diff --git a/README.md b/README.md index 25ad912..8b0036c 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ # funtooNorm - +[![Build Status](https://travis-ci.org/GreenwoodLab/funtooNorm.svg?branch=master)](https://travis-ci.org/GreenwoodLab/funtooNorm) The R package ```funtooNorm``` provides a function for normalization of Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K) data when there are samples from multiple tissues or cell types. diff --git a/man/agreement.Rd b/man/agreement.Rd index d2bab0c..5478d8d 100644 --- a/man/agreement.Rd +++ b/man/agreement.Rd @@ -41,7 +41,7 @@ funtoonormout <- funtoonorm(sigA=sigAsample, sigB=sigBsample, Annot=Annot, controlred=matred, controlgrn=matgrn, cp.types=NULL, cell_type = cell_type, - logged.data=FALSE, save.quant=TRUE, ncmp=ncmp, apply.fits=TRUE, + logged2.data=FALSE, save.quant=TRUE, ncmp=ncmp, apply.fits=TRUE, validate=FALSE) #To calculate measures of agreement before and after normalization