diff --git a/flepimop/gempyor_pkg/src/gempyor/batch.py b/flepimop/gempyor_pkg/src/gempyor/batch.py index a550e2b72..e8bbc78a9 100644 --- a/flepimop/gempyor_pkg/src/gempyor/batch.py +++ b/flepimop/gempyor_pkg/src/gempyor/batch.py @@ -1051,15 +1051,15 @@ def _click_submit(ctx: click.Context = mock_context, **kwargs: Any) -> None: \b ```bash - $ flepimop submit --jobs 4 \ # With legacy inference jobs refers to chains - --simulations 20 \ # The number of iterations per a chain - --blocks 1 \ # The number of consecutive blocks to run - --slurm \ # Use slurm, shorthand for `--batch-system slurm` - --project-path $(pwd) \ # Manually specify the project path - --email me@college.edu \ # Use slurm's built-in email alerts for the job - --skip-checkout \ # Do not create a new branch in the project repo - -vvv \ # Use the max verbosity - --dry-run \ # Do not actually submit the job via `sbatch`. + $ flepimop submit --jobs 4 \\ # With legacy inference jobs refers to chains + --simulations 20 \\ # The number of iterations per a chain + --blocks 1 \\ # The number of consecutive blocks to run + --slurm \\ # Use slurm, shorthand for `--batch-system slurm` + --project-path $(pwd) \\ # Manually specify the project path + --email me@college.edu \\ # Use slurm's built-in email alerts for the job + --skip-checkout \\ # Do not create a new branch in the project repo + -vvv \\ # Use the max verbosity + --dry-run \\ # Do not actually submit the job via `sbatch`. config_sample_2pop_inference.yml ``` @@ -1068,16 +1068,16 @@ def _click_submit(ctx: click.Context = mock_context, **kwargs: Any) -> None: \b ```bash - $ flepimop submit --jobs 10 \ # See before - --simulations 400 \ # See before - --blocks 1 \ # See before - --slurm \ # See before - --partition dedicated_slurm_partition \ # Submit to a particular slurm partition - --simulation-time 30s \ # Specify the time limit per simulation - --initial-time 5min \ # Specify the initial time limit - --conda-env custom-flepimop-env \ # Specify a custom conda env to use - --cpus 4 \ # Use 4 CPUs per a job - -vvv \ # Use the max verbosity + $ flepimop submit --jobs 10 \\ # See before + --simulations 400 \\ # See before + --blocks 1 \\ # See before + --slurm \\ # See before + --partition dedicated_slurm_partition \\ # Submit to a particular slurm partition + --simulation-time 30s \\ # Specify the time limit per simulation + --initial-time 5min \\ # Specify the initial time limit + --conda-env custom-flepimop-env \\ # Specify a custom conda env to use + --cpus 4 \\ # Use 4 CPUs per a job + -vvv \\ # Use the max verbosity config_sample_2pop_inference.yml ``` """