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environment.yml
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environment.yml
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name: DeepInverton
channels:
- pytorch
- anaconda
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- appdirs=1.4.4=pyhd3eb1b0_0
- bedtools=2.30.0=h7d7f7ad_2
- biopython=1.78=py39h7f8727e_0
- blas=1.0=mkl
- bottleneck=1.3.5=py39h7deecbd_0
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.05.30=h06a4308_0
- certifi=2023.7.22=py39h06a4308_0
- cffi=1.15.1=py39h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cpuonly=2.0=0
- cryptography=41.0.2=py39h774aba0_0
- emboss=6.6.0=h6debe1e_0
- expat=2.4.9=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.14.1=h4c34cd2_2
- freetype=2.12.1=h4a9f257_0
- giflib=5.2.1=h5eee18b_3
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- icu=58.2=he6710b0_3
- idna=3.4=py39h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- joblib=1.2.0=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libdeflate=1.17=h5eee18b_0
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgd=2.3.3=h6a678d5_2
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.0=h6a678d5_2
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libuv=1.44.2=h5eee18b_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxml2=2.10.3=hcbfbd50_0
- lz4-c=1.9.4=h6a678d5_0
- mkl=2023.1.0=h6d00ec8_46342
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.6=py39h417a72b_1
- mkl_random=1.2.2=py39h417a72b_1
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- numexpr=2.8.4=py39hc78ab66_1
- numpy=1.23.5=py39hf6e8229_1
- numpy-base=1.23.5=py39h060ed82_1
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1u=h7f8727e_0
- packaging=23.0=py39h06a4308_0
- pandas=1.5.2=py39h417a72b_0
- pillow=9.4.0=py39h6a678d5_0
- pip=23.1.2=py39h06a4308_0
- pooch=1.4.0=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=23.2.0=py39h06a4308_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.16=h7a1cb2a_2
- python-dateutil=2.8.2=pyhd3eb1b0_0
- pytorch=1.11.0=py3.9_cpu_0
- pytorch-mutex=1.0=cpu
- pytz=2022.7=py39h06a4308_0
- readline=8.2=h5eee18b_0
- requests=2.31.0=py39h06a4308_0
- scikit-learn=1.1.2=py39h6a678d5_0
- scipy=1.10.1=py39hf6e8229_1
- setuptools=67.8.0=py39h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.41.2=h5eee18b_0
- tbb=2021.8.0=hdb19cb5_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=0.11.0=py39_cpu
- torchvision=0.12.0=py39_cpu
- typing_extensions=4.7.1=py39h06a4308_0
- tzdata=2023c=h04d1e81_0
- urllib3=1.26.16=py39h06a4308_0
- wheel=0.38.4=py39h06a4308_0
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
prefix: /home/wenjiejie/miniconda3/envs/DeepInverton