From a12c57e55d3b2af4d82e8ceafe5ff8b1ff52389a Mon Sep 17 00:00:00 2001
From: Alexander Kurz <alex.kurz95@gmail.com>
Date: Thu, 7 Dec 2023 12:22:43 +0100
Subject: [PATCH 1/4] Test conda environment on all operating systems

---
 .github/workflows/test-env.yaml | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)
 create mode 100644 .github/workflows/test-env.yaml

diff --git a/.github/workflows/test-env.yaml b/.github/workflows/test-env.yaml
new file mode 100644
index 0000000..150871d
--- /dev/null
+++ b/.github/workflows/test-env.yaml
@@ -0,0 +1,29 @@
+name: Test Env
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main, "release/*", "dev"]
+
+jobs:
+  run_env_tests:
+    name: Test Env (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
+    steps:
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          activate-environment: anaconda-client-env
+          environment-file: environment.yaml
+          auto-activate-base: false
+      - name: Conda info
+        shell: bash -el {0}
+        run: conda info
+      - name: Conda list
+        shell: pwsh
+        run: conda list

From 8bd46a2750e284c456ad349958e82417eb036c11 Mon Sep 17 00:00:00 2001
From: Alexander Kurz <alex.kurz95@gmail.com>
Date: Thu, 7 Dec 2023 12:25:40 +0100
Subject: [PATCH 2/4] First check out repo

---
 .github/workflows/test-env.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-env.yaml b/.github/workflows/test-env.yaml
index 150871d..a06005c 100644
--- a/.github/workflows/test-env.yaml
+++ b/.github/workflows/test-env.yaml
@@ -15,6 +15,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
     steps:
+      - uses: actions/checkout@v4
       - uses: conda-incubator/setup-miniconda@v3
         with:
           auto-update-conda: true

From 5a8ae51ebde4af9b9802c66ba3b413d3e890ac25 Mon Sep 17 00:00:00 2001
From: Alexander Kurz <alex.kurz95@gmail.com>
Date: Thu, 7 Dec 2023 12:36:14 +0100
Subject: [PATCH 3/4] Try to run conda commands on all platforms with bash

---
 .github/workflows/test-env.yaml | 13 +++++--------
 1 file changed, 5 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/test-env.yaml b/.github/workflows/test-env.yaml
index a06005c..8ed2c5b 100644
--- a/.github/workflows/test-env.yaml
+++ b/.github/workflows/test-env.yaml
@@ -18,13 +18,10 @@ jobs:
       - uses: actions/checkout@v4
       - uses: conda-incubator/setup-miniconda@v3
         with:
-          auto-update-conda: true
-          activate-environment: anaconda-client-env
+          activate-environment: test
           environment-file: environment.yaml
           auto-activate-base: false
-      - name: Conda info
-        shell: bash -el {0}
-        run: conda info
-      - name: Conda list
-        shell: pwsh
-        run: conda list
+      - shell: bash -l {0}
+        run: |
+          conda info
+          conda list

From 4fa4c78280aadc7599fb1a3ac5705c66bc989093 Mon Sep 17 00:00:00 2001
From: Alexander Kurz <alex.kurz95@gmail.com>
Date: Thu, 7 Dec 2023 12:42:07 +0100
Subject: [PATCH 4/4] Openslide not available via conda on Windows

---
 .github/workflows/test-env.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-env.yaml b/.github/workflows/test-env.yaml
index 8ed2c5b..f80dc60 100644
--- a/.github/workflows/test-env.yaml
+++ b/.github/workflows/test-env.yaml
@@ -13,7 +13,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
+        # os: ["ubuntu-latest", "macos-latest", "windows-latest"]  # Openslide not available via conda on Windows
+        os: ["ubuntu-latest", "macos-latest"]
     steps:
       - uses: actions/checkout@v4
       - uses: conda-incubator/setup-miniconda@v3