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Tophat forces bowtie -k and -m to be equal #39

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brianpenghe opened this issue Jun 4, 2016 · 0 comments
Open

Tophat forces bowtie -k and -m to be equal #39

brianpenghe opened this issue Jun 4, 2016 · 0 comments

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@brianpenghe
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By default tophat chooses 20 as -k and -m for bowtie. The -g option allows us to change the parameters but links -k and -m together. Can we unlink them? Say, -k 1 -m 20 ?

Thanks,
Brian

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