From ce80a097b72c6d409e5df1765c1152ae536a8dea Mon Sep 17 00:00:00 2001 From: MarvinDo Date: Wed, 10 Jan 2024 10:37:58 +0100 Subject: [PATCH] fixed a path --- src/common/paths.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/common/paths.py b/src/common/paths.py index 9c8627ad..54f36d9c 100644 --- a/src/common/paths.py +++ b/src/common/paths.py @@ -223,7 +223,7 @@ def joinpaths(path, *paths): #tools - vep_path = joinpaths(toolsdir, "ensembl-vep-release-107.0") + vep_path = joinpaths(toolsdir, "ensembl-vep") vep_cache_dir = joinpaths(vep_path, "data/cache") os.environ['PERL5LIB'] = vep_path + "/Bio/:" + vep_path + "/cpan/lib/perl5/:" + os.environ.get('PERL5LIB', '') #ngs_bits_path = "/mnt/storage1/share/opt/ngs-bits-hg38-2022_04-70-g53bce65c/"