object", - "required": ["hca_ingest", "content"], - "properties": { - "hca_ingest": { - "$ref": "ingest.json", - "description": "core fields added by HCA ingest service", - "type": "object" - }, - "content": { - "$ref": "project.json", - "description": "Project content", - "type": "object" + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for a project bundle", + "type": "array", + "definitions": { + "project_ingest": { + "type": "object", + "required": [ + "hca_ingest", + "content" + ], + "properties": { + "hca_ingest": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project.json", + "description": "Project content", + "type": "object" + } + } } - } + }, + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project_bundle.json#/definitions/project_ingest" } - }, - "items": { - "$ref": "project_bundle.json#/definitions/project_ingest" - } } \ No newline at end of file diff --git a/json_schema/protocol.json b/json_schema/protocol.json index ec5943e31..4d551b88f 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -1,10 +1,10 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, - "description": "protocol schema generate by tagSchemaToJson from protocol", + "additionalProperties": false, + "definitions": {}, + "description": "protocol schema generate by tagSchemaToJson from protocol", "properties": { - "protocol_id":{ + "protocol_id": { "description": "A unique ID for this protocol.", "type": "string" }, @@ -19,30 +19,30 @@ "batch_number": { "description": "The batch of kit used.", "type": "string" - }, + }, "core": { - "description": "type and schema for this object", - "$ref": "core.json" + "description": "type and schema for this object", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, "pdf": { "description": "A filename of a PDF containing the details of the protocol.", - "pattern": "^.*.pdf$", + "pattern": "^.*.pdf$", "type": "string" - }, + }, "retail_name": { "description": "The retail name of the kit used. e.g SureCell WTA 3' Library Prep Kit", "type": "string" }, "type": { - "$ref": "ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The type of protocol. Ideally an EFO term." } - }, + }, "required": [ - "core", + "core", "protocol_id", "type" - ], - "title": "protocol", + ], + "title": "protocol", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/publication.json b/json_schema/publication.json index 20856d7aa..87ea18210 100644 --- a/json_schema/publication.json +++ b/json_schema/publication.json @@ -1,36 +1,36 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "A publication contains information about a journal article, book, web page or other external available documentation on a project", + "additionalProperties": false, + "description": "A publication contains information about a journal article, book, web page or other external available documentation on a project", "properties": { "authors": { "description": "A list of authors associated with the publication. Should be in \"surname initials\" format. e.g. \"Tran NM\", \"Kowalczyk M\", \"de Silva-Schmidt CKJ\"", "items": { "type": "string" - }, + }, "type": "array" }, "doi": { "description": "The publication digital object identifier (doi), if available. e.g. \"10.1016/j.cell.2016.07.054\"", "type": "string" - }, + }, "pmid": { "description": "A PubMed ID of the publication, if available. e.g. 27565351", "type": "integer" - }, + }, "title": { "description": "The full title of the publication.", "type": "string" - }, + }, "url": { "description": "A URL, preferably not behind a paywall, for the publication.", "type": "string" } }, - "required":[ + "required": [ "authors", "title" ], - "title": "publication", + "title": "publication", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/rna.json b/json_schema/rna.json index d0ca31349..2124c6265 100644 --- a/json_schema/rna.json +++ b/json_schema/rna.json @@ -1,19 +1,19 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, + "additionalProperties": false, + "definitions": {}, "description": "Information about how RNA was converted to cDNA for sequencing.", "properties": { "end_bias": { "description": "The type of end bias the library has. Must be one of 3' bias, 5' bias, 3' end, 5' end, or none.", "enum": [ - "three_prime_end", - "three_prime_bias", - "five_prime_end", - "five_prime_bias", + "three_prime_end", + "three_prime_bias", + "five_prime_end", + "five_prime_bias", "none" ] - }, + }, "library_construction": { "description": "The general approach for sequencing library construction. e.g. Smart-seq, Drop-seq, 10x.", "enum": [ @@ -22,47 +22,49 @@ "SMARTer Ultra Low RNA Kit", "modified smart-seq2", "smart-seq2", - "QUARTZ-Seq", - "10x_v2", - "drop-seq", - "inDrop" + "QUARTZ-Seq", + "10x_v2", + "drop-seq", + "inDrop" ] - }, + }, "library_protocol": { - "description": "RNA preparation protocol", - "pattern": "^P-....-.*$", + "description": "RNA preparation protocol", + "pattern": "^P-....-.*$", "type": "string" - }, + }, "primer": { "description": "Primer used for cDNA synthesis from RNA. Must be either poly-dT or random.", "enum": [ "poly-dT", "random" ] - }, + }, "spike_in": { "description": "Name of RNA spike-in kit. e.g. ERCC.", "enum": [ "ERCC" ] - }, + }, "spike_in_dilution": { "description": "Dilution of RNA spike-in.", - "maximum": 1000000, - "minimum": 1, + "maximum": 1000000, + "minimum": 1, "type": "integer" - }, + }, "strand": { - "description": "Single stranded?", + "description": "Single stranded?", "enum": [ - "both", + "both", "first" ] } - }, + }, "required": [ - "end_bias", "library_construction", "strand" - ], - "title": "rna", + "end_bias", + "library_construction", + "strand" + ], + "title": "rna", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/sample.json b/json_schema/sample.json index f4abaa409..76c331753 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -1,28 +1,60 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a donor and the assay.", "additionalProperties" : false, + "description": "A sample contains information on the biosample that was sequenced or imaged. This includes donor, body part, and anything that comes between removing the sample from a donor and the assay.", + "additionalProperties": false, "patternProperties": { - "^characteristics_.*$": { + "^characteristics_.*$": { "description": "Fields that begin with characteristics_ can contain any value, and the field name can be anything after the prefix.", - "type": "string" - - } + "type": "string" + } }, - "allOf" : [{"required" : ["sample_id", "core", "ncbi_taxon_id"]}], - "oneOf" : [{"required" : ["donor"]}, - {"required" : ["immortalized_cell_line"]}, - {"required" : ["cell_suspension"]}, - {"required" : ["organoid"]}, - {"required" : ["primary_cell_line"]}, - {"required" : ["specimen_from_organism"]} - ], - + "allOf": [ + { + "required": [ + "sample_id", + "core", + "ncbi_taxon_id" + ] + } + ], + "oneOf": [ + { + "required": [ + "donor" + ] + }, + { + "required": [ + "immortalized_cell_line" + ] + }, + { + "required": [ + "cell_suspension" + ] + }, + { + "required": [ + "organoid" + ] + }, + { + "required": [ + "primary_cell_line" + ] + }, + { + "required": [ + "specimen_from_organism" + ] + } + ], "properties": { "core": { "description": "Type and schema for this object.", - "$ref": "core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, - "sample_id":{ + "sample_id": { "description": "A unique ID for this sample.", "type": "string" }, @@ -34,37 +66,36 @@ "description": "A general description of the sample.", "type": "string" }, - "donor" : { - "$ref": "donor.json" + "donor": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/donor.json" }, - "specimen_from_organism" : { - "$ref": "specimen_from_organism.json" + "specimen_from_organism": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/specimen_from_organism.json" }, - "immortalized_cell_line" : { - "$ref": "immortalized_cell_line.json" + "immortalized_cell_line": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/immortalized_cell_line.json" }, - "primary_cell_line" : { - "$ref": "primary_cell_line.json" + "primary_cell_line": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/primary_cell_line.json" }, - "organoid" : { - "$ref": "organoid.json" + "organoid": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/organoid.json" }, - "cell_suspension" : { - "$ref": "cell_suspension.json" + "cell_suspension": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/cell_suspension.json" }, - - "ncbi_taxon_id" : { - "description": "A taxonomy ID (taxonID) from NCBI.", - "type" : "integer" + "ncbi_taxon_id": { + "description": "A taxonomy ID (taxonID) from NCBI.", + "type": "integer" }, "genus_species": { "description": "Scientific binomial name of donor species. e.g. Homo sapiens.", - "$ref": "ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" }, - "derived_from" : { - "type" : "string", - "description" : "If this sample is derived from another sample e.g. a tissue or donor, enter the sample_id for the sample this was derived from", - "comment" : "This field is primarily required for spreadsheet based submissions" + "derived_from": { + "type": "string", + "description": "If this sample is derived from another sample e.g. a tissue or donor, enter the sample_id for the sample this was derived from", + "comment": "This field is primarily required for spreadsheet based submissions" }, "supplementary_files": { "description": "A list of filenames of sample-level supplementary files.", @@ -76,8 +107,8 @@ "sample_accessions": { "type": "object", "description": "One or more accession numbers from a standard archive.", - "additionalProperties" : false, - "properties": { + "additionalProperties": false, + "properties": { "biosd_sample": { "description": "A DDBJ, NCBI, or EBI BioSample ID. Accessions must start with SAMD, SAMN, or SAME.", "pattern": "^SAM[N|E|D][0-9]+$", @@ -92,4 +123,4 @@ } }, "title": "sample" -} +} \ No newline at end of file diff --git a/json_schema/sample_bundle.json b/json_schema/sample_bundle.json index 95d8ec1a0..71bfa2770 100644 --- a/json_schema/sample_bundle.json +++ b/json_schema/sample_bundle.json @@ -1,36 +1,39 @@ { - "$schema": "http://json-schema.org/draft-04/schema#", - "description": "A schema for a sample bundle" , - "type": "array", - "definitions" : { - "sample_ingest" : { - "type": "object", - "required": ["hca_ingest", "content"], - "properties": { - "hca_ingest": { - "$ref": "ingest.json", - "description": "core fields added by HCA ingest service", - "type": "object" - }, - "content": { - "$ref": "sample.json", - "description": "Sample content", - "type": "object" - }, - "derived_from": { - "type": "string" - }, - "derivation_protocols": { - "items": { - "$ref": "protocol.json", - "description": "An array of protocols used in derivation of this sample." - }, - "type": "array" + "$schema": "http://json-schema.org/draft-04/schema#", + "description": "A schema for a sample bundle", + "type": "array", + "definitions": { + "sample_ingest": { + "type": "object", + "required": [ + "hca_ingest", + "content" + ], + "properties": { + "hca_ingest": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "description": "core fields added by HCA ingest service", + "type": "object" + }, + "content": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample.json", + "description": "Sample content", + "type": "object" + }, + "derived_from": { + "type": "string" + }, + "derivation_protocols": { + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", + "description": "An array of protocols used in derivation of this sample." + }, + "type": "array" + } + } } - } + }, + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample_bundle.json#/definitions/sample_ingest" } - }, - "items": { - "$ref": "sample_bundle.json#/definitions/sample_ingest" - } } \ No newline at end of file diff --git a/json_schema/seq.json b/json_schema/seq.json index c9604476d..c4d015b1a 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -1,43 +1,43 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, + "additionalProperties": false, "definitions": { "lanes": { "items": { - "additionalProperties": false, + "additionalProperties": false, "properties": { "number": { - "description": "Which lane number", - "type": "number" - }, + "description": "Which lane number", + "type": "number" + }, "r1": { "description": "File name of first read in paired-end read sequencing assay, or only read for unpaired.", "type": "string" - }, + }, "r2": { "description": "File name of second read in paired-end read assay.", "type": "string" - }, - "i1": { - "description": "A barcode index file. Often index off of first read.", - "type": "string" + }, + "i1": { + "description": "A barcode index file. Often index off of first read.", + "type": "string" }, "i2": { "description": "A barcode index file. Often index off of second read.", "type": "string" } - }, + }, "required": [ "r1" ], "title": "A sequencing lane.", "type": "object" }, - "title": "lane array", + "title": "lane array", "type": "array" } - }, - "description": "Information about how a sample was sequenced.", + }, + "description": "Information about how a sample was sequenced.", "properties": { "insdc_experiment": { "description": "An INSDC (International Nucleotide Sequence Database Collaboration) experiment accession. Accession must start with DRX, ERX, or SRX.", @@ -72,7 +72,7 @@ ] }, "lanes": { - "$ref": "seq.json#/definitions/lanes" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json#/definitions/lanes" }, "library_construction": { "description": "How the DNA sequencing library was prepared. e.g. Nextera XT, TrueSeq.", @@ -105,16 +105,16 @@ }, "umi_barcode": { "description": "Information about unique molecular identifier (UMI) barcode sequences.", - "$ref": "barcode.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" } - }, + }, "required": [ "instrument_model", "instrument_platform", "lanes", - "molecule", + "molecule", "paired_ends" - ], - "title": "seq", + ], + "title": "seq", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 519aac864..19ddcc834 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -1,28 +1,28 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "Contains information on single cell aspects of an assay.", + "additionalProperties": false, + "description": "Contains information on single cell aspects of an assay.", "properties": { "cell_barcode": { "description": "Information about cell identifier barcode.", - "$ref": "barcode.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" }, "cell_handling": { "description": "How cells are separated. e.g. FACS, drop-seq, 10X_v2, Fluidigm C1.", "enum": [ - "10x_v2", - "FACS", - "Fluidigm C1", - "drop-seq", - "inDrop", - "mouth pipette", + "10x_v2", + "FACS", + "Fluidigm C1", + "drop-seq", + "inDrop", + "mouth pipette", "bulk" ] } - }, + }, "required": [ "cell_handling" - ], - "title": "single_cell", + ], + "title": "single_cell", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 90fe87b32..47b7b012a 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -1,25 +1,25 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, + "additionalProperties": false, "description": "Information about the specimen that was extracted from the donor organism.", "title": "specimen_from_organism", "type": "object", "properties": { "body_part": { - "$ref": "ontology_json/body_part_ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, "organ": { - "$ref": "ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The organ that the sample came from. e.g. liver, spleen. Blood and connective tissue count as organs." - }, + }, "state_of_specimen": { - "$ref": "state_of_specimen.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." } - }, + }, "required": [ - "body_part", - "organ" + "body_part", + "organ" ] -} +} \ No newline at end of file diff --git a/json_schema/state_of_specimen.json b/json_schema/state_of_specimen.json index 9c54ed2c5..4867f0cb4 100644 --- a/json_schema/state_of_specimen.json +++ b/json_schema/state_of_specimen.json @@ -1,54 +1,54 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "definitions": {}, - "description": "State of body part at collection and how it was preserved after removal and/or cell enrichment", + "additionalProperties": false, + "definitions": {}, + "description": "State of body part at collection and how it was preserved after removal and/or cell enrichment", "properties": { "autolysis_score": { "description": "State of tissue breakdown due to self-digestion. Must be one of: none, mild, moderate.", "enum": [ - "none", - "mild", + "none", + "mild", "moderate" ] - }, + }, "gross_description": { "description": "Color, size, and other aspects of specimen as visible to naked eye.", "type": "string" - }, + }, "gross_image": { "description": "List of filenames of photographs of body part without magnification. Must be of format JPEG, TIFF, or PNG.", "items": { - "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", + "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", "type": "string" - }, + }, "type": "array" - }, + }, "ischemic_time": { "description": "Duration of time, in seconds, that the body part had insufficient blood supply.", - "maximum": 100000, - "minimum": 0, + "maximum": 100000, + "minimum": 0, "type": "integer" - }, + }, "microscopic_description": { "description": "How the sample looks under the microscope and how it compares with normal cells.", "type": "string" - }, + }, "microscopic_image": { "description": "List of filenames of photographs of body part under microscope. Must be of format JPEG, TIFF, or PNG.", "items": { - "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", + "pattern": "^.*.jpg$|^.*.jpeg$|^.*.tiff$|^.*.png$", "type": "string" - }, + }, "type": "array" - }, + }, "postmortem_interval": { "description": "Duration of time, in seconds, between when death is declared and when the tissue is preserved or processed.", - "maximum": 100000, - "minimum": 0, + "maximum": 100000, + "minimum": 0, "type": "integer" } }, "title": "state_of_specimen", "type": "object" -} +} \ No newline at end of file diff --git a/json_schema/submission.json b/json_schema/submission.json index ade6edccd..b5f86d45b 100644 --- a/json_schema/submission.json +++ b/json_schema/submission.json @@ -1,87 +1,87 @@ { "$schema": "http://json-schema.org/draft-04/schema#", "additionalProperties": false, - "definitions" : { - "transfer_service_version" : { - "additionalProperties" : false, - "type" : "string" - }, - "submitted_files" : { - "additionalProperties" : false, - "type" : "array", - "items" : { - "$ref" : "submission.json#/definitions/file" - } - }, - "file" : { - "type" : "object", - "additionalProperties" : false, - "properties" : { - "name" : { - "description" : "Name of the file", - "type" : "string" - }, - "content_type" :{ - "description" : "type of file e.g hca-sample-json, hca-assay-json, hca-rnaseq-fastq-gz", - "type" : "string" - }, - "size" : { - "description" : "Length of file in bytes", - "type" : "integer" - }, - "id" : { - "description" : "URI of the Data Storage System file resource that describes this file", - "type" : "string" - }, - "checksums" : { - "type" : "object", - "properties" : { - "s3etag" : { - "description" : "S3 ETAG checksum of this file", - "type" : "string" - }, - "sha1" : { - "description" : "SHA-1 checksum of this file", - "type" : "string" - }, - "sha256" : { - "description" : "SHA-256 checksum of this file", - "type" : "string" - }, - "crc32" : { - "description" : "CRC-32 checksum of this file", - "type" : "string" - } - }, - "required" : [ - "s3etag", - "sha1", - "sha256", - "crc32" - ] - } - }, - "required" : [ - "name", - "content_type", - "size", - "id", - "checksums" - ] - } + "definitions": { + "transfer_service_version": { + "additionalProperties": false, + "type": "string" + }, + "submitted_files": { + "additionalProperties": false, + "type": "array", + "items": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/file" + } + }, + "file": { + "type": "object", + "additionalProperties": false, + "properties": { + "name": { + "description": "Name of the file", + "type": "string" + }, + "content_type": { + "description": "type of file e.g hca-sample-json, hca-assay-json, hca-rnaseq-fastq-gz", + "type": "string" + }, + "size": { + "description": "Length of file in bytes", + "type": "integer" + }, + "id": { + "description": "URI of the Data Storage System file resource that describes this file", + "type": "string" + }, + "checksums": { + "type": "object", + "properties": { + "s3etag": { + "description": "S3 ETAG checksum of this file", + "type": "string" + }, + "sha1": { + "description": "SHA-1 checksum of this file", + "type": "string" + }, + "sha256": { + "description": "SHA-256 checksum of this file", + "type": "string" + }, + "crc32": { + "description": "CRC-32 checksum of this file", + "type": "string" + } + }, + "required": [ + "s3etag", + "sha1", + "sha256", + "crc32" + ] + } + }, + "required": [ + "name", + "content_type", + "size", + "id", + "checksums" + ] + } }, - "properties" : { - "transfer_service_version" : { - "$ref" : "submission.json#/definitions/transfer_service_version" - }, - "submitted_files" : { - "$ref" : "submission.json#/definitions/submitted_files" - } + "properties": { + "transfer_service_version": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/transfer_service_version" + }, + "submitted_files": { + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/submitted_files" + } }, - "required" : [ - "transfer_service_version", - "submitted_files" + "required": [ + "transfer_service_version", + "submitted_files" ], - "title" : "submission", - "type" : "object" -} + "title": "submission", + "type": "object" +} \ No newline at end of file diff --git a/json_schema/well.json b/json_schema/well.json index b32990a8f..03eed4fdb 100644 --- a/json_schema/well.json +++ b/json_schema/well.json @@ -1,16 +1,16 @@ { "$schema": "http://json-schema.org/draft-04/schema#", - "additionalProperties": false, - "description": "This describes the well inside the plate or fluidics chip where sample came from.", + "additionalProperties": false, + "description": "This describes the well inside the plate or fluidics chip where sample came from.", "properties": { "col": { "description": "Well column in plate.", "type": "string" - }, + }, "name": { "description": "A name for the well. Should be unique for the plate", "type": "string" - }, + }, "plate": { "description": "An ID for the plate that the well is located on.", "type": "string" @@ -18,12 +18,12 @@ "quality": { "description": "Note on how good cell looks if imaged in well before sequencing.", "enum": [ - "OK", - "control, 2-cell well", - "control, empty well", + "OK", + "control, 2-cell well", + "control, empty well", "low quality cell" ] - }, + }, "row": { "description": "Well row in plate.", "type": "string" @@ -31,4 +31,4 @@ }, "title": "well", "type": "object" -} +} \ No newline at end of file From 5eeab02f06d5389c060017f183d15b9ac2a0e425 Mon Sep 17 00:00:00 2001 From: Dani Welter Date: Tue, 21 Nov 2017 12:11:46 +0000 Subject: [PATCH 128/128] Changed tag from 4.0 to 4.0.0 --- json_schema/analysis.json | 8 ++++---- json_schema/assay.json | 10 +++++----- json_schema/assay_bundle.json | 8 ++++---- json_schema/cell_suspension.json | 6 +++--- json_schema/death.json | 2 +- json_schema/donor.json | 12 ++++++------ json_schema/file.json | 2 +- json_schema/immortalized_cell_line.json | 8 ++++---- json_schema/organoid.json | 2 +- json_schema/primary_cell_line.json | 6 +++--- json_schema/project.json | 10 +++++----- json_schema/project_bundle.json | 6 +++--- json_schema/protocol.json | 4 ++-- json_schema/sample.json | 16 ++++++++-------- json_schema/sample_bundle.json | 8 ++++---- json_schema/seq.json | 4 ++-- json_schema/single_cell.json | 2 +- json_schema/specimen_from_organism.json | 6 +++--- json_schema/submission.json | 6 +++--- 19 files changed, 63 insertions(+), 63 deletions(-) diff --git a/json_schema/analysis.json b/json_schema/analysis.json index 330424601..32e93240b 100644 --- a/json_schema/analysis.json +++ b/json_schema/analysis.json @@ -7,7 +7,7 @@ "type": "array", "items": { "type": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/task" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/task" } } }, @@ -30,7 +30,7 @@ "outputs": { "items": { "type": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/file" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/file" } }, "description": "Output generated by the pipeline run.", @@ -58,7 +58,7 @@ "inputs": { "items": { "type": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/parameter" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/analysis.json#/definitions/parameter" } }, "type": "array", @@ -78,7 +78,7 @@ }, "core": { "description": "Type and schema for this object.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" } }, "type": "object", diff --git a/json_schema/assay.json b/json_schema/assay.json index 1e6d14c61..c1ed8f9f4 100644 --- a/json_schema/assay.json +++ b/json_schema/assay.json @@ -6,7 +6,7 @@ "properties": { "core": { "description": "Type and schema for this object.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, "assay_id": { "description": "A unique ID for this assay.", @@ -22,19 +22,19 @@ }, "imaging": { "description": "Information on image based RNA quantification assays", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/imaging.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/imaging.json" }, "rna": { "description": "Information about how RNA was converted to cDNA.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/rna.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/rna.json" }, "seq": { "description": "Information about how a cDNA sample was sequenced.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json" }, "single_cell": { "description": "Information on single-cell aspects of an assay.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/single_cell.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/single_cell.json" } }, "required": [ diff --git a/json_schema/assay_bundle.json b/json_schema/assay_bundle.json index a3cce74bc..57db6815a 100644 --- a/json_schema/assay_bundle.json +++ b/json_schema/assay_bundle.json @@ -11,18 +11,18 @@ ], "properties": { "hca_ingest": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", "description": "core fields added by HCA ingest service", "type": "object" }, "content": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay.json", "description": "Assay content", "type": "object" }, "derivation_protocols": { "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", "description": "An array of protocols used in derivation of this sample." }, "type": "array" @@ -31,6 +31,6 @@ } }, "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay_bundle.json#/definitions/assay_ingest" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/assay_bundle.json#/definitions/assay_ingest" } } \ No newline at end of file diff --git a/json_schema/cell_suspension.json b/json_schema/cell_suspension.json index ae70d8311..9681a2b33 100644 --- a/json_schema/cell_suspension.json +++ b/json_schema/cell_suspension.json @@ -6,14 +6,14 @@ "description": "Cell types present in the suspension.", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" } }, "enrichment": { "description": "How sample was enriched for specific cell type(s).", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/enrichment.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/enrichment.json" } }, "total_estimated_cells": { @@ -23,7 +23,7 @@ "type": "number" }, "well": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/well.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/well.json", "description": "Information about wells in a plate or chip used for single-cell isolation." } }, diff --git a/json_schema/death.json b/json_schema/death.json index b92d46e97..ac9db2e01 100644 --- a/json_schema/death.json +++ b/json_schema/death.json @@ -6,7 +6,7 @@ "properties": { "cause_of_death": { "description": "Cause of death from death report for human donor, from research lab for mouse.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" }, "cold_perfused": { "description": "Yes if perfused with cold fluid to help preserve tissues before heart stopped. No otherwise.", diff --git a/json_schema/donor.json b/json_schema/donor.json index ceae74ac4..2dca89638 100644 --- a/json_schema/donor.json +++ b/json_schema/donor.json @@ -26,7 +26,7 @@ "description": "An array of ontology terms from EMBL-EBI's Ancestry Ontology describing ancestral groups, uncategorised ancestral groups, and population isolates.", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" } }, "body_mass_index": { @@ -37,17 +37,17 @@ }, "death": { "description": "Information about conditions of death (or info that donor was living at time of collection).", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/death.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/death.json" }, "development_stage": { "description": "More detailed (especially for embryos) version of life_stage. e.g. \"E9\" or \"P17\" for mouse.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" }, "disease": { "description": "Short description of disease status of individual.", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" } }, "genotype": { @@ -77,7 +77,7 @@ "description": "List of medications the donor was currently taking at time of sample donation.", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" } }, "nutritional_state": { @@ -105,7 +105,7 @@ "description": "The name of th mouse inbred strain. e.g. C57BL/6.", "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" } }, "weight": { diff --git a/json_schema/file.json b/json_schema/file.json index 225b41d79..2d693a804 100644 --- a/json_schema/file.json +++ b/json_schema/file.json @@ -22,7 +22,7 @@ }, "core": { "description": "Type and schema for this object.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" } }, "required": [ diff --git a/json_schema/immortalized_cell_line.json b/json_schema/immortalized_cell_line.json index 7a5133b24..72d954a27 100644 --- a/json_schema/immortalized_cell_line.json +++ b/json_schema/immortalized_cell_line.json @@ -13,7 +13,7 @@ }, "cell_type": { "description": "What cell type the line was derived from. CLO ontology.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" }, "date_established": { "description": "When the cell line was established.", @@ -22,7 +22,7 @@ }, "disease": { "description": "A disease associated with the cell line. EFO ontology.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" }, "karyotype": { "description": "The karyotype of the cell line.", @@ -36,10 +36,10 @@ }, "publication": { "description": "The publication in which the cell line creation was cited.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json" }, "cell_cycle": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The cell cycle phase, if known." } }, diff --git a/json_schema/organoid.json b/json_schema/organoid.json index b8c853098..111f5ef86 100644 --- a/json_schema/organoid.json +++ b/json_schema/organoid.json @@ -4,7 +4,7 @@ "properties": { "model_for_organ": { "description": "Organ that this organoid is a model system for.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" } }, "title": "organoid", diff --git a/json_schema/primary_cell_line.json b/json_schema/primary_cell_line.json index c0abe7048..0c5eb7888 100644 --- a/json_schema/primary_cell_line.json +++ b/json_schema/primary_cell_line.json @@ -5,7 +5,7 @@ "properties": { "cell_type": { "description": "The cell type that the cell line was derived from. Should be a CLO ontology.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/cell_type_ontology.json" }, "date_established": { "description": "When the cell line was established, in date-time format.", @@ -14,7 +14,7 @@ }, "disease": { "description": "Free text describing any disease association to the cell type. Should be found in EFO ontology.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/disease_ontology.json" }, "passage_number": { "description": "The number of passages the cell line has been through.", @@ -23,7 +23,7 @@ "type": "integer" }, "cell_cycle": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The cell cycle phase if the cell line is synchronized growing cells or the phase is known." } }, diff --git a/json_schema/project.json b/json_schema/project.json index 384406f94..afee5a19d 100644 --- a/json_schema/project.json +++ b/json_schema/project.json @@ -30,17 +30,17 @@ "contributors": { "description": "List of people contributing to the project.", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" }, "type": "array" }, "core": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json", "description": "type and schema for this object" }, "experimental_design": { "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "A short description of overall experiment type. e.g. \"single cell RNA sequencing.\"" }, "type": "array" @@ -69,7 +69,7 @@ }, "publications": { "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/publication.json", "description": "An array of publication modules." }, "type": "array" @@ -84,7 +84,7 @@ "submitters": { "description": "List of people submitting data to the project.", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/contact.json" }, "type": "array" }, diff --git a/json_schema/project_bundle.json b/json_schema/project_bundle.json index c2b2b58fe..6ff3fdd90 100644 --- a/json_schema/project_bundle.json +++ b/json_schema/project_bundle.json @@ -11,12 +11,12 @@ ], "properties": { "hca_ingest": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", "description": "core fields added by HCA ingest service", "type": "object" }, "content": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project.json", "description": "Project content", "type": "object" } @@ -24,6 +24,6 @@ } }, "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project_bundle.json#/definitions/project_ingest" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/project_bundle.json#/definitions/project_ingest" } } \ No newline at end of file diff --git a/json_schema/protocol.json b/json_schema/protocol.json index 4d551b88f..84a3cd490 100644 --- a/json_schema/protocol.json +++ b/json_schema/protocol.json @@ -22,7 +22,7 @@ }, "core": { "description": "type and schema for this object", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, "pdf": { "description": "A filename of a PDF containing the details of the protocol.", @@ -34,7 +34,7 @@ "type": "string" }, "type": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The type of protocol. Ideally an EFO term." } }, diff --git a/json_schema/sample.json b/json_schema/sample.json index 76c331753..4cf887b16 100644 --- a/json_schema/sample.json +++ b/json_schema/sample.json @@ -52,7 +52,7 @@ "properties": { "core": { "description": "Type and schema for this object.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/core.json" }, "sample_id": { "description": "A unique ID for this sample.", @@ -67,22 +67,22 @@ "type": "string" }, "donor": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/donor.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/donor.json" }, "specimen_from_organism": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/specimen_from_organism.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/specimen_from_organism.json" }, "immortalized_cell_line": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/immortalized_cell_line.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/immortalized_cell_line.json" }, "primary_cell_line": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/primary_cell_line.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/primary_cell_line.json" }, "organoid": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/organoid.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/organoid.json" }, "cell_suspension": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/cell_suspension.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/cell_suspension.json" }, "ncbi_taxon_id": { "description": "A taxonomy ID (taxonID) from NCBI.", @@ -90,7 +90,7 @@ }, "genus_species": { "description": "Scientific binomial name of donor species. e.g. Homo sapiens.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json" }, "derived_from": { "type": "string", diff --git a/json_schema/sample_bundle.json b/json_schema/sample_bundle.json index 71bfa2770..b444cdbea 100644 --- a/json_schema/sample_bundle.json +++ b/json_schema/sample_bundle.json @@ -11,12 +11,12 @@ ], "properties": { "hca_ingest": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ingest.json", "description": "core fields added by HCA ingest service", "type": "object" }, "content": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample.json", "description": "Sample content", "type": "object" }, @@ -25,7 +25,7 @@ }, "derivation_protocols": { "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/protocol.json", "description": "An array of protocols used in derivation of this sample." }, "type": "array" @@ -34,6 +34,6 @@ } }, "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample_bundle.json#/definitions/sample_ingest" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/sample_bundle.json#/definitions/sample_ingest" } } \ No newline at end of file diff --git a/json_schema/seq.json b/json_schema/seq.json index c4d015b1a..bab62819f 100644 --- a/json_schema/seq.json +++ b/json_schema/seq.json @@ -72,7 +72,7 @@ ] }, "lanes": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json#/definitions/lanes" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/seq.json#/definitions/lanes" }, "library_construction": { "description": "How the DNA sequencing library was prepared. e.g. Nextera XT, TrueSeq.", @@ -105,7 +105,7 @@ }, "umi_barcode": { "description": "Information about unique molecular identifier (UMI) barcode sequences.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" } }, "required": [ diff --git a/json_schema/single_cell.json b/json_schema/single_cell.json index 19ddcc834..32c2d6c27 100644 --- a/json_schema/single_cell.json +++ b/json_schema/single_cell.json @@ -5,7 +5,7 @@ "properties": { "cell_barcode": { "description": "Information about cell identifier barcode.", - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/barcode.json" }, "cell_handling": { "description": "How cells are separated. e.g. FACS, drop-seq, 10X_v2, Fluidigm C1.", diff --git a/json_schema/specimen_from_organism.json b/json_schema/specimen_from_organism.json index 47b7b012a..1a8ca8a22 100644 --- a/json_schema/specimen_from_organism.json +++ b/json_schema/specimen_from_organism.json @@ -6,15 +6,15 @@ "type": "object", "properties": { "body_part": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/body_part_ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology_json/body_part_ontology.json", "description": "A more detailed position within the body than the term given in the organ field." }, "organ": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/ontology.json", "description": "The organ that the sample came from. e.g. liver, spleen. Blood and connective tissue count as organs." }, "state_of_specimen": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/state_of_specimen.json", + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/state_of_specimen.json", "description": "State of body_part at collection and how it was preserved after removal." } }, diff --git a/json_schema/submission.json b/json_schema/submission.json index b5f86d45b..8993c917a 100644 --- a/json_schema/submission.json +++ b/json_schema/submission.json @@ -10,7 +10,7 @@ "additionalProperties": false, "type": "array", "items": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/file" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/file" } }, "file": { @@ -72,10 +72,10 @@ }, "properties": { "transfer_service_version": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/transfer_service_version" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/transfer_service_version" }, "submitted_files": { - "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/submitted_files" + "$ref": "https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0.0/json_schema/https://raw.githubusercontent.com/HumanCellAtlas/metadata-schema/4.0/json_schema/submission.json#/definitions/submitted_files" } }, "required": [