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Gravitate Health Preprocessing service manual

License

Table of contents

Introduction

This repository contains a preprocesing service which returns manually preprocessed ePIs from ePI and ips HL7 Gravitate Health repositories.

Kubernetes Deployment

  1. Edit the kubernetes-yaml/002_preprocessing-service-manual-deployment.yaml file and change the URL environment variable to point to the base URL where FHIR Server is hosted. For example:
env:
  - name: URL
    value: "https://fosps.gravitatehealth.eu/"
  1. Create the following resources:
kubectl apply -f kubernetes-yaml/001_preprocessing-service-manual-service.yaml
kubectl apply -f kubernetes-yaml/002_preprocessing-service-manual-deployment.yaml

In order to be discovered by the focusing manager, the service.yaml needs to include the following selector in the spec field:

metadata:
  labels:
    eu.gravitate-health.fosps.preprocessing: "true"

NOTE: This service does not need to be published to the internet, so no gateway config is needed to proxy any petition. This is an internal service.

Usage

Service will be accessible internally from the kubernetes cluster with the url http://preprocessing-service-manual.default.svc.cluster.local:3000/preprocess

Known issues and limitations

Getting help

Contributing

License

This project is distributed under the terms of the Apache License, Version 2.0 (AL2). The license applies to this file and other files in the GitHub repository hosting this file.

Copyright 2022 Universidad Politécnica de Madrid

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

Authors and history

  • Guillermo Mejías (@gmej)

Acknowledgments