This document showcase of Clair3's representation unification in three platforms. All visualization cases are from the chr1 of the GIAB HG002 sample.
For your interest, please also check the following links:
- How this algorithm works: represatation unification.
- For more visualization cases, please click ONT, PacBio HiFi, Illumina.
Each figure contains three tracks includng 1) truths variants information from a GIAB truth set VCF, 2) phased alignments, and 3) details of the unification result (how candidate haplotypes match with the truth haplotypes). Below is an example.
HG002 chr1:1057428-1057485
HG002 chr1:16034397-16034446
HG002 chr1:63493040-63493107
HG002 chr1:80929164-80929268
HG002 chr1:104905825-104905932
HG002 chr1:177645243-177645283
HG002 chr1:17126445_171264950
HG002 chr1:166255391-166255451
HG002 chr1:16034409-16034448
HG002 chr1:116120386-116120580
HG002 chr1:236541577-236541610
HG002 chr1:236937922-236937969
HG002 chr1:235255208-235255298
HG002 chr1:210982210-210982283
