build-test-linux.yml

name: CI on LINUX

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

jobs:
  build-linux:
    runs-on: "ubuntu-latest"
    strategy:
      matrix:
        python-version: ['3.11']

    steps:
      - name: Checkout repo
        uses: actions/checkout@v2

      - name: Install System Dependencies
        run: |
          sudo apt-get update
          sudo apt-get install graphviz graphviz-dev

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: ./installation/sira_env.yml
          environment-name: sira_env
          create-args: >-
            python=${{ matrix.python-version }}
            libtiff
            libpng
          cache-environment: true

      - name: Install uv and requirements
        shell: bash -l {0}
        run: |
          micromamba activate sira_env
          pip install uv
          uv pip install -r ./installation/sira_req.txt

      - name: Run pytest
        shell: bash -l {0}
        run: |
          micromamba activate sira_env
          pytest

      - name: Upload Coverage to codecov
        uses: codecov/codecov-action@v2