From 86aaee46c092e5aa4872765da44a9d479938533c Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Wed, 21 Apr 2021 13:34:15 -0700 Subject: [PATCH 1/7] Rewrote test_queries.py using NEID test userid instead of neidadmin userid --- tests/test_queries.py | 449 +++++++++++++++++++++--------------------- 1 file changed, 228 insertions(+), 221 deletions(-) diff --git a/tests/test_queries.py b/tests/test_queries.py index d7b5258..c2772f6 100644 --- a/tests/test_queries.py +++ b/tests/test_queries.py @@ -1,5 +1,10 @@ +import os import sys import io +import filecmp +import pytest +from pathlib import Path + from pyneid.neid import Neid from astropy.table import Table,Column @@ -7,253 +12,255 @@ # Docker container built with the Dockerfile # at the top level of the repo. -def test_login(): - # dummy user with limited access - Neid.login (userid='pyneidprop', \ - password='pielemonquietyellow', \ - cookiepath='./neidadmincookie.txt', - debugfile='./archive.debug') - -def test_l0_qeury(): - # by_adql: neidl0 returned 11071 records - # - query = "select * from neidl0" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ +# dummy user pyneidprop with limited access + +userdict = { + "pyneidprop_pielemonquietyellow":"Successfully login as pyneidprop", + "xxpyneidprop_pielemonquietyellow":"Failed to login: invalid userid = xxpyneidprop", + "pyneidprop_xxpielemonquietyellow":"Failed to login: invalid password" +} + +# +# test login method: correctly, wrong userid, and wrong password +# +@pytest.mark.parametrize ("user, expected", list(userdict.items()), \ + ids=list(userdict.keys())) + +def test_login (user, expected, capsys): + + ind = user.index('_') + userid = user[0:ind] + password = user[ind+1:] + + Neid.login (cookiepath='./neidtestcookie.txt', \ + userid=userid, \ + password=password) + + out, err = capsys.readouterr() + assert out.startswith (expected) + + +# +# test query_datetime method for all datalevel; +# but currently only l0 and l1 contains data for the test user. +# +# returned metadata files are compared with the truth data for validation. +# +datetimedict = { + "l0":"2021-01-16 06:10:55/2021-01-16 23:59:59", \ + "l1":"2021-01-16 06:10:55/2021-01-16 23:59:59" +} + +@pytest.mark.parametrize ("datalevel,datetime", list(datetimedict.items()), \ + ids=list(datetimedict.keys())) + +def test_query_datetime (datalevel, datetime, capsys): + + outpath = './datetime.' + datalevel + '.tbl' + datapath = './truth_data/datetime.' + datalevel + '.tbl' + + Neid.query_datetime (datalevel, \ + datetime, \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ - outpath='./adql.l0.tbl') - -def test_l1_query(): - # - # by_adql: neidl1 returned 10662 records - # - query = "select * from neidl1" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ + outpath=outpath) + + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) + + +# +# test query_position method for all datalevel; +# but currently only l0 and l1 contains data for the test user. +# +# returned metadata files are compared with the truth data for validation. +# +posdict = { + "l0": "circle 23.634 68.95 1.0", \ + "l1": "circle 23.634 68.95 1.0" +} + +@pytest.mark.parametrize ("datalevel,pos", list(posdict.items()), \ + ids=list(posdict.keys())) + +def test_query_position (datalevel, pos, capsys): + + outpath = './pos.' + datalevel + '.tbl' + datapath = './truth_data/pos.' + datalevel + '.tbl' + + Neid.query_position (datalevel, \ + pos, \ + cookiepath='./neidtestcookie.txt', \ + format='ipac', + outpath=outpath) + + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) + + +# +# test query_object method using l1 data +# +def test_query_object(): + + outpath = './object.l1.tbl' + datapath = './truth_data/object.l1.tbl' + + Neid.query_object ('l1', \ + 'HD 9407', \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ - outpath='./adql.l1.tbl') + outpath=outpath) -def test_l2_query(): - # - # by_adql: neidl2 returned 461 records - # - query = "select * from neidl2" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.l2.tbl') + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) -def test_query_eng(): - # - # by_adql: neideng returned 3321 records - # - query = "select * from neideng" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.eng.tbl') -def test_query_solar0(): - # - # by_adql: neidsolarl0 returned 8421 records - # - query = "select * from neidsolarl0" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.solarl0.tbl') +# +# test query_qobject method using l1 data +# +def test_query_qobject(): -def test_query_solar1(): - # - # by_adql: neidsolarl1 returned 4027 records - # - query = "select * from neidsolarl1" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.solarl1.tbl') - - -def test_query_solar2(): - # - # by_adql: neidsolarl2 returned 3759 records - # - query = "select * from neidsolarl2" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.solarl2.tbl') + outpath = './qobject.l1.tbl' + datapath = './truth_data/qobject.l1.tbl' -def test_query_solareng(): - # - # by_adql: neidsolareng returned 6 records - # - query = "select * from neidsolareng" - Neid.query_adql (query, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./adql.solareng.tbl') - -def test_query_datetime_l0(): - # - # search by datetime l0: returned 94 recs - # - Neid.query_datetime ('l0', \ - '2021-01-22 00:00:00/2021-01-22 23:59:59', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./datetime.ops.1.tbl') - -def test_query_datetime_l2(): - # - # search by datetime l2: returned 21 recs - # - Neid.query_datetime ('l2', \ - '2021-01-01 0:00:00/2021-01-31 23:59:59', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./datetime.l2.tbl') - -def test_query_datetime_solar0(): - # - # search by datetime solarl0: returned 19 recs - # - Neid.query_datetime ('solarl0', \ - '2021-01-01 00:00:00/2021-01-20 23:59:59', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./datetime.solarl0.tbl') - -def test_pos_cookie(): - # - # search by pos (with cookie): 56 records returned - # - Neid.query_position ('l0', \ - 'circle 26.0214 -15.9395 1.0', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./pos.l0.tbl') - - astropytbl = Table.read ('./pos.l0.tbl', format='ascii.ipac') - print ('pos.l0.tbl read successfully by astropy') - -def test_query_obj_cookie(): - # - # search by object (with cookie): 56 records returned - # - Neid.query_object ('l0', \ - 'HD 10700', \ - cookiepath='./neidadmincookie.txt', \ + Neid.query_qobject ('l1', \ + 'Gaia DR2', \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ - outpath='./object.l0.tbl') + outpath=outpath) - astropytbl = Table.read ('./object.l0.tbl', format='ascii.ipac') - print ('object.l0.tbl read successfully by astropy') + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) -def test_query_qobj_cookie(): - # - # search by qobject (with cookie): 56 records returned - # - Neid.query_qobject ('l0', \ - 'Gaia DR2', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./qobject.l0.tbl') +# +# test query_program method using l1 data +# +def test_query_program(): - astropytbl = Table.read ('./qobject.l0.tbl', format='ascii.ipac') - print ('qobject.l0.tbl read successfully by astropy') + outpath = './program.l1.tbl' + datapath = './truth_data/program.l1.tbl' -def test_query_piname_cookie(): - # - # search by piname (with cookie): 93 records returned - # - Neid.query_piname ('l0', \ - 'Mahadevan', \ + Neid.query_program ('l1', \ + '2021A-2014', \ cookiepath='./neidadmincookie.txt', \ format='ipac', \ - outpath='./piname.l0.tbl') + outpath=outpath) - astropytbl = Table.read ('./piname.l0.tbl', format='ascii.ipac') - print ('piname.l0.tbl read successfully by astropy') + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) -def test_query_program_cookie(): - # - # search by program (with cookie): 93 records returned - # - Neid.query_program ('l0', \ - '2021B-6666', \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./program.l0.tbl') - astropytbl = Table.read ('./program.l0.tbl', format='ascii.ipac') - print ('program.l0.tbl read successfully by astropy') +# +# test query_criteria method using l1 data +# +def test_query_criteria(): + + outpath = './criteria.l1.tbl' + datapath = './truth_data/criteria.l1.tbl' -def test_query_criteria_cookie(): - # - # following three examples search_criteria on the same location (with cookie) - # - # 1. input: object name, Sci data, datetime: 56 records returned - # param = dict() - param['datalevel'] = 'l0' - param['datetime'] = '2021-01-14 00:00:00/2021-01-14 23:59:59' - param['object'] = 'HD 95735' + param['datalevel'] = 'l1' + param['datetime'] = '2021-01-01 00:00:00/2021-04-19 23:59:59' + param['object'] = 'HD 9407' Neid.query_criteria (param, \ - cookiepath='./neidadmincookie.txt', \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ - outpath='./criteria.sci.tbl') + outpath=outpath) - astropytbl = Table.read ('./criteria.sci.tbl', format='ascii.ipac') - print ('criteria.sci.tbl read successfully by astropy') + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) - # - # 2. input: qobject name, Cal data, datetime: 6 records returned - # - param = dict() - param['datalevel'] = 'l0' - param['datetime'] = '2021-01-14 12:00:00/2021-01-14 23:59:59' - param['qobject'] = 'Gaia DR2' - param['obstype'] = 'sci' - Neid.query_criteria (param, \ - cookiepath='./neidadmincookie.txt', \ - format='ipac', \ - outpath='./criteria.sci.2.tbl') +# +# test query_adql method using l1 data +# +def test_qeury_adql(): - astropytbl = Table.read ('./criteria.sci.2.tbl', format='ascii.ipac') - print ('criteria.sci.2.tbl read successfully by astropy') + outpath = './adql.l1.tbl' + datapath = './truth_data/adql.l1.tbl' - # - # 3. input: qobject name, Eng data, datetime: 12 records returned - # - param = dict() - param['datalevel'] = 'l0' - param['datetime'] = '2021-01-14 12:00:00/2021-01-14 23:59:59' - param['qobject'] = 'Gaia DR2' - param['obstype'] = 'cal' + query = "select l1filename, l1filepath, l1propint, qobject, object, qra, qdec, to_char(obsdate,'YYYY-MM-DD HH24:MI:SS.FF3') as date_obs, exptime, obsmode, obstype, program, piname, datalvl, seeing, airmass, moonagl, qrad as ra, qdecd as dec from neidl1 where ((obsdate >= to_date('2020-01-01 06:10:55', 'yyyy-mm-dd HH24:MI:SS') and obsdate <= to_date('2021-04-19 23:59:59', 'yyyy-mm-dd HH24:MI:SS')) and (qdecd >= -90.)) order by obsdate" - Neid.query_criteria (param, \ - cookiepath='./neidadmincookie.txt', \ + Neid.query_adql (query, \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ - outpath='./criteria.eng.tbl') - - astropytbl = Table.read ('./criteria.eng.tbl', format='ascii.ipac') - print ('criteria.eng.tbl read successfully by astropy') - -# disabled for now since public users have no data to download yet - -# def test_downloafd(): -# # -# # download FITS: first time when dnload_dir is empty or created the -# # following script downloaded 3 FITS files, 3 calibration list, and -# # 30 more FITS files from the calibration list. -# # -# Neid.download('./criteria.sci.tbl', -# 'l0', \ -# 'ipac', \ -# '.', \ -# cookiepath='./neidadmincookie.txt', \ -# start_row=0, \ -# end_row=1) + outpath=outpath) + + assert os.path.exists(outpath), \ + f'Result not downloaded to file [{outpath:s}]' + assert (filecmp.cmp (outpath, datapath, shallow=False)) + +# +# test query_adql method: +# download the first two files from metadata file criteria.l1.tbl +# +dnloaddict = { + "l0":"./datetime.l0.tbl", \ + "l1":"./criteria.l1.tbl" +} + +@pytest.mark.parametrize ("datalevel,metatbl", list(dnloaddict.items()), \ + ids=list(dnloaddict.keys())) + +def test_download(datalevel, metatbl, capsys): +# +# Check if metadata file contains datalevel + 'filepath' column +# + astropytbl = Table.read (metatbl, format='ascii.ipac') + len_col = len(astropytbl.colnames) + + ind_filepathcol = -1 + for i in range (0, len_col): + + colname = datalevel + 'filepath' + if (astropytbl.colnames[i].lower() == colname): + ind_filepathcol = i + + assert (ind_filepathcol >= 0), \ + "filepath column doesn't exit in metadata table" + +# +# Make sure ./dnload_dir is empty +# + dnloaddir = './dnload_dir' + srow = 0 + erow = 1 + + if (os.path.exists (dnloaddir)): + + files = os.listdir(dnloaddir) + + for f in files: + os.remove(dnloaddir + '/'+f) + + Neid.download(metatbl, \ + datalevel, \ + 'ipac', \ + dnloaddir, \ + cookiepath='./neidtestcookie.txt', \ + start_row=srow, \ + end_row=erow) + + for i in range (srow, erow): + + filepath = astropytbl[i][ind_filepathcol] + ind = filepath.rindex ('/') + filename = filepath[ind+1:] + + print (f'filename= {filename:s}') + print (f'filepath= {filepath:s}') + + dnloaded = dnloaddir + '/' + filename + assert (os.path.exists (dnloaded)) + + filesize = Path (dnloaded).stat().st_size + assert (filesize > 100000) + From 718f76da438b9edd7baaa760e993c7826dc94198 Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Wed, 21 Apr 2021 13:46:03 -0700 Subject: [PATCH 2/7] Add truth_data sub-directory for metadata file validation --- truth_data/adql.l1.tbl | 51 +++++++++++ truth_data/criteria.l1.tbl | 8 ++ truth_data/datetime.l0.tbl | 179 +++++++++++++++++++++++++++++++++++++ truth_data/datetime.l1.tbl | 179 +++++++++++++++++++++++++++++++++++++ truth_data/object.l1.tbl | 8 ++ truth_data/pos.l0.tbl | 8 ++ truth_data/pos.l1.tbl | 8 ++ truth_data/program.l1.tbl | 56 ++++++++++++ truth_data/qobject.l1.tbl | 51 +++++++++++ 9 files changed, 548 insertions(+) create mode 100644 truth_data/adql.l1.tbl create mode 100644 truth_data/criteria.l1.tbl create mode 100644 truth_data/datetime.l0.tbl create mode 100644 truth_data/datetime.l1.tbl create mode 100644 truth_data/object.l1.tbl create mode 100644 truth_data/pos.l0.tbl create mode 100644 truth_data/pos.l1.tbl create mode 100644 truth_data/program.l1.tbl create mode 100644 truth_data/qobject.l1.tbl diff --git a/truth_data/adql.l1.tbl b/truth_data/adql.l1.tbl new file mode 100644 index 0000000..fc7fcb7 --- /dev/null +++ b/truth_data/adql.l1.tbl @@ -0,0 +1,51 @@ +|l1filename |l1filepath |l1propint |qobject |object |qra |qdec |date_obs |exptime |obsmode |obstype |program |piname |datalvl |seeing |airmass |moonagl |ra |dec | +|char |char |int |char |char |char |char |char |double |char |char |char |char |int |double |double |double |double |double | +| | |months | | |sexagesimal |sexagesimal | |s | | | | | |arcsec |secZ |deg |deg |deg | +|null |null |null |null |null |null |null |null |null |null |null |null |null |null |null |null |null |null |null | + neidL1_20210206T022718.fits sci/2021/02/06/l1/pv3/neidL1_20210206T022718.fits 0 Gaia DR2 532057254394731776 HD 9407 01:34:32.1762 +68:56:55.066 2021-02-06 02:27:18.000 1209.169001 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3605 84.3413 2.36340675000000e+01 6.89486294444444e+01 + neidL1_20210206T050053.fits sci/2021/02/06/l1/pv2/neidL1_20210206T050053.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-02-06 05:00:53.000 792.826459 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3892 31.0932 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210206T051443.fits sci/2021/02/06/l1/pv3/neidL1_20210206T051443.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-02-06 05:14:43.000 736.169860 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3344 31.0918 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210206T052738.fits sci/2021/02/06/l1/pv3/neidL1_20210206T052738.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-02-06 05:27:38.000 759.853856 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.2893 31.0902 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210211T020720.fits sci/2021/02/11/l1/pv3/neidL1_20210211T020720.fits 0 Gaia DR2 532057254394731776 HD 9407 01:34:32.1762 +68:56:55.066 2021-02-11 02:07:20.000 984.163919 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3600 87.2854 2.36340675000000e+01 6.89486294444444e+01 + neidL1_20210211T022422.fits sci/2021/02/11/l1/pv3/neidL1_20210211T022422.fits 0 Gaia DR2 532057254394731776 HD 9407 01:34:32.1762 +68:56:55.066 2021-02-11 02:24:22.000 1440.114052 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3872 87.2922 2.36340675000000e+01 6.89486294444444e+01 + neidL1_20210211T024900.fits sci/2021/02/11/l1/pv3/neidL1_20210211T024900.fits 0 Gaia DR2 532057254394731776 HD 9407 01:34:32.1762 +68:56:55.066 2021-02-11 02:49:00.000 1192.212869 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.4330 87.3025 2.36340675000000e+01 6.89486294444444e+01 + neidL1_20210221T102946.fits sci/2021/02/21/l1/pv2/neidL1_20210221T102946.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-02-21 10:29:46.000 348.281842 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.2210 33.4413 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210221T104142.fits sci/2021/02/21/l1/pv2/neidL1_20210221T104142.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-02-21 10:41:42.000 1500.015600 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.2548 33.4441 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02:59:26.000 310.179113 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.3406 43.3583 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210320T065925.fits sci/2021/03/20/l1/pv2/neidL1_20210320T065925.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-03-20 06:59:25.000 652.129483 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.2655 53.8505 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210320T071535.fits sci/2021/03/20/l1/pv2/neidL1_20210320T071535.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-03-20 07:15:35.000 1202.038428 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.2174 53.8460 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210320T073615.fits sci/2021/03/20/l1/pv2/neidL1_20210320T073615.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-03-20 07:36:15.000 819.962353 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.1656 53.8401 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210327T102535.fits 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1251.001018 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0821 52.7367 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210411T032205.fits sci/2021/04/11/l1/pv1/neidL1_20210411T032205.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-04-11 03:22:05.000 742.417928 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0492 65.8191 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210411T033506.fits sci/2021/04/11/l1/pv1/neidL1_20210411T033506.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-04-11 03:35:06.000 685.107058 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0395 65.8268 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210411T034710.fits sci/2021/04/11/l1/pv1/neidL1_20210411T034710.fits 0 Gaia DR2 806000816970521728 HD 89269 10:18:52.0366 +44:02:49.300 2021-04-11 03:47:10.000 673.043580 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0325 65.8337 1.54716819166667e+02 4.40470277777778e+01 + neidL1_20210415T054023.fits 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823.944055 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0150 53.0687 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210415T083148.fits sci/2021/04/15/l1/pv1/neidL1_20210415T083148.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-04-15 08:31:48.000 1119.996640 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0152 53.0661 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210415T085213.fits sci/2021/04/15/l1/pv1/neidL1_20210415T085213.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-04-15 08:52:13.000 718.700220 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0203 53.0655 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210418T062544.fits sci/2021/04/18/l1/pv1/neidL1_20210418T062544.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-04-18 06:25:44.000 854.952155 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0860 53.5031 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210418T064038.fits sci/2021/04/18/l1/pv1/neidL1_20210418T064038.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-04-18 06:40:38.000 915.933257 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0663 53.5047 2.17404301666667e+02 4.17949638888889e+01 + neidL1_20210418T065633.fits sci/2021/04/18/l1/pv1/neidL1_20210418T065633.fits 0 Gaia DR2 1491593733326694912 HD 127334 14:29:37.0324 +41:47:41.870 2021-04-18 06:56:33.000 940.036916 hr Sci 2021A-2014 Sarah Logsdon 1 0.0000 1.0491 53.5061 2.17404301666667e+02 4.17949638888889e+01 From 91c73ec0818185b72dca9f8e92bc126d70b9f04e Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Wed, 21 Apr 2021 13:52:55 -0700 Subject: [PATCH 3/7] Modified an typo in test_queries.py --- tests/test_queries.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/test_queries.py b/tests/test_queries.py index c2772f6..4343ebe 100644 --- a/tests/test_queries.py +++ b/tests/test_queries.py @@ -147,7 +147,7 @@ def test_query_program(): Neid.query_program ('l1', \ '2021A-2014', \ - cookiepath='./neidadmincookie.txt', \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ outpath=outpath) From 757d24bbe1f0cee29f8134177db8afd043755302 Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Wed, 21 Apr 2021 14:07:11 -0700 Subject: [PATCH 4/7] Switch download server program to be compatible with NEID web interface download logging. --- pyneid/neid/core.py | 25 +++++++++++++++++++++---- 1 file changed, 21 insertions(+), 4 deletions(-) diff --git a/pyneid/neid/core.py b/pyneid/neid/core.py index 2e5891c..25052e2 100644 --- a/pyneid/neid/core.py +++ b/pyneid/neid/core.py @@ -1750,7 +1750,12 @@ def download (self, metapath, datalevel, format, outdir, **kwargs): """urls for nph-neidDownload.py """ - self.getneid_url = self.baseurl + 'cgi-bin/NeidAPI/nph-neidDownload.py?' + #self.getneid_url = self.baseurl + 'cgi-bin/NeidAPI/nph-neidDownload.py?' + getfile_baseurl = 'https://neid.ipac.caltech.edu/' + + self.getneid_url = getfile_baseurl + 'get_file.php?' + #self.getneid_url = getfile_baseurl + 'get_file_pyNEID.php?' + if self.debug: logging.debug ('') @@ -1806,8 +1811,21 @@ def download (self, metapath, datalevel, format, outdir, **kwargs): """get data files """ - url = self.getneid_url + 'datalevel=' + datalevel + \ - '&filepath=' + '/' + filepath + '&debug=1' + #url = self.getneid_url + 'datalevel=' + datalevel + \ + # '&filepath=' + '/' + filepath + '&debug=1' + + url = self.getneid_url + 'filehand=' + filepath + + if ((datalevel == 'eng') or (datalevel == 'solareng')): + url = url + '&eng' + + if ((datalevel == 'solarl0') or \ + (datalevel == 'solarl1') or \ + (datalevel == 'solarl2') or \ + (datalevel == 'solareng')): + url = url + '&solar' + + url = url + '&json' filepath = self.outdir + '/' + filename @@ -3723,4 +3741,3 @@ def __get_statusjob (self): Neid = Archive() -print ('Neid instantiated') From 25b8282f1ef367ef2e3ecc85d376f9cecb5eea70 Mon Sep 17 00:00:00 2001 From: BJ Fulton Date: Tue, 27 Apr 2021 13:11:29 -0700 Subject: [PATCH 5/7] increment version --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index c894130..f557404 100644 --- a/setup.py +++ b/setup.py @@ -11,7 +11,7 @@ setup( name="pyneid", - version="1.0.1", + version="1.0.5", author="Mihseh Kong", description="NEID archive access client", long_description = long_description, From d301dc5f7a57b5f1967e8461a50e412d2d0b43e4 Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Mon, 3 May 2021 17:29:01 -0700 Subject: [PATCH 6/7] test_queries.py modified --- tests/test_queries.py | 94 +++++++++++++++++++++++++++++++++++++++---- 1 file changed, 87 insertions(+), 7 deletions(-) diff --git a/tests/test_queries.py b/tests/test_queries.py index 4343ebe..c6fa88d 100644 --- a/tests/test_queries.py +++ b/tests/test_queries.py @@ -67,8 +67,23 @@ def test_query_datetime (datalevel, datetime, capsys): assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + + if (datalevel == 'l0'): + assert (filecmp.cmp (outpath, datapath, shallow=False)) + + elif (datalevel == 'l1'): + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + assert (len(astropytbl) == len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # # test query_position method for all datalevel; @@ -97,7 +112,20 @@ def test_query_position (datalevel, pos, capsys): assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + #assert (filecmp.cmp (outpath, datapath, shallow=False)) + + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + + assert (len(astropytbl) >= len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # @@ -116,7 +144,20 @@ def test_query_object(): assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + #assert (filecmp.cmp (outpath, datapath, shallow=False)) + + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + + assert (len(astropytbl) >= len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # @@ -135,7 +176,20 @@ def test_query_qobject(): assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + #assert (filecmp.cmp (outpath, datapath, shallow=False)) + + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + + assert (len(astropytbl) >= len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # # test query_program method using l1 data @@ -147,13 +201,26 @@ def test_query_program(): Neid.query_program ('l1', \ '2021A-2014', \ - cookiepath='./neidtestcookie.txt', \ + cookiepath='./neidadmincookie.txt', \ format='ipac', \ outpath=outpath) assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + #assert (filecmp.cmp (outpath, datapath, shallow=False)) + + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + + assert (len(astropytbl) >= len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # @@ -196,7 +263,20 @@ def test_qeury_adql(): assert os.path.exists(outpath), \ f'Result not downloaded to file [{outpath:s}]' - assert (filecmp.cmp (outpath, datapath, shallow=False)) + #assert (filecmp.cmp (outpath, datapath, shallow=False)) + + astropytbl = None + astropytbl = Table.read (outpath, format='ascii.ipac') + assert (astropytbl is not None), \ + "f{outpath:s} cannot be read by astropy" + + astropytbl_truth = None + astropytbl_truth = Table.read (datapath, format='ascii.ipac') + assert (astropytbl_truth is not None), \ + "f{datapath:s} cannot be read by astropy" + + assert (len(astropytbl) >= len(astropytbl_truth)), \ + f"Number of records in {outpath:s} is incorrect" # # test query_adql method: From 9d305facf80280266a4ea687a25532a1684fdba7 Mon Sep 17 00:00:00 2001 From: MihsehKong Date: Mon, 3 May 2021 17:41:20 -0700 Subject: [PATCH 7/7] test_queries.py modified --- tests/test_queries.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/test_queries.py b/tests/test_queries.py index c6fa88d..58725e7 100644 --- a/tests/test_queries.py +++ b/tests/test_queries.py @@ -201,7 +201,7 @@ def test_query_program(): Neid.query_program ('l1', \ '2021A-2014', \ - cookiepath='./neidadmincookie.txt', \ + cookiepath='./neidtestcookie.txt', \ format='ipac', \ outpath=outpath)