DESCRIPTION

Package: singscore
Type: Package
Title: Rank-based single-sample gene set scoring method
Version: 1.11.1
Authors@R: c(
            person("Ruqian","Lyu", email = "ruqianl@student.unimelb.edu.au", role = c("aut", "ctb")),
            person("Momeneh", "Foroutan", email = "foroutan.m@wehi.edu.au", role = c("aut", "ctb"), comment = c(ORCID = '0000-0002-1440-0457')),
            person("Dharmesh","Bhuva", "D.", email = "bhuva.d@wehi.edu.au", role = c("aut", "cre"), comment = c(ORCID = '0000-0002-6398-9157'))
            )
Description: A simple single-sample gene signature scoring method that uses rank-based 
  statistics to analyze the sample's gene expression profile. It scores the expression activities of 
  gene sets at a single-sample level.
biocViews: Software, GeneExpression, GeneSetEnrichment
Depends: R (>= 3.6)
Imports:
    methods,
    stats,
    graphics,
    ggplot2,
    grDevices,
    ggrepel,
    GSEABase,
    plotly,
    tidyr,
    plyr,
    magrittr,
    reshape,
    edgeR,
    RColorBrewer,
    Biobase,
    BiocParallel,
    SummarizedExperiment,
    matrixStats,
    reshape2,
    S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Roxygen: list(markdown = TRUE)
Collate: 
    'singscore.R'
    'rankAndScoring.R'
    'permuTest.R'
    'generatNullGeneric.R'
    'multiScoreGeneric.R'
    'plot.R'
    'plotRankDensityGeneric.R'
    'rankGenesGeneric.R'
    'simpleScoreGeneric.R'
    'stableGenes.R'
Suggests: knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr
URL: https://davislaboratory.github.io/singscore
BugReports: https://github.com/DavisLaboratory/singscore/issues