OMOP CDM Vocabularies

[AndyRae]

Below is a list of the current OMOP CDM Vocabularies deployed with carrot.ac.uk.

We try to meet the OHDSI Vocabulary team release cadence, roughly every 6 months or so.

If you would like another vocabulary not listed, but available on Athena, please leave a comment.

vocabulary_id	vocabulary_name	vocabulary_reference	vocabulary_version	vocabulary_concept_id
HCPCS	Healthcare Common Procedure Coding System (CMS)	http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html	20240101 Alpha Numeric HCPCS File	44819101
SOPT	Source of Payment Typology (PHDSC)	https://www.nahdo.org/sopt	SOPT Version 9.2	32473
Specimen Type	OMOP Specimen Type	OMOP generated	581376
Episode	OMOP Episode	OMOP generated	Episode 20201014	32523
ICD9Proc	International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 3 (NCHS)	http://www.cms.gov/Medicare/Coding/ICD9ProviderDiagnosticCodes/codes.html	ICD9CM v32 master descriptions	44819099
HES Specialty	Hospital Episode Statistics Specialty (NHS)	http://www.datadictionary.nhs.uk/data_dictionary/attributes/m/main_specialty_code_de.asp?shownav=0	2018-06-26 HES Specialty	44819145
Observation Type	OMOP Observation Type	OMOP generated	44819129
Procedure Type	OMOP Procedure Occurrence Type	OMOP generated	44819128
Meas Type	OMOP Measurement Type	OMOP generated	44819152
NDC	National Drug Code (FDA and manufacturers)	http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html, http://www.fda.gov/downloads/Drugs/DevelopmentApprovalProcess/UCM070838.zip	NDC 20240225	44819105
SPL	Structured Product Labeling (FDA)	http://www.fda.gov/Drugs/InformationOnDrugs/ucm142438.htm	NDC 20240225	44819140
Visit	OMOP Visit	OMOP generated	Visit 20211216	44819119
dm+d	Dictionary of Medicines and Devices (NHS)	https://isd.hscic.gov.uk/trud3/user/authenticated/group/0/pack/1/subpack/24/releases	DMD 2023-05-22	232
US Census	Census regions of the United States (USCB)	https://www.census.gov/geo/maps-data/data/tiger-cart-boundary.html	US Census 2017 Release	32570
ATC	WHO Anatomic Therapeutic Chemical Classification	http://www.whocc.no/atc_ddd_index/	RxNorm 20210907	44819117
UB04 Typ bill	UB04 Type of Bill - Institutional (USHIK)	https://ushik.ahrq.gov/ViewItemDetails?&system=apcd&itemKey=196987000	32044
Concept Class	OMOP Concept Class	OMOP generated	44819233
Condition Type	OMOP Condition Occurrence Type	OMOP generated	44819127
Obs Period Type	OMOP Observation Period Type	OMOP generated	44819149
Domain	OMOP Domain	OMOP generated	44819147
None	OMOP Standardized Vocabularies	OMOP generated	v5.0 29-FEB-24	44819096
Visit Type	OMOP Visit Type	OMOP generated	44819150
Currency	International Currency Symbol (ISO 4217)	http://www.iso.org/iso/home/standards/currency_codes.htm	2008	44819153
Condition Status	OMOP Condition Status	OMOP generated	32887
ICD9CM	International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)	http://www.cms.gov/Medicare/Coding/ICD9ProviderDiagnosticCodes/codes.html	ICD9CM v32 master descriptions	5046
Plan	OMOP Health Plan	OMOP generated	32471
OMOP Extension	OMOP Extension (OHDSI)	OMOP generated	OMOP Extension 20240228	32758
RxNorm	RxNorm (NLM)	http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html	RxNorm 20240102	44819104
PPI	AllOfUs_PPI (Columbia)	http://terminology.pmi-ops.org/CodeSystem/ppi	Codebook Version 0.4.43 + COVID + MHWB + SDOH + PFH + BHP + EHH	581404
Drug Type	OMOP Drug Exposure Type	OMOP generated	44819126
Ethnicity	OMOP Ethnicity	OMOP generated	44819134
UCUM	Unified Code for Units of Measure (Regenstrief Institute)	http://aurora.regenstrief.org/~ucum/ucum.html#section-Alphabetic-Index	Version 1.8.2	44819107
Cost Type	OMOP Cost Type	OMOP generated	5029
Metadata	OMOP Metadata	OMOP generated	32675
Medicare Specialty	Medicare provider/supplier specialty codes (CMS)	http://www.cms.gov/Medicare/Provider-Enrollment-and-Certification/MedicareProviderSupEnroll/Taxonomy.html	2018-06-26 Specialty	44819138
Relationship	OMOP Relationship	OMOP generated	44819235
Race	Race and Ethnicity Code Set (USBC)	http://www.cdc.gov/nchs/data/dvs/Race_Ethnicity_CodeSet.pdf	Version 1.0	44819109
Device Type	OMOP Device Type	OMOP generated	44819151
Sponsor	OMOP Sponsor	OMOP generated	32472
RxNorm Extension	OMOP RxNorm Extension	OMOP generated	RxNorm Extension 2024-01-25	252
CO-CONNECT TWINS	CO-CONNECT TWINS (University of Nottingham)	https://co-connect.ac.uk/	CO-CONNECT TWINS 2023-05-31	33093
ICD10	International Classification of Diseases, Tenth Revision (WHO)	http://www.who.int/classifications/icd/icdonlineversions/en/	2021 Release	44819124
UB04 Point of Origin	UB04 Claim Source Inpatient Admission Code (CMS)	https://www.resdac.org/cms-data/variables/Claim-Source-Inpatient-Admission-Code	32045
CMS Place of Service	Place of Service Codes for Professional Claims (CMS)	http://www.cms.gov/Medicare/Medicare-Fee-for-Service-Payment/PhysicianFeeSched/downloads//Website_POS_database.pdf	11/01/2009	44819110
ABMS	Provider Specialty (American Board of Medical Specialties)	http://www.abms.org/member-boards/specialty-subspecialty-certificates	2018-06-26 ABMS	45756746
Plan Stop Reason	OMOP Plan Stop Reason	OMOP generated	32474
Korean Revenue Code	Korean Revenue Code (KNHIS)	OMOP generated	32724
SNOMED	Systematic Nomenclature of Medicine - Clinical Terms (IHTSDO)	http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html	2023-07-31 SNOMED CT International Edition; 2023-09-01 SNOMED CT US Edition; 2023-09-27 SNOMED CT UK Edition	44819097
Gender	OMOP Gender	OMOP generated	44819108
CPT4	Current Procedural Terminology version 4 (AMA)	http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html	2023 Release	44819100
CO-CONNECT	CO-CONNECT (University of Nottingham)	https://co-connect.ac.uk/	CO-CONNECT 2023-05-31	33091
CO-CONNECT MIABIS	CO-CONNECT MIABIS (University of Nottingham)	https://co-connect.ac.uk/	CO-CONNECT MIABIS 2023-05-31	33092
Note Type	OMOP Note Type	OMOP generated	44819146
Cohort Type	OMOP Cohort Type	OMOP generated	44819234
NAACCR	Data Standards & Data Dictionary Volume II (NAACCR)	http://datadictionary.naaccr.org/?c=10	NAACCR v18	32642
Read	NHS UK Read Codes Version 2 (HSCIC)	http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html	NHS READV2 21.0.0 20160401000001 + DATAMIGRATION_25.0.0_20180403000001	44819113
Death Type	OMOP Death Type	OMOP generated	44819135
CDM	OMOP Common DataModel	https://github.com/OHDSI/CommonDataModel	CDM v6.0.0	32485
OSM	OpenStreetMap (OSMF)	https://www.openstreetmap.org/copyright/en, https://wambachers-osm.website/boundaries/	OSM Release 2019-02-21	32541
OPCS4	OPCS Classification of Interventions and Procedures version 4 (NHS)	http://systems.hscic.gov.uk/data/clinicalcoding/codingstandards/opcs4	2021 Release	44819143
NUCC	National Uniform Claim Committee Health Care Provider Taxonomy Code Set (NUCC)	http://www.nucc.org/index.php?option=com_content&view=article&id=107&Itemid=132	2018-06-26 NUCC	44819137
ICD10PCS	ICD-10 Procedure Coding System (CMS)	http://www.cms.gov/Medicare/Coding/ICD10/index.html	ICD10PCS 2024	44819125
OMOP Genomic	OMOP Genomic vocabulary of known variants involved in disease	OMOP generated	OMOP Genomic 20240216	33002
Revenue Code	UB04/CMS1450 Revenue Codes (CMS)	http://www.mpca.net/?page=ERC_finance	2010 Release	44819133
Cost	OMOP Cost	OMOP generated	581457
UB04 Pt dis status	UB04 Patient Discharge Status Code (CMS)	https://www.resdac.org/cms-data/variables/patient-discharge-status-code	32047
UB04 Pri Typ of Adm	UB04 Claim Inpatient Admission Type Code (CMS)	https://www.resdac.org/cms-data/variables/Claim-Inpatient-Admission-Type-Code	32046
Vocabulary	OMOP Vocabulary	OMOP generated	44819232
Type Concept	OMOP Type Concept	OMOP generated	Type Concept 20221030	32808
ICD10CM	International Classification of Diseases, Tenth Revision, Clinical Modification (NCHS)	https://www.cdc.gov/nchs/icd/icd-10-cm.htm	ICD10CM FY2024 code descriptions	44819098
Language	OMOP Language	OMOP generated	Language 20221030	33069
UK Biobank	UK Biobank (UK Biobank)	https://biobank.ctsu.ox.ac.uk/showcase/schema.cgi; https://biobank.ctsu.ox.ac.uk/crystal/refer.cgi?id=141140	version 2021-03-18	32976
LOINC	Logical Observation Identifiers Names and Codes (Regenstrief Institute)	http://loinc.org/downloads/loinc	LOINC 2.76	44819102