From 4775040e7be94b52a64a932970ce1a3030cf024a Mon Sep 17 00:00:00 2001 From: Sam Leeflang Date: Mon, 8 Jul 2024 10:40:47 +0200 Subject: [PATCH] Update modified --- app/data/opends/annotation-termlist.csv | 1 + app/data/opends/create-update-tombstone-event-termlist.csv | 4 ++-- app/data/opends/data-mapping-termlist.csv | 3 ++- app/data/opends/digital-media-termlist.csv | 5 ++--- app/data/opends/digital-specimen-termlist.csv | 4 ++-- app/data/opends/machine-annotation-service-termlist.csv | 3 ++- app/data/opends/opends-namespaces.csv | 1 - app/data/opends/source-system-termlist.csv | 3 ++- app/md/annotation/termlist-header.md | 1 - app/md/create-update-tombstone-event/termlist-header.md | 4 ++-- app/md/data-mapping/termlist-header.md | 1 + app/md/digital-media/termlist-header.md | 1 + app/md/digital-specimen/termlist-header.md | 2 ++ app/md/machine-annotation-service/termlist-header.md | 1 + app/md/source-system/termlist-header.md | 1 + .../resources/diagrams/class-diagrams/annotation-full.html | 1 + .../resources/diagrams/class-diagrams/data-mapping-full.html | 1 + .../diagrams/class-diagrams/digital-media-full.html | 3 +-- .../diagrams/class-diagrams/digital-specimen-full.html | 2 +- .../class-diagrams/machine-annotation-service-full.html | 1 + .../diagrams/class-diagrams/source-system-full.html | 1 + 21 files changed, 27 insertions(+), 17 deletions(-) diff --git a/app/data/opends/annotation-termlist.csv b/app/data/opends/annotation-termlist.csv index 7058a36..adfb937 100644 --- a/app/data/opends/annotation-termlist.csv +++ b/app/data/opends/annotation-termlist.csv @@ -17,6 +17,7 @@ dcterms:,references,References,Indicates how the value came to be. https://purl. ods:,score,Score,A score between 0 and 1 indicating the confidence in the value. 1 is the highest confidence and 0 is the lowest.,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,hasBody,False,False,oa:hasBody.score,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/score,ods:score,number dcterms:,creator,Creator,Contains an ods:Agent object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Annotation,True,False,Annotation.creator,http://purl.org/dc/terms/,http://purl.org/dc/terms/creator,dcterms:creator,object dcterms:,created,Created,The date and time when the annotation was created. https://purl.org/dc/terms/created,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Annotation,True,False,Annotation.created,http://purl.org/dc/terms/,http://purl.org/dc/terms/created,dcterms:created,string +dcterms:,modified,Modified,"The date and time when the annotation was last modified, generating a new version. https://purl.org/dc/terms/modified",,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Annotation,True,False,Annotation.modified,http://purl.org/dc/terms/,http://purl.org/dc/terms/modified,dcterms:modified,string dcterms:,issued,Issued,The date and time when the annotation was generated. https://purl.org/dc/terms/issued,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Annotation,True,False,Annotation.issued,http://purl.org/dc/terms/,http://purl.org/dc/terms/issued,dcterms:issued,string as:,generator,Generator,Object containing information on who generated the object. Generated is here seen as who stored/indexed the object. In most case this will be the annotation-processing-service. Contains an ods:Agent object.,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Annotation,True,False,Annotation.generator,http://www.w3.org/ns/activitystreams#,http://www.w3.org/ns/activitystreams#generator,as:generator,object schema:,AggregateRating,Aggregate Rating,The average rating based on multiple ratings or reviews,,,,http://www.w3.org/2000/01/rdf-schema#Class,Annotation,False,False,Annotation.AggregateRating,http://schema.org/,http://schema.org/AggregateRating,schema:AggregateRating,object diff --git a/app/data/opends/create-update-tombstone-event-termlist.csv b/app/data/opends/create-update-tombstone-event-termlist.csv index eee2077..c9b682a 100644 --- a/app/data/opends/create-update-tombstone-event-termlist.csv +++ b/app/data/opends/create-update-tombstone-event-termlist.csv @@ -4,12 +4,12 @@ ods:,ID,Id,"The unique identifier of the Create Update Tombstone Event, this inc ods:,type,Type,The DOI to the FDO type of the object,,,['https://doi.org/10.15468/1a2b3c'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,CreateUpdateTombstoneEvent,False,False,CreateUpdateTombstoneEvent.type,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/type,ods:type,string prov:,Activity,Activity,"Based on the prov-ontology Activity Class, https://www.w3.org/ns/prov#Activity",,,,http://www.w3.org/2000/01/rdf-schema#Class,CreateUpdateTombstoneEvent,False,False,CreateUpdateTombstoneEvent.Activity,,Activity,prov:Activity,object prov:,wasAssociatedWith,Was Associated With,Contains zero a reference to one or more prov:Agent objects that were associated with the Activity,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,True,False,prov:Activity.wasAssociatedWith,,wasAssociatedWith,prov:wasAssociatedWith,array -prov:,endedAtTime,Ended At Time,"The date and time when the activity ended, in ISO 8601 format, http://www.w3.org/ns/prov#endedAtTime",,,['2024-06-11T09:14:001Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,True,False,prov:Activity.endedAtTime,,endedAtTime,prov:endedAtTime,string +prov:,endedAtTime,Ended At Time,"The date and time when the activity ended, in ISO 8601 format, http://www.w3.org/ns/prov#endedAtTime",,,['2024-06-11T09:14:00.233Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,True,False,prov:Activity.endedAtTime,,endedAtTime,prov:endedAtTime,string prov:,used,Used,"The unique identifier of the prov:Entity that was used in the Activity (as indicated at @id in the Activity Class), http://www.w3.org/ns/prov#used",,,"['https://hdl.handle.net/20.5000.1025/XXX-XXX-XXX/1', 'https://doi.org/10.15468/1a2b3c/3']",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,True,False,prov:Activity.used,,used,prov:used,string rdfs:,comment,Comment,"A comment about the activity, https://www.w3.org/2000/01/rdf-schema#comment",,,['This activity was created by the user'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,False,False,prov:Activity.comment,http://www.w3.org/2000/01/rdf-schema#,http://www.w3.org/2000/01/rdf-schema#comment,rdfs:comment,string ods:,changeValue,Change Value,"The json patch object that describes the changes made to the object as opposed to the previous version, empty if this is a ods:Create or ods:Tombstone activity",,,"[[{'op': 'add', 'path': '/ods:attributes/dwc:collectionId', 'value': 'Herbarium Berolinense'}, {'op': 'copy', 'path': '/ods:attributes/dwc:identification/0/taxonIdentifications/0/dwc:infragenericEpithet', 'from': '/ods:attributes/dwc:identification/0/taxonIdentifications/0/dwc:specificEpithet'}]]",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Activity,False,False,prov:Activity.changeValue,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/changeValue,ods:changeValue,array prov:,Entity,Entity,"Based on the prov-ontology Entity Class, https://www.w3.org/ns/prov#Entity",,,,http://www.w3.org/2000/01/rdf-schema#Class,CreateUpdateTombstoneEvent,False,False,CreateUpdateTombstoneEvent.Entity,,Entity,prov:Entity,object -prov:,value,Value,"The full object that is the result of the prov:Activity, the structure of this object is defined by the `@type` field. When the `prov:Activity` is of type `ods:Tombstone`, this field is empty",,,"[{'@id': 'https://hdl.handle.net/20.5000.1025/ABC-DEF-GHI', '@type': 'ods:Mapping', 'ods:ID': 'https://hdl.handle.net/20.5000.1025/ABC-DEF-GHI', 'ods:type': 'https://doi.org/10.15468/1a2b3c', 'schema:version': 1, 'schema:name': 'Default Mapping for Herbarium of University of Coimbra (COI)', 'schema:description': 'The default mapping for the Herbarium of the University of Coimbra (COI) to the Darwin Core standard.', 'schema:dateCreated': '2021-06-01T12:00:00Z', 'ods:creator': 'e2befba6-9324-4bb4-9f41-d7dfae4a44b0', 'ods:Mapping': {'ods:DefaultMapping': [{'ods:physicalSpecimenIdType': 'cetaf'}, {'ods:type': 'ZoologyVertebrateSpecimen'}, {'ods:organisationId': 'https://ror.org/05xg72x27'}], 'ods:FieldMapping': [{'ods:physicalSpecimenId': 'dwc:catalogNumber'}]}, 'ods:mappingDataStandard': 'dwc'}]",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Entity,False,False,prov:Entity.value,,value,prov:value,object +prov:,value,Value,"The full object that is the result of the prov:Activity, the structure of this object is defined by the `@type` field. When the `prov:Activity` is of type `ods:Tombstone`, this field is empty",,,"[{'@id': 'https://hdl.handle.net/20.5000.1025/ABC-DEF-GHI', '@type': 'ods:Mapping', 'ods:ID': 'https://hdl.handle.net/20.5000.1025/ABC-DEF-GHI', 'ods:type': 'https://doi.org/10.15468/1a2b3c', 'schema:version': 1, 'schema:name': 'Default Mapping for Herbarium of University of Coimbra (COI)', 'schema:description': 'The default mapping for the Herbarium of the University of Coimbra (COI) to the Darwin Core standard.', 'schema:dateCreated': '2021-06-01T12:00:00.111Z', 'ods:creator': 'e2befba6-9324-4bb4-9f41-d7dfae4a44b0', 'ods:Mapping': {'ods:DefaultMapping': [{'ods:physicalSpecimenIdType': 'cetaf'}, {'ods:type': 'ZoologyVertebrateSpecimen'}, {'ods:organisationId': 'https://ror.org/05xg72x27'}], 'ods:FieldMapping': [{'ods:physicalSpecimenId': 'dwc:catalogNumber'}]}, 'ods:mappingDataStandard': 'dwc'}]",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Entity,False,False,prov:Entity.value,,value,prov:value,object prov:,wasRevisionOf,Was Revision Of,"The unique identifier (handle) of the previous version of the object, only present when prov:Activity is of type ods:Update and ods:Tombstone",,,['https://hdl.handle.net/20.5000.1025/XXX-XXX-XXX/1'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Entity,False,False,prov:Entity.wasRevisionOf,,wasRevisionOf,prov:wasRevisionOf,string prov:,wasGeneratedBy,Was Generated By,"The unique identifier of the prov:Activity that generated the Entity (as indicated at @id in the Activity Class), http://www.w3.org/ns/prov#wasGeneratedBy",,,"['7ba628d4-2e28-4ce4-ad1e-e99c97c20507', '807f145c-11a1-41f0-af34-b2d7c580bcc1']",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Entity,True,False,prov:Entity.wasGeneratedBy,,wasGeneratedBy,prov:wasGeneratedBy,string ods:,hasProvAgent,Has Prov Agent,Contains zero or more prov:Agent objects,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,CreateUpdateTombstoneEvent,False,False,CreateUpdateTombstoneEvent.hasProvAgent,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/hasProvAgent,ods:hasProvAgent,array diff --git a/app/data/opends/data-mapping-termlist.csv b/app/data/opends/data-mapping-termlist.csv index c828098..9cd9e01 100644 --- a/app/data/opends/data-mapping-termlist.csv +++ b/app/data/opends/data-mapping-termlist.csv @@ -6,7 +6,8 @@ ods:,status,Status,The status of the Digital Object,,,,http://www.w3.org/1999/02 schema:,version,Version,"Version of the Mapping, https://schema.org/version",,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.version,http://schema.org/,http://schema.org/version,schema:version,integer schema:,name,Name,"Name of the Mapping as provided by the user, https://schema.org/name",,,['Default Mapping for Herbarium of University of Coimbra (COI)'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.name,http://schema.org/,http://schema.org/name,schema:name,string schema:,description,Description,"Description of the Mapping as provided by the user, https://schema.org/description",,,['The default mapping for the Herbarium of the University of Coimbra (COI) to the Darwin Core standard.'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,False,False,Mapping.description,http://schema.org/,http://schema.org/description,schema:description,string -schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:000Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:00.445Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateModified,Date Modified,"Timestamp of last modification. Internally generated, https://schema.org/dateModified",,,['2021-06-06T13:22:00.445Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.dateModified,http://schema.org/,http://schema.org/dateModified,schema:dateModified,string schema:,creator,Creator,Contains an ods:Agent object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,True,False,Mapping.creator,http://schema.org/,http://schema.org/creator,schema:creator,object ods:,DefaultMapping,Default Mapping,"A mapping object setting default values for ods terms. These default mappings will be set for each record in the dataset. Key is the ods term, value the default value to use",,,"[[{'ods:physicalSpecimenIdType': 'cetaf'}, {'ods:type': 'ZoologyVertebrateSpecimen'}, {'ods:organisationId': 'https://ror.org/05xg72x27'}]]",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,False,False,Mapping.DefaultMapping,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/DefaultMapping,ods:DefaultMapping,array ods:,FieldMapping,Field Mapping,"Setting an explicit mapping for an ods term to a term from the incoming dataset. Key is the ods term, value the incoming data standard term",,,[[{'ods:physicalSpecimenId': 'dwc:catalogNumber'}]],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,Mapping,False,False,Mapping.FieldMapping,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/FieldMapping,ods:FieldMapping,array diff --git a/app/data/opends/digital-media-termlist.csv b/app/data/opends/digital-media-termlist.csv index 98ae8b5..a8ce1d6 100644 --- a/app/data/opends/digital-media-termlist.csv +++ b/app/data/opends/digital-media-termlist.csv @@ -3,7 +3,8 @@ ods:,DigitalMedia,Digital Media,A digital representation of an media object such ods:,ID,Id,The unique digital identifier of the object,,,['https://hdl.handle.net.org/20.5000.1025/XXX-XXX-XXX'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.ID,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/ID,ods:ID,string ods:,version,Version,"The version of the object, each change generates a new version",,,[1],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.version,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/version,ods:version,integer ods:,status,Status,The status of the Digital Object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.status,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/status,ods:status, -ods:,created,Created,The timestamp that the object version was created in DiSSCo,,,[],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.created,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/created,ods:created,string +dcterms:,modified,Modified,"The timestamp that the object was last changed, which resulted in a new version of the object",,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.modified,http://purl.org/dc/terms/,http://purl.org/dc/terms/modified,dcterms:modified,string +dcterms:,created,Created,The timestamp that the object was created in DiSSCo,,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.created,http://purl.org/dc/terms/,http://purl.org/dc/terms/created,dcterms:created,string ods:,type,Type,The DOI to the FDO type of the object,,,['https://doi.org/10.15468/1a2b3c'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.type,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/type,ods:type,string dcterms:,type,Type,https://purl.org/dc/terms/type,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.type,http://purl.org/dc/terms/,http://purl.org/dc/terms/type,dcterms:type, ac:,accessURI,Access Uri,https://rs.tdwg.org/ac/terms/accessURI,,,[],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,True,False,DigitalMedia.accessURI,http://rs.tdwg.org/ac/terms/,http://rs.tdwg.org/ac/terms/accessURI,ac:accessURI,string @@ -18,8 +19,6 @@ dcterms:,accessRights,Access Rights,https://purl.org/dc/terms/accessRights,,,,ht dcterms:,rightsHolder,Rights Holder,https://purl.org/dc/terms/rightsHolder,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.rightsHolder,http://purl.org/dc/terms/,http://purl.org/dc/terms/rightsHolder,dcterms:rightsHolder,string dcterms:,source,Source,https://purl.org/dc/terms/source,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.source,http://purl.org/dc/terms/,http://purl.org/dc/terms/source,dcterms:source,string dcterms:,creator,Creator,https://purl.org/dc/elements/1.1/creator,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.creator,http://purl.org/dc/terms/,http://purl.org/dc/terms/creator,dcterms:creator,string -dcterms:,created,Created,https://purl.org/dc/terms/created,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.created,http://purl.org/dc/terms/,http://purl.org/dc/terms/created,dcterms:created,string -dcterms:,modified,Modified,https://purl.org/dc/terms/modified,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.modified,http://purl.org/dc/terms/,http://purl.org/dc/terms/modified,dcterms:modified,string ods:,hasAssertion,Has Assertion,Contains zero or more ods:Assertion objects,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.hasAssertion,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/hasAssertion,ods:hasAssertion,array ods:,hasCitation,Has Citation,Contains zero or more ods:Citation objects,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.hasCitation,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/hasCitation,ods:hasCitation,array ods:,hasIdentifier,Has Identifier,Contains zero or more ods:Identifier objects,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalMedia,False,False,DigitalMedia.hasIdentifier,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/hasIdentifier,ods:hasIdentifier,array diff --git a/app/data/opends/digital-specimen-termlist.csv b/app/data/opends/digital-specimen-termlist.csv index f9e38c6..f00901b 100644 --- a/app/data/opends/digital-specimen-termlist.csv +++ b/app/data/opends/digital-specimen-termlist.csv @@ -3,7 +3,8 @@ ods:,DigitalSpecimen,Digital Specimen,A digital representation of a physical spe ods:,ID,Id,The unique identifier of the object,,,['https://doi.org/10.22/XXX-XXX-XXX'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.ID,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/ID,ods:ID,string ods:,version,Version,"The version of the object, each change generates a new version",,,[1],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.version,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/version,ods:version,integer ods:,status,Status,The status of the Digital Object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.status,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/status,ods:status, -ods:,created,Created,The timestamp that the object version was created in DiSSCo,,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.created,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/created,ods:created,string +dcterms:,modified,Modified,"The timestamp that the object was last changed, which resulted in a new version of the object",,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.modified,http://purl.org/dc/terms/,http://purl.org/dc/terms/modified,dcterms:modified,string +dcterms:,created,Created,The timestamp that the object was created in DiSSCo,,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.created,http://purl.org/dc/terms/,http://purl.org/dc/terms/created,dcterms:created,string ods:,type,Type,The DOI to the FDO type of the object,,,['https://doi.org/10.15468/1a2b3c'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.type,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/type,ods:type,string ods:,midsLevel,Mids Level,"The MIDS level of the object, see https://www.tdwg.org/community/cd/mids/",,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.midsLevel,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/midsLevel,ods:midsLevel,integer ods:,normalisedPhysicalSpecimenID,Normalised Physical Specimen Id,The physical specimen identifier of the object. When locally unique this is a combination between source-system-id and the local identifier,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,True,False,DigitalSpecimen.normalisedPhysicalSpecimenID,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/normalisedPhysicalSpecimenID,ods:normalisedPhysicalSpecimenID,string @@ -19,7 +20,6 @@ ods:,sourceSystemID,Source System Id,The handle to the source system object whic ods:,livingOrPreserved,Living Or Preserved,Whether the specimen is living or preserved,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.livingOrPreserved,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/livingOrPreserved,ods:livingOrPreserved, ods:,language,Language,"The language of the Digital Specimen metadata. Only indicate, not enforced. Recommended to use ISO 639-1 codes",,,"[['en', 'fr', 'de']]",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.language,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/language,ods:language,array dcterms:,license,License,https://purl.org/dc/terms/license,,,['https://creativecommons.org/licenses/by/4.0/'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.license,http://purl.org/dc/terms/,http://purl.org/dc/terms/license,dcterms:license,string -dcterms:,modified,Modified,https://purl.org/dc/terms/modified,,,['2023-10-02T12:31:34.806Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.modified,http://purl.org/dc/terms/,http://purl.org/dc/terms/modified,dcterms:modified,string dwc:,basisOfRecord,Basis Of Record,https://rs.tdwg.org/dwc/terms/basisOfRecord,,,['PreservedSpecimen'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.basisOfRecord,http://rs.tdwg.org/dwc/terms/,http://rs.tdwg.org/dwc/terms/basisOfRecord,dwc:basisOfRecord,string dwc:,preparations,Preparations,https://rs.tdwg.org/dwc/terms/preparations,,,['fossil'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.preparations,http://rs.tdwg.org/dwc/terms/,http://rs.tdwg.org/dwc/terms/preparations,dwc:preparations,string dwc:,disposition,Disposition,https://rs.tdwg.org/dwc/terms/disposition,,,['in collection'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,DigitalSpecimen,False,False,DigitalSpecimen.disposition,http://rs.tdwg.org/dwc/terms/,http://rs.tdwg.org/dwc/terms/disposition,dwc:disposition,string diff --git a/app/data/opends/machine-annotation-service-termlist.csv b/app/data/opends/machine-annotation-service-termlist.csv index b527be9..7f53275 100644 --- a/app/data/opends/machine-annotation-service-termlist.csv +++ b/app/data/opends/machine-annotation-service-termlist.csv @@ -6,7 +6,8 @@ ods:,status,Status,The status of the Digital Object,,,,http://www.w3.org/1999/02 schema:,version,Version,"Version of the Machine Annotation Service, https://schema.org/version",,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,False,False,MachineAnnotationService.version,http://schema.org/,http://schema.org/version,schema:version,integer schema:,name,Name,"Name of the Machine Annotation Service as provided by the user, https://schema.org/name",,,['GBIF Linker Service'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,True,False,MachineAnnotationService.name,http://schema.org/,http://schema.org/name,schema:name,string schema:,description,Description,"Description of the Machine Annotation Service as provided by the user, https://schema.org/description",,,['A service that links GBIF records to a DiSSCo Digital Specimen. It creates an EntityRelationship indicating the relationship'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,False,False,MachineAnnotationService.description,http://schema.org/,http://schema.org/description,schema:description,string -schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:000Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,False,False,MachineAnnotationService.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:000Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,True,False,MachineAnnotationService.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateModified,Date Modified,"Timestamp of last modification. Internally generated, https://schema.org/dateModified",,,['2021-06-06T13:22:00.445Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,True,False,MachineAnnotationService.dateModified,http://schema.org/,http://schema.org/dateModified,schema:dateModified,string schema:,creator,Creator,Contains an ods:Agent object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,False,False,MachineAnnotationService.creator,http://schema.org/,http://schema.org/creator,schema:creator,object ods:,containerImage,Container Image,URI of the image of the containerized application,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,True,False,MachineAnnotationService.containerImage,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/containerImage,ods:containerImage,string ods:,containerTag,Container Tag,Tag of the image,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,MachineAnnotationService,True,False,MachineAnnotationService.containerTag,http://rs.dissco.eu/opends/terms/,http://rs.dissco.eu/opends/terms/containerTag,ods:containerTag,string diff --git a/app/data/opends/opends-namespaces.csv b/app/data/opends/opends-namespaces.csv index e5a2026..1196882 100644 --- a/app/data/opends/opends-namespaces.csv +++ b/app/data/opends/opends-namespaces.csv @@ -7,7 +7,6 @@ dcterms:,http://purl.org/dc/terms/ dwc:,http://rs.tdwg.org/dwc/terms/ skos:,http://www.w3.org/2004/02/skos/core# tdwgutility:,http://rs.tdwg.org/dwc/terms/attributes/ -foaf:,http://xmlns.com/foaf/0.1/ dwciri:,http://rs.tdwg.org/dwc/iri/ schema:,https://schema.org/ chrono:,http://rs.tdwg.org/chrono/terms/ diff --git a/app/data/opends/source-system-termlist.csv b/app/data/opends/source-system-termlist.csv index 64547a6..8e798d1 100644 --- a/app/data/opends/source-system-termlist.csv +++ b/app/data/opends/source-system-termlist.csv @@ -6,7 +6,8 @@ ods:,status,Status,The status of the Digital Object,,,,http://www.w3.org/1999/02 schema:,version,Version,"Version of the Source System, https://schema.org/version",,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.version,http://schema.org/,http://schema.org/version,schema:version,integer schema:,name,Name,"Name of the Source System as provided by the user, https://schema.org/name",,,['Herbarium of University of Coimbra (COI)'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.name,http://schema.org/,http://schema.org/name,schema:name,string schema:,description,Description,"Description of the Source System as provided by the user, https://schema.org/description",,,"['The herbarium collection of the University of Coimbra is one of the oldest in Portugal, with specimens dating back to the 18th century.']",http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,False,False,SourceSystem.description,http://schema.org/,http://schema.org/description,schema:description,string -schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:000Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateCreated,Date Created,"Timestamp of creation. Internally generated, https://schema.org/dateCreated",,,['2021-06-01T12:00:00.323Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.dateCreated,http://schema.org/,http://schema.org/dateCreated,schema:dateCreated,string +schema:,dateModified,Date Modified,"Timestamp of last modification. Internally generated, https://schema.org/dateModified",,,['2021-06-06T13:22:00.445Z'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.dateModified,http://schema.org/,http://schema.org/dateModified,schema:dateModified,string schema:,creator,Creator,Contains an ods:Agent object,,,,http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,True,False,SourceSystem.creator,http://schema.org/,http://schema.org/creator,schema:creator,object schema:,url,Url,Endpoint from which data may be retrieved,,,['http://ipt.gbif.pt/ipt/archive.do?r=coi'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,False,False,SourceSystem.url,http://schema.org/,http://schema.org/url,schema:url,string ltc:,collectionManagementSystem,Collection Management System,"The collection management system that the source system is using, https://rs.tdwg.org/ltc/terms/collectionManagementSystem",,,['Specify 7'],http://www.w3.org/1999/02/22-rdf-syntax-ns#Property,SourceSystem,False,False,SourceSystem.collectionManagementSystem,http://rs.tdwg.org/ltc/terms/,http://rs.tdwg.org/ltc/terms/collectionManagementSystem,ltc:collectionManagementSystem,string diff --git a/app/md/annotation/termlist-header.md b/app/md/annotation/termlist-header.md index 32a887e..f652e4e 100644 --- a/app/md/annotation/termlist-header.md +++ b/app/md/annotation/termlist-header.md @@ -78,7 +78,6 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | | [Resource Description Framework](https://www.w3.org/RDF/) | RDF | `rdf: = http://www.w3.org/1999/02/22-rdf-syntax-ns#` | | [Web Annotation](https://www.w3.org/TR/annotation-vocab/) | OA | `oa: = http://www.w3.org/ns/oa#` | -| [Friend of a Friend](http://xmlns.com/foaf/spec/) | FOAF | `foaf: = http://xmlns.com/foaf/0.1/` | | [Activity Streams](https://www.w3.org/TR/activitystreams-vocabulary/) | AS | `as: = https://www.w3.org/ns/activitystreams#` | diff --git a/app/md/create-update-tombstone-event/termlist-header.md b/app/md/create-update-tombstone-event/termlist-header.md index f2bc589..616b74b 100644 --- a/app/md/create-update-tombstone-event/termlist-header.md +++ b/app/md/create-update-tombstone-event/termlist-header.md @@ -22,7 +22,7 @@ The model has been based on the W3C PROV model. It consists of three interlinked objects: - The Activity: This contains information about the action that was performed. It includes the time when the change was made (`prov:endedAtTime`) and in case of an Update it contains the full change (`ods:changeValue`) as a [JSON Patch object](https://jsonpatch.com/). - The Entity: The entity indicates the object that was changed. In case of an Create or Update it will hold the newly create object, in serialised as JSON in the field `prov:value`. -- The Agent: The agent is the person or system that made the change. It contains the identifier of the Agent en the agent name (`foaf:name`). +- The Agent: The agent is the person or system that made the change. It contains the identifier of the Agent en the agent name (`schema:name`). Each object refers to the other objects through a set of properties, following the PROV model. **Main contributors** @@ -68,8 +68,8 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | Vocabulary | Abbreviation | Namespaces and abbreviations | |--------------------------------------------------|--------------|----------------------------------------------------------------------------| | [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | -| [Friend of a Friend](http://xmlns.com/foaf/spec/) | FOAF | `foaf: = http://xmlns.com/foaf/0.1/` | | [PROV](https://www.w3.org/TR/prov-o/) | PROV | `prov: = http://www.w3.org/ns/prov#` | +| [Activity Streams](https://www.w3.org/TR/activitystreams-vocabulary/) | AS | `as: = https://www.w3.org/ns/activitystreams#` | ## 3 Namespaces, Prefixes and Term Names The namespace of terms borrowed from other vocabularies is that of the original. diff --git a/app/md/data-mapping/termlist-header.md b/app/md/data-mapping/termlist-header.md index e60af9a..2dc64ee 100644 --- a/app/md/data-mapping/termlist-header.md +++ b/app/md/data-mapping/termlist-header.md @@ -56,6 +56,7 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | Vocabulary | Abbreviation | Namespaces and abbreviations | |---------------------------------------------------------------------------|--------------|----------------------------------------------------------------------------| | [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | +| [Activity Streams](https://www.w3.org/TR/activitystreams-vocabulary/) | AS | `as: = https://www.w3.org/ns/activitystreams#` | ## 3 Namespaces, Prefixes and Term Names The namespace of terms borrowed from other vocabularies is that of the original. diff --git a/app/md/digital-media/termlist-header.md b/app/md/digital-media/termlist-header.md index 396b916..b791a7a 100644 --- a/app/md/digital-media/termlist-header.md +++ b/app/md/digital-media/termlist-header.md @@ -81,6 +81,7 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | [Darwin Core IRI Terms](https://dwc.tdwg.org/terms/) | DwC IRI | `dwciri: = http://rs.tdwg.org/dwc/terms/` | | [Dublin Core](http://dublincore.org/documents/dcmi-terms/) | DC | `dcterms: = http://purl.org/dc/terms/` | | [Audiovisual Core](https://ac.tdwg.org/termlist/) | AC | `ac: = http://rs.tdwg.org/ac/terms/` | +| [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | ## 3 Namespaces, Prefixes and Term Names diff --git a/app/md/digital-specimen/termlist-header.md b/app/md/digital-specimen/termlist-header.md index f57fdb1..e19bd3d 100644 --- a/app/md/digital-specimen/termlist-header.md +++ b/app/md/digital-specimen/termlist-header.md @@ -69,6 +69,8 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | [Darwin Core IRI Terms](https://dwc.tdwg.org/terms/) | DwC IRI | `dwciri: = http://rs.tdwg.org/dwc/terms/` | [Darwin Core Chronometric Age Vocabulary](https://tdwg.github.io/chrono/) | Chrono | `chrono: = http://rs.tdwg.org/chrono/terms/` | [Dublin Core](http://dublincore.org/documents/dcmi-terms/) | DC | `dcterms: = http://purl.org/dc/terms/` | +| [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | +| [Humboldt Extension for Ecological Inventories](https://eco.tdwg.org/) | ECO | `eco: = http://rs.tdwg.org/dwc/doc/eco/` | ## 3 Namespaces, Prefixes and Term Names The namespace of terms borrowed from other vocabularies is that of the original. diff --git a/app/md/machine-annotation-service/termlist-header.md b/app/md/machine-annotation-service/termlist-header.md index 524eb49..9e9dae8 100644 --- a/app/md/machine-annotation-service/termlist-header.md +++ b/app/md/machine-annotation-service/termlist-header.md @@ -51,6 +51,7 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) | Vocabulary | Abbreviation | Namespaces and abbreviations | |---------------------------------------------------------------------------|--------------|----------------------------------------------------------------------------| | [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | +| [Activity Streams](https://www.w3.org/TR/activitystreams-vocabulary/) | AS | `as: = https://www.w3.org/ns/activitystreams#` | ## 3 Namespaces, Prefixes and Term Names The namespace of terms borrowed from other vocabularies is that of the original. diff --git a/app/md/source-system/termlist-header.md b/app/md/source-system/termlist-header.md index 56b18b3..62bb43d 100644 --- a/app/md/source-system/termlist-header.md +++ b/app/md/source-system/termlist-header.md @@ -59,6 +59,7 @@ Table 1. Vocabularies from which terms have been borrowed (non-normative) |---------------------------------------------|--------------|----------------------------------------------------------------------------| | [Latimer Core](https://ltc.tdwg.org/terms/) | LtC | `lct: = http://rs.tdwg.org/ltc/terms/` | | [Schema.org](https://schema.org/) | Schema | `schema: = https://schema.org/version/latest/schemaorg-current-https.rdf` | +| [Activity Streams](https://www.w3.org/TR/activitystreams-vocabulary/) | AS | `as: = https://www.w3.org/ns/activitystreams#` | ## 3 Namespaces, Prefixes and Term Names diff --git a/app/templates/includes/resources/diagrams/class-diagrams/annotation-full.html b/app/templates/includes/resources/diagrams/class-diagrams/annotation-full.html index ecc9d4a..4431664 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/annotation-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/annotation-full.html @@ -9,6 +9,7 @@ motivatedBy : string creator : object created : string + modified : string issued : string generator : object batchID : string diff --git a/app/templates/includes/resources/diagrams/class-diagrams/data-mapping-full.html b/app/templates/includes/resources/diagrams/class-diagrams/data-mapping-full.html index c67da6f..14a9ea6 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/data-mapping-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/data-mapping-full.html @@ -7,6 +7,7 @@ name : string description : string dateCreated : string + dateModified : string creator : object DefaultMapping : array FieldMapping : array diff --git a/app/templates/includes/resources/diagrams/class-diagrams/digital-media-full.html b/app/templates/includes/resources/diagrams/class-diagrams/digital-media-full.html index 47602a5..76fd7ce 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/digital-media-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/digital-media-full.html @@ -3,6 +3,7 @@ ID : string version : integer status : None + modified : string created : string type : string type : None @@ -18,8 +19,6 @@ rightsHolder : string source : string creator : string - created : string - modified : string hasAssertion : array hasCitation : array hasIdentifier : array diff --git a/app/templates/includes/resources/diagrams/class-diagrams/digital-specimen-full.html b/app/templates/includes/resources/diagrams/class-diagrams/digital-specimen-full.html index f76aa69..8179ca4 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/digital-specimen-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/digital-specimen-full.html @@ -3,6 +3,7 @@ ID : string version : integer status : None + modified : string created : string type : string midsLevel : integer @@ -19,7 +20,6 @@ livingOrPreserved : None language : array license : string - modified : string basisOfRecord : string preparations : string disposition : string diff --git a/app/templates/includes/resources/diagrams/class-diagrams/machine-annotation-service-full.html b/app/templates/includes/resources/diagrams/class-diagrams/machine-annotation-service-full.html index ab94b58..9512e01 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/machine-annotation-service-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/machine-annotation-service-full.html @@ -7,6 +7,7 @@ name : string description : string dateCreated : string + dateModified : string creator : object containerImage : string containerTag : string diff --git a/app/templates/includes/resources/diagrams/class-diagrams/source-system-full.html b/app/templates/includes/resources/diagrams/class-diagrams/source-system-full.html index 9ab89f1..b5df605 100644 --- a/app/templates/includes/resources/diagrams/class-diagrams/source-system-full.html +++ b/app/templates/includes/resources/diagrams/class-diagrams/source-system-full.html @@ -7,6 +7,7 @@ name : string description : string dateCreated : string + dateModified : string creator : object url : string collectionManagementSystem : string