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ephys.php
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ephys.php
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<?php
include ("permission_check.php");
?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<!-- Google Analytics Tracking -->
<?php include_once("analytics.php") ?>
<meta http-equiv="Content-Type" content="text/html" />
<script type="text/javascript" src="style/resolution.js"></script>
<link rel="stylesheet" href="function/menu_support_files/menu_main_style.css" type="text/css" />
<script src="jqGrid-4/js/jquery-1.11.0.min.js" type="text/javascript"></script>
<script src="jqGrid-4/js/i18n/grid.locale-en.js" type="text/javascript"></script>
<script src="jqGrid-4/js/jquery.jqGrid.src.js" type="text/javascript"></script>
<script>
jQuery(document).ready(function() {
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_markers.php',
success: function() {}
});
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_ephys.php',
success: function() {}
});
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_morphology.php',
success: function() {}
});
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_connectivity.php',
success: function() {}
});
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_firing.php',
success: function() {}
});
$.ajax({
type: 'GET',
cache: false,
contentType: 'application/json; charset=utf-8',
url: 'load_matrix_session_firing_parameter.php',
success: function() {}
});
$('div#menu_main_button_new_clr').css('display','block');
});
</script>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<?php
//include ("access_db.php");
$jsonStr = $_SESSION['ephys'];
//include ("getEphys.php");
include ("function/ephys_unit_table.php");
include ("function/ephys_num_decimals_table.php");
require_once('class/class.type.php');
require_once('class/class.property.php');
require_once('class/class.evidencepropertyyperel.php');
require_once('class/class.epdataevidencerel.php');
require_once('class/class.epdata.php');
require_once('class/class.temporary_result_neurons.php');
$type = new type($class_type);
$type -> retrive_id();
$nTypes = $type->getNumber_type();
$research = "";
if(isset($_REQUEST['research']))
$research = $_REQUEST['research'];
$table_result ="";
if(isset($_REQUEST['table_result']))
$table_result = $_REQUEST['table_result'];
$property = new property($class_property);
$evidencepropertyyperel = new evidencepropertyyperel($class_evidence_property_type_rel);
$epdataevidencerel = new epdataevidencerel($class_epdataevidencerel);
$epdata = new epdata($class_epdata);
?>
<?php include ("function/icon.html"); ?>
<title>Ephys Matrix</title>
<link rel="stylesheet" type="text/css" media="screen" href="jqGrid-4/css/ui-lightness/jquery-ui-1.10.3.custom.css" />
<link rel="stylesheet" type="text/css" media="screen" href="jqGrid-4/css/ui.jqgrid.css" />
<script type="text/javascript" src="style/resolution.js"></script>
<style>
.ui-jqgrid tr.jqgrow td
{
height:auto !important;
}
.ui-jqgrid tr.jqgrow td:nth-child(2)
{
height:18px !important;
text-align:left;
}
.ui-jqgrid .ui-jqgrid-htable th div
{
position:relative;
height: auto
}
.highlighted{
border-right: solid 1px Chartreuse !important;
border-left: solid 1px Chartreuse !important;
border-bottom:solid 1px Chartreuse !important;
}
.highlighted_top{
border: solid 1px Chartreuse !important;
}
#jqgh_nGrid_Vrest,#jqgh_nGrid_Rin,#jqgh_nGrid_Tm,#jqgh_nGrid_Vthresh,#jqgh_nGrid_FastAhp,#jqgh_nGrid_Apampl,#jqgh_nGrid_Apwidth,#jqgh_nGrid_MaxFr,#jqgh_nGrid_SlowAhp,#jqgh_nGrid_Sagratio
{
cursor:auto;
}
.header_highlight
{
color:#66FFFF;
}
</style>
<?php
if ($_SESSION['perm'] == NULL)
{
$_SESSION['perm'] = 1;
?>
<script>
window.onload = function()
{
if (!window.location.search)
{
setTimeout("window.location+='?refreshed';", 0);
}
}
</script>
<?php
}
?>
<script type="text/javascript">
$(function(){
var dataStr = <?php echo $jsonStr?>;
function Merger(gridName,cellName){
var mya = $("#" + gridName + "").getDataIDs();
var rowCount = mya.length;
var rowSpanCount = 1;
var countRows = 0;
var lastRowDelete =0;
var firstElement = 0;
for(var i=0;i<=rowCount;i=i+countRows)
{
var before = $("#" + gridName + "").jqGrid('getRowData', mya[i]); // Fetch me the data for the first row
for (j = i+1; j <=rowCount; j++)
{
var end = $("#" + gridName + "").jqGrid('getRowData', mya[j]); // Fetch me the data for the next row
if (before[cellName] == end[cellName]) // If the previous row and the next row data are the same
{
$("#" + gridName + "").setCell(mya[j], cellName,' ');
$("tr#"+j+" td#type"+j).css("border-bottom","none");
if(rowSpanCount > 1) // For the first row Don't delete the cell and its contents
{
$("tr#"+j+" td#type"+j).css("border-bottom","none");
}
else
{
firstElement = j;
}
rowSpanCount++;
}
else
{
$("tr#"+j).css("border-bottom", "2px red");
countRows = rowSpanCount;
rowSpanCount = 1;
break;
}
}
}
}
var research = "<?php echo $research?>";
var table = "<?php echo $table_result?>";
$("#nGrid").jqGrid({
datatype: "jsonstring",
datastr: dataStr,
/* url:'getEphys.php',
datatype: 'json',
mtype: 'GET',
ajaxGridOptions :{
contentType : "application/json"
},
postData: {
researchVar: research,
table_result : table
}, */
colNames:['','Neuron Type','Neurite<br/>Pattern','V<sub>rest</sub><br/><small>(mV)</small>','R<sub>in</sub><br/><small>(MΩ)</small>','τ<sub>m</sub><br/><small>(ms)</small>','V<sub>thresh</sub><br/><small>(mV)</small>','Fast AHP<br/><small>(mV)</small>','AP<sub>ampl</sub><br/><small>(mV)</small>','AP<sub>width</sub><br/><small>(ms)</small>','Max F.R.<br/><small>(Hz)</small>','Slow AHP<br/><small>(mV)</small>','Sag ratio'],
colModel :[
{name:'type', index:'type', width:50,sortable:false,cellattr: function (rowId, tv, rawObject, cm, rdata) {
return 'id=\'type' + rowId + "\'";
} },
{name:'Neuron type', index:'nickname', width:275,sortable:false},
{name:'NeuritePattern', index:'NeuritePattern', width:80,sortable:false, hidden: true},
//,searchoptions: {sopt: ['bw','bn','cn','in','ni','ew','en','nc']}},
{name:'Vrest', index:'Vrest', width:75,height:130,search:false,sortable:false},
{name:'Rin', index:'Rin', width:75,height:130,search:false,sortable:false},
{name:'Tm', index:'Tm', width:75,height:150,search:false,sortable:false,
cellattr: function(rowId, tv, rawObject, cm, rdata)
{
return 'style="border-right:medium solid #C08181;"';
}
},
{name:'Vthresh', index:'Vthresh', width:75,height:150,search:false,sortable:false,
cellattr: function(rowId, tv, rawObject, cm, rdata)
{
return 'style="border-left:medium solid #770000;"';
}
},
{name:'FastAhp', index:'FastAhp', width:75,height:150,search:false,sortable:false},
{name:'Apampl', index:'Apampl', width:75,height:150,search:false,sortable:false},
{name:'Apwidth', index:'Apwidth', width:75,height:150,search:false,sortable:false,
cellattr: function(rowId, tv, rawObject, cm, rdata)
{
return 'style="border-right:medium solid #C08181;"';
}
},
{name:'MaxFr', index:'MaxFr', width:75,height:150,search:false,sortable:false,
cellattr: function(rowId, tv, rawObject, cm, rdata)
{
return 'style="border-left:medium solid #770000;"';
}
},
{name:'SlowAhp', index:'SlowAhp', width:75,height:150,search:false,sortable:false},
{name:'Sagratio', index:'CR', width:75,height:150,search:false,sortable:false}
],
rowNum:<?php echo $nTypes ?>,
rowList:[<?php echo $nTypes ?>],
// rowNum:176,
// rowList:[176],
viewrecords: true,
gridview: true,
jsonReader : {
page: "page",
total: "total",
records: "records",
root:"rows",
repeatitems: true,
onSelectRow: function() {
return false;
},
cell:"cell",
id: "invid"
},
scrollerbar:true,
height:"440",
width:"85%",
gridComplete: function () {
var gridName = "nGrid"; // Access the grid Name
Merger(gridName,"type");
HideShowColumns();
}
});
$("#jqgh_nGrid_Vrest").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Vrest").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Rin").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Rin").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Tm").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Tm").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Vthresh").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Vthresh").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_FastAhp").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_FastAhp").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Apampl").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Apampl").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Apwidth").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Apwidth").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_MaxFr").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_MaxFr").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Vrest").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Vrest").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_SlowAhp").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_SlowAhp").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
$("#jqgh_nGrid_Sagratio").mouseover(function(e) {
$(this).addClass('header_highlight');
});
$("#jqgh_nGrid_Sagratio").mouseout(function(e) {
$(this).removeClass('header_highlight');
});
var cm = $("#nGrid").jqGrid('getGridParam', 'colModel');
$("#nGrid").mouseover(function(e) {
var count = $("#nGrid").jqGrid('getGridParam', 'records') + 1;
var $td = $(e.target).closest('td'), $tr = $td.closest('tr.jqgrow'),
rowId = $tr.attr('id');
if (rowId) {
var ci = $.jgrid.getCellIndex($td[0]); // works mostly as $td[0].cellIndex
$row = "#"+rowId+" td";
$($row).addClass('highlighted_top');
/* for(var i=0;i<count;i++)
{
$colSelected = "tr#"+i+" td:eq("+ci+")";
$($colSelected).addClass('highlighted');
} */
}
});
$("#nGrid").mouseout(function(e) {
var count = $("#nGrid").jqGrid('getGridParam', 'records') + 1;
var $td = $(e.target).closest('td'), $tr = $td.closest('tr.jqgrow'),
rowId = $tr.attr('id'), ci;
if (rowId) {
ci = $.jgrid.getCellIndex($td[0]); // works mostly as $td[0].cellIndex
$row = "#"+rowId+" td";
$($row).removeClass('highlighted_top');
/* for(var i=0;i<count;i++)
{
$colSelected = "tr#"+i+" td:eq("+ci+")";
$($colSelected).removeClass('highlighted');
} */
}
});
});
function HideShowColumns ()
{
var myGrid = $("#nGrid");
$("#checkbox1").click(function() {
if ($("#checkbox1").is(':checked')) {
myGrid.jqGrid('showCol', ["NeuritePattern"]);
}
else {
myGrid.jqGrid('setGridParam', {shrinkToFit: true});
myGrid.jqGrid('setGridParam', {scrollerbar: false});
myGrid.jqGrid('hideCol', ["NeuritePattern"]);
}
});
}
</script>
</head>
<body>
<!-- COPY IN ALL PAGES -->
<?php
include ("function/title.php");
include ("function/menu_main.php");
?>
<div class='title_area'>
<form id="myform">
<font class="font1">Browse electrophysiology matrix </font>
<input type="checkbox" style="background-color: rgb(0, 0, 153);" value="check1" name="check1" id="checkbox1"><span style="color: rgb(0, 0, 153);">Neurite Patterns </span></input>
</form>
</div>
<!-- submenu no tabs
<div class='sub_menu'>
<?php
if ($research);
else
{
?>
<table width="90%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td width="100%" align="left">
<font class='font1'><em>Matrix:</em></font>
<a href='morphology.php'><font class="font7">Morphology</font> <font class="font7_A">|</font>
<a href='markers.php'><font class="font7"> Markers</font> </a> <font class="font7_A">|</font>
<font class="font7_B">Electrophysiology</font> <font class="font7_A">|</font>
<a href='connectivity.php'><font class="font7"> Connectivity</font></a>
</font>
</td>
</tr>
</table>
<?php
}
?>
</div>
-->
<!-- ------------------------ -->
<div class="table_position">
<table border="0" cellspacing="0" cellpadding="0" class="tabellauno">
<tr>
<td>
<table id="nGrid"></table>
<div id="pager"></div>
</td>
</tr>
</table>
<table width="100%" border="0" cellspacing="0" cellpadding="0" class='body_table'>
<tr>
<td>
<!-- **************** BODY **************** -->
<?php
if ($research){
$full_search_string = $_SESSION['full_search_string'];
if ($number_type == 1)
print ("<font class='font3'> $number_type Result [$full_search_string]</font>");
else
print ("<font class='font3'> $number_type Results [$full_search_string]</font>");
}
?>
<font class='font5'><strong>Legend:</strong> </font>
<font face="Verdana, Arial, Helvetica, sans-serif" color="#339900" size="2"> +/green: </font> <font face="Verdana, Arial, Helvetica, sans-serif" size="2"> Excitatory</font>
<font face="Verdana, Arial, Helvetica, sans-serif" color="#CC0000" size="2"> -/red: </font> <font face="Verdana, Arial, Helvetica, sans-serif" size="2"> Inhibitory</font>
<br />
<font face="Verdana, Arial, Helvetica, sans-serif" color="#FF0000" size="2">* indicates new v2.0 neuron type</font>
<br/>
<font class='font5'>Values are selected from the source with the greatest number of measurements taken at preferred experimental conditions (rats, patch clamp, & body temperature, when available).</font>
<br />
<font class='font5'>Hover over a value for standard deviation, experimental conditions, number of measurements, and number of sources.</font>
<br />
<font class='font5'>Pale versions of the colors in the matrix indicate interpretations of neuronal property information that have not yet been fully verified.</font>
</td>
</tr>
</table>
</div>
</body>
</html>